Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 510 of 770
Found at i:157966301 original size:27 final size:27
Alignment explanation
Indices: 157966136--157966518 Score: 159
Period size: 27 Copynumber: 14.2 Consensus size: 27
157966126 ATTACCGTTT
* ****
157966136 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
****
157966163 TACCCTCGATTTA-AAGAATTACCGTTT
1 TACCCTCGATTTACAA-AATTACCAAAA
* ***
157966190 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * ***
157966217 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * *****
157966244 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
*
157966271 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
157966298 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* * *
157966325 TACCCTCGA-TCAGTAAAATTACCAACA
1 TACCCTCGATTTA-CAAAATTACCAAAA
* * * ** * *
157966352 TA-CCTTGGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
157966378 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTACAAAATTACCAAAA
* ** *
157966405 TACCC-CTAGTTTGTAAAGTTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* *** * *
157966432 TACCACT-GGTTTGTGAAATTATCGAAA
1 TACC-CTCGATTTACAAAATTACCAAAA
** **
157966459 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
*
157966486 TACCC-CTGATTTACAAAATTACAAAAA
1 TACCCTC-GATTTACAAAATTACCAAAA
157966513 TACCCT
1 TACCCT
157966519 TGACTTTCTA
Statistics
Matches: 291, Mismatches: 53, Indels: 23
0.79 0.14 0.06
Matches are distributed among these distances:
26 22 0.08
27 267 0.92
28 2 0.01
ACGTcount: A:0.36, C:0.22, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:157966302 original size:81 final size:81
Alignment explanation
Indices: 157966038--157966321 Score: 327
Period size: 81 Copynumber: 3.5 Consensus size: 81
157966028 AATACTTCAG
* ** * * *
157966038 TTTACCAAATTACTGAAATGCCCTCGATTTGCAGAATTACCATTTTACCCTCGATTTATAGAATT
1 TTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAAAGAATT
*
157966103 ACCGTTTTA-CCTTGA
66 ACCGTTTTACCCTCGA
* * **** *
157966118 TTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAAAGAATT
1 TTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAAAGAATT
157966183 ACCGTTTTACCCTCGA
66 ACCGTTTTACCCTCGA
* *** * * *
157966199 TTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAGAATT
1 TTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAAAGAATT
*
157966264 ACTGTTTTACCCTCGA
66 ACCGTTTTACCCTCGA
* * * *
157966280 TTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCA
1 TTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCA
157966322 AAATACCCTC
Statistics
Matches: 175, Mismatches: 28, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
80 63 0.36
81 112 0.64
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.38
Consensus pattern (81 bp):
TTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAAAGAATT
ACCGTTTTACCCTCGA
Found at i:157966329 original size:54 final size:54
Alignment explanation
Indices: 157966271--157966600 Score: 226
Period size: 54 Copynumber: 6.1 Consensus size: 54
157966261 ATTACTGTTT
**
157966271 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * * * * * *
157966325 TACCCTCGA-TCAGTAAAATTACCAACATA-CCTTGGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTA-CAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
* ** * * * *
157966378 TACCC-CTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAGTTACCAAAA
1 TACCCTC-GATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
* *** * **
157966432 TACCACT-GGTTTGTGAAATTA-TCGAAATACCCTTAATTTGTAAAATTACCAAAA
1 TACC-CTCGATTTACAAAATTACT-AAAATACCCTTGGTTTGTAAAATTACCAAAA
* * * *
157966486 TACCC-CTGATTTACAAAATTACAAAAATACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTC-GATTTACAAAATTACTAAAATACCCTTG-GTTTGT-AAAATTACCA-AAA
* * * * * *
157966542 TACCATTGGTTTACAAAATTACTGAAATA-CCTTGGTTTGTAGATTTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
*
157966595 CACCCT
1 TACCCT
157966601 TGTAGGATGA
Statistics
Matches: 214, Mismatches: 47, Indels: 31
0.73 0.16 0.11
Matches are distributed among these distances:
52 1 0.00
53 55 0.26
54 114 0.53
55 11 0.05
56 33 0.15
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
Found at i:157966381 original size:53 final size:53
Alignment explanation
Indices: 157966285--157966408 Score: 133
Period size: 53 Copynumber: 2.3 Consensus size: 53
157966275 CTCGATTTAC
* *
157966285 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATA-CCTTGGTCTACAAAATTACCAAAATACCCCT-GATCAGT
* ** * * * **
157966339 AAAATTACCAACATACCTTGGTCTGTAAAATTGCTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCTTGGTCTACAAAATTACCAAAATACCCCTGATCAGT
157966392 AAAATTACCAAAATACC
1 AAAATTACCAAAATACC
157966409 CCTAGTTTGT
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
53 41 0.71
54 17 0.29
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACCAAAATACCTTGGTCTACAAAATTACCAAAATACCCCTGATCAGT
Found at i:157966421 original size:80 final size:81
Alignment explanation
Indices: 157966285--157966492 Score: 233
Period size: 80 Copynumber: 2.6 Consensus size: 81
157966275 CTCGATTTAC
** *
157966285 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCGATCAGTAAAATTACCA
1 AAAATT-CTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGATCAGTAAAATTACCA
* *
157966349 ACATACC-TTGGTCTGT
65 AAATACCACTGGTCTGT
* ** *
157966365 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAG-TTTGTAAAGTTACCA
1 AAAATT-CTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGATCAGTAAAATTACCA
*
157966429 AAATACCACTGGTTTGT
65 AAATACCACTGGTCTGT
* * * **
157966446 GAAATTATCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCT
1 AAAATTCT-AAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCT
157966493 GATTTACAAA
Statistics
Matches: 108, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
80 57 0.53
81 51 0.47
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (81 bp):
AAAATTCTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGATCAGTAAAATTACCAA
AATACCACTGGTCTGT
Found at i:157966568 original size:27 final size:26
Alignment explanation
Indices: 157966529--157966579 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 26
157966519 TGACTTTCTA
157966529 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACC-TTGGTTTAC
157966556 AAAATTACT-GAAATACCTTGGTTT
1 AAAATTA-TAGAAATACCTTGGTTT
157966580 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 7 0.30
27 15 0.65
28 1 0.04
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (26 bp):
AAAATTATAGAAATACCTTGGTTTAC
Found at i:157966663 original size:27 final size:27
Alignment explanation
Indices: 157966633--157966693 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
157966623 ACCCCAAATA
157966633 GGTAAAAAGACCGTAA-AGCCCCTGTAG
1 GGTAAAAAGACCGTAATA-CCCCTGTAG
** * *
157966660 GGTAAAGTGACCGTAATACCCTTGTAT
1 GGTAAAAAGACCGTAATACCCCTGTAG
157966687 GGTAAAA
1 GGTAAAA
157966694 TGATGAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (27 bp):
GGTAAAAAGACCGTAATACCCCTGTAG
Found at i:157967428 original size:20 final size:20
Alignment explanation
Indices: 157967394--157967469 Score: 113
Period size: 20 Copynumber: 3.9 Consensus size: 20
157967384 GATACGTGGG
157967394 GTATGATAT--ACATGAT-T
1 GTATGATATGCACATGATAT
157967411 GATATGATATGCACATGATAT
1 G-TATGATATGCACATGATAT
157967432 GTATGATATGCACATGATAT
1 GTATGATATGCACATGATAT
*
157967452 GTATGAAATGCACATGAT
1 GTATGATATGCACATGAT
157967470 GAATTCATAA
Statistics
Matches: 54, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
17 1 0.02
18 8 0.15
20 43 0.80
21 2 0.04
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.34
Consensus pattern (20 bp):
GTATGATATGCACATGATAT
Found at i:157967430 original size:11 final size:11
Alignment explanation
Indices: 157967414--157967469 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
157967404 CATGATTGAT
157967414 ATGATATGCAC
1 ATGATATGCAC
*
157967425 ATGATATG--T
1 ATGATATGCAC
157967434 ATGATATGCAC
1 ATGATATGCAC
*
157967445 ATGATATG--T
1 ATGATATGCAC
*
157967454 ATGAAATGCAC
1 ATGATATGCAC
157967465 ATGAT
1 ATGAT
157967470 GAATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:157967594 original size:51 final size:49
Alignment explanation
Indices: 157967518--157967639 Score: 201
Period size: 51 Copynumber: 2.4 Consensus size: 49
157967508 GGAGGAAGTG
*
157967518 CAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTAC
1 CAAAAGGGCTTATGCCCCAGTTTATTGAAAA-GACTT-TGCCCCAGTTTAC
157967569 CAAAAGGGCTTATGCCCCAGTTTATTGAAAAGACTTTGCCCCAGTTTAC
1 CAAAAGGGCTTATGCCCCAGTTTATTGAAAAGACTTTGCCCCAGTTTAC
157967618 CGAAAAGGGCTT-TGCCCCAGTT
1 C-AAAAGGGCTTATGCCCCAGTT
157967640 ATTAAAGAGG
Statistics
Matches: 69, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
49 24 0.35
50 14 0.20
51 31 0.45
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (49 bp):
CAAAAGGGCTTATGCCCCAGTTTATTGAAAAGACTTTGCCCCAGTTTAC
Found at i:157967613 original size:24 final size:26
Alignment explanation
Indices: 157967519--157967639 Score: 169
Period size: 25 Copynumber: 4.8 Consensus size: 26
157967509 GAGGAAGTGC
*
157967519 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
157967545 AAAAGGGCTTATGCCCCAGTTTA-CC
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
157967570 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
157967596 AAAA-GACTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
157967620 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
157967640 ATTAAAGAGG
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
24 17 0.20
25 41 0.48
26 27 0.32
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:157967830 original size:42 final size:42
Alignment explanation
Indices: 157967783--157967872 Score: 162
Period size: 42 Copynumber: 2.1 Consensus size: 42
157967773 TAGTCTCCCC
*
157967783 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
157967825 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
157967867 AAATGG
1 AAATGG
157967873 CCCTATGGGC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:157967933 original size:31 final size:31
Alignment explanation
Indices: 157967898--157968007 Score: 175
Period size: 31 Copynumber: 3.5 Consensus size: 31
157967888 CGTTTACAAT
157967898 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGG
* *
157967929 AAAGGCTTCAGCCCAGTGATATGATTTATAG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGG
* * *
157967960 AAAGGCTTCGGCCCAGTGGTTTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGG
157967991 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
157968008 AACCGTTAAA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 72 1.00
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGG
Found at i:157976094 original size:46 final size:46
Alignment explanation
Indices: 157975923--157976092 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 46
157975913 TGTAACCCGC
* * * * * * *
157975923 CCATAAGTGAACTTGGACTCAAATCAACTAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACATTTGCAT
* * *
157975969 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC--A-GAC-ATTTGCAT
* *
157976019 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACATTTGCAT
157976062 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
157976093 TTTGAATGCC
Statistics
Matches: 100, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 2 0.02
45 1 0.01
46 54 0.54
47 25 0.25
49 2 0.02
50 6 0.06
51 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACATTTGCAT
Found at i:157983039 original size:27 final size:27
Alignment explanation
Indices: 157983001--157983299 Score: 334
Period size: 27 Copynumber: 11.2 Consensus size: 27
157982991 TGGGCCATGT
* *
157983001 ATGACTGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
*
157983028 ATGACCAAAATACCCC-ATAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* * * *
157983054 ATGACTGAAATACTCTTACAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
*
157983081 ATGACCGAAATACCCCTATAAGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* *
157983108 ATGATCGAAATACCCCTATAAGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
157983135 ATGACCGAAATA-CCC-ATAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* * * * *
157983160 ATGACCAAAATACTCTTATAAGTTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
*
157983187 ATGACCGAAATACCCCTATAAGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* * *
157983214 ATGACCGAAATATCCCTATACGATAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
** *
157983241 ATGATTGTAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* * * * *
157983268 ATGTCTGTAATACCCCTGTAAGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
157983295 ATGAC
1 ATGAC
157983300 TGATTTTCCC
Statistics
Matches: 231, Mismatches: 38, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
25 20 0.09
26 26 0.11
27 185 0.80
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.22
Consensus pattern (27 bp):
ATGACCGAAATACCCCTATAGGGTAAA
Found at i:157983193 original size:106 final size:107
Alignment explanation
Indices: 157983001--157983270 Score: 380
Period size: 106 Copynumber: 2.5 Consensus size: 107
157982991 TGGGCCATGT
* * * * **
157983001 ATGACTGAAATACCCCCATAGGGTAAAATGACCAAAATACCCCATAGGGTAAAATGACTGAAATA
1 ATGACCGAAATACCCCTATAAGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCAAAATA
*
157983066 CTCTTACAGGGTAAAATGACCGAAATACCCCTATAAGGTAAA
66 CTCTTACAAGGTAAAATGACCGAAATACCCCTATAAGGTAAA
*
157983108 ATGATCGAAATACCCCTATAAGGTAAAATGACCGAAATA-CCCATAGGGTAAAATGACCAAAATA
1 ATGACCGAAATACCCCTATAAGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCAAAATA
* *
157983172 CTCTTATAAGTTAAAATGACCGAAATACCCCTATAAGGTAAA
66 CTCTTACAAGGTAAAATGACCGAAATACCCCTATAAGGTAAA
* * * ** *
157983214 ATGACCGAAATATCCCTATACGATAAAATGATTGTAATACCCCTATAGGGTAAAATG
1 ATGACCGAAATACCCCTATAAGGTAAAATGACCGAAATACCCC-ATAGGGTAAAATG
157983271 TCTGTAATAC
Statistics
Matches: 144, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
106 94 0.65
107 37 0.26
108 13 0.09
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.22
Consensus pattern (107 bp):
ATGACCGAAATACCCCTATAAGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCAAAATA
CTCTTACAAGGTAAAATGACCGAAATACCCCTATAAGGTAAA
Found at i:157989594 original size:46 final size:47
Alignment explanation
Indices: 157989544--157989668 Score: 141
Period size: 46 Copynumber: 2.7 Consensus size: 47
157989534 GATGAACGCT
157989544 AGTGTAAGACATGTCCGGGACATGCATCGGCCT-CGAGA-CATAAGCC
1 AGTGTAAGACATGTCCGGGACATGCATCGGCCTACGAGATCAT-AGCC
** * *
157989590 AGTGTAAGACATGTTTGGGACATGCATCGG-CTACGAGATGATAGTC
1 AGTGTAAGACATGTCCGGGACATGCATCGGCCTACGAGATCATAGCC
*
157989636 AGTGTAAGACCATG-CCTGGGATATGGCATCGGC
1 AGTGTAAGA-CATGTCC-GGGACAT-GCATCGGC
157989669 ACCCTAACCC
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
45 2 0.03
46 45 0.68
47 12 0.18
48 7 0.11
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCCGGGACATGCATCGGCCTACGAGATCATAGCC
Found at i:157991677 original size:29 final size:28
Alignment explanation
Indices: 157991643--157991745 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
157991633 TACTCAATCA
*
157991643 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
157991672 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
157991701 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
157991730 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
157991746 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:157994591 original size:29 final size:28
Alignment explanation
Indices: 157994557--157994659 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
157994547 TACTCAATCA
*
157994557 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
157994586 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
157994615 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
157994644 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
157994660 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:158002935 original size:40 final size:40
Alignment explanation
Indices: 158002827--158003036 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
158002817 CGGGATTTAA
* * * * *
158002827 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
158002867 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
158002907 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
158002947 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
158002987 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
158003027 CCGGATATAT
1 CCGGATATAT
158003037 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:158011071 original size:40 final size:40
Alignment explanation
Indices: 158010963--158011172 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
158010953 CGGGATTTAA
* * * * *
158010963 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
158011003 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
158011043 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
158011083 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
158011123 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
158011163 CCGGATATAT
1 CCGGATATAT
158011173 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:158013100 original size:29 final size:29
Alignment explanation
Indices: 158013068--158013170 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
158013058 GTGACGAGAT
* *
158013068 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
158013097 TGGCACTAAGTGTACGAGCTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
158013126 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
158013155 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
158013171 CGGTCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:158018711 original size:29 final size:29
Alignment explanation
Indices: 158018679--158018781 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 29
158018669 GTGACGAGAT
* *
158018679 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* *
158018708 TGGCACTAAGTGTGCGAGCTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
158018737 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
158018766 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
158018782 CGGTCGAGTA
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 2 0.03
29 61 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:158022029 original size:13 final size:14
Alignment explanation
Indices: 158022011--158022039 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
158022001 AGTATTTAAT
158022011 AATAAAT-AAACAA
1 AATAAATAAAACAA
158022024 AATAAATAAAACAA
1 AATAAATAAAACAA
158022038 AA
1 AA
158022040 ATCACATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (14 bp):
AATAAATAAAACAA
Found at i:158025066 original size:28 final size:28
Alignment explanation
Indices: 158025028--158025134 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
158025018 GAATCATTCG
* *
158025028 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
158025056 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
158025084 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
158025112 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
158025135 ATTTGATTGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:158030851 original size:29 final size:29
Alignment explanation
Indices: 158030761--158030920 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
158030751 ACTCGATTTC
** * *
158030761 GCACACTTAGTGCCATGCGATTT-AAGCCT
1 GCACACTTAGTGCCAT-ATATTTCCAGCAT
* *** *
158030790 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
158030818 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
158030848 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
*
158030877 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCATATATTTCCAGCAT
158030906 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
158030921 ATCTCATCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 3 0.03
29 107 0.96
30 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:158039673 original size:68 final size:70
Alignment explanation
Indices: 158039601--158039798 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
158039591 ACACCCTGTA
* * * *
158039601 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
158039663 ATAAAT
65 ATAAAT
*
158039669 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
158039734 ATAAAT
65 ATAAAT
*
158039740 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
158039799 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:158039712 original size:41 final size:41
Alignment explanation
Indices: 158039667--158039784 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
158039657 TGAAAGATAA
158039667 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
158039708 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
158039738 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
158039779 ATGTAG
1 ATGTAG
158039785 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:158039724 original size:71 final size:71
Alignment explanation
Indices: 158039635--158039798 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
158039625 GAGATGTATC
158039635 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
158039700 AGGACA
66 AGGACA
158039706 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
158039771 AGGACA
66 AGGACA
158039777 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
158039799 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:158047239 original size:68 final size:70
Alignment explanation
Indices: 158047167--158047351 Score: 268
Period size: 71 Copynumber: 2.6 Consensus size: 70
158047157 ACACCCTGTA
* * * *
158047167 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
158047229 ATAAAT
65 ATAAAT
*
158047235 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
158047300 ATAAAT
65 ATAAAT
*
158047306 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGA
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGA
158047352 GACTACGAGA
Statistics
Matches: 108, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.22
69 3 0.03
70 1 0.01
71 80 0.74
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:158047278 original size:41 final size:41
Alignment explanation
Indices: 158047233--158047350 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
158047223 TGAAAGATAA
158047233 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
158047274 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
158047304 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
158047345 ATGTAG
1 ATGTAG
158047351 AGACTACGAG
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:158047290 original size:71 final size:71
Alignment explanation
Indices: 158047201--158047351 Score: 302
Period size: 71 Copynumber: 2.1 Consensus size: 71
158047191 GAGATGTATC
158047201 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
158047266 AGGACA
66 AGGACA
158047272 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
158047337 AGGACA
66 AGGACA
158047343 CCATGTAGA
1 CCATGTAGA
158047352 GACTACGAGA
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 80 1.00
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:158052923 original size:24 final size:24
Alignment explanation
Indices: 158052896--158053016 Score: 233
Period size: 24 Copynumber: 5.0 Consensus size: 24
158052886 GCTTATTATG
*
158052896 ATCGCACACATAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
158052920 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
158052944 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
158052968 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
158052992 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
158053016 A
1 A
158053017 CTTTCTACCC
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
24 96 1.00
ACGTcount: A:0.38, C:0.28, G:0.17, T:0.17
Consensus pattern (24 bp):
ATCGCACACACAGTGCCATAGTAA
Found at i:158055254 original size:12 final size:11
Alignment explanation
Indices: 158055235--158055264 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
158055225 GCATTGAAAT
158055235 TTTTATTCTTA
1 TTTTATTCTTA
158055246 TTCTTATTCTTA
1 TT-TTATTCTTA
158055258 TTTTATT
1 TTTTATT
158055265 TTACTTAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.73
Consensus pattern (11 bp):
TTTTATTCTTA
Found at i:158055683 original size:20 final size:19
Alignment explanation
Indices: 158055634--158055686 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
158055624 CACTTCATTG
158055634 CCTCTATTTGCACTTTGGT
1 CCTCTATTTGCACTTTGGT
*
158055653 CCTCTAATTGCACATTT-GT
1 CCTCTATTTGCAC-TTTGGT
*
158055672 CCCTCTGTTTGCACT
1 -CCTCTATTTGCACT
158055687 CCAATGACTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.13, C:0.30, G:0.13, T:0.43
Consensus pattern (19 bp):
CCTCTATTTGCACTTTGGT
Found at i:158069752 original size:27 final size:27
Alignment explanation
Indices: 158069714--158069767 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
158069704 TGCCATACTC
158069714 AAAATGTCGAGACTAACTATACCCAAA
1 AAAATGTCGAGACTAACTATACCCAAA
*
158069741 AAAATGTTGAGACTAACTATACCCAAA
1 AAAATGTCGAGACTAACTATACCCAAA
158069768 TGTCAAATTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.48, C:0.20, G:0.11, T:0.20
Consensus pattern (27 bp):
AAAATGTCGAGACTAACTATACCCAAA
Found at i:158069768 original size:23 final size:24
Alignment explanation
Indices: 158069708--158069771 Score: 76
Period size: 27 Copynumber: 2.6 Consensus size: 24
158069698 TACACATGCC
*
158069708 ATACTCAAAATGTCGAGACTAACT
1 ATACCCAAAATGTCGAGACTAACT
*
158069732 ATACCCAAAAAAATGTTGAGACTAACT
1 ATACCC---AAAATGTCGAGACTAACT
158069759 ATACCC-AAATGTC
1 ATACCCAAAATGTC
158069772 AAATTGATAG
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
23 6 0.18
24 5 0.15
27 23 0.68
ACGTcount: A:0.44, C:0.22, G:0.11, T:0.23
Consensus pattern (24 bp):
ATACCCAAAATGTCGAGACTAACT
Found at i:158072166 original size:14 final size:13
Alignment explanation
Indices: 158072146--158072177 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
158072136 AATATTTAAC
158072146 TTGTTCTTAATTA
1 TTGTTCTTAATTA
158072159 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
158072173 TTGTT
1 TTGTT
158072178 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:158078791 original size:13 final size:13
Alignment explanation
Indices: 158078773--158078797 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
158078763 ATCTATCCTA
158078773 TTTTATTTTATTT
1 TTTTATTTTATTT
158078786 TTTTATTTTATT
1 TTTTATTTTATT
158078798 AATTTTTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTATTTTATTT
Found at i:158081801 original size:29 final size:28
Alignment explanation
Indices: 158081740--158081911 Score: 227
Period size: 29 Copynumber: 6.0 Consensus size: 28
158081730 CATACATGCA
* * * * *
158081740 TATGGCCTACTAGGCCCAATCTCATTCA
1 TATGGCCCATTAGGCCAAATCACATTCG
*
158081768 CATGGCCCATTAGGTCCAAATCACATTCG
1 TATGGCCCATTAGG-CCAAATCACATTCG
*
158081797 TATGGCCCATTAGGCCTAAATCACAATCG
1 TATGGCCCATTAGGCC-AAATCACATTCG
*
158081826 TATGGCCCATTAGGCCCAAATCACATTCT
1 TATGGCCCATTAGG-CCAAATCACATTCG
158081855 TATGGCCCATTAGGCCCAAATCACATTCG
1 TATGGCCCATTAGG-CCAAATCACATTCG
158081884 TATGGCCCATTAGGCTCAAATCACATTC
1 TATGGCCCATTAGGC-CAAATCACATTC
158081912 ATAGTCATGC
Statistics
Matches: 129, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
28 14 0.11
29 113 0.88
30 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (28 bp):
TATGGCCCATTAGGCCAAATCACATTCG
Found at i:158081874 original size:87 final size:86
Alignment explanation
Indices: 158081740--158081908 Score: 259
Period size: 87 Copynumber: 2.0 Consensus size: 86
158081730 CATACATGCA
* * *
158081740 TATGGCCTACTAGGCCCAATCTCATTCACATGGCCCATTAGGTCCAAATCACATTCGTATGGCCC
1 TATGGCCCACTAGGCCCAATCACATTCACATGGCCCATTAGGCCCAAATCACATTCGTATGGCCC
158081805 ATTAGGC-CTAAATCACAATCG
66 ATTAGGCTC-AAATCACAATCG
* **
158081826 TATGGCCCATTAGGCCCAAATCACATTCTTATGGCCCATTAGGCCCAAATCACATTCGTATGGCC
1 TATGGCCCACTAGGCCC-AATCACATTCACATGGCCCATTAGGCCCAAATCACATTCGTATGGCC
158081891 CATTAGGCTCAAATCACA
65 CATTAGGCTCAAATCACA
158081909 TTCATAGTCA
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
86 15 0.20
87 59 0.79
88 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.25
Consensus pattern (86 bp):
TATGGCCCACTAGGCCCAATCACATTCACATGGCCCATTAGGCCCAAATCACATTCGTATGGCCC
ATTAGGCTCAAATCACAATCG
Found at i:158082156 original size:16 final size:16
Alignment explanation
Indices: 158082123--158082158 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
158082113 TATAGCCACA
*
158082123 ATTTTGGCTTTTTAGC
1 ATTTTGGCTTTTCAGC
*
158082139 ATTTTGGCTTTTCGGC
1 ATTTTGGCTTTTCAGC
158082155 ATTT
1 ATTT
158082159 CGGGATTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.11, C:0.14, G:0.19, T:0.56
Consensus pattern (16 bp):
ATTTTGGCTTTTCAGC
Found at i:158086614 original size:2 final size:2
Alignment explanation
Indices: 158086607--158086641 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
158086597 CATTTTAACT
158086607 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
158086642 CACAAATCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:158089343 original size:46 final size:46
Alignment explanation
Indices: 158089293--158089468 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
158089283 TATTTGGGCA
158089293 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
158089339 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
158089386 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*
158089432 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
158089469 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 4 0.04
45 3 0.03
46 66 0.59
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:158089448 original size:93 final size:93
Alignment explanation
Indices: 158089289--158089460 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
158089279 TGGATATTTG
*
158089289 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
158089354 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
158089382 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGA
158089446 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
158089461 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 1 0.01
93 75 0.99
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:158092363 original size:15 final size:15
Alignment explanation
Indices: 158092343--158092411 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
158092333 GTATCTTGGG
158092343 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
158092358 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
158092373 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
158092388 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
158092403 TTTCTTTAT
1 TTTCTTTAT
158092412 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:158092412 original size:30 final size:30
Alignment explanation
Indices: 158092334--158092421 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
158092324 CATAGTATCG
* * * *
158092334 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
158092364 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
158092394 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
158092422 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:158097292 original size:40 final size:40
Alignment explanation
Indices: 158097247--158097414 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
158097237 CGGAATATAA
158097247 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
158097287 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
158097327 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
158097367 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
158097407 CCGGATAT
1 CCGGATAT
158097415 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:158104505 original size:18 final size:18
Alignment explanation
Indices: 158104482--158104517 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
158104472 AACGACTTGC
158104482 ACAAATGCCTTCGGGTAT
1 ACAAATGCCTTCGGGTAT
158104500 ACAAATGCCTTCGGGTAT
1 ACAAATGCCTTCGGGTAT
158104518 TAGCCCGGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (18 bp):
ACAAATGCCTTCGGGTAT
Found at i:158104521 original size:58 final size:58
Alignment explanation
Indices: 158104446--158104555 Score: 175
Period size: 58 Copynumber: 1.9 Consensus size: 58
158104436 CACATGCACG
* *
158104446 ATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATGCCTTCGGGTATACAA
1 ATGCCTTCGGGTATTAGCCCGGATAGAACAACTTGCACAAATGCCTTCGGGTATACAA
** *
158104504 ATGCCTTCGGGTATTAGCCCGGATTTAACAACTTGCACGAATGCCTTCGGGT
1 ATGCCTTCGGGTATTAGCCCGGATAGAACAACTTGCACAAATGCCTTCGGGT
158104556 CTTAGCCCGG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
58 47 1.00
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (58 bp):
ATGCCTTCGGGTATTAGCCCGGATAGAACAACTTGCACAAATGCCTTCGGGTATACAA
Found at i:158104561 original size:40 final size:38
Alignment explanation
Indices: 158104503--158104649 Score: 150
Period size: 40 Copynumber: 3.7 Consensus size: 38
158104493 CGGGTATACA
* * *
158104503 AATGCCTTCGGGTATTAGCCCGGATTTAACAACTTGCAC
1 AATGCCTTCGGGTCTTAGCCCGGATATAAC-ACTAGCAC
* *
158104542 GAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTAGCAC
1 -AATGCCTTCGGGTCTTAGCCCGGATATA-ACACTAGCAC
* * *
158104582 AATTGCCTTCGGGTCTTAACCCGGATATAATTACTAGCATA
1 AA-TGCCTTCGGGTCTTAGCCCGGATATAA-CACTAGCA-C
* *
158104623 AATGTCTTCGGGACTTAGCCCGGATAT
1 AATGCCTTCGGGTCTTAGCCCGGATAT
158104650 CATTCAATTG
Statistics
Matches: 91, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (38 bp):
AATGCCTTCGGGTCTTAGCCCGGATATAACACTAGCAC
Found at i:158104640 original size:80 final size:80
Alignment explanation
Indices: 158104500--158104647 Score: 197
Period size: 80 Copynumber: 1.9 Consensus size: 80
158104490 CTTCGGGTAT
* * * * *
158104500 ACAAATGCCTTCGGGTATTAGCCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCG
1 ACAAATGCCTTCGGGTATTAACCCGGATATAACAACTAGCACAAATGCCTTCGGGACTTAGCCCG
158104565 GATGTAGTCACTAGC
66 GATGTAGTCACTAGC
* * ** * *
158104580 ACAATTGCCTTCGGGTCTTAACCCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCG
1 ACAAATGCCTTCGGGTATTAACCCGGATATAACAACTAGCACAAATGCCTTCGGGACTTAGCCCG
158104645 GAT
66 GAT
158104648 ATCATTCAAT
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
80 57 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (80 bp):
ACAAATGCCTTCGGGTATTAACCCGGATATAACAACTAGCACAAATGCCTTCGGGACTTAGCCCG
GATGTAGTCACTAGC
Found at i:158109410 original size:40 final size:40
Alignment explanation
Indices: 158109378--158109609 Score: 322
Period size: 40 Copynumber: 5.8 Consensus size: 40
158109368 CCAGCATGAT
* * * * *
158109378 TGCTCTTCAGGACCTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
158109418 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
158109458 TGCTCTTCGGGACTTAGTCCGGATACT-TCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATA-TATCACTAGCACGAA
* *
158109498 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
158109538 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
158109578 TGCTCTTCGGGACTTAGCCCGGGTATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
158109610 CTCAATGAAC
Statistics
Matches: 174, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
40 173 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:158110937 original size:37 final size:37
Alignment explanation
Indices: 158110794--158110939 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
158110784 AGCTCAGACG
* * *
158110794 AAATCTCCACACGAAGTTATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
158110831 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAAAA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
158110868 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
158110905 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
158110940 ATATATTTCC
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:158111211 original size:48 final size:48
Alignment explanation
Indices: 158111085--158111269 Score: 307
Period size: 48 Copynumber: 3.8 Consensus size: 48
158111075 GCACATCGCC
*
158111085 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * * *
158111135 TATATATTTCACATTAACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
158111183 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
158111231 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
158111270 TGCATGTTCA
Statistics
Matches: 126, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
48 84 0.67
50 42 0.33
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:158111274 original size:98 final size:97
Alignment explanation
Indices: 158111085--158111268 Score: 316
Period size: 98 Copynumber: 1.9 Consensus size: 97
158111075 GCACATCGCC
*
158111085 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
158111150 AACCATTCAGCTTTACCACATATGCATATCTCA
65 AACCATTCAGCTTTACCACATATGCATATCTCA
*
158111183 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACATTA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTA
* *
158111247 GCCATTCGGCTTTACCACATAT
66 ACCATTCAGCTTTACCACATAT
158111269 ATGCATGTTC
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
96 36 0.44
98 46 0.56
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTA
ACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:158111318 original size:47 final size:47
Alignment explanation
Indices: 158111239--158111432 Score: 246
Period size: 47 Copynumber: 4.1 Consensus size: 47
158111229 CATACATATT
* * * *
158111239 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCATATTCA
* * *
158111286 CCACATTGGCCATTTGGCCTTATCACACATATGCATGCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCATATTCA
*
158111333 TCACATTGGCCATTCGGCCTTATCAC-CTATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACAC-ATATGCATGTTCATATTCA
* * * ** *
158111380 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCATATTCA
158111427 TCACAT
1 TCACAT
158111433 AAAATCCTAA
Statistics
Matches: 129, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
46 1 0.01
47 128 0.99
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCATATTCA
Found at i:158111426 original size:94 final size:94
Alignment explanation
Indices: 158111192--158111432 Score: 263
Period size: 94 Copynumber: 2.6 Consensus size: 94
158111182 ATACATATTT
* * * *
158111192 CACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATACACA-CTC--ACAT-TCATCACATTAGCCATTC
* *
158111254 GGCTTTACCACATATATGCATGTTCATATTCAC
62 GGCCTTACCACATATATGCATGTTCACATTCAC
* * ** * *
158111287 CACATTGGCCATTTGGCCTTATCACACATATGCATGCTCATATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
* * *
158111352 TTATCACCTATATGCATGTTCACATTCAT
66 TTACCACATATATGCATGTTCACATTCAC
* * *
158111381 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACAT
158111433 AAAATCCTAA
Statistics
Matches: 122, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
93 1 0.01
94 89 0.73
95 18 0.15
96 4 0.03
97 10 0.08
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
TTACCACATATATGCATGTTCACATTCAC
Found at i:158116103 original size:8 final size:8
Alignment explanation
Indices: 158116090--158116119 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
158116080 TCGGCAAAAC
158116090 CCGAAATG
1 CCGAAATG
158116098 CCGAAATG
1 CCGAAATG
*
158116106 CCAAAATG
1 CCGAAATG
158116114 CCGAAA
1 CCGAAA
158116120 AGCTGAAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.20, T:0.10
Consensus pattern (8 bp):
CCGAAATG
Found at i:158116393 original size:29 final size:28
Alignment explanation
Indices: 158116338--158116451 Score: 122
Period size: 29 Copynumber: 4.0 Consensus size: 28
158116328 GTAAGCATGA
* * *
158116338 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
158116366 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
158116395 ATATACAGGTGATTTGGGCCTAAT-GGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * *
158116423 ATATGAATATGATTGGGCTTAATAGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
158116451 A
1 A
158116452 GATATAGGTA
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
27 10 0.14
28 28 0.38
29 36 0.49
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:158122017 original size:15 final size:15
Alignment explanation
Indices: 158121986--158122019 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
158121976 TAAATTTTAA
* *
158121986 TATTTTTATTGATAT
1 TATTTTTATTAACAT
158122001 TATTTTTATTAACAT
1 TATTTTTATTAACAT
158122016 TATT
1 TATT
158122020 ATATTTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (15 bp):
TATTTTTATTAACAT
Found at i:158132247 original size:40 final size:39
Alignment explanation
Indices: 158132202--158132331 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
158132192 CGGAATATAA
158132202 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
158132242 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
158132282 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
158132322 CCGGATATAA
1 CCGGATATAA
158132332 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:158132346 original size:40 final size:40
Alignment explanation
Indices: 158132218--158132369 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
158132208 ATAACCATGT
* * *
158132218 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
158132258 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
158132298 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
158132338 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
158132370 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:158132352 original size:80 final size:80
Alignment explanation
Indices: 158132218--158132367 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
158132208 ATAACCATGT
*
158132218 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
158132282 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
158132298 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
158132361 CCCGGAT
64 CCCGGAT
158132368 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:158140179 original size:40 final size:39
Alignment explanation
Indices: 158140134--158140263 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
158140124 CGGAATATAA
158140134 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
158140174 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
158140214 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
158140254 CCGGATATAA
1 CCGGATATAA
158140264 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:158140278 original size:40 final size:40
Alignment explanation
Indices: 158140150--158140301 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
158140140 ATAACCATGT
* * *
158140150 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
158140190 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
158140230 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
158140270 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
158140302 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:158140284 original size:80 final size:80
Alignment explanation
Indices: 158140150--158140299 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
158140140 ATAACCATGT
*
158140150 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
158140214 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
158140230 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
158140293 CCCGGAT
64 CCCGGAT
158140300 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:158147951 original size:27 final size:26
Alignment explanation
Indices: 158147903--158147962 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
158147893 GCGAGGCTGC
*
158147903 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
158147930 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
158147956 CAGATAT
1 CAGATAT
158147963 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:158155763 original size:40 final size:40
Alignment explanation
Indices: 158155704--158155845 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
158155694 AAATTGAATG
* * *
158155704 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
158155744 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
158155784 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
158155824 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
158155846 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:158155869 original size:40 final size:39
Alignment explanation
Indices: 158155742--158155871 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
158155732 ATGCTGGAAA
* * *
158155742 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC
* *
158155783 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C
*
158155821 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC
158155862 TTATATCCGG
1 TTATATCCGG
158155872 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC
Found at i:158178600 original size:40 final size:40
Alignment explanation
Indices: 158178555--158178684 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
158178545 CGGAATACAA
158178555 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
158178595 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
158178635 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
158178675 CCGGATATAA
1 CCGGATATAA
158178685 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:158186657 original size:40 final size:40
Alignment explanation
Indices: 158186612--158186740 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
158186602 CGGAATACAA
158186612 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
158186652 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAG-
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
158186691 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
158186731 CCGGATATAA
1 CCGGATATAA
158186741 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 10, Indels: 6
0.83 0.11 0.07
Matches are distributed among these distances:
38 2 0.03
39 31 0.41
40 43 0.57
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:158190865 original size:41 final size:40
Alignment explanation
Indices: 158190820--158190996 Score: 135
Period size: 41 Copynumber: 4.3 Consensus size: 40
158190810 GCGCAAACAT
* *
158190820 CCTTCGAAATCAAGCCCGATTCTTAGCACTGGCTCAAAAGC
1 CCTTCGAAA-CAAGCCCGATTATGAGCACTGGCTCAAAAGC
* * * * *
158190861 CCTTCGAGACCAAGCTCGGATTA-GACCACTGGCTCGAAGGC
1 CCTTCGA-AACAAGC-CCGATTATGAGCACTGGCTCAAAAGC
* * * *
158190902 CCTTCGGAACTAAG-TCGGTTATGA-CACTGGCTCTAAAGC
1 CCTTCGAAAC-AAGCCCGATTATGAGCACTGGCTCAAAAGC
** * * *
158190941 CCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTCAAAGGC
1 CCTTCGAAAC-AAGCCCGATTATGAGCACTGGCTCAAAAGC
158190982 CCTTCGAAACCAAGC
1 CCTTCGAAA-CAAGC
158190997 TCGGATTTAA
Statistics
Matches: 110, Mismatches: 19, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
39 30 0.27
40 13 0.12
41 60 0.55
42 7 0.06
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.22
Consensus pattern (40 bp):
CCTTCGAAACAAGCCCGATTATGAGCACTGGCTCAAAAGC
Found at i:158190943 original size:39 final size:40
Alignment explanation
Indices: 158190846--158191000 Score: 156
Period size: 41 Copynumber: 3.8 Consensus size: 40
158190836 CGATTCTTAG
*
158190846 CACTGGCTCAAAAGCCCTTC-GAGACCAAGCTCGGATTA-GAC
1 CACTGGCTC-AAAGCCCTTCGGA-ACTAAGCTCGG-TTATGAC
*
158190887 CACTGGCTCGAAGGCCCTTCGGAACTAAG-TCGGTTATGA-
1 CACTGGCTC-AAAGCCCTTCGGAACTAAGCTCGGTTATGAC
* * * *
158190926 CACTGGCTCTAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
1 CACTGGCTC-AAAGCCCTTCGGAACTAAGCTCGGTTATGAC
* *
158190967 CACTGGCTCAAAGGCCCTTCGAAACCAAGCTCGG
1 CACTGGCTCAAA-GCCCTTCGGAACTAAGCTCGG
158191001 ATTTAAACCC
Statistics
Matches: 100, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
39 29 0.29
40 18 0.18
41 51 0.51
42 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.21
Consensus pattern (40 bp):
CACTGGCTCAAAGCCCTTCGGAACTAAGCTCGGTTATGAC
Found at i:158200702 original size:46 final size:46
Alignment explanation
Indices: 158200652--158200824 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
158200642 TGGTTGAGCA
*
158200652 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
158200698 TCCGAACTCGTTTAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
158200745 TCTGAACTCGTTGAGTTGAGTCCAAGTTCATTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
158200791 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
158200825 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 58 0.57
47 26 0.25
48 3 0.03
50 6 0.06
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:158200808 original size:93 final size:93
Alignment explanation
Indices: 158200649--158200819 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
158200639 GGATGGTTGA
* * * *
158200649 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTTAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
158200714 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
158200742 GCATCTGAACTCGTTGAGTTGAGTCCAAGTTCATTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
158200807 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
158200820 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:158201085 original size:19 final size:20
Alignment explanation
Indices: 158201048--158201085 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
158201038 ATAAGGTGGT
158201048 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
158201068 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
158201086 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:158202199 original size:40 final size:41
Alignment explanation
Indices: 158202144--158202227 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 41
158202134 GTTACATCGG
* *
158202144 AACTAAGTTCGGTTATGA-CACTGGCTTTAAA-GCCCTTCGA
1 AACTAAGTTCAGTTATGAGCACTGGC-TCAAAGGCCCTTCGA
*
158202184 AACTAAGTTCAGTTATTAGCACTGGCTCAAAGGCCCTTCGA
1 AACTAAGTTCAGTTATGAGCACTGGCTCAAAGGCCCTTCGA
158202225 AAC
1 AAC
158202228 CAAGCTCGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
40 20 0.51
41 19 0.49
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (41 bp):
AACTAAGTTCAGTTATGAGCACTGGCTCAAAGGCCCTTCGA
Found at i:158208644 original size:46 final size:46
Alignment explanation
Indices: 158208577--158208754 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
158208567 TGTAACCCGC
* * *
158208577 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTCCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTCCGCAT
*
158208623 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-CCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTCC--GCAT
* *** ** *
158208669 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGATGTCCGCAT
158208716 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
158208755 CTCAACCATC
Statistics
Matches: 109, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
45 2 0.02
46 71 0.65
47 35 0.32
48 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTCCGCAT
Found at i:158208696 original size:93 final size:93
Alignment explanation
Indices: 158208584--158208755 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
158208574 CGCCCATAAG
***
158208584 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTCCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCA
158208649 ACGAGTTCGGATGCCTAGTTACATCTCT
66 ACGAGTTCGGATGCCTAGTTACATCTCT
* *
158208677 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCA
158208742 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
158208756 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCT
Found at i:158212903 original size:41 final size:40
Alignment explanation
Indices: 158212858--158213015 Score: 160
Period size: 41 Copynumber: 3.9 Consensus size: 40
158212848 GATTCTTAGT
*
158212858 ACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACC
1 ACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATTAGA-C
* * * *
158212899 ACTGGCTCGAAGGCCCTTCGGAACTAAG-TCCGG-TTATGAC
1 ACTGGCTCAAAAGCCCTTCGAAACCAAGCT-CGGATTA-GAC
* * *
158212939 ACTGGCTCTAAAGCCCTTCGAAACTAAGTTCGGTTATTAG-C
1 ACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGG--ATTAGAC
* *
158212980 ACTGGCTCAAAGGCCCTTTGAAACCAAGCTCGGATT
1 ACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATT
158213016 TAAACCCTGA
Statistics
Matches: 98, Mismatches: 13, Indels: 14
0.78 0.10 0.11
Matches are distributed among these distances:
39 3 0.03
40 33 0.34
41 58 0.59
42 1 0.01
43 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATTAGAC
Found at i:158220612 original size:23 final size:24
Alignment explanation
Indices: 158220565--158220846 Score: 461
Period size: 23 Copynumber: 12.0 Consensus size: 24
158220555 GCTTTATCAT
*
158220565 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
158220590 ACAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
158220613 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
158220636 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
158220659 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
158220683 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
158220707 ATAACTGGGGCATAAG-CCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
158220730 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
158220753 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
158220777 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
158220801 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
158220824 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
158220847 GCACTTCCTC
Statistics
Matches: 246, Mismatches: 5, Indels: 13
0.93 0.02 0.05
Matches are distributed among these distances:
23 131 0.53
24 108 0.44
25 7 0.03
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:158220847 original size:47 final size:48
Alignment explanation
Indices: 158220565--158220846 Score: 461
Period size: 47 Copynumber: 6.0 Consensus size: 48
158220555 GCTTTATCAT
* *
158220565 ATAACTGGAGGCCT-AGCCTCTTTTAACAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
158220613 ATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
158220659 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
158220707 ATAACTGGGGCATAAG-CCTTTTAATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
* *
158220753 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
158220801 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
158220847 GCACTTCCTC
Statistics
Matches: 223, Mismatches: 5, Indels: 13
0.93 0.02 0.05
Matches are distributed among these distances:
46 53 0.24
47 120 0.54
48 50 0.22
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:158220918 original size:9 final size:9
Alignment explanation
Indices: 158220904--158220960 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
158220894 ATCTCATGTG
158220904 CATATCATA
1 CATATCATA
*
158220913 CATATCATGTG
1 CATATCA--TA
158220924 CATATCATA
1 CATATCATA
*
158220933 CATATCATGTG
1 CATATCA--TA
158220944 CATATCATA
1 CATATCATA
158220953 CATATCAT
1 CATATCAT
158220961 GTTTATCAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 24 0.60
11 16 0.40
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:158220920 original size:20 final size:20
Alignment explanation
Indices: 158220892--158220962 Score: 133
Period size: 20 Copynumber: 3.5 Consensus size: 20
158220882 GCATTTATGA
*
158220892 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
158220912 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
158220932 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
158220952 ACATATCATGT
1 ACATATCATGT
158220963 TTATCAAAAT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 50 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:158220927 original size:11 final size:11
Alignment explanation
Indices: 158220897--158220951 Score: 64
Period size: 11 Copynumber: 5.4 Consensus size: 11
158220887 TATGAACATC
158220897 TCATGTGCATA
1 TCATGTGCATA
*
158220908 TCA--TACATA
1 TCATGTGCATA
158220917 TCATGTGCATA
1 TCATGTGCATA
*
158220928 TCA--TACATA
1 TCATGTGCATA
158220937 TCATGTGCATA
1 TCATGTGCATA
158220948 TCAT
1 TCAT
158220952 ACATATCATG
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 16 0.44
11 20 0.56
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:158222242 original size:27 final size:26
Alignment explanation
Indices: 158222207--158222284 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
158222197 AGGCATATTC
158222207 GTCATTTTACCATAAAGGGGTATTACG
1 GTCATTTTACC-TAAAGGGGTATTACG
* *
158222234 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTAAAGGGG-TATTACG
*
158222261 GTCTTTTTACCTAATAGGGGTATT
1 GTCATTTTACCTAA-AGGGGTATT
158222285 TTAGTCATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
26 5 0.12
27 34 0.81
28 3 0.07
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (26 bp):
GTCATTTTACCTAAAGGGGTATTACG
Found at i:158222361 original size:27 final size:27
Alignment explanation
Indices: 158222340--158222680 Score: 416
Period size: 27 Copynumber: 12.6 Consensus size: 27
158222330 AAGGGTATTT
*
158222340 CAGTAATTTTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* *
158222367 CAGTAATTCTGTAAATCAAGGGTGAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
*
158222394 CAGTAATTCTATAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
** *
158222421 TGGCAATTCTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
*
158222448 CGGTAATTCTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* *
158222475 C-GATAATTATGTAAATCGGGGGTAAAA
1 CAG-TAATTCTGTAAATCGAGGGTAAAA
* * *
158222502 CAGTAATTATGTAAATTGGGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
*
158222529 CGGTAATTCTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* *
158222556 TAGTAATTCTGTAAA-CTAAGGGTAAAA
1 CAGTAATTCTGTAAATC-GAGGGTAAAA
*
158222583 CGGTAATTCTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* * **
158222610 CGGTAATTTTACAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* * * *
158222637 CAATAATTCTATAACTTGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
*
158222664 CGGTAATTCTGTAAATC
1 CAGTAATTCTGTAAATC
158222681 AGGAGTACTT
Statistics
Matches: 271, Mismatches: 39, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
26 2 0.01
27 267 0.99
28 2 0.01
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.28
Consensus pattern (27 bp):
CAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:158226382 original size:40 final size:40
Alignment explanation
Indices: 158226323--158226491 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
158226313 CGGGACTTTA
* * *
158226323 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
158226363 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
158226403 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
158226443 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
158226483 CCCGGATAT
1 CCCGGATAT
158226492 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:158234416 original size:40 final size:40
Alignment explanation
Indices: 158234357--158234525 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
158234347 CGGGACTTTA
* * *
158234357 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
158234397 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
158234437 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
158234477 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
158234517 CCCGGATAT
1 CCCGGATAT
158234526 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:158241292 original size:40 final size:40
Alignment explanation
Indices: 158241244--158241428 Score: 255
Period size: 40 Copynumber: 4.6 Consensus size: 40
158241234 CTTGCACAAG
*
158241244 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
158241284 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
158241324 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
158241364 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
158241405 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
158241429 CATTCGAATA
Statistics
Matches: 125, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 95 0.76
41 29 0.23
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:158246200 original size:42 final size:41
Alignment explanation
Indices: 158246044--158246201 Score: 106
Period size: 42 Copynumber: 3.7 Consensus size: 41
158246034 TATGAGTTGT
* *
158246044 CATGTAAGACCATGTCTAGGATGTTGGCGTCGATTTGAGATTTA
1 CATGTAAGACCATGTCTGGGATGTTGGCATCGATTT--GA-TTA
* * * ** * *
158246088 CGTGTAAGAGCATGTTTGGGACATAGGCATC-ATTT-TTTA
1 CATGTAAGACCATGTCTGGGATGTTGGCATCGATTTGATTA
* * * *
158246127 TGCCGTGTAAGACCCTATCTGGGACAG-TGGCATCGATATTGATTA
1 ---CATGTAAGACCATGTCTGGGA-TGTTGGCATCGAT-TTGATTA
158246172 CATGTAAGACCATGTCTGGGATGTTGGCAT
1 CATGTAAGACCATGTCTGGGATGTTGGCAT
158246202 TGTACGAGCT
Statistics
Matches: 85, Mismatches: 21, Indels: 18
0.69 0.17 0.15
Matches are distributed among these distances:
39 3 0.04
41 1 0.01
42 47 0.55
43 6 0.07
44 25 0.29
45 3 0.04
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (41 bp):
CATGTAAGACCATGTCTGGGATGTTGGCATCGATTTGATTA
Found at i:158247504 original size:17 final size:17
Alignment explanation
Indices: 158247463--158247506 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
158247453 TTGATTACTT
158247463 TGTGAGTCACAC-GGCC
1 TGTGAGTCACACGGGCC
*
158247479 TGT---TCACACGGGCG
1 TGTGAGTCACACGGGCC
158247493 TGTGAGTCACACGG
1 TGTGAGTCACACGG
158247507 TTGTGATTGC
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
13 6 0.26
14 6 0.26
16 3 0.13
17 8 0.35
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.20
Consensus pattern (17 bp):
TGTGAGTCACACGGGCC
Found at i:158249384 original size:11 final size:11
Alignment explanation
Indices: 158249368--158249398 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
158249358 ACCTTGTCGC
158249368 AATGTCATACT
1 AATGTCATACT
158249379 AATGTCATACT
1 AATGTCATACT
158249390 AATGTCATA
1 AATGTCATA
158249399 GCAACATCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (11 bp):
AATGTCATACT
Found at i:158253428 original size:40 final size:40
Alignment explanation
Indices: 158253382--158253565 Score: 253
Period size: 40 Copynumber: 4.6 Consensus size: 40
158253372 CTCGCACAAG
* *
158253382 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
158253422 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCGCAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
158253462 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
158253502 GCCTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
158253542 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
158253566 CATTCGAATA
Statistics
Matches: 125, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 123 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:158270796 original size:40 final size:40
Alignment explanation
Indices: 158270737--158270944 Score: 227
Period size: 40 Copynumber: 5.2 Consensus size: 40
158270727 CAATTGAATG
* * * *
158270737 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
158270777 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
158270817 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
158270857 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
158270897 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
158270937 ATATCCGG
1 ATATCCGG
158270945 TTGTATTCCG
Statistics
Matches: 144, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 144 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:158270875 original size:80 final size:80
Alignment explanation
Indices: 158270739--158270944 Score: 252
Period size: 80 Copynumber: 2.6 Consensus size: 80
158270729 ATTGAATGAT
* * ** * * *
158270739 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
158270804 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
158270819 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* *
158270884 TGTGCAAGTCGTTAT
66 TGTGCAAGTCGCTAC
* *
158270899 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
158270945 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 107 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:158278803 original size:40 final size:40
Alignment explanation
Indices: 158278744--158278951 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
158278734 CAATTGAATG
* * * *
158278744 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
158278784 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
158278824 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
158278864 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
158278904 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
158278944 ATATCCGG
1 ATATCCGG
158278952 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:158278882 original size:80 final size:80
Alignment explanation
Indices: 158278745--158278951 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
158278735 AATTGAATGA
* * ** * * *
158278745 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
158278810 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
158278823 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
158278888 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
158278905 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
158278952 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:158280987 original size:29 final size:28
Alignment explanation
Indices: 158280955--158281056 Score: 91
Period size: 29 Copynumber: 3.5 Consensus size: 28
158280945 GTGACGAGAT
* *
158280955 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACT-AGTGTGCGAGCTTGGAATATA
* *
158280984 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACT-AGTGTGCGAGCTTGGAATATA
* *
158281013 TGGCACTATGTGTGCGGGCTT-GAATCACA
1 TGGCACTA-GTGTGCGAGCTTGGAAT-ATA
158281042 T-GCACTAAGTGTGCG
1 TGGCACT-AGTGTGCG
158281057 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
28 16 0.26
29 45 0.74
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (28 bp):
TGGCACTAGTGTGCGAGCTTGGAATATA
Found at i:158291354 original size:29 final size:29
Alignment explanation
Indices: 158291320--158291509 Score: 238
Period size: 29 Copynumber: 6.6 Consensus size: 29
158291310 TACTCGATTT
** * *
158291320 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
158291349 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
158291378 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
158291407 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
158291436 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
158291465 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
158291494 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
158291510 ATCTCGTCAC
Statistics
Matches: 143, Mismatches: 17, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
28 2 0.01
29 141 0.99
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:158293331 original size:46 final size:46
Alignment explanation
Indices: 158293102--158293331 Score: 361
Period size: 46 Copynumber: 5.0 Consensus size: 46
158293092 TTTCTGTCAT
** * * *
158293102 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
* ** *
158293148 GTTGCCATGGCATCTTTCAACCATGGTCTTATTCATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
*
158293194 GTTGCCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
158293240 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
*
158293286 GTTGACATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
158293332 AGAGCACACT
Statistics
Matches: 174, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 174 1.00
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
Found at i:158298553 original size:15 final size:15
Alignment explanation
Indices: 158298535--158298572 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
158298525 CATAACAGAA
*
158298535 AAATCC-ACAATATAG
1 AAATCCAAC-ATAAAG
158298550 AAATCCAACATAAAG
1 AAATCCAACATAAAG
158298565 AAATCCAA
1 AAATCCAA
158298573 AAGAAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 19 0.90
16 2 0.10
ACGTcount: A:0.58, C:0.21, G:0.05, T:0.16
Consensus pattern (15 bp):
AAATCCAACATAAAG
Found at i:158299152 original size:22 final size:22
Alignment explanation
Indices: 158299125--158299176 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
158299115 TAATCTTTAA
158299125 ATCATCTTGATATCTTTCTAGT
1 ATCATCTTGATATCTTTCTAGT
*
158299147 ATCATCCTGATATCTTTCTAGT
1 ATCATCTTGATATCTTTCTAGT
158299169 -TCTATCTT
1 ATC-ATCTT
158299177 TACTTATCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 2 0.07
22 25 0.93
ACGTcount: A:0.21, C:0.21, G:0.08, T:0.50
Consensus pattern (22 bp):
ATCATCTTGATATCTTTCTAGT
Found at i:158307526 original size:30 final size:30
Alignment explanation
Indices: 158307490--158307551 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
158307480 ATCAAAGCAG
158307490 TAACATCAGTATCAAGTAGAAAAAATGTAC
1 TAACATCAGTATCAAGTAGAAAAAATGTAC
*
158307520 TAACATCAGTATCAAGTAGAAAGAATGTAC
1 TAACATCAGTATCAAGTAGAAAAAATGTAC
158307550 TA
1 TA
158307552 GTAACGACGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.48, C:0.13, G:0.15, T:0.24
Consensus pattern (30 bp):
TAACATCAGTATCAAGTAGAAAAAATGTAC
Found at i:158309611 original size:29 final size:29
Alignment explanation
Indices: 158309576--158309649 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
158309566 GTTGTGAGAT
* *
158309576 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
158309605 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
158309634 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
158309650 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:158313897 original size:29 final size:29
Alignment explanation
Indices: 158313806--158313966 Score: 171
Period size: 29 Copynumber: 5.6 Consensus size: 29
158313796 TACTCGATTT
** * *
158313806 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
158313835 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
** *
158313864 CGCACACCCAGTGCCGTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
158313893 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
158313922 CGCACACTTAGTTCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
158313951 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
158313967 ATCTCGTCAC
Statistics
Matches: 109, Mismatches: 22, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
28 2 0.02
29 107 0.98
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:158317318 original size:29 final size:29
Alignment explanation
Indices: 158317285--158317387 Score: 161
Period size: 29 Copynumber: 3.6 Consensus size: 29
158317275 CCTTCGAGCT
** * *
158317285 CGCACACCCAGTGCCGTATATTTCTAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
158317314 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
158317343 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
158317372 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
158317388 ATCTCGTCAC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 68 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:158317318 original size:58 final size:58
Alignment explanation
Indices: 158317256--158317387 Score: 165
Period size: 58 Copynumber: 2.3 Consensus size: 58
158317246 AATTTAAGCC
* * * * * *
158317256 TGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATATTTCTAGCA
1 TGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * **
158317314 TGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 TGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
*
158317372 CGCACACTTAGTGCCA
1 TGCACACTTAGTGCCA
158317388 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
58 63 1.00
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
TGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
Found at i:158324434 original size:29 final size:29
Alignment explanation
Indices: 158324399--158324472 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
158324389 GTTGTGAGAT
* *
158324399 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
158324428 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
158324457 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
158324473 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:158334881 original size:40 final size:40
Alignment explanation
Indices: 158334832--158335039 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
158334822 TCTTCGGAAT
* * *
158334832 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
158334871 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
158334911 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
158334951 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
158334991 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
158335031 TTAGCCCGG
1 TTAGCCCGG
158335040 GTATCATTCA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 3 0.02
40 142 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:158338558 original size:55 final size:55
Alignment explanation
Indices: 158338453--158338558 Score: 124
Period size: 55 Copynumber: 1.9 Consensus size: 55
158338443 CTACATTTTG
* * * * * *
158338453 AAGTTAGTTTCGAGCACGGCCTAGACACATGGGCGTGTGGTCGGCCGTGTGACCC
1 AAGTCAGTTTCGACCACGGCCAAGACACACGGGCATGTGCTCGGCCGTGTGACCC
* *
158338508 AAGTCAGTTTCGACCACGGCCAAGGCACACGGGCATGT-CTCCGGCTGTGTG
1 AAGTCAGTTTCGACCACGGCCAAGACACACGGGCATGTGCT-CGGCCGTGTG
158338559 GAACAAGTCA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
54 1 0.02
55 41 0.98
ACGTcount: A:0.19, C:0.27, G:0.33, T:0.21
Consensus pattern (55 bp):
AAGTCAGTTTCGACCACGGCCAAGACACACGGGCATGTGCTCGGCCGTGTGACCC
Found at i:158340560 original size:40 final size:40
Alignment explanation
Indices: 158340499--158340720 Score: 288
Period size: 40 Copynumber: 5.6 Consensus size: 40
158340489 TATTCGGATG
* * *
158340499 ATAACGGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** *
158340539 A-ATTTCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
158340579 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
158340619 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
158340659 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
158340699 ATATCC-GGCTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
158340721 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 18 0.11
40 144 0.88
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:158340638 original size:80 final size:79
Alignment explanation
Indices: 158340499--158340720 Score: 320
Period size: 80 Copynumber: 2.8 Consensus size: 79
158340489 TATTCGGATG
* * * * * *
158340499 ATAACGGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTTCGGGCTAAGCCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGCTAAGTCCCGAAGGCA
158340564 TTTGTGCGAGTTACT
65 TTTGTGCGAGTTACT
* *
158340579 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG-GCTAAGTCCCGAAGGCA
158340644 TTTGTGCGAGTTACT
65 TTTGTGCGAGTTACT
* *
158340659 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCCGGCTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGCTAAGTCCCGAAGG
158340721 TACTTGGTTT
Statistics
Matches: 129, Mismatches: 11, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
79 21 0.16
80 108 0.84
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:158344817 original size:23 final size:23
Alignment explanation
Indices: 158344774--158344817 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
158344764 AGTTATCCCT
*
158344774 ATAAACTCATGTCTGTGGGCCCC
1 ATAAACTCATGTCTATGGGCCCC
*
158344797 ATAAACTCATGTCTATTGGCC
1 ATAAACTCATGTCTATGGGCC
158344818 TCAACATAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (23 bp):
ATAAACTCATGTCTATGGGCCCC
Found at i:158346343 original size:22 final size:22
Alignment explanation
Indices: 158346288--158346377 Score: 67
Period size: 22 Copynumber: 4.0 Consensus size: 22
158346278 CAAAGTTTCT
* *
158346288 TATCATATATCATATCAGAGTCA
1 TATCATATAACATATCAAAG-CA
*
158346311 TAAT-ATGTAACATATCAAAGCA
1 T-ATCATATAACATATCAAAGCA
*
158346333 TATCATATAACTTATCAGAA-CA
1 TATCATATAACATATCA-AAGCA
* * * *
158346355 TAACACATAACATAGCAGAGCA
1 TATCATATAACATATCAAAGCA
158346377 T
1 T
158346378 GTCCTACCCC
Statistics
Matches: 53, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
21 3 0.06
22 32 0.60
23 16 0.30
24 2 0.04
ACGTcount: A:0.46, C:0.18, G:0.09, T:0.28
Consensus pattern (22 bp):
TATCATATAACATATCAAAGCA
Found at i:158346977 original size:41 final size:41
Alignment explanation
Indices: 158346911--158346989 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
158346901 CTGTGTATCA
*** *
158346911 CACATGGTCTAGCACACGGTGTACCACATGGCCCTGTGGTG
1 CACATGGTCTAGCACACGACCTACCACAAGGCCCTGTGGTG
* *
158346952 CACATGGTCTATCACACGACCTACCACAAGGCCGTGTG
1 CACATGGTCTAGCACACGACCTACCACAAGGCCCTGTG
158346990 ACGCTGGGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.20
Consensus pattern (41 bp):
CACATGGTCTAGCACACGACCTACCACAAGGCCCTGTGGTG
Found at i:158349139 original size:30 final size:29
Alignment explanation
Indices: 158349045--158349146 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
158349035 TATAGTGAAT
* * *
158349045 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
158349074 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
158349102 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
158349132 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
158349147 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:158357030 original size:30 final size:29
Alignment explanation
Indices: 158356936--158357037 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
158356926 TATAGTGAAT
* * *
158356936 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
158356965 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
158356993 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
158357023 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
158357038 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:158363823 original size:27 final size:27
Alignment explanation
Indices: 158363781--158363900 Score: 123
Period size: 27 Copynumber: 4.4 Consensus size: 27
158363771 TGGATAAGTT
* * *
158363781 GTAGAATTAACGAAATACCCCTGTAGA
1 GTAGAATTACCAAAATACCCCTGTAGG
* * *
158363808 ATAGAATTACCAAAATACCCTTATAGG
1 GTAGAATTACCAAAATACCCCTGTAGG
* *
158363835 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCAAAATACCCCTGTAGG
* * * *
158363862 GTAGAATTACCAAGATGCCCTTGTGGG
1 GTAGAATTACCAAAATACCCCTGTAGG
*
158363889 GTAAAATTACCA
1 GTAGAATTACCA
158363901 TTTTGCCCCT
Statistics
Matches: 75, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 75 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (27 bp):
GTAGAATTACCAAAATACCCCTGTAGG
Done.