Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 51 of 770
Found at i:14741250 original size:66 final size:70
Alignment explanation
Indices: 14741179--14741307 Score: 187
Period size: 71 Copynumber: 1.9 Consensus size: 70
14741169 ATTTAATATT
14741179 TAATTTAATTTAAT-ATTTATCTTAATAG-T-AT-TT-TATAAATTTAATATTAAAGTGATTATC
1 TAATTTAATTTAATGATTTATCTT-ATAGATAATATTCTATAAATTTAATATTAAAGTGATTATC
14741239 TTATCC
65 TTATCC
* *
14741245 TAATTTAATTTAATGTTTTATCTTATAGATAAATATTCTATTAATTTAATATTAAAGTGATTA
1 TAATTTAATTTAATGATTTATCTTATAGAT-AATATTCTATAAATTTAATATTAAAGTGATTA
14741308 AGTTTAATCA
Statistics
Matches: 55, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
66 18 0.33
67 9 0.16
69 2 0.04
70 2 0.04
71 24 0.44
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (70 bp):
TAATTTAATTTAATGATTTATCTTATAGATAATATTCTATAAATTTAATATTAAAGTGATTATCT
TATCC
Found at i:14742278 original size:18 final size:18
Alignment explanation
Indices: 14742255--14742289 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
14742245 GTTTTTTTTC
14742255 CTTTTTCTTTTTC-CTCTT
1 CTTTTT-TTTTTCTCTCTT
14742273 CTTTTTTTTTTCTCTCT
1 CTTTTTTTTTTCTCTCT
14742290 GTAAAATAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (18 bp):
CTTTTTTTTTTCTCTCTT
Found at i:14751944 original size:45 final size:45
Alignment explanation
Indices: 14751847--14752064 Score: 273
Period size: 45 Copynumber: 4.9 Consensus size: 45
14751837 TCGAATTCAT
* * * * *
14751847 TCACCGGCATT-TCGCCTACTAGGCTC-GAGGCCCG-ATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATC
* *
14751889 TCACCAGCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGCATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAACATC
* *
14751934 TCACCGGCATTGTAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATC
* * *
14751979 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATC
* *
14752024 TCACCAGCATTATAGTCTGCTAGGCTCAAAGGCCCGAATAA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAA
14752065 TCAAATCCAC
Statistics
Matches: 154, Mismatches: 17, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
42 10 0.06
43 13 0.08
44 8 0.05
45 123 0.80
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATC
Found at i:14760957 original size:3 final size:3
Alignment explanation
Indices: 14760949--14760977 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14760939 GGTGTTAAAT
14760949 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14760978 TCCTTCGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:14769883 original size:18 final size:18
Alignment explanation
Indices: 14769860--14769902 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
14769850 GGCAATGGAT
14769860 ACTTGTTCTTGATAGTTA
1 ACTTGTTCTTGATAGTTA
14769878 ACTTGTTCTTGATAGTTA
1 ACTTGTTCTTGATAGTTA
*
14769896 CCTTGTT
1 ACTTGTT
14769903 AAGTTGTCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.19, C:0.14, G:0.16, T:0.51
Consensus pattern (18 bp):
ACTTGTTCTTGATAGTTA
Found at i:14772930 original size:79 final size:82
Alignment explanation
Indices: 14772830--14773014 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
14772820 CTACTCGTTC
* * *
14772830 AAATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 AAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
14772893 GATTTAGTAAC-TCGCAC-
64 GATATAGTAACTTAGCACA
* **
14772910 CAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
14772974 TATAGTCACTTAGCACA
66 TATAGTAACTTAGCACA
14772991 AAAT-CCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGA
14773015 TATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 48 0.53
80 25 0.28
81 14 0.16
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (82 bp):
AAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCACA
Found at i:14772943 original size:39 final size:41
Alignment explanation
Indices: 14772829--14773014 Score: 215
Period size: 40 Copynumber: 4.6 Consensus size: 41
14772819 GCTACTCGTT
* * *
14772829 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
* *
14772869 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
*
14772909 CCAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
* * *
14772948 CAAATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAATATAGTAAC-TCGCA
14772989 CAAAAT-CCTTCGGGACTTAGCCCGGA
1 C-AAATGCCTTCGGGACTTAGCCCGGA
14773015 TATCATTCGA
Statistics
Matches: 126, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 65 0.52
41 19 0.15
42 7 0.06
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
Found at i:14781061 original size:68 final size:66
Alignment explanation
Indices: 14780989--14781160 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
14780979 CCTCATGTGT
* * * *
14780989 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
14781052 TGTAG
62 TGTAG
** * *
14781057 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
14781122 AG
65 AG
* * * *
14781124 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
14781161 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:14781094 original size:64 final size:64
Alignment explanation
Indices: 14781013--14781197 Score: 196
Period size: 67 Copynumber: 2.9 Consensus size: 64
14781003 AGACATTATG
* * *
14781013 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
14781077 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
14781142 AA
63 AA
* * * *
14781144 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTATAAGAGAGCT
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCT
14781198 GAACTATATG
Statistics
Matches: 99, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:14786231 original size:27 final size:26
Alignment explanation
Indices: 14786199--14786423 Score: 139
Period size: 27 Copynumber: 8.3 Consensus size: 26
14786189 TTAGTTTACC
* *
14786199 AAATTACCAAAGTACCCCCGATTTACA
1 AAATTACCAAA-TACCCTCGATTTATA
* ***
14786226 GAATTACCGTTCTACCCTCGATTTATA
1 AAATTACC-AAATACCCTCGATTTATA
**
14786253 AAATTACCATTTTACCCTCGATTTATA
1 AAATTACCA-AATACCCTCGATTTATA
* *** *
14786280 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTACC-AAATACCCTCGATTTATA
* * *
14786307 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTAC-CAAATACCCTC-GATTTATA
* * *
14786334 AAATTACTGAAATACCCCCTGATTTGTA
1 AAATTAC-CAAATACCCTC-GATTTATA
*
14786362 AAATTACTGAAATACCCTCGACTTGTA-A
1 AAATTAC-CAAATACCCTCGA-TT-TATA
14786390 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAA-TACCCTCGATTTATA
*
14786417 GAATTAC
1 AAATTAC
14786424 TGTTTTACCC
Statistics
Matches: 162, Mismatches: 26, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
26 3 0.02
27 112 0.69
28 46 0.28
29 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.32
Consensus pattern (26 bp):
AAATTACCAAATACCCTCGATTTATA
Found at i:14786323 original size:54 final size:54
Alignment explanation
Indices: 14786193--14786324 Score: 174
Period size: 54 Copynumber: 2.4 Consensus size: 54
14786183 AATATTTTAG
* *
14786193 TTTACCAAATTACCAAAGTACCCCCGATTTACAGAATTACCGTTCTACCCTCGA
1 TTTACAAAATTACCAAAATACCCCCGATTTACAGAATTACCGTTCTACCCTCGA
* *** * * *
14786247 TTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCCCGATTTACAGAATTACCGTTCTACCCTCGA
*
14786301 TTTACAAAATTACTAAAATACCCC
1 TTTACAAAATTACCAAAATACCCC
14786325 TGGTTTGTAA
Statistics
Matches: 64, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.33
Consensus pattern (54 bp):
TTTACAAAATTACCAAAATACCCCCGATTTACAGAATTACCGTTCTACCCTCGA
Found at i:14786339 original size:54 final size:54
Alignment explanation
Indices: 14786193--14786340 Score: 154
Period size: 54 Copynumber: 2.7 Consensus size: 54
14786183 AATATTTTAG
* * * * *
14786193 TTTACCAAATTACCAAAGTACCCCCGATTTACAGAATTACCGTTCTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCGTTCTACCCTCGA
* *** * *
14786247 TTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCGTTCTACCCTCGA
* * *
14786301 TTTACAAAATTACTAAAATACCC-CTGGTTTGTAAAATTAC
1 TTTACAAAATTACCAAAATACCCTC-GATTTATAAAATTAC
14786341 TGAAATACCC
Statistics
Matches: 77, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
53 1 0.01
54 76 0.99
ACGTcount: A:0.33, C:0.24, G:0.08, T:0.34
Consensus pattern (54 bp):
TTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCGTTCTACCCTCGA
Found at i:14786361 original size:28 final size:28
Alignment explanation
Indices: 14786306--14786396 Score: 123
Period size: 28 Copynumber: 3.3 Consensus size: 28
14786296 CTCGATTTAC
* *
14786306 AAAATTACTAAAATA-CCCCTGGTTTGT
1 AAAATTACTGAAATACCCCCTGATTTGT
14786333 AAAATTACTGAAATACCCCCTGATTTGT
1 AAAATTACTGAAATACCCCCTGATTTGT
* *
14786361 AAAATTACTGAAATACCCTC-GACTTGT
1 AAAATTACTGAAATACCCCCTGATTTGT
14786388 AAAAATTAC
1 -AAAATTAC
14786397 CAAAGTACCC
Statistics
Matches: 58, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
27 20 0.34
28 38 0.66
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (28 bp):
AAAATTACTGAAATACCCCCTGATTTGT
Found at i:14786405 original size:28 final size:27
Alignment explanation
Indices: 14786292--14786424 Score: 99
Period size: 28 Copynumber: 4.9 Consensus size: 27
14786282 ATTACCGTTT
* ** *
14786292 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGACTTGTAAAATTACTCAAA
** *
14786319 TACCC-CTGGTTTGTAAAATTACTGAAA
1 TACCCTC-GACTTGTAAAATTACTCAAA
* * *
14786346 TACCCCCTGATTTGTAAAATTACTGAAA
1 TACCCTC-GACTTGTAAAATTACTCAAA
14786374 TACCCTCGACTTGTAAAAATTAC-CAAA
1 TACCCTCGACTTGT-AAAATTACTCAAA
* * *
14786401 GTACCCTCGATTTATAGAATTACT
1 -TACCCTCGACTTGTAAAATTACT
14786425 GTTTTACCCT
Statistics
Matches: 90, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.01
27 42 0.47
28 47 0.52
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.32
Consensus pattern (27 bp):
TACCCTCGACTTGTAAAATTACTCAAA
Found at i:14786413 original size:55 final size:54
Alignment explanation
Indices: 14786292--14786425 Score: 146
Period size: 55 Copynumber: 2.4 Consensus size: 54
14786282 ATTACCGTTT
* * ** *
14786292 TACCCTCGATTTACAAAATTACTAAAATACCCCTGGTTTGTAAAATTACTGAAA
1 TACCCTCGATTTATAAAATTACTGAAATACCCCTGACTTGTAAAATTACTCAAA
* *
14786346 TACCCCCTGATTTGTAAAATTACTGAAATA-CCCTCGACTTGTAAAAATTAC-CAAA
1 TACCCTC-GATTTATAAAATTACTGAAATACCCCT-GACTTGT-AAAATTACTCAAA
*
14786401 GTACCCTCGATTTATAGAATTACTG
1 -TACCCTCGATTTATAAAATTACTG
14786426 TTTTACCCTC
Statistics
Matches: 66, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
54 10 0.15
55 42 0.64
56 14 0.21
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTGAAATACCCCTGACTTGTAAAATTACTCAAA
Found at i:14786432 original size:27 final size:27
Alignment explanation
Indices: 14786402--14786470 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
14786392 ATTACCAAAG
*
14786402 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTATTT
* *
14786429 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACTATTT
14786456 TACCC-CTGATTTATA
1 TACCCTC-GATTTATA
14786471 AAATAAAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
26 1 0.03
27 35 0.97
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTATTT
Found at i:14786502 original size:137 final size:134
Alignment explanation
Indices: 14786238--14786488 Score: 319
Period size: 137 Copynumber: 1.9 Consensus size: 134
14786228 ATTACCGTTC
*** *
14786238 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATT
* * * *
14786303 TACAAAATTACTAAAATACCCCTGGTTTGTAAAATTACTGAAATACCCCCTGATTTGTAAAATTA
66 TACAAAATTACTAAAATACCCCTGATTTATAAAATTAC--AAATAACCCCAGATTTGTAAAATTA
14786368 CTGAAA
129 CTGAAA
*
14786374 TACCCTCGACTTGTA-AAAATTACCAAAGTACCCTCGATTTATAGAATTACTGTTTTACCCTCAA
1 TACCCTCGA-TT-TATAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCAA
* *** *
14786438 TTTACAGAATTACTATTTTACCCCTGATTTATAAAA-TA-AAATAATCCCAGA
64 TTTACAAAATTACTAAAATACCCCTGATTTATAAAATTACAAATAACCCCAGA
14786489 AAAATATTTA
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
133 10 0.10
136 11 0.11
137 76 0.77
138 2 0.02
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (134 bp):
TACCCTCGATTTATAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATT
TACAAAATTACTAAAATACCCCTGATTTATAAAATTACAAATAACCCCAGATTTGTAAAATTACT
GAAA
Found at i:14786815 original size:31 final size:31
Alignment explanation
Indices: 14786777--14786882 Score: 185
Period size: 31 Copynumber: 3.4 Consensus size: 31
14786767 ACGGTTACTA
14786777 GGCCGAAGCCTTTTCATAAATCATATCACTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
* *
14786808 GGCCGAAGCCTTTTAATAAATCATATCACTA
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
*
14786839 GGCCGAAGCCTTTTCATAAATCATTTCACTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
14786870 GGCCGAAGCCTTT
1 GGCCGAAGCCTTT
14786883 ACTGTAAATG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 70 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTG
Found at i:14786957 original size:42 final size:42
Alignment explanation
Indices: 14786910--14786997 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 42
14786900 CCATAGGCCT
* ** *
14786910 ATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
*
14786952 ATTTCAATATCATATGAAATACCAATGAATGTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
14786994 ATTT
1 ATTT
14786998 GGGGAGACTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (42 bp):
ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
Found at i:14787172 original size:25 final size:26
Alignment explanation
Indices: 14787143--14787239 Score: 144
Period size: 26 Copynumber: 3.8 Consensus size: 26
14787133 CTCTTTTAAT
*
14787143 AACTGGGGCA-AAACCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
14787168 AACTGGGGCA-AAGCCTTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
14787193 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
14787219 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
14787240 GCACTTCCTC
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 31 0.48
26 33 0.52
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:14787214 original size:26 final size:25
Alignment explanation
Indices: 14787130--14787239 Score: 125
Period size: 26 Copynumber: 4.4 Consensus size: 25
14787120 TTGGAGGCCT
14787130 AGCCTCTTTT-AAT-AACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAA
* **
14787154 AACCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
*
14787179 AGCCTTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCA-A
**
14787205 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCA-A
14787231 AGCCCTTTT
1 AGCCCTTTT
14787240 GCACTTCCTC
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
23 5 0.07
24 4 0.05
25 31 0.42
26 33 0.45
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGGGGCAA
Found at i:14787216 original size:51 final size:49
Alignment explanation
Indices: 14787130--14787239 Score: 159
Period size: 51 Copynumber: 2.2 Consensus size: 49
14787120 TTGGAGGCCT
14787130 AGCCTCTTTTAATAACTGGGGCAAAACCCTTTTCGGTAAACTGGGGCA-A
1 AGCCT-TTTTAATAACTGGGGCAAAACCCTTTTCGGTAAACTGGGGCATA
*
14787179 AGCCTTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCTTTTT-AAT-AACTGGGGCA-AAACCCTTTTCGGTAAACTGGGGCATA
*
14787231 AGCCCTTTT
1 AGCCTTTTT
14787240 GCACTTCCTC
Statistics
Matches: 55, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
48 4 0.07
49 8 0.15
50 10 0.18
51 24 0.44
52 9 0.16
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (49 bp):
AGCCTTTTTAATAACTGGGGCAAAACCCTTTTCGGTAAACTGGGGCATA
Found at i:14787314 original size:20 final size:20
Alignment explanation
Indices: 14787289--14787375 Score: 140
Period size: 20 Copynumber: 4.3 Consensus size: 20
14787279 TTATGAATAC
14787289 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
14787309 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
14787329 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
14787349 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
14787369 ATCATGT
1 ATCATGT
14787376 ATATCATATC
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 61 0.97
21 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:14788311 original size:27 final size:27
Alignment explanation
Indices: 14788178--14788330 Score: 123
Period size: 27 Copynumber: 5.7 Consensus size: 27
14788168 TTCATCCTAC
* * *
14788178 AAGGGTGTTTTGGTAAATCTACAAA-T
1 AAGGGTATTTTGGTAATTTTACAAACT
**
14788204 CAAGGGTATTTCT-GTAATTTTGTAAA-T
1 -AAGGGTATTT-TGGTAATTTTACAAACT
* *
14788231 TAGAGGTATTTTGGTAATTTTACAAATT
1 AAG-GGTATTTTGGTAATTTTACAAACT
* * * * *
14788259 GAGGGTATTTCGATAATTTCACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
*
14788286 AATGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
* *
14788313 AGGGGTGTTTTGGTAATT
1 AAGGGTATTTTGGTAATT
14788331 CTACCCTATA
Statistics
Matches: 99, Mismatches: 23, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
26 3 0.03
27 92 0.93
28 4 0.04
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:14788370 original size:27 final size:27
Alignment explanation
Indices: 14788235--14788370 Score: 89
Period size: 27 Copynumber: 5.0 Consensus size: 27
14788225 GTAAATTAGA
* *
14788235 GGTATTTTGGTAATTTTACAAATTGA-G
1 GGTATTTTGGTAATTTCAC-AATCGAGG
* * * * **
14788262 GGTATTTCGATAATTTCACAAACCAAT
1 GGTATTTTGGTAATTTCACAATCGAGG
* * *
14788289 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTCACAATCGAGG
* * *
14788316 GGTGTTTTGGTAATTCTACCCTAT--AGG
1 GGTATTTTGGTAATT-T-CACAATCGAGG
*
14788343 GGTATTTTAGTAATTTCACAATCGAGG
1 GGTATTTTGGTAATTTCACAATCGAGG
14788370 G
1 G
14788371 TAAAATGGTA
Statistics
Matches: 82, Mismatches: 22, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
25 4 0.05
26 4 0.05
27 71 0.87
28 1 0.01
29 2 0.02
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTATTTTGGTAATTTCACAATCGAGG
Found at i:14788462 original size:27 final size:27
Alignment explanation
Indices: 14788342--14788590 Score: 137
Period size: 27 Copynumber: 9.2 Consensus size: 27
14788332 TACCCTATAG
* * *
14788342 GGGTATTTTAGTAATTTCA-CAATCGA
1 GGGTAATTTAGTAATTTTATAAATCGA
** * * *
14788368 GGGTAAAATGGTAATTTTGTAAAT-TA
1 GGGTAATTTAGTAATTTTATAAATCGA
*** *
14788394 GGGGTAAAACAGTAATTTTGTAAATCGA
1 -GGGTAATTTAGTAATTTTATAAATCGA
** *
14788422 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAATTTAGTAATTTTATAAATCGA
* * * **
14788449 GGGTACTTTGGTAATTTGTACAGGTCGA
1 GGGTAATTTAGTAATTT-TATAAATCGA
* *
14788477 GGGT-ATTTCAGTAATTTTACAAATCAGG
1 GGGTAATTT-AGTAATTTTATAAATC-GA
* * *
14788505 GGGTATTTTAGTAATTTTACAAA-CTA
1 GGGTAATTTAGTAATTTTATAAATCGA
* *
14788531 GGGGTATTTTAGTAATTTTGTAAATCGA
1 -GGGTAATTTAGTAATTTTATAAATCGA
**** *
14788559 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAATTTAGTAATTTTATAAATCGA
14788586 GGGTA
1 GGGTA
14788591 GAACGGTAAT
Statistics
Matches: 174, Mismatches: 40, Indels: 17
0.75 0.17 0.07
Matches are distributed among these distances:
26 14 0.08
27 117 0.67
28 40 0.23
29 3 0.02
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.35
Consensus pattern (27 bp):
GGGTAATTTAGTAATTTTATAAATCGA
Found at i:14788463 original size:54 final size:54
Alignment explanation
Indices: 14788404--14788635 Score: 137
Period size: 54 Copynumber: 4.3 Consensus size: 54
14788394 GGGGTAAAAC
14788404 AGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTACTTT
1 AGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTACTTT
* * ** * * * *
14788458 GGTAA-TTTGTACAGGTCGAGGGT-ATTTCAGTAATTTTACAAATCAGGGGGTATTTT
1 AGTAATTTTGTA-A-ATCGAGGGTAAAAT-AGTAATTCTATAAATC-GAGGGTACTTT
** * *** * * ****
14788514 AGTAATTTTACAAA-CTAGGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGA-GGGTAAAATAGTAATTCTATAAATCGAGGGTACTTT
* * * * ** * *
14788568 GGTAATTCTATAAATCGAGGGTAGAACGGTAATTCTGTAAATCGGGGGTACTTT
1 AGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTACTTT
*
14788622 AGTAATTTGGTAAA
1 AGTAATTTTGTAAA
14788636 CTAAAGTATT
Statistics
Matches: 130, Mismatches: 40, Indels: 16
0.70 0.22 0.09
Matches are distributed among these distances:
53 6 0.05
54 61 0.47
55 42 0.32
56 17 0.13
57 4 0.03
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (54 bp):
AGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTACTTT
Found at i:14788480 original size:28 final size:27
Alignment explanation
Indices: 14788445--14788525 Score: 83
Period size: 28 Copynumber: 2.9 Consensus size: 27
14788435 ATTCTATAAA
*
14788445 TCGAGGGTACTTT-GGTAATTTGTACAGG
1 TCGAGGGTA-TTTCAGTAATTT-TACAGG
**
14788473 TCGAGGGTATTTCAGTAATTTTACAAA
1 TCGAGGGTATTTCAGTAATTTTACAGG
* *
14788500 TCAGGGGGTATTTTAGTAATTTTACA
1 TC-GAGGGTATTTCAGTAATTTTACA
14788526 AACTAGGGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
27 9 0.20
28 37 0.80
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.38
Consensus pattern (27 bp):
TCGAGGGTATTTCAGTAATTTTACAGG
Found at i:14788501 original size:55 final size:54
Alignment explanation
Indices: 14788431--14788563 Score: 142
Period size: 55 Copynumber: 2.4 Consensus size: 54
14788421 AGGGTAAAAT
* * **
14788431 AGTAATTCTATAAATCGAGGGTACTTTGGTAATTTGTACAGGTCGA-GGGTATTTC
1 AGTAATTTTATAAATCGAGGGTACTTTAGTAATTT-TACA-AACGAGGGGTATTTC
* * * * *
14788486 AGTAATTTTACAAATCAGGGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTT
1 AGTAATTTTATAAATC-GAGGGTACTTTAGTAATTTTACAAACGAGGGGTATTTC
*
14788541 AGTAATTTTGTAAATCGAGGGTA
1 AGTAATTTTATAAATCGAGGGTA
14788564 AAACGGTAAT
Statistics
Matches: 64, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
54 8 0.12
55 40 0.62
56 16 0.25
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (54 bp):
AGTAATTTTATAAATCGAGGGTACTTTAGTAATTTTACAAACGAGGGGTATTTC
Found at i:14788526 original size:28 final size:27
Alignment explanation
Indices: 14788477--14788549 Score: 112
Period size: 28 Copynumber: 2.7 Consensus size: 27
14788467 TACAGGTCGA
*
14788477 GGGTATTTCAGTAATTTTACAAA-TCAGG
1 GGGTATTTTAGTAATTTTACAAACT-A-G
14788505 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTAGTAATTTTACAAACTAG
14788532 GGGTATTTTAGTAATTTT
1 GGGTATTTTAGTAATTTT
14788550 GTAAATCGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
27 19 0.44
28 23 0.53
29 1 0.02
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAACTAG
Found at i:14788626 original size:27 final size:27
Alignment explanation
Indices: 14788404--14788628 Score: 118
Period size: 27 Copynumber: 8.3 Consensus size: 27
14788394 GGGGTAAAAC
* **
14788404 AGTAATTTTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAATTT
* *
14788431 AGTAATTCTATAAATCGAGGGTACTTT
1 AGTAATTCTGTAAATCGAGGGTAATTT
* *
14788458 GGTAATT-TGTACAGGTCGAGGGT-ATTT
1 AGTAATTCTGTA-A-ATCGAGGGTAATTT
* ** * *
14788485 CAGTAATTTTACAAATCAGGGGGTATTTT
1 -AGTAATTCTGTAAATC-GAGGGTAATTT
* * *
14788514 AGTAATT-T-TACAAACTAGGGGTATTTT
1 AGTAATTCTGTA-AATCGA-GGGTAATTT
* ***
14788541 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAATTT
* * **
14788568 GGTAATTCTATAAATCGAGGGTAGA-AC
1 AGTAATTCTGTAAATCGAGGGTA-ATTT
* * *
14788595 GGTAATTCTGTAAATCGGGGGTACTTT
1 AGTAATTCTGTAAATCGAGGGTAATTT
14788622 AGTAATT
1 AGTAATT
14788629 TGGTAAACTA
Statistics
Matches: 152, Mismatches: 34, Indels: 24
0.72 0.16 0.11
Matches are distributed among these distances:
26 4 0.03
27 108 0.71
28 33 0.22
29 7 0.05
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAATTT
Found at i:14790618 original size:25 final size:25
Alignment explanation
Indices: 14790571--14790656 Score: 104
Period size: 25 Copynumber: 3.4 Consensus size: 25
14790561 GCCTTATTAC
* *
14790571 TGAAAAGGGATTATGCCCCAGTTTAT
1 TGAAAAGGGCTT-TGCCCTAGTTTAT
*
14790597 TGAAAAGGGCTTTGCCCTAGTTTAC
1 TGAAAAGGGCTTTGCCCTAGTTTAT
*
14790622 CGAAAAGGGCTTTGCCCTAG-TTAT
1 TGAAAAGGGCTTTGCCCTAGTTTAT
14790646 T-AAAAGAGGCT
1 TGAAAAG-GGCT
14790657 AAGCCTCTAG
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
23 5 0.09
24 7 0.13
25 30 0.57
26 11 0.21
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (25 bp):
TGAAAAGGGCTTTGCCCTAGTTTAT
Found at i:14790847 original size:41 final size:41
Alignment explanation
Indices: 14790789--14790877 Score: 124
Period size: 41 Copynumber: 2.1 Consensus size: 41
14790779 TAGTCTCCCC
* ** *
14790789 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAAT-GGCTTGCATACATCCATTGACATTACATATGATATTG
*
14790831 AAATGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGCTTGCATACATCCATTGACATTACATATGATATTG
14790872 AAATGG
1 AAATGG
14790878 GCCTCTGGGC
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
41 38 0.90
42 4 0.10
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.36
Consensus pattern (41 bp):
AAATGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:14792901 original size:71 final size:71
Alignment explanation
Indices: 14792817--14792980 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
14792807 CGATTTGTCT
14792817 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
14792882 CTTTCA
66 CTTTCA
* *
14792888 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
14792953 CTTTCA
66 CTTTCA
14792959 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
14792981 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:14793018 original size:71 final size:70
Alignment explanation
Indices: 14792817--14793014 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
14792807 CGATTTGTCT
* * * * *
14792817 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
14792882 CTTTCA
65 CTTTCA
* * * *
14792888 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
14792953 CTTTCA
65 CTTTCA
* *
14792959 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
14793015 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:14800566 original size:17 final size:18
Alignment explanation
Indices: 14800539--14800572 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
14800529 GTGCAAAAGT
14800539 GGTGTTCTAATAGCTAAA
1 GGTGTTCTAATAGCTAAA
14800557 GGTG-TCTAATAGCTAA
1 GGTGTTCTAATAGCTAA
14800573 GAAACTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (18 bp):
GGTGTTCTAATAGCTAAA
Found at i:14803130 original size:20 final size:20
Alignment explanation
Indices: 14803090--14803130 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14803080 TGTCCCTGTA
* *
14803090 TTTTGAAAAATTTTCTAAGT
1 TTTTCAAAAATTTCCTAAGT
*
14803110 TTTTCAAAAATTTCCTGAGT
1 TTTTCAAAAATTTCCTAAGT
14803130 T
1 T
14803131 ATCGATTTAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.10, G:0.10, T:0.49
Consensus pattern (20 bp):
TTTTCAAAAATTTCCTAAGT
Found at i:14809597 original size:6 final size:6
Alignment explanation
Indices: 14809586--14809617 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
14809576 AATTAGATTA
*
14809586 TTATTT TTATTT TTATTT TTATTT CTATTT TT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TT
14809618 GTTATTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (6 bp):
TTATTT
Found at i:14813587 original size:14 final size:15
Alignment explanation
Indices: 14813568--14813624 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
14813558 AATCTTTAAG
14813568 GATATG-CAATCTTA
1 GATATGACAATCTTA
14813582 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
14813599 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
14813618 GATATGA
1 GATATGA
14813625 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:14813609 original size:36 final size:38
Alignment explanation
Indices: 14813568--14813646 Score: 126
Period size: 36 Copynumber: 2.1 Consensus size: 38
14813558 AATCTTTAAG
14813568 GATATGCAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
14813604 GATATGCAATCTTAGATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATA-GCAATCTT-AAGATAT
14813644 GAT
1 GAT
14813647 CTTGTAATCT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
40 9 0.23
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:14813615 original size:19 final size:19
Alignment explanation
Indices: 14813568--14813646 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
14813558 AATCTTTAAG
14813568 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14813587 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14813604 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14813623 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
14813644 GAT
1 GAT
14813647 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14816900 original size:19 final size:18
Alignment explanation
Indices: 14816860--14816899 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
14816850 GAAATATTTA
*
14816860 TTTTGATGTTTTTAGTAT
1 TTTTGATGTTTATAGTAT
14816878 TTTTGATGGTTTATA-TAT
1 TTTTGAT-GTTTATAGTAT
14816896 TTTT
1 TTTT
14816900 TAAAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.17, C:0.00, G:0.15, T:0.68
Consensus pattern (18 bp):
TTTTGATGTTTATAGTAT
Found at i:14816931 original size:12 final size:12
Alignment explanation
Indices: 14816901--14816933 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
14816891 TATATTTTTT
14816901 AAAATT-ATATA
1 AAAATTAATATA
14816912 AAAA-TAATATA
1 AAAATTAATATA
14816923 AAAATTAATAT
1 AAAATTAATAT
14816934 GGGCAAGACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:14818922 original size:79 final size:81
Alignment explanation
Indices: 14818789--14818966 Score: 297
Period size: 79 Copynumber: 2.2 Consensus size: 81
14818779 GATCCAAAGT
14818789 TTTATGTAAGTTATGATATAATATATATATTTTTTATATTCACTAAATGTTAGAAATTACATTTT
1 TTTATGTAAGTTATGATATAATATATATATTTTTTATATTCACTAAATGTTAGAAATTACATTTT
*
14818854 TTATATTCTTTAAATG
66 TTATACTCTTTAAATG
* **
14818870 TTTATGTAAGTTATGATAT-A-ATATATATTTTTTATATTCTCTAAATGTTAGAAATTGTATTTT
1 TTTATGTAAGTTATGATATAATATATATATTTTTTATATTCACTAAATGTTAGAAATTACATTTT
14818933 TTATACTCTTTAAATG
66 TTATACTCTTTAAATG
*
14818949 TTTATGTAACTTATGATA
1 TTTATGTAAGTTATGATA
14818967 ATCATTAACT
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
79 72 0.78
80 1 0.01
81 19 0.21
ACGTcount: A:0.34, C:0.05, G:0.08, T:0.52
Consensus pattern (81 bp):
TTTATGTAAGTTATGATATAATATATATATTTTTTATATTCACTAAATGTTAGAAATTACATTTT
TTATACTCTTTAAATG
Found at i:14819665 original size:24 final size:23
Alignment explanation
Indices: 14819636--14819706 Score: 81
Period size: 24 Copynumber: 3.0 Consensus size: 23
14819626 TTTAATAAAT
14819636 TTAAATATCAAATTAGAAAAAAAA
1 TTAAATATCAAATTA-AAAAAAAA
* *
14819660 TTAAATACCAAATTAAAAAAATA
1 TTAAATATCAAATTAAAAAAAAA
*
14819683 TAAAAT-TCAATTATTAAAAAAAAA
1 TTAAATATCAA--ATTAAAAAAAAA
14819707 AAGAGTATAG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
22 3 0.08
23 12 0.30
24 25 0.62
ACGTcount: A:0.66, C:0.06, G:0.01, T:0.27
Consensus pattern (23 bp):
TTAAATATCAAATTAAAAAAAAA
Found at i:14821590 original size:77 final size:77
Alignment explanation
Indices: 14821393--14821658 Score: 353
Period size: 77 Copynumber: 3.5 Consensus size: 77
14821383 CGCATATATC
* *
14821393 GGGA-AGGGGGAACTGATTTGGGGAAAAGAAATTGGGGAAAAATGAAAGGGATTTGGGAAAAAAC
1 GGGAGAGGGGGAACTGATTTGGGGAAAAGAAATTGGGGAAAAAAGAAAGGGATCTGGGAAAAAAC
*
14821457 TTTGGGATTTC-
66 TTAGGGATTTCG
* * * *
14821468 GGG-GAGGGGGAATTGATTTAGGGAAAAGGAATTGGGGAAAAAAGAAAGGGGTCTGGGAAAGAAA
1 GGGAGAGGGGGAACTGATTTGGGGAAAAGAAATTGGGGAAAAAAGAAAGGGATCTGGGAAA-AAA
14821532 CTTAGGGATTTCG
65 CTTAGGGATTTCG
* * *
14821545 GGGAGAGGGGGAACTGGTTT-GGGAAAAGAAATTGGGGAAAAAAGAAATGAATCTGGGAAAAACA
1 GGGAGAGGGGGAACTGATTTGGGGAAAAGAAATTGGGGAAAAAAGAAAGGGATCTGGGAAAAA-A
*
14821609 TTTAGGGATTTCG
65 CTTAGGGATTTCG
* * *
14821622 AGGAG-GAGGGAACTAATTTGGGGAAAAGAAATTGGGG
1 GGGAGAGGGGGAACTGATTTGGGGAAAAGAAATTGGGG
14821659 TTTTGGGGCT
Statistics
Matches: 167, Mismatches: 18, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
75 53 0.32
76 27 0.16
77 73 0.44
78 14 0.08
ACGTcount: A:0.38, C:0.04, G:0.39, T:0.19
Consensus pattern (77 bp):
GGGAGAGGGGGAACTGATTTGGGGAAAAGAAATTGGGGAAAAAAGAAAGGGATCTGGGAAAAAAC
TTAGGGATTTCG
Found at i:14828064 original size:41 final size:41
Alignment explanation
Indices: 14828000--14828187 Score: 218
Period size: 41 Copynumber: 4.5 Consensus size: 41
14827990 TGTATCAGTG
14828000 ATATTCGGGCTTTATTGCCTAGCAGGCTTTGTGCCGGTGTATA
1 ATATT-GGGCTTTA-TGCCTAGCAGGCTTTGTGCCGGTGTATA
*
14828043 ATATTGGGCTTTATGCCTAGCAGGCTTTGTGCCAGTGTATA
1 ATATTGGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGTATA
* **
14828084 ATATCGGGCTTTATGCCTAATAGGCTTTGTGCCGGTGTA-A
1 ATATTGGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGTATA
*** * * *
14828124 TATATCAAGC-TTATTGCCTAGCAGGCTCTGTGCTGGTGTATT
1 -ATATTGGGCTTTA-TGCCTAGCAGGCTTTGTGCCGGTGTATA
* *
14828166 ATACTAGGCTTTATGCCTAGCA
1 ATATTGGGCTTTATGCCTAGCA
14828188 AATTTTATGT
Statistics
Matches: 126, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
40 4 0.03
41 106 0.84
42 11 0.09
43 5 0.04
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.36
Consensus pattern (41 bp):
ATATTGGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGTATA
Found at i:14829199 original size:18 final size:18
Alignment explanation
Indices: 14829178--14829212 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
14829168 AGGTCTCCAG
14829178 CAAAATCAGCATCAACAA
1 CAAAATCAGCATCAACAA
14829196 CAAAATCAGCATCAACA
1 CAAAATCAGCATCAACA
14829213 TACCCTATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.29, G:0.06, T:0.11
Consensus pattern (18 bp):
CAAAATCAGCATCAACAA
Found at i:14838768 original size:20 final size:21
Alignment explanation
Indices: 14838743--14838782 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
14838733 AACCACTTAT
14838743 CACACA-AGCAATCACAAATG
1 CACACATAGCAATCACAAATG
* *
14838763 CACACATATCAATCCCAAAT
1 CACACATAGCAATCACAAAT
14838783 CAAAGTCATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.47, C:0.33, G:0.05, T:0.15
Consensus pattern (21 bp):
CACACATAGCAATCACAAATG
Found at i:14842947 original size:121 final size:121
Alignment explanation
Indices: 14842733--14842969 Score: 422
Period size: 121 Copynumber: 2.0 Consensus size: 121
14842723 TCTATCCTAC
14842733 TGTGCAATAGTCCAAATGAAAGGAACTCCCTTACGCAGAAGCTTAGTGAACGGAGCTGCGATCAA
1 TGTGCAATAGTCCAAATGAAAGGAACTCCCTTACGCAGAAGCTTAGTGAACGGAGCTGCGATCAA
* *
14842798 GGAGAACCATTCAACGAAATGTCGATAATATCCTGCAGCCTTAGAAAACTACGGAT
66 GGAGAACCATTCAACAAAATGTCGATAATATCCTGCAGCCCTAGAAAACTACGGAT
14842854 TGTGCAATAGTCCAAATGAAAGGAACTCCCTTACGCAGAAGCTTAGTCG-ACGGAGCTGCGATCA
1 TGTGCAATAGTCCAAATGAAAGGAACTCCCTTACGCAGAAGCTTAGT-GAACGGAGCTGCGATCA
* *
14842918 AGGAGAACCCTTCTACAAAATGTCGATAATATCCTGCAGCCCTAGAAAACTA
65 AGGAGAACCATTCAACAAAATGTCGATAATATCCTGCAGCCCTAGAAAACTA
14842970 ATGATTTCAG
Statistics
Matches: 111, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
121 110 0.99
122 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.21
Consensus pattern (121 bp):
TGTGCAATAGTCCAAATGAAAGGAACTCCCTTACGCAGAAGCTTAGTGAACGGAGCTGCGATCAA
GGAGAACCATTCAACAAAATGTCGATAATATCCTGCAGCCCTAGAAAACTACGGAT
Found at i:14856312 original size:16 final size:16
Alignment explanation
Indices: 14856291--14856322 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14856281 GCAGATTGGC
14856291 AAAAGCTGAAAAGTCG
1 AAAAGCTGAAAAGTCG
*
14856307 AAAAGCTGAAACGTCG
1 AAAAGCTGAAAAGTCG
14856323 GCATTTGACG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.16, G:0.25, T:0.12
Consensus pattern (16 bp):
AAAAGCTGAAAAGTCG
Found at i:14857008 original size:29 final size:28
Alignment explanation
Indices: 14856962--14857028 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 28
14856952 TTTGCACTGT
*
14856962 ACTGATACTGTATTGGGGCTTAGGCCCAC
1 ACTG-TACTGTATTGGGGCTAAGGCCCAC
*
14856991 ACTGCTACTGT-TTAGGGGCTAAGGCCCAG
1 ACTG-TACTGTATT-GGGGCTAAGGCCCAC
14857020 ACTGTACTG
1 ACTGTACTG
14857029 ATACTAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 7 0.21
29 27 0.79
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (28 bp):
ACTGTACTGTATTGGGGCTAAGGCCCAC
Found at i:14858999 original size:2 final size:2
Alignment explanation
Indices: 14858992--14859030 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
14858982 CATGACAGTG
14858992 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14859031 GTAAGACAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14865209 original size:43 final size:43
Alignment explanation
Indices: 14865161--14865242 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
14865151 ATCTCATTTC
14865161 TCATCTCATATTCATTTCTCATATTT-TCCATTTCAATATTTTA
1 TCATCTCATATTCATTTCTCATATTTGT-CATTTCAATATTTTA
*
14865204 TCATCTCATATTCATTTCTCATCTTTGTCATTTCAATAT
1 TCATCTCATATTCATTTCTCATATTTGTCATTTCAATAT
14865243 CAATCACATA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
43 36 0.97
44 1 0.03
ACGTcount: A:0.24, C:0.22, G:0.01, T:0.52
Consensus pattern (43 bp):
TCATCTCATATTCATTTCTCATATTTGTCATTTCAATATTTTA
Found at i:14873210 original size:23 final size:24
Alignment explanation
Indices: 14873135--14873346 Score: 317
Period size: 23 Copynumber: 9.0 Consensus size: 24
14873125 GCTTTATCAT
*
14873135 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
14873160 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
14873184 ATAACTGGGGCATGAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
14873207 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
14873230 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
14873254 A-AACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
14873277 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
14873301 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
14873324 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
14873347 GCACTTCCTC
Statistics
Matches: 176, Mismatches: 7, Indels: 9
0.92 0.04 0.05
Matches are distributed among these distances:
23 90 0.51
24 74 0.42
25 12 0.07
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:14873347 original size:47 final size:48
Alignment explanation
Indices: 14873135--14873347 Score: 319
Period size: 47 Copynumber: 4.5 Consensus size: 48
14873125 GCTTTATCAT
* * *
14873135 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTA
* *
14873184 ATAACTGGGGCATGAGCCC-TTTAATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTA
*
14873230 ATAACTGGGGCATAAGCCCTTTTGA-AACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTA
14873277 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTA
14873324 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
14873348 CACTTCCTCC
Statistics
Matches: 154, Mismatches: 6, Indels: 10
0.91 0.04 0.06
Matches are distributed among these distances:
46 39 0.25
47 81 0.53
48 22 0.14
49 12 0.08
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTA
Found at i:14873418 original size:9 final size:9
Alignment explanation
Indices: 14873404--14873460 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
14873394 ATCTCATGTG
14873404 CATATCATA
1 CATATCATA
*
14873413 CATATCATGTG
1 CATATCA--TA
14873424 CATATCATA
1 CATATCATA
* *
14873433 CATGTCATGTG
1 CATATCA--TA
14873444 CATATCATA
1 CATATCATA
14873453 CATATCAT
1 CATATCAT
14873461 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:14873420 original size:20 final size:20
Alignment explanation
Indices: 14873392--14873462 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
14873382 GCATTTATGA
*
14873392 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
14873412 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
14873432 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
14873452 ACATATCATGT
1 ACATATCATGT
14873463 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:14873427 original size:11 final size:11
Alignment explanation
Indices: 14873397--14873451 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
14873387 TATGAACATC
14873397 TCATGTGCATA
1 TCATGTGCATA
*
14873408 TCA--TACATA
1 TCATGTGCATA
14873417 TCATGTGCATA
1 TCATGTGCATA
* *
14873428 TCA--TACATG
1 TCATGTGCATA
14873437 TCATGTGCATA
1 TCATGTGCATA
14873448 TCAT
1 TCAT
14873452 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:14881351 original size:23 final size:23
Alignment explanation
Indices: 14881309--14881449 Score: 257
Period size: 23 Copynumber: 6.1 Consensus size: 23
14881299 CCTAGCCTCT
14881309 TTTAATAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
14881331 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
14881354 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
14881377 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
14881401 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
14881424 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
14881447 TTT
1 TTT
14881450 TGCACTTCCT
Statistics
Matches: 115, Mismatches: 2, Indels: 3
0.96 0.02 0.03
Matches are distributed among these distances:
22 16 0.14
23 77 0.67
24 22 0.19
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:14881386 original size:47 final size:46
Alignment explanation
Indices: 14881309--14881449 Score: 257
Period size: 47 Copynumber: 3.1 Consensus size: 46
14881299 CCTAGCCTCT
14881309 TTTAATAACTGGGGCA-AAGCCCTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
*
14881354 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
14881401 TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
14881447 TTT
1 TTT
14881450 TGCACTTCCT
Statistics
Matches: 92, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
45 16 0.17
46 31 0.34
47 45 0.49
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (46 bp):
TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
Found at i:14881403 original size:70 final size:69
Alignment explanation
Indices: 14881288--14881451 Score: 276
Period size: 70 Copynumber: 2.3 Consensus size: 69
14881278 GCTTTATCAT
* *
14881288 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTAATAACTGGGGCATAAGC
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCAAAGCCCTTTAATAACTGGGGCATAAGC
14881352 CCTTTA
64 CCTTTA
14881358 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCA-AAGCCCTTTAATAACTGGGGCATAAGCC
14881423 CTTTA
65 CTTTA
14881428 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
14881452 CACTTCCTCC
Statistics
Matches: 90, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
69 21 0.23
70 69 0.77
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (69 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAGCCCTTTAATAACTGGGGCATAAGCCC
TTTA
Found at i:14881522 original size:9 final size:9
Alignment explanation
Indices: 14881508--14881564 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
14881498 ATCTCATGTG
14881508 CATATCATA
1 CATATCATA
*
14881517 CATATCATGTG
1 CATATCA--TA
14881528 CATATCATA
1 CATATCATA
* *
14881537 CATGTCATGTG
1 CATATCA--TA
14881548 CATATCATA
1 CATATCATA
14881557 CATATCAT
1 CATATCAT
14881565 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:14881524 original size:20 final size:20
Alignment explanation
Indices: 14881496--14881566 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
14881486 GCATTTATGA
*
14881496 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
14881516 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
14881536 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
14881556 ACATATCATGT
1 ACATATCATGT
14881567 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:14881531 original size:11 final size:11
Alignment explanation
Indices: 14881501--14881555 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
14881491 TATGAACATC
14881501 TCATGTGCATA
1 TCATGTGCATA
*
14881512 TCA--TACATA
1 TCATGTGCATA
14881521 TCATGTGCATA
1 TCATGTGCATA
* *
14881532 TCA--TACATG
1 TCATGTGCATA
14881541 TCATGTGCATA
1 TCATGTGCATA
14881552 TCAT
1 TCAT
14881556 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:14884703 original size:40 final size:40
Alignment explanation
Indices: 14884644--14884812 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
14884634 CGGGACTTTA
* * *
14884644 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
14884684 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
14884724 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
14884764 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
14884804 CCCGGATAT
1 CCCGGATAT
14884813 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:14886071 original size:56 final size:53
Alignment explanation
Indices: 14886008--14886116 Score: 132
Period size: 56 Copynumber: 2.0 Consensus size: 53
14885998 CCCCCTTTTC
14886008 CCTTAGTA-ATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTCTTTTCTTT
1 CCTTAGTACA-TTCGGCCAAGAAGATGGAG-AAGGATGAAC--ATTTTT-TTTTCTTT
***
14886064 CCTTAGTACATTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTTCTTT
1 CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTTTTTCTTT
14886117 TTTTTTTTTC
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
53 8 0.17
54 6 0.12
56 30 0.62
57 4 0.08
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (53 bp):
CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTTTTTCTTT
Found at i:14891098 original size:2 final size:2
Alignment explanation
Indices: 14891091--14891119 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14891081 ATGCATGTAC
14891091 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14891120 ACCTTACAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14896182 original size:45 final size:45
Alignment explanation
Indices: 14896125--14896215 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
14896115 GAACTATGTG
*
14896125 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGAC
* * *
14896170 ATCTGAATTCATTGAGTTGTGGTCTAATTTCATGATGTATGTGAC
1 ATCTGAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGAC
14896215 A
1 A
14896216 CATGTTTTGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.25, C:0.12, G:0.23, T:0.40
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGAC
Found at i:14909220 original size:40 final size:39
Alignment explanation
Indices: 14909175--14909301 Score: 121
Period size: 40 Copynumber: 3.2 Consensus size: 39
14909165 CGGAACATAA
14909175 CCGGATACAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATACAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
14909215 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATACAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
** * * * *
14909255 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATACAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
14909295 CCGGATA
1 CCGGATA
14909302 AAATTTCCAG
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATACAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:14909319 original size:40 final size:40
Alignment explanation
Indices: 14909191--14909341 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 40
14909181 ACAACCATGT
* * *
14909191 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTC-CA
** ** * *
14909231 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
14909271 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
14909311 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATA
14909342 TCATTCAATT
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
39 2 0.02
40 84 0.94
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
Found at i:14909325 original size:80 final size:80
Alignment explanation
Indices: 14909191--14909340 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
14909181 ACAACCATGT
* *
14909191 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
14909255 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * *
14909271 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
14909334 CCCGGAT
64 CCCGGAT
14909341 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:14914409 original size:27 final size:27
Alignment explanation
Indices: 14914379--14914447 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
14914369 CCCATCAAAG
* *
14914379 TATCTCGTGTTTAACCTCTCGTCAGAC
1 TATCTCGTGTTTAACATCTAGTCAGAC
* * *
14914406 TATCTCATGTTTAAAATCTAGTTAGAC
1 TATCTCGTGTTTAACATCTAGTCAGAC
*
14914433 AATCTCGTGTTTAAC
1 TATCTCGTGTTTAAC
14914448 GTCCCGTTGG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.39
Consensus pattern (27 bp):
TATCTCGTGTTTAACATCTAGTCAGAC
Found at i:14919453 original size:63 final size:63
Alignment explanation
Indices: 14919274--14919456 Score: 219
Period size: 63 Copynumber: 2.9 Consensus size: 63
14919264 ACCCTTGGAA
* * * * * *
14919274 AAGGTG-TGATGCAAGGAATGATTGTGTATGTTATGGTGCTTGTGTAAAATAAACTGGTGCTG
1 AAGGTGTTAATGCAAGGAATGATTGTGCATGTTGTGATGCTTGTGTAAAATAAATTGGAGCTG
* * *
14919336 AATGTGTTAATGCAAGGAATGATTGTGCATGCTGT-AGTGCTAGTGTAAAATAAATTGGAGCTG
1 AAGGTGTTAATGCAAGGAATGATTGTGCATGTTGTGA-TGCTTGTGTAAAATAAATTGGAGCTG
* * *
14919399 AAGGTTTTGAT-CTAAGGAATGATTGTGCATGTTGTGATGCTTGTGTCAAATAAATTGG
1 AAGGTGTTAATGC-AAGGAATGATTGTGCATGTTGTGATGCTTGTGTAAAATAAATTGG
14919457 GCTAGAACCA
Statistics
Matches: 102, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
62 6 0.06
63 95 0.93
64 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.30, T:0.34
Consensus pattern (63 bp):
AAGGTGTTAATGCAAGGAATGATTGTGCATGTTGTGATGCTTGTGTAAAATAAATTGGAGCTG
Found at i:14922345 original size:40 final size:40
Alignment explanation
Indices: 14922237--14922346 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
14922227 ATTGAATGAT
* * * * *
14922237 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
14922277 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
14922317 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
14922347 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:14922361 original size:40 final size:39
Alignment explanation
Indices: 14922237--14922386 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
14922227 ATTGAATGAT
* * * * * * *
14922237 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
14922277 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
14922317 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
14922357 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
14922387 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:14924023 original size:20 final size:20
Alignment explanation
Indices: 14923998--14924040 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
14923988 GGGTAAGCCA
14923998 TGTGGCTCGGGACACGCCCG
1 TGTGGCTCGGGACACGCCCG
*
14924018 TGTGGCTCGGGACACGCTCG
1 TGTGGCTCGGGACACGCCCG
14924038 TGT
1 TGT
14924041 CCTCAGCCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.09, C:0.30, G:0.40, T:0.21
Consensus pattern (20 bp):
TGTGGCTCGGGACACGCCCG
Found at i:14926274 original size:39 final size:39
Alignment explanation
Indices: 14926231--14926412 Score: 258
Period size: 39 Copynumber: 4.6 Consensus size: 39
14926221 TCTTTAAGCA
*
14926231 CGGATACAATTCCAGCACGAAGCTTGCGGACCTTAAGTC
1 CGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTC
14926270 CGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTC
1 CGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTC
* *
14926309 CAGATACAATTCCAGCACGAAGCCTACGGACCTTAAGTC
1 CGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTC
* * *
14926348 CGGATACAATTCCAGCACAAAGCCTGCGGGA-CTTTAGCC
1 CGGATACAATTCCAGCACGAAGCCTGC-GGACCTTAAGTC
* **
14926387 CGGATATAACACCAGCACGAATGCCT
1 CGGATACAATTCCAGCACGAA-GCCT
14926413 TCAGGGCTTA
Statistics
Matches: 129, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 122 0.95
40 7 0.05
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.18
Consensus pattern (39 bp):
CGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTC
Found at i:14926327 original size:78 final size:78
Alignment explanation
Indices: 14926170--14926376 Score: 263
Period size: 78 Copynumber: 2.6 Consensus size: 78
14926160 CACCAACACA
* * * * * * * * * *
14926170 AAGCCTACGGGTCTTTAAGCCCAGATATAATTCCAGCATATAGCCTGCAGGTCTTTAAG-CACGG
1 AAGCCTAC-GGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGC-GGACCTTAAGTC-CAG
14926234 ATACAATTCCAGCACG
63 ATACAATTCCAGCACG
* * *
14926250 AAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCAGATA
1 AAGCCTACGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGACCTTAAGTCCAGATA
14926315 CAATTCCAGCACG
66 CAATTCCAGCACG
14926328 AAGCCTACGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGG
1 AAGCCTACGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGG
14926377 GACTTTAGCC
Statistics
Matches: 110, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
78 72 0.65
79 32 0.29
80 6 0.05
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (78 bp):
AAGCCTACGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGACCTTAAGTCCAGATA
CAATTCCAGCACG
Found at i:14926402 original size:78 final size:79
Alignment explanation
Indices: 14926160--14926478 Score: 245
Period size: 78 Copynumber: 4.1 Consensus size: 79
14926150 CGAATTCAAT
* * * * * * * * * * *
14926160 CACCAACACAAAGCCTACGGGTCTTTAAGCCCAGATATAATTCCAGCATATAGCCTGCAGGTCTT
1 CACCAGCACGAAGCCTACAGGACCTTAAGCCCGGATACAATTCCAGCACAAAGCCTGCGGGACTT
*
14926225 TAAGCACGGATACAA
66 T-AGCCCGGATACAA
** * * * *
14926240 TTCCAGCACGAAGCTTGC-GGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGC-GGACCT
1 CACCAGCACGAAGCCTACAGGACCTTAAGCCCGGATACAATTCCAGCACAAAGCCTGCGGGA-CT
* * *
14926303 TAAGTCCAGATACAA
65 TTAGCCCGGATACAA
** *
14926318 TTCCAGCACGAAGCCTAC-GGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGACTT
1 CACCAGCACGAAGCCTACAGGACCTTAAGCCCGGATACAATTCCAGCACAAAGCCTGCGGGACTT
*
14926382 TAGCCCGGATATAA
66 TAGCCCGGATACAA
* * * ** * * *
14926396 CACCAGCACGAATGCCTTCAGG-GCTT-AGCCCGGATATAACACTAGCACGAATGCCTTCGGGAC
1 CACCAGCACGAA-GCCTACAGGACCTTAAGCCCGGATACAATTCCAGCAC-AAAGCCTGCGGGAC
* *
14926459 -TTAGCCTGGATATAA
64 TTTAGCCCGGATACAA
14926474 CACCA
1 CACCA
14926479 TTATAAAGTC
Statistics
Matches: 196, Mismatches: 38, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
78 125 0.64
79 57 0.29
80 14 0.07
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (79 bp):
CACCAGCACGAAGCCTACAGGACCTTAAGCCCGGATACAATTCCAGCACAAAGCCTGCGGGACTT
TAGCCCGGATACAA
Found at i:14926424 original size:39 final size:39
Alignment explanation
Indices: 14926320--14926478 Score: 173
Period size: 39 Copynumber: 4.1 Consensus size: 39
14926310 AGATACAATT
* * * **
14926320 CCAGCACGAA-GCCTAC-GGACCTTAAGTCCGGATACAATT
1 CCAGCACGAATGCCTTCGGGA-CTT-AGCCCGGATATAACA
* *
14926359 CCAGCAC-AAAGCCTGCGGGACTTTAGCCCGGATATAACA
1 CCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAACA
14926398 CCAGCACGAATGCCTTCAGGG-CTTAGCCCGGATATAACA
1 CCAGCACGAATGCCTTC-GGGACTTAGCCCGGATATAACA
* *
14926437 CTAGCACGAATGCCTTCGGGACTTAGCCTGGATATAACA
1 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
14926476 CCA
1 CCA
14926479 TTATAAAGTC
Statistics
Matches: 104, Mismatches: 10, Indels: 12
0.83 0.08 0.10
Matches are distributed among these distances:
38 5 0.05
39 83 0.80
40 13 0.12
41 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (39 bp):
CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
Found at i:14926584 original size:28 final size:28
Alignment explanation
Indices: 14926551--14926623 Score: 110
Period size: 28 Copynumber: 2.6 Consensus size: 28
14926541 ATTTAATCAT
*
14926551 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGTCATTC
* *
14926579 TCAATATCTCGCACATTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGTCATTC
*
14926607 TCAATATTTCGTACACT
1 TCAATATTTCGCACACT
14926624 GAGTACCATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.38
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGTCATTC
Found at i:14932076 original size:12 final size:12
Alignment explanation
Indices: 14932059--14932084 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14932049 ACCAACAAAG
14932059 AAGTAAATAAAT
1 AAGTAAATAAAT
14932071 AAGTAAATAAAT
1 AAGTAAATAAAT
14932083 AA
1 AA
14932085 AACTAAAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (12 bp):
AAGTAAATAAAT
Found at i:14934104 original size:23 final size:23
Alignment explanation
Indices: 14934041--14934105 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
14934031 AGGCAAATTA
* *
14934041 TTTGTGAAGCCTTTGTGACGTAT
1 TTTGTGAAGCCTTTGTGGCATAT
*
14934064 TCTGTGAAGCCTTTGTGGCATAT
1 TTTGTGAAGCCTTTGTGGCATAT
*
14934087 TTTGTAAAGCCTTTGTGGC
1 TTTGTGAAGCCTTTGTGGC
14934106 TTACTCTGTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.17, C:0.15, G:0.26, T:0.42
Consensus pattern (23 bp):
TTTGTGAAGCCTTTGTGGCATAT
Found at i:14934115 original size:23 final size:23
Alignment explanation
Indices: 14934039--14934121 Score: 87
Period size: 23 Copynumber: 3.7 Consensus size: 23
14934029 TTAGGCAAAT
* * *
14934039 TATT-TGTGAAGCCTTTGTGACG
1 TATTCTGTAAAGCCTTTGTGGCA
*
14934061 TATTCTGTGAAGCCTTTGTGGCA
1 TATTCTGTAAAGCCTTTGTGGCA
* *
14934084 TATTTTGTAAAGCCTTTGTGGCT
1 TATTCTGTAAAGCCTTTGTGGCA
* *
14934107 TACTCTGTAACGCCT
1 TATTCTGTAAAGCCT
14934122 AAATGGCTAG
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
22 4 0.08
23 48 0.92
ACGTcount: A:0.18, C:0.18, G:0.23, T:0.41
Consensus pattern (23 bp):
TATTCTGTAAAGCCTTTGTGGCA
Found at i:14935499 original size:19 final size:19
Alignment explanation
Indices: 14935477--14935520 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
14935467 ATTTTTTCAT
*
14935477 TTTATTTTAATAATAAATA
1 TTTATTATAATAATAAATA
*
14935496 TTTATTATAATTATAAATA
1 TTTATTATAATAATAAATA
14935515 TATTAT
1 T-TTAT
14935521 AGTATAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTATTATAATAATAAATA
Found at i:14938602 original size:14 final size:15
Alignment explanation
Indices: 14938569--14938604 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
14938559 AGATTATATT
14938569 ATTACAAAAGGAAAG
1 ATTACAAAAGGAAAG
*
14938584 TTTACAAAA-GAAAG
1 ATTACAAAAGGAAAG
14938598 ATTACAA
1 ATTACAA
14938605 GGAGAGGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.58, C:0.08, G:0.14, T:0.19
Consensus pattern (15 bp):
ATTACAAAAGGAAAG
Found at i:14939914 original size:28 final size:27
Alignment explanation
Indices: 14939883--14939949 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 27
14939873 TATATATATA
* *
14939883 TATTTTATTTTTAATCATATTTACATTT
1 TATTTTATTTTTAAT-ATAATCACATTT
* *
14939911 TATTTTCAGTTTTAATATAATCACTTTT
1 TATTTT-ATTTTTAATATAATCACATTT
*
14939939 TATTATATTTT
1 TATTTTATTTT
14939950 CAATTTGTGT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
27 4 0.12
28 20 0.62
29 8 0.25
ACGTcount: A:0.28, C:0.07, G:0.01, T:0.63
Consensus pattern (27 bp):
TATTTTATTTTTAATATAATCACATTT
Found at i:14941217 original size:14 final size:14
Alignment explanation
Indices: 14941194--14941235 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
14941184 TTGAAATATC
14941194 TTCTTCTTGTAATCT
1 TTCTT-TTGTAATCT
*
14941209 TTCTTTTGTAAACT
1 TTCTTTTGTAATCT
14941223 TTCCTTTTGTAAT
1 TT-CTTTTGTAAT
14941236 AATATAATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 10 0.42
15 14 0.58
ACGTcount: A:0.17, C:0.17, G:0.07, T:0.60
Consensus pattern (14 bp):
TTCTTTTGTAATCT
Found at i:14945219 original size:17 final size:17
Alignment explanation
Indices: 14945199--14945232 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
14945189 AATCAATTAA
14945199 TCTTTCTAAATAAGGCC
1 TCTTTCTAAATAAGGCC
14945216 TCTTTCTAAATAAGGCC
1 TCTTTCTAAATAAGGCC
14945233 ACGAGACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (17 bp):
TCTTTCTAAATAAGGCC
Found at i:14948830 original size:119 final size:115
Alignment explanation
Indices: 14948481--14948831 Score: 314
Period size: 119 Copynumber: 3.0 Consensus size: 115
14948471 AGAGACATCT
* * * * * *
14948481 CAAACAATGCTACCTTATCTCAAAATCATAAATTTCAAATCTTTACACTTTGAAGTAACAATAAA
1 CAAACACTGGTACCTTATGTCAAAATCATAAA-TTCAAATATTTACATTTTAAAGTAACAATAAA
* * * * * * *
14948546 AGGAATTTA-TCATTGTACAGACACATATATGTCCTTGGTCT-CACAGACATGGAC
65 TGCAA-TTAGTCATAGTACACACACACA-ACGT-CTTGGTCTACAGAGACA--GAC
* * * *
14948600 CAAACATTGGTACCTTATGTCAAAATGATAAAATTCAAATATTTACATTTTACAGCAACAATAAA
1 CAAACACTGGTACCTTATGTCAAAATCAT-AAATTCAAATATTTACATTTTAAAGTAACAATAAA
* * * * *
14948665 TGCAATTTGCCATAGAACACACA-AGCGAATCTGTCTTTGTCT-CAGAGACAGAT
65 TGCAATTAGTCATAGTACACACACA-C-AA-C-GTCTTGGTCTACAGAGACAGAC
* *
14948718 CGAACCCTGGTACCTTATGTCAAAAATCATGAAATTCAAATATTTACATTTTAAAGTAACAATAA
1 CAAACACTGGTACCTTATGTC-AAAATCAT-AAATTCAAATATTTACATTTTAAAGTAACAATAA
*
14948783 ATGCAATTAGTCATAGTACACAGACACACACGTCTTGGTCTAACAGAGA
64 ATGCAATTAGTCATAGTACACACACACA-ACGTCTTGGTCT-ACAGAGA
14948832 GATCAGATAT
Statistics
Matches: 188, Mismatches: 33, Indels: 22
0.77 0.14 0.09
Matches are distributed among these distances:
117 9 0.05
118 25 0.13
119 133 0.71
120 19 0.10
121 2 0.01
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (115 bp):
CAAACACTGGTACCTTATGTCAAAATCATAAATTCAAATATTTACATTTTAAAGTAACAATAAAT
GCAATTAGTCATAGTACACACACACAACGTCTTGGTCTACAGAGACAGAC
Found at i:14955701 original size:11 final size:11
Alignment explanation
Indices: 14955685--14955709 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14955675 ACAATACCTT
14955685 AAATATGTGAA
1 AAATATGTGAA
14955696 AAATATGTGAA
1 AAATATGTGAA
14955707 AAA
1 AAA
14955710 CTAATACACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.16, T:0.24
Consensus pattern (11 bp):
AAATATGTGAA
Found at i:14960853 original size:51 final size:51
Alignment explanation
Indices: 14960777--14960877 Score: 193
Period size: 51 Copynumber: 2.0 Consensus size: 51
14960767 GATTTTTGCA
14960777 TATTATATGATTATGTCATATTGTAACTTAGATTAGTGAATTAGAAAAGGC
1 TATTATATGATTATGTCATATTGTAACTTAGATTAGTGAATTAGAAAAGGC
*
14960828 TATTATATGATTATGTCTTATTGTAACTTAGATTAGTGAATTAGAAAAGG
1 TATTATATGATTATGTCATATTGTAACTTAGATTAGTGAATTAGAAAAGG
14960878 TCAAATGGTT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.37, C:0.05, G:0.18, T:0.41
Consensus pattern (51 bp):
TATTATATGATTATGTCATATTGTAACTTAGATTAGTGAATTAGAAAAGGC
Found at i:14962777 original size:2 final size:2
Alignment explanation
Indices: 14962770--14962798 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14962760 TCATTACTTT
14962770 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14962799 TATTTTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14964926 original size:29 final size:29
Alignment explanation
Indices: 14964884--14964942 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 29
14964874 TTGACTGTCT
14964884 TAATATTTATTATGTAGGG-TTTTCAATTA
1 TAATATTTATTATGT-GGGATTTTCAATTA
*
14964913 TAATATTTATTATGTGGGATTTTTAATTA
1 TAATATTTATTATGTGGGATTTTCAATTA
14964942 T
1 T
14964943 GTTTCTTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
28 3 0.11
29 25 0.89
ACGTcount: A:0.31, C:0.02, G:0.14, T:0.54
Consensus pattern (29 bp):
TAATATTTATTATGTGGGATTTTCAATTA
Found at i:14968421 original size:40 final size:40
Alignment explanation
Indices: 14968362--14968530 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
14968352 CGGGACTTTA
* * *
14968362 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
14968402 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
14968442 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
14968482 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
14968522 CCCGGATAT
1 CCCGGATAT
14968531 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:14976503 original size:40 final size:39
Alignment explanation
Indices: 14976372--14976546 Score: 169
Period size: 39 Copynumber: 4.5 Consensus size: 39
14976362 ACCAAGGCCA
* * * * *
14976372 CGGGACTTA-CCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATAT-ACTACTAGCACAATTGCCTT
* *
14976411 CGGGTCTTAGCCCGGATA-ACAACTTGCACGAA-TGCCTT
1 CGGGTCTTAGCCCGGATATACTACTAGCAC-AATTGCCTT
14976449 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATA-CTACTAGCACAATTGCCTT
* * * * *
14976489 CGGGTCTTAACCCGGATATAAT-TTCAGCATAATTGTCTT
1 CGGGTCTTAGCCCGGATATACTACT-AGCACAATTGCCTT
*
14976528 CGGGGCTTAGCCCGGATAT
1 CGGGTCTTAGCCCGGATAT
14976547 CATTCAATTT
Statistics
Matches: 118, Mismatches: 12, Indels: 12
0.83 0.08 0.08
Matches are distributed among these distances:
38 34 0.29
39 43 0.36
40 41 0.35
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
CGGGTCTTAGCCCGGATATACTACTAGCACAATTGCCTT
Found at i:14976542 original size:39 final size:40
Alignment explanation
Indices: 14976372--14976546 Score: 171
Period size: 40 Copynumber: 4.5 Consensus size: 40
14976362 ACCAAGGCCA
* * * * * *
14976372 CGGGACTTA-CCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
* *
14976411 CGGGTCTTAGCCCGG--ATAACAACTTGCACGAA-TGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCAC-AATTGCCTT
*
14976449 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
* * * * *
14976489 CGGGTCTTAACCCGGATATAATTTC-AGCATAATTGTCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
*
14976528 CGGGGCTTAGCCCGGATAT
1 CGGGTCTTAGCCCGGATAT
14976547 CATTCAATTT
Statistics
Matches: 116, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 32 0.28
39 41 0.35
40 43 0.37
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
Found at i:14983378 original size:80 final size:80
Alignment explanation
Indices: 14983294--14983442 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
14983284 TATGGTAACC
* * * *
14983294 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
14983358 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
14983374 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
14983439 CCGG
66 CCGG
14983443 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:14983384 original size:40 final size:38
Alignment explanation
Indices: 14983335--14983442 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
14983325 ATCACGATTT
*
14983335 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
14983375 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
14983415 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
14983443 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:14990929 original size:42 final size:42
Alignment explanation
Indices: 14990850--14990957 Score: 137
Period size: 42 Copynumber: 2.6 Consensus size: 42
14990840 CATCGAATAC
* * * *
14990850 CCACACGGCCTGG-GACACGGGCGTATCATTGGCCGTGTGAG
1 CCACACGGCATGGCCACACGGGCATTTCATTGGCCGTGTGAG
* *
14990891 CCACACGGCATGGCCACATGGGCATTTCATTGGTCGTGTGAG
1 CCACACGGCATGGCCACACGGGCATTTCATTGGCCGTGTGAG
* *
14990933 CCACACGGCTTGGCCATACGGGCAT
1 CCACACGGCATGGCCACACGGGCAT
14990958 GTGTCCCCTG
Statistics
Matches: 57, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
41 12 0.21
42 45 0.79
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (42 bp):
CCACACGGCATGGCCACACGGGCATTTCATTGGCCGTGTGAG
Found at i:14994944 original size:33 final size:34
Alignment explanation
Indices: 14994878--14994944 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
14994868 GCAATATCCA
*
14994878 TGTGGGCCTTAGCCTAATACAGTAACAGTATCAG
1 TGTGGGCCTTAGCCCAATACAGTAACAGTATCAG
* *
14994912 TGTGGGCCTTAGCCCATTTCAGT-ACAGTATCAG
1 TGTGGGCCTTAGCCCAATACAGTAACAGTATCAG
14994945 AAATGCATAC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 10 0.33
34 20 0.67
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.28
Consensus pattern (34 bp):
TGTGGGCCTTAGCCCAATACAGTAACAGTATCAG
Found at i:15010486 original size:13 final size:12
Alignment explanation
Indices: 15010470--15010517 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 12
15010460 AAAGTATATA
15010470 TTTTCTTTTTCT
1 TTTTCTTTTTCT
15010482 ATTTTCTTTCTT-T
1 -TTTTCTTT-TTCT
*
15010495 TTAGTCTTTTTCT
1 TT-TTCTTTTTCT
15010508 TTTTCTTTTT
1 TTTTCTTTTT
15010518 ACTCACTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
12 11 0.37
13 17 0.57
14 2 0.07
ACGTcount: A:0.04, C:0.15, G:0.02, T:0.79
Consensus pattern (12 bp):
TTTTCTTTTTCT
Found at i:15010516 original size:5 final size:6
Alignment explanation
Indices: 15010470--15010517 Score: 53
Period size: 6 Copynumber: 7.7 Consensus size: 6
15010460 AAAGTATATA
*
15010470 TTTTCT TTTTCT ATTTTCT TTCTT-T TTAGTCT TTTTCT TTTTCT TTTT
1 TTTTCT TTTTCT -TTTTCT TT-TTCT TT-TTCT TTTTCT TTTTCT TTTT
15010518 ACTCACTTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
6 25 0.69
7 11 0.31
ACGTcount: A:0.04, C:0.15, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTTCT
Found at i:15011835 original size:6 final size:6
Alignment explanation
Indices: 15011794--15011886 Score: 64
Period size: 6 Copynumber: 15.5 Consensus size: 6
15011784 AAATACAGTA
* * * *
15011794 ACAGAT AC-GAAT ACAGAT GCAGTT ACAGAT ATAGAT ACAGAT ATAGAT
1 ACAGAT ACAG-AT ACAGAT ACAGAT ACAGAT ACAGAT ACAGAT ACAGAT
* * * * * *
15011842 GCAAAT ATAGAT ACTA-AT ACAGAT ACTGAT ACTGAT ACTGAT ACA
1 ACAGAT ACAGAT AC-AGAT ACAGAT ACAGAT ACAGAT ACAGAT ACA
15011887 AATCCACCAT
Statistics
Matches: 67, Mismatches: 16, Indels: 8
0.74 0.18 0.09
Matches are distributed among these distances:
5 2 0.03
6 63 0.94
7 2 0.03
ACGTcount: A:0.45, C:0.14, G:0.16, T:0.25
Consensus pattern (6 bp):
ACAGAT
Found at i:15019020 original size:47 final size:47
Alignment explanation
Indices: 15018925--15019053 Score: 136
Period size: 47 Copynumber: 2.7 Consensus size: 47
15018915 GTGTGAACAA
*** *
15018925 TACCTTGATTTGGCTACAGGCCATGATATAGGTATTTTGAAAGGAGT
1 TACCTTGATTTGGCTACAGGCCATGATATAGGTACCCTGAAAGAAGT
* * * *
15018972 TACCTTGATTCGGCTACAGGCCGTGATATAGGTGCCCT-AAGATAAGT
1 TACCTTGATTTGGCTACAGGCCATGATATAGGTACCCTGAA-AGAAGT
* *
15019019 TACCTTAATTTGGCTAC-GAGCCATGGTATAGGTAC
1 TACCTTGATTTGGCTACAG-GCCATGATATAGGTAC
15019054 TTATTGATTG
Statistics
Matches: 67, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
46 3 0.04
47 64 0.96
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (47 bp):
TACCTTGATTTGGCTACAGGCCATGATATAGGTACCCTGAAAGAAGT
Found at i:15025977 original size:43 final size:43
Alignment explanation
Indices: 15025924--15026005 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
15025914 GATATATGTG
15025924 GCATCCGAGCTCGTTGAGTGGTCCGAA-TTCATTATGGATGCAA
1 GCATCCGAGCTCGTTGAGTGGTCC-AAGTTCATTATGGATGCAA
*
15025967 GCATCTGAGCTCGTTGAGTGGTCCAAGTTCATTATGGAT
1 GCATCCGAGCTCGTTGAGTGGTCCAAGTTCATTATGGAT
15026006 TCGATACATG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
42 2 0.05
43 35 0.95
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAGTGGTCCAAGTTCATTATGGATGCAA
Found at i:15031900 original size:21 final size:21
Alignment explanation
Indices: 15031874--15031916 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
15031864 TCCGATAGAG
15031874 TAATTCAGATACTTGAAGATA
1 TAATTCAGATACTTGAAGATA
15031895 TAATTCAGATACTTGAAGATA
1 TAATTCAGATACTTGAAGATA
15031916 T
1 T
15031917 GCTCAGATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.35
Consensus pattern (21 bp):
TAATTCAGATACTTGAAGATA
Found at i:15037851 original size:47 final size:47
Alignment explanation
Indices: 15037797--15037926 Score: 143
Period size: 47 Copynumber: 2.8 Consensus size: 47
15037787 GTATGAATAA
** * ** *
15037797 TACCTTGATTTTTCTACGGGCCATGATATAGGTATTTTGAAAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTACTCCGAAAGAAGT
* * * * * *
15037844 TACCTTGATTCGGCTACGGGCCGTGACATAGGTGCTCCGAGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTACTCCGAAAGAAGT
*
15037891 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTACT
15037927 TATCGATTAT
Statistics
Matches: 66, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGATATAGGTACTCCGAAAGAAGT
Found at i:15040483 original size:48 final size:46
Alignment explanation
Indices: 15040366--15040487 Score: 136
Period size: 46 Copynumber: 2.6 Consensus size: 46
15040356 ACATTATGAG
* * * * *
15040366 AGCCAGTGTAAGACATATCTTGGACATGCATCGGCATTGAGACGAG
1 AGCCAGTGTAAGACATATCTGGGACATGCATCAGCATCGAGAAGAA
* * * *
15040412 AGCTAGTGTAAGACATATTTGGGACATGCATCAGCCTCGAGATATACA
1 AGCCAGTGTAAGACATATCTGGGACATGCATCAGCATCGAGA-AGA-A
*
15040460 AGCCAGTGTAAGACCTATCTGGGACATG
1 AGCCAGTGTAAGACATATCTGGGACATG
15040488 GCGTCAGCTT
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
46 36 0.58
47 1 0.02
48 25 0.40
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (46 bp):
AGCCAGTGTAAGACATATCTGGGACATGCATCAGCATCGAGAAGAA
Found at i:15040572 original size:49 final size:49
Alignment explanation
Indices: 15040505--15040679 Score: 160
Period size: 49 Copynumber: 3.6 Consensus size: 49
15040495 CTTGTTGTGT
* *
15040505 GTCAGTGTAAAACCTGTCTAGGACATGGCATCGACAC-AGATAGATGAGA
1 GTCAGTGTAAGACCTGTCTAGGACATGGCATCGAC-CTAGATAGATGAAA
* * * *
15040554 G-CTAGTGTAAGACTTGTCTAGGACACGGCATCGACCTCGATATATGAAA
1 GTC-AGTGTAAGACCTGTCTAGGACATGGCATCGACCTAGATAGATGAAA
* * * * * **
15040603 GTCAGTCTAAGACCTGTCTGGGACATGACATCGACTTTGAT-G-TGTTA
1 GTCAGTGTAAGACCTGTCTAGGACATGGCATCGACCTAGATAGATGAAA
* *
15040650 GCCAGTGTAAGACGATGTCTAGGACATGGC
1 GTCAGTGTAAGAC-CTGTCTAGGACATGGC
15040680 GTCGGCATCT
Statistics
Matches: 101, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
47 14 0.14
48 15 0.15
49 71 0.70
50 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTAGGACATGGCATCGACCTAGATAGATGAAA
Found at i:15044200 original size:22 final size:21
Alignment explanation
Indices: 15044153--15044217 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 21
15044143 GCCAAAAGTG
15044153 TTAATTAA-GATTAATGT-TAA
1 TTAATTAATGATTAAT-TATAA
*
15044173 TGAATTAATGATTTAATTATAA
1 TTAATTAATGA-TTAATTATAA
* *
15044195 TTAATTAATAAGTTAATCATAA
1 TTAATTAATGA-TTAATTATAA
15044217 T
1 T
15044218 ATATAAGTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 7 0.19
21 3 0.08
22 27 0.73
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.45
Consensus pattern (21 bp):
TTAATTAATGATTAATTATAA
Found at i:15050223 original size:35 final size:37
Alignment explanation
Indices: 15050152--15050249 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
15050142 ATAATTTTCA
15050152 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
15050190 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
15050225 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
15050250 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:15050249 original size:17 final size:19
Alignment explanation
Indices: 15050152--15050242 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
15050142 ATAATTTTCA
15050152 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
15050171 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
15050190 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
15050207 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
15050225 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
15050243 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:15050268 original size:22 final size:22
Alignment explanation
Indices: 15050152--15050265 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
15050142 ATAATTTTCA
15050152 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
15050171 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
15050190 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
15050207 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
15050225 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
15050247 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
15050266 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:15058948 original size:89 final size:87
Alignment explanation
Indices: 15058819--15058980 Score: 209
Period size: 89 Copynumber: 1.8 Consensus size: 87
15058809 ATTCGACGGA
* *
15058819 GAGCAGATCGAACACATAGCAGATCTAACCTTCAGATGTTTTCACATCGAAGTAGATCCAAGATG
1 GAGCAGATCGAACACATAGCAGATCTAACCTTCAGATGTTTACAC-T-GAAGCAGATCCAAGATG
15058884 ATTTGGCATCCTTGCATTGACAAG
64 ATTTGGCATCCTTGCATTGACAAG
* * ** * * *
15058908 GAGCAGATCGAAGACATAGCAGATTTGGCTTTCACG-TGTTTACGCTGAAGCAGATCTAAGATGA
1 GAGCAGATCGAACACATAGCAGATCTAACCTTCA-GATGTTTACACTGAAGCAGATCCAAGATGA
15058972 TTTGGCATC
65 TTTGGCATC
15058981 TCTGTACTAT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
87 25 0.40
88 1 0.02
89 36 0.57
90 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (87 bp):
GAGCAGATCGAACACATAGCAGATCTAACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATCCTTGCATTGACAAG
Found at i:15059124 original size:78 final size:78
Alignment explanation
Indices: 15059013--15059383 Score: 582
Period size: 78 Copynumber: 4.8 Consensus size: 78
15059003 CGAATAAACA
** * * *
15059013 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
15059078 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
15059091 GATTTGGGATCTCTGTATTAAACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
15059156 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * *
15059169 GATTTGGCATCTCTGTAATAGACAGGGAACAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
15059234 GCAGATCCAAGGT
66 GCAGATCCAAGAT
*
15059247 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
15059311 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* *
15059325 AATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTAACCTTC
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTC
15059384 GGATGTTTTC
Statistics
Matches: 268, Mismatches: 23, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
77 1 0.00
78 266 0.99
79 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.24
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:15059480 original size:89 final size:88
Alignment explanation
Indices: 15059308--15059518 Score: 232
Period size: 89 Copynumber: 2.4 Consensus size: 88
15059298 GGACCTTCAT
* ***
15059308 TGAAGCAGATCCAAGATAATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAG
1 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGAAAAGGAGCAGATCGAAGACATAGCAG
**
15059373 ATCTAACCTTCGGATGTTT-TCAC
66 ATCTAACCTTCACATGTTTAT-AC
15059396 ATCGAAGCAGATCCAAGATGATTTGGCATC-CT-TACATT-GAAAAGGAGCAGATCGAAGACATA
1 -T-GAAGCAGATCCAAGATGATTTGGCATCTCTGT--ATTAGAAAAGGAGCAGATCGAAGACATA
* ** * * *
15059458 GCAGATTTGGCTTTCACCTGTTTATGC
62 GCAGATCTAACCTTCACATGTTTATAC
*
15059485 TGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
1 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
15059519 CTGTCAGAGA
Statistics
Matches: 103, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
87 27 0.26
88 4 0.04
89 42 0.41
90 30 0.29
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (88 bp):
TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGAAAAGGAGCAGATCGAAGACATAGCAG
ATCTAACCTTCACATGTTTATAC
Found at i:15059655 original size:78 final size:78
Alignment explanation
Indices: 15059545--15059832 Score: 342
Period size: 78 Copynumber: 3.5 Consensus size: 78
15059535 CGAAGAAACA
** * *
15059545 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTAAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTAAA
*
15059610 GCAGATCTAAGAT
66 GCAGATCCAAGAT
* * * * *
15059623 GATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGAAACAGCAGATATGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTAAA
15059688 GCAGATCCAAGAT
66 GCAGATCCAAGAT
*
15059701 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTCCATGTGT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCA-----
15059766 TTACATCGAGGCAGATCCAAGAT
61 TTA-A---A-GCAGATCCAAGAT
*
15059789 GAAAAATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGA
1 G----ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGA
15059833 TAACAGATTT
Statistics
Matches: 179, Mismatches: 17, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
78 123 0.69
83 2 0.01
84 1 0.01
87 1 0.01
88 14 0.08
92 38 0.21
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.24
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTAAA
GCAGATCCAAGAT
Found at i:15059848 original size:45 final size:45
Alignment explanation
Indices: 15059701--15059912 Score: 218
Period size: 45 Copynumber: 4.7 Consensus size: 45
15059691 GATCCAAGAT
*
15059701 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * *
15059748 GATCTGACCTC-CATGTGTTTACATC-GAG-GCAGATCCAAGATGAA-A
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGAT-AACA
* *
15059793 AATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* *
15059838 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
*
15059882 GATTTGGCATCTCTGTATTAGACGGGAAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCA
15059913 AATCAAAAAT
Statistics
Matches: 135, Mismatches: 22, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 41 0.30
45 62 0.46
46 3 0.02
47 21 0.16
48 6 0.04
49 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Done.