Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 512 of 770
Found at i:158764644 original size:53 final size:53
Alignment explanation
Indices: 158764502--158764664 Score: 208
Period size: 53 Copynumber: 3.1 Consensus size: 53
158764492 AGCATGGCTG
* * * * * *
158764502 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGA-TCGTGGTAG-GCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATAGATATTTGTGGCAGAGCCA
158764552 CCAGAACAGATATATGTGGCAGAGCCACCAGATAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATAGATATTTGTGGCAGAGCCA
* * *
158764605 CCAGATCA-ATATTTGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-AGATATTTGTGGCAGAGCCA
158764658 CCAGAAC
1 CCAGAAC
158764665 GCTTCCTCCA
Statistics
Matches: 99, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
50 12 0.12
51 21 0.21
52 30 0.30
53 36 0.36
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.19
Consensus pattern (53 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATAGATATTTGTGGCAGAGCCA
Found at i:158766300 original size:26 final size:26
Alignment explanation
Indices: 158766264--158766397 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
158766254 CATGAAATTC
158766264 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
158766290 TTATCATGAAACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
158766315 TTATCATGAAACA-TTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
158766340 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
158766366 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
158766392 TTATCA
1 TTATCA
158766398 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 2, Indels: 4
0.95 0.02 0.04
Matches are distributed among these distances:
24 8 0.08
25 31 0.30
26 65 0.62
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:158766342 original size:50 final size:52
Alignment explanation
Indices: 158766264--158766397 Score: 227
Period size: 50 Copynumber: 2.6 Consensus size: 52
158766254 CATGAAATTC
158766264 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACC-A
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCTA
*
158766315 TTATCATGAAACA-TTACCTAACCCATTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCTA
* *
158766366 TTATCATGGAACATTTACCTAACCTATTATCA
1 TTATCATGAAACATTTACCTAACCCATTATCA
158766398 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
50 35 0.45
51 26 0.33
52 17 0.22
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (52 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCTA
Found at i:158771842 original size:34 final size:34
Alignment explanation
Indices: 158771776--158771842 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
158771766 TTGAATAATA
*
158771776 TTAAGTTCTGTTTCAATGATGAATTTTAATGGAG
1 TTAAGTTCTGTTTCAATGATGAATTTCAATGGAG
* *
158771810 TTAAGTT-TCGTTTGAATGATGAATTTCGATGGA
1 TTAAGTTCT-GTTTCAATGATGAATTTCAATGGA
158771843 TATATGTGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 1 0.03
34 28 0.97
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.43
Consensus pattern (34 bp):
TTAAGTTCTGTTTCAATGATGAATTTCAATGGAG
Found at i:158774809 original size:18 final size:18
Alignment explanation
Indices: 158774763--158774811 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
158774753 CTTGGCCCAT
* *
158774763 TGCAATAACAATAAACAG
1 TGCAGTAACAGTAAACAG
*
158774781 TGCAGTAACAGTAATCAG
1 TGCAGTAACAGTAAACAG
*
158774799 TGTAGTAACAGTA
1 TGCAGTAACAGTA
158774812 TACAATCCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.45, C:0.14, G:0.18, T:0.22
Consensus pattern (18 bp):
TGCAGTAACAGTAAACAG
Found at i:158775149 original size:35 final size:35
Alignment explanation
Indices: 158775087--158775157 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
158775077 AAAATGGCAT
158775087 GCTTAATCAGTCATACATCTCATAAAGGCATAATA
1 GCTTAATCAGTCATACATCTCATAAAGGCATAATA
*
158775122 GCTTAATCAGTCATACATCTCATAAAGGCATGATA
1 GCTTAATCAGTCATACATCTCATAAAGGCATAATA
158775157 G
1 G
158775158 TCATTTTACC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (35 bp):
GCTTAATCAGTCATACATCTCATAAAGGCATAATA
Found at i:158778096 original size:16 final size:16
Alignment explanation
Indices: 158778077--158778107 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
158778067 GACAAAAGCT
158778077 GAAAAGCCAAAAAGTC
1 GAAAAGCCAAAAAGTC
158778093 GAAAAGCCAAAAAGT
1 GAAAAGCCAAAAAGT
158778108 GGGCTATCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.16, G:0.19, T:0.06
Consensus pattern (16 bp):
GAAAAGCCAAAAAGTC
Found at i:158778852 original size:34 final size:34
Alignment explanation
Indices: 158778814--158778896 Score: 121
Period size: 34 Copynumber: 2.4 Consensus size: 34
158778804 TTGATTCTGT
* *
158778814 AATGGGCTCAGGCCCAGACTGATATTGCTACTGA
1 AATGGGCTCAGGCCCAAACTGATACTGCTACTGA
* *
158778848 AATGGGCTCAGGCCCAAACTGCTACTGTTACTGA
1 AATGGGCTCAGGCCCAAACTGATACTGCTACTGA
*
158778882 AATGGGCTAAGGCCC
1 AATGGGCTCAGGCCC
158778897 TAATTGAAAC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.22
Consensus pattern (34 bp):
AATGGGCTCAGGCCCAAACTGATACTGCTACTGA
Found at i:158782402 original size:40 final size:40
Alignment explanation
Indices: 158782274--158782404 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
158782264 TATGCTGGAA
* * *
158782274 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
158782314 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
158782354 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
158782394 ATTATATCCGG
1 ATTATATCCGG
158782405 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:158790268 original size:40 final size:40
Alignment explanation
Indices: 158790202--158790352 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
158790192 AAATTGAATG
* * *
158790202 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
158790241 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
158790281 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
158790321 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
158790353 ACGTGATTAT
Statistics
Matches: 89, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
39 15 0.17
40 72 0.81
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:158790366 original size:40 final size:40
Alignment explanation
Indices: 158790238--158790368 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
158790228 TATGCTGGAA
* * *
158790238 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
158790278 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
158790318 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
158790358 ATTATATCCGG
1 ATTATATCCGG
158790369 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:158818262 original size:44 final size:42
Alignment explanation
Indices: 158818185--158818347 Score: 143
Period size: 44 Copynumber: 3.8 Consensus size: 42
158818175 CGTTGGTATT
**
158818185 GATCTGAATTATCA-TGTAAGACTGTGTCTGGGACATAGGCATC
1 GATCTGAATTA--AGTGTAAGACCATGTCTGGGACATAGGCATC
* *
158818228 GATTTGAAATTGAAGTGTAAGACCATGTCTGGGACATCGGCATC
1 GATCTG-AATT-AAGTGTAAGACCATGTCTGGGACATAGGCATC
* ** * * *
158818272 GTATCTG-TTTTCGTATAAGACCCTGTCTGGGACAAAGGCATC
1 G-ATCTGAATTAAGTGTAAGACCATGTCTGGGACATAGGCATC
*
158818314 GATACTGAATTACA-TGTAAGACCACGTCTGGGAC
1 GAT-CTGAATTA-AGTGTAAGACCATGTCTGGGAC
158818348 GTCGACATTG
Statistics
Matches: 95, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
41 2 0.02
42 30 0.32
43 27 0.28
44 31 0.33
45 5 0.05
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (42 bp):
GATCTGAATTAAGTGTAAGACCATGTCTGGGACATAGGCATC
Found at i:158825959 original size:12 final size:13
Alignment explanation
Indices: 158825942--158825973 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
158825932 GCAAATGTTA
158825942 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
158825954 AGTTTTGATGCAT
1 AGTTTTGATGCAT
158825967 -GTTTTGA
1 AGTTTTGA
158825974 AATGTGCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:158836491 original size:30 final size:30
Alignment explanation
Indices: 158836436--158836566 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
158836426 ATAGTGAATC
*
158836436 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
158836465 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
158836495 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
158836523 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
158836553 CGCACACTTAGTGC
1 CGCACACTTAGTGC
158836567 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:158836546 original size:58 final size:58
Alignment explanation
Indices: 158836435--158836566 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
158836425 TATAGTGAAT
* * * * *
158836435 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
158836494 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
158836552 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
158836567 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:158844450 original size:30 final size:30
Alignment explanation
Indices: 158844395--158844525 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
158844385 ATAGTGAATC
*
158844395 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
158844424 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
158844454 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
158844482 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
158844512 CGCACACTTAGTGC
1 CGCACACTTAGTGC
158844526 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:158844505 original size:58 final size:58
Alignment explanation
Indices: 158844394--158844525 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
158844384 TATAGTGAAT
* * * * *
158844394 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
158844453 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
158844511 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
158844526 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:158848288 original size:29 final size:29
Alignment explanation
Indices: 158848255--158848336 Score: 146
Period size: 29 Copynumber: 2.8 Consensus size: 29
158848245 TGACGAGATC
158848255 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
158848284 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
158848313 GGCACTAAGTGTGCAAGCTGGAAA
1 GGCACTAAGTGTGCGTGCTGGAAA
158848337 AAAATACGGC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:158850631 original size:29 final size:29
Alignment explanation
Indices: 158850570--158850668 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
158850560 ACAGTAAGTC
158850570 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
158850598 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
*
158850627 CGCACACTTAGTGCTATACAATT-AAAGT
1 CGCACACTTAGTGCTATACAATTCAAACT
*
158850655 CGCACAATTAGTGC
1 CGCACACTTAGTGC
158850669 CAATCTCATT
Statistics
Matches: 67, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
28 32 0.48
29 34 0.51
30 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:158851130 original size:2 final size:2
Alignment explanation
Indices: 158851125--158851154 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
158851115 TCACACATGC
158851125 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
158851155 GGCCGAATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:158855519 original size:20 final size:20
Alignment explanation
Indices: 158855488--158855565 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
158855478 ATCAGTTTAT
* * *
158855488 GGCACAAAGCCATGAGTAGC
1 GGCACGAAGCCATCAATAGC
*
158855508 GGCTCGAAGCCATCAATAGC
1 GGCACGAAGCCATCAATAGC
*
158855528 GGCACGAAGCCATCAATAGT
1 GGCACGAAGCCATCAATAGC
* *
158855548 GGCACAAAGCCATAAATA
1 GGCACGAAGCCATCAATA
158855566 TCGCAGCAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 50 1.00
ACGTcount: A:0.37, C:0.26, G:0.24, T:0.13
Consensus pattern (20 bp):
GGCACGAAGCCATCAATAGC
Found at i:158856299 original size:8 final size:8
Alignment explanation
Indices: 158856281--158856315 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
158856271 AAGTCCATCC
*
158856281 TTTCAGCT
1 TTTCGGCT
*
158856289 TTTTGGCT
1 TTTCGGCT
158856297 TTTCGGCT
1 TTTCGGCT
158856305 TTTCGGCT
1 TTTCGGCT
158856313 TTT
1 TTT
158856316 GCCGATCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.03, C:0.20, G:0.20, T:0.57
Consensus pattern (8 bp):
TTTCGGCT
Found at i:158857373 original size:36 final size:36
Alignment explanation
Indices: 158857326--158857400 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
158857316 TGACCAAAAT
*
158857326 CACTTTAAAAATTTGTTCAGCCTTCAACACCCTAAA
1 CACTTTAAAAATTCGTTCAGCCTTCAACACCCTAAA
158857362 CACTTTAAAAATTCGTTCAGCCTTCAACACCCTAAA
1 CACTTTAAAAATTCGTTCAGCCTTCAACACCCTAAA
158857398 CAC
1 CAC
158857401 CTCCCCACTC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.36, C:0.31, G:0.05, T:0.28
Consensus pattern (36 bp):
CACTTTAAAAATTCGTTCAGCCTTCAACACCCTAAA
Found at i:158859421 original size:42 final size:42
Alignment explanation
Indices: 158859374--158859492 Score: 134
Period size: 43 Copynumber: 2.8 Consensus size: 42
158859364 TTATGATTTA
* * *
158859374 CCTGTAAGACCACGTCTGGGACGTTGACATTGTATTT-ACTTT
1 CCTGTAAGACCACGTCTGGGACATTGGCATTGTATTTGA-TTG
* * *
158859416 CCTGTAAGACC-CTGTCTAGAACAATGGCATTGATATTTGATTG
1 CCTGTAAGACCAC-GTCTGGGACATTGGCATTG-TATTTGATTG
*
158859459 CATGTAAGACCACGTCTGGGACATTGGCATTGTA
1 CCTGTAAGACCACGTCTGGGACATTGGCATTGTA
158859493 CGAGCTTTCT
Statistics
Matches: 63, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
41 1 0.02
42 27 0.43
43 33 0.52
44 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (42 bp):
CCTGTAAGACCACGTCTGGGACATTGGCATTGTATTTGATTG
Found at i:158862058 original size:39 final size:39
Alignment explanation
Indices: 158861972--158862167 Score: 234
Period size: 39 Copynumber: 5.0 Consensus size: 39
158861962 CAAATCCAAT
* * *
158861972 CACCACCAC-AAAGCATGCGGGACTTTAAGCCCGGATATAA
1 CACCAGCACGAAAGCCTTCGGGAC-TT-AGCCCGGATATAA
* * * *
158862012 TACCAGCAC-AAAGCCTACGCGACTTTAGCCTGGATATAA
1 CACCAGCACGAAAGCCTTCGGGAC-TTAGCCCGGATATAA
* *
158862051 CACCAGCACGAATGCCTTCGGGACTTAGCCCAGATATAA
1 CACCAGCACGAAAGCCTTCGGGACTTAGCCCGGATATAA
* *
158862090 CACCAACACGAATGCCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTTCGGGACTTAGCCCGGATATAA
* *
158862129 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGACATAA
1 CACCAGCACGAAAGCCTTCGGGACTTAGCCCGGATATAA
158862168 TTCTCCATTA
Statistics
Matches: 139, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 107 0.77
40 32 0.23
ACGTcount: A:0.32, C:0.31, G:0.20, T:0.17
Consensus pattern (39 bp):
CACCAGCACGAAAGCCTTCGGGACTTAGCCCGGATATAA
Found at i:158863492 original size:68 final size:67
Alignment explanation
Indices: 158863446--158863603 Score: 262
Period size: 68 Copynumber: 2.3 Consensus size: 67
158863436 ATACTATATA
* *
158863446 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATAAGGGATGTATCCCATGTACACAAGAGAGCTACG-GAGAGATA
158863511 AAT
65 AAT
158863514 GTAGCTAGGTCACATGTGTGATAAGGGATGTATCCCATGTACACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATAAGGGATGTATCCCATGTACACAAGAGAGCTACG-GAGAGATA
158863579 AAT
65 AAT
* *
158863582 GTAGCTAGGTCGCATGAGTGAT
1 GTAGCTAGGTCACATGTGTGAT
158863604 TCCAAGTGAA
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 86 1.00
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.24
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATAAGGGATGTATCCCATGTACACAAGAGAGCTACGGAGAGATAA
AT
Found at i:158866149 original size:29 final size:29
Alignment explanation
Indices: 158866125--158866218 Score: 161
Period size: 29 Copynumber: 3.2 Consensus size: 29
158866115 TCGCACACCC
* *
158866125 AGTGCCGTATTTTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
158866154 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
158866183 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
158866212 AGTGCCA
1 AGTGCCA
158866219 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 62 1.00
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:158866150 original size:58 final size:58
Alignment explanation
Indices: 158866087--158866218 Score: 158
Period size: 58 Copynumber: 2.3 Consensus size: 58
158866077 AATTTAAGCC
* * * * *
158866087 CGCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCA
* * * **
158866145 TGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA
158866203 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
158866219 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
58 61 0.98
59 1 0.02
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA
Found at i:158867567 original size:18 final size:18
Alignment explanation
Indices: 158867535--158867572 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
158867525 TCCACACCCA
158867535 TTTTTTTTCATCATTATCTT
1 TTTTTTTTCA-CATT-TCTT
158867555 TTTTTTTTC-CATTTCTT
1 TTTTTTTTCACATTTCTT
158867572 T
1 T
158867573 ATTCTCCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.28
18 4 0.22
20 9 0.50
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTTTTCACATTTCTT
Found at i:158869775 original size:40 final size:40
Alignment explanation
Indices: 158869667--158869876 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
158869657 CGGGATTTAA
* * * * *
158869667 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
158869707 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
158869747 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
158869787 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
158869827 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
158869867 CCGGATATAT
1 CCGGATATAT
158869877 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:158877640 original size:68 final size:67
Alignment explanation
Indices: 158877559--158877780 Score: 236
Period size: 66 Copynumber: 3.3 Consensus size: 67
158877549 CATCATGTGT
*
158877559 ACAAGA-AGGCTACGAGATACTATATAGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCAT
1 ACAAGAGA-GCTACGAGAGA-TATATAGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCAT
158877623 GTAG
64 GTAG
* * * *
158877627 ACAAGAGAGCTACGTGAGAGATA-AATAGCTAGGTCACATGTGTGATACGGGATGTATCCCACGT
1 ACAAGAGAGCTACGAGAGATATATAGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGT
158877691 AG
66 AG
* * * * * * *
158877693 ACAAGAGAGCTACGTGAGAGATAAAT-GTAGCTAGGTCGCATGAGTGATTCCAAGTGAAGGA-CA
1 ACAAGAGAGCTAC--GAGAGATATATAGTAGCTAGGTCACATGTGTGA-T--ACGGGATGTATC-
158877756 CCATGTAG
60 CCATGTAG
158877764 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
158877781 TAAATCGGCT
Statistics
Matches: 130, Mismatches: 16, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
66 54 0.42
67 3 0.02
68 40 0.31
69 6 0.05
70 1 0.01
71 26 0.20
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGAGAGATATATAGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGT
AG
Found at i:158877668 original size:66 final size:67
Alignment explanation
Indices: 158877584--158877740 Score: 271
Period size: 66 Copynumber: 2.3 Consensus size: 67
158877574 GATACTATAT
*
158877584 AGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGAT
1 AGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCACGTAGACAAGAGAGCTACGTGAGAGAT
158877649 AA
66 AA
158877651 A-TAGCTAGGTCACATGTGTGATACGGGATGTATCCCACGTAGACAAGAGAGCTACGTGAGAGAT
1 AGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCACGTAGACAAGAGAGCTACGTGAGAGAT
158877715 AA
66 AA
* *
158877717 ATGTAGCTAGGTCGCATGAGTGAT
1 A-GTAGCTAGGTCACATGTGTGAT
158877741 TCCAAGTGAA
Statistics
Matches: 85, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
66 65 0.76
67 1 0.01
68 19 0.22
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.23
Consensus pattern (67 bp):
AGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCACGTAGACAAGAGAGCTACGTGAGAGAT
AA
Found at i:158884670 original size:39 final size:38
Alignment explanation
Indices: 158884608--158884804 Score: 243
Period size: 39 Copynumber: 5.1 Consensus size: 38
158884598 CCCAAATCCA
* * * *
158884608 AACACCACCACAAAGCATGCGGGACTTTAGCCCGGATAT
1 AACACCAGCACAATGCCTTCGGGAC-TTAGCCCGGATAT
* * *
158884647 AATACCAGCACAAAGCCTACGGGACTTTAGCCCGGATAT
1 AACACCAGCACAATGCCTTCGGGAC-TTAGCCCGGATAT
* *
158884686 AACACCAGCATGAATGCCTTCGGCACTTAGCCCGGATAT
1 AACACCAGCA-CAATGCCTTCGGGACTTAGCCCGGATAT
158884725 AACACCAGCACGAATG-CTGTCGGGACTTAGCCCGGATAT
1 AACACCAGCAC-AATGCCT-TCGGGACTTAGCCCGGATAT
*
158884764 AACACCAGCACGAATGCCTTCGGGACTTAGCTCGGATAT
1 AACACCAGCAC-AATGCCTTCGGGACTTAGCCCGGATAT
158884803 AA
1 AA
158884805 TTCTCCATTA
Statistics
Matches: 142, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 127 0.89
40 13 0.09
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.18
Consensus pattern (38 bp):
AACACCAGCACAATGCCTTCGGGACTTAGCCCGGATAT
Found at i:158887029 original size:40 final size:40
Alignment explanation
Indices: 158886984--158887150 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
158886974 CGGAATATAA
158886984 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
158887024 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
158887064 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
158887104 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
158887143 CCGGATAT
1 CCGGATAT
158887151 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:158895298 original size:29 final size:28
Alignment explanation
Indices: 158895228--158895302 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
158895218 ATACTCGATT
* *
158895228 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
158895256 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
158895285 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
158895303 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:158895319 original size:29 final size:29
Alignment explanation
Indices: 158895286--158895359 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
158895276 CCTTCGAGCT
158895286 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
158895315 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
158895344 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
158895360 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:158903171 original size:29 final size:28
Alignment explanation
Indices: 158903101--158903175 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
158903091 ATACTCGATT
* *
158903101 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
158903129 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
158903158 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
158903176 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:158903192 original size:29 final size:29
Alignment explanation
Indices: 158903159--158903232 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
158903149 CCTTCGAGCT
158903159 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
158903188 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
158903217 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
158903233 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:158904773 original size:20 final size:20
Alignment explanation
Indices: 158904744--158904783 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
158904734 CGATTTAGGG
**
158904744 ATGTCACAAGTTACATGGGC
1 ATGTCACAAGCCACATGGGC
*
158904764 ATGTCCCAAGCCACATGGGC
1 ATGTCACAAGCCACATGGGC
158904784 GTGTGTGACC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.28, G:0.25, T:0.20
Consensus pattern (20 bp):
ATGTCACAAGCCACATGGGC
Found at i:158909919 original size:31 final size:31
Alignment explanation
Indices: 158909881--158909990 Score: 175
Period size: 31 Copynumber: 3.5 Consensus size: 31
158909871 TTTAACGGCT
158909881 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
**
158909912 ACTGGGCCGAAGCCTTAACATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
158909943 ACTGGGCCGAAGCCTTTTCATAAATCATACC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
158909974 ATTGGGCCAAAGCCTTT
1 ACTGGGCCGAAGCCTTT
158909991 ACTGTAAACA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 72 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:158910223 original size:24 final size:24
Alignment explanation
Indices: 158910196--158910303 Score: 110
Period size: 25 Copynumber: 4.4 Consensus size: 24
158910186 CTGGAGGCCT
158910196 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
*
158910220 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTAATAAACTGGGGCAA
** *
158910244 AGCCCTTTTCGGTAAACTAGGGCAA
1 AGCCCTTTT-AATAAACTGGGGCAA
** *
158910269 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-AATAAACTGGGGCAA
*
158910294 AGTCCTTTTA
1 AGCCCTTTTA
158910304 GCACTTCCTC
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
23 7 0.09
24 24 0.32
25 44 0.59
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:158910266 original size:25 final size:25
Alignment explanation
Indices: 158910209--158910302 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
158910199 CTCTTTTAAT
*
158910209 AACTGGGGCAAAGCCCTTTT-GATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
158910233 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
158910258 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
* *
158910283 AACTGGGGCATAGTCCTTTT
1 AACTGGGGCAAAGCCCTTTT
158910303 AGCACTTCCT
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
24 20 0.31
25 44 0.69
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:158911210 original size:27 final size:27
Alignment explanation
Indices: 158911180--158911244 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
158911170 GGGCATATTC
*
158911180 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACA
* * *
158911207 GTCACTTTACCCTACAGGGGCTTTACA
1 GTCATTTTACCATACAAGGGCTTTACA
*
158911234 GTCTTTTTACC
1 GTCATTTTACC
158911245 TAATAAGAGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACA
Found at i:158911318 original size:27 final size:27
Alignment explanation
Indices: 158911288--158911345 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
158911278 GGGTGTTTTG
*
158911288 GTAAATCTACAAACGAAGGGTATTTCA
1 GTAAATCTACAAACCAAGGGTATTTCA
* * ** *
158911315 GTAATTTTGTAAACCAAGGGTATTTCT
1 GTAAATCTACAAACCAAGGGTATTTCA
158911342 GTAA
1 GTAA
158911346 TTTTGTAAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (27 bp):
GTAAATCTACAAACCAAGGGTATTTCA
Found at i:158911346 original size:27 final size:27
Alignment explanation
Indices: 158911303--158911699 Score: 196
Period size: 27 Copynumber: 14.7 Consensus size: 27
158911293 TCTACAAACG
** *
158911303 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTGTAAATC
158911330 AAGGGTATTTCT-GTAATTTTGTAAATC
1 AAGGGTATTT-TGGTAATTTTGTAAATC
** *
158911357 -AGGGATATTTTGGTAATTTTACAAATT
1 AAGGG-TATTTTGGTAATTTTGTAAATC
* * * *
158911384 GAGGGTATTTCGGTAATTTCGCAAA-C
1 AAGGGTATTTTGGTAATTTTGTAAATC
* * **
158911410 TAGTGGTATCTTGGTAATTTTACAAA-C
1 AAG-GGTATTTTGGTAATTTTGTAAATC
* **
158911437 TAGGGGTATTTTGGTAATTTTACAAA-C
1 -AAGGGTATTTTGGTAATTTTGTAAATC
* * ** *
158911464 AAGGGGTATTTTAGCAATTTTACAGA-C
1 AA-GGGTATTTTGGTAATTTTGTAAATC
* * * *
158911491 TAGAGTATTTTGGTAATTTTACT-GATC
1 AAGGGTATTTTGGTAATTTT-GTAAATC
* *
158911518 GAGGGTATTTTGGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTGTAAATC
*
158911545 AAGGGTATTTTAGTAATTTTGTAAATC
1 AAGGGTATTTTGGTAATTTTGTAAATC
* ***** *
158911572 GAGGGTAAAACAGTAATTCTGTAAATC
1 AAGGGTATTTTGGTAATTTTGTAAATC
***** *
158911599 AAGGGTAAAACAGTAATTTTATAAATC
1 AAGGGTATTTTGGTAATTTTGTAAATC
* *** *
158911626 AAGAGTAAAATGGTAATTCTGTAAATC
1 AAGGGTATTTTGGTAATTTTGTAAATC
**** * *
158911653 AAGGGTAAAACGGTAATTCTATAAATC
1 AAGGGTATTTTGGTAATTTTGTAAATC
* *
158911680 GAGGGTACTTTGGTAATTTT
1 AAGGGTATTTTGGTAATTTT
158911700 ACAAGTCGAG
Statistics
Matches: 302, Mismatches: 58, Indels: 20
0.79 0.15 0.05
Matches are distributed among these distances:
26 26 0.09
27 271 0.90
28 5 0.02
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.37
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTGTAAATC
Found at i:158911373 original size:54 final size:54
Alignment explanation
Indices: 158911304--158911578 Score: 220
Period size: 54 Copynumber: 5.1 Consensus size: 54
158911294 CTACAAACGA
** **
158911304 AGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCT-GTAATTTTGTAAATC-
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT-TGGTAATTTTGTAAATCG
*** * * * *
158911357 AGGGATATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCGCAAA-CT
1 AGGG-TATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCG
* * * ** *
158911411 AGTGGTATCTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA-CA
1 AG-GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCG
* * * * * * *
158911465 AGGGGTATTTTAGCAATTTTACAGA-CTAGAGTATTTTGGTAATTTTACT-GATCG
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTT-GTAAATCG
** *
158911519 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCG
158911573 AGGGTA
1 AGGGTA
158911579 AAACAGTAAT
Statistics
Matches: 173, Mismatches: 40, Indels: 17
0.75 0.17 0.07
Matches are distributed among these distances:
53 42 0.24
54 128 0.74
55 3 0.02
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCG
Found at i:158911471 original size:81 final size:77
Alignment explanation
Indices: 158911278--158911565 Score: 252
Period size: 81 Copynumber: 3.6 Consensus size: 77
158911268 CACCCTACAA
* * * * * *
158911278 GGGTGTTTTGGTAAATCTACAAACGAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTG
1 GGGTATTTTGGTAATTTTACAAAC-AAGGGTATTTCAGTAATTTTGCAAA-CTAGGGTATTT-GG
**
158911343 TAATTTTGTAAATCAG
63 TAATTTTACAAAT-AG
* ** * *
158911359 GGATATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCGCAAACTAGTGGTATCTTGG
1 GGGTATTTTGGTAATTTTACAAA-CAAGGGTATTTCAGTAATTTTGCAAACTAG-GGTAT-TTGG
158911424 TAATTTTACAAACTAG
63 TAATTTTACAAA-TAG
* * * * *
158911440 GGGTATTTTGGTAATTTTACAAACAAGGGGTATTTTAGCAATTTTACAGACTAGAGTATTTTGGT
1 GGGTATTTTGGTAATTTTACAAACAA-GGGTATTTCAGTAATTTTGCAAACTAGGGTA-TTTGGT
** *
158911505 AATTTTACTGATCG
64 AATTTTACAAATAG
** *
158911519 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTG
1 -GGGTATTTTGGTAATTTTACAAA-CAAGGGTATTTCAGTAATTTTG
158911566 TAAATCGAGG
Statistics
Matches: 169, Mismatches: 30, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
79 2 0.01
80 59 0.35
81 105 0.62
82 3 0.02
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.40
Consensus pattern (77 bp):
GGGTATTTTGGTAATTTTACAAACAAGGGTATTTCAGTAATTTTGCAAACTAGGGTATTTGGTAA
TTTTACAAATAG
Found at i:158914043 original size:31 final size:31
Alignment explanation
Indices: 158914005--158914114 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
158913995 TTTAACGGTT
158914005 ACTGGGCCAAAGCCTTTTCATAAATCATATC
1 ACTGGGCCAAAGCCTTTTCATAAATCATATC
*
158914036 ACTGGGCCAAAGCCTTATCATAAATCATATC
1 ACTGGGCCAAAGCCTTTTCATAAATCATATC
*
158914067 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCAAAGCCTTTTCATAAATCATATC
* *
158914098 ATTGGGCCGAAGCCTTT
1 ACTGGGCCAAAGCCTTT
158914115 ACTGTAAACG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 75 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (31 bp):
ACTGGGCCAAAGCCTTTTCATAAATCATATC
Found at i:158914390 original size:25 final size:25
Alignment explanation
Indices: 158914333--158914426 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
158914323 CTCTTTTAAT
*
158914333 AACTAGGGCAAAGCCCTTTT-GATA
1 AACTAGGGCAAAGCCCTTTTCGGTA
*
158914357 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGGTA
*
158914382 AACTAGGGCAAAGCCTTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGGTA
*
158914407 AACTAGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
158914427 AGCACTTCCT
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
24 19 0.30
25 44 0.70
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGGTA
Found at i:158915269 original size:27 final size:27
Alignment explanation
Indices: 158915207--158915271 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
158915197 AGGGCATATC
*
158915207 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACA
* *
158915234 GTCACTTTACCCTACAGGGGCT-TTACA
1 GTCATTTTACCATACAGGGG-TATTACA
*
158915261 GTCTTTTTACC
1 GTCATTTTACC
158915272 TAATAGGGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACA
Found at i:158915354 original size:27 final size:27
Alignment explanation
Indices: 158915324--158915658 Score: 169
Period size: 27 Copynumber: 12.4 Consensus size: 27
158915314 GTAAATCTAC
*
158915324 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
158915351 AAACCAATGGTATTTTA-TAATTTTAG-
1 AAACCAAGGGTATTTTAGTAATTTT-GT
*
158915377 AAAGTCAAGGGTATTTCT-GTAATTTTGT
1 AAA-CCAAGGGTATTT-TAGTAATTTTGT
* * * **
158915405 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
*** ** ***
158915432 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
* **
158915459 AAACC-AGTGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTTAGTAATTTTGT
* * * * *
158915486 AAGCTAGGGGTATTTTGGTAATTTTAT
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * **
158915513 AAACCAGGGGTATTTTAGCAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * * **
158915540 AGA-CTAGGGTATTTTTGTAATATTACT
1 AAACCAAGGGTATTTTAGTAAT-TTTGT
* * * *
158915567 -GATCGAGGGTATTTTGGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
158915593 AAACTAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * **** *
158915620 AAATCGAGGGTAAAACAGTAATTCTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
158915647 AAATCAAGGGTA
1 AAACCAAGGGTA
158915659 AAACAGTAAT
Statistics
Matches: 246, Mismatches: 51, Indels: 22
0.77 0.16 0.07
Matches are distributed among these distances:
26 32 0.13
27 202 0.82
28 12 0.05
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:158915426 original size:81 final size:78
Alignment explanation
Indices: 158915331--158915617 Score: 217
Period size: 81 Copynumber: 3.6 Consensus size: 78
158915321 TACAAACCAA
** * *
158915331 GGGTATTTCAGTAATTTTGTAAACCAATGGTATTTTA-TAATTTTAGAAAGTCAAGGGTATTTCT
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTA-AAAG-CAAGGGTATTT-T
158915395 GTAATTTTGTAAATCAG
63 GTAATTTT-TAAATCAG
* *** ** * *
158915412 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-CCAGTGGTATTTTG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTA-AAAGCAAG-GGTATTTT-
*
158915476 GTAA-TTTTACAAGCTAG
63 GTAATTTTTA-AATC-AG
* * * *
158915493 GGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTAGCAATTTT-ACAGACTAGGGTATTTTTG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTAAAAG-CAAGGGTA-TTTTG
* *
158915557 TAA-TATTACTGATC-G
64 TAATTTTTA--AATCAG
* *
158915572 AGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTAGTAATTTT
1 -GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTT
158915618 GTAAATCGAG
Statistics
Matches: 163, Mismatches: 33, Indels: 21
0.75 0.15 0.10
Matches are distributed among these distances:
79 5 0.03
80 63 0.39
81 85 0.52
82 10 0.06
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (78 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTAAAAGCAAGGGTATTTTGTA
ATTTTTAAATCAG
Found at i:158915626 original size:54 final size:54
Alignment explanation
Indices: 158915303--158915631 Score: 260
Period size: 54 Copynumber: 6.1 Consensus size: 54
158915293 TCACCCTACA
* * * * *
158915303 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAA-CC
1 AGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCC
* * * *
158915356 AATGGTATTTT-ATAATTTTAGAAAGTCAAGGGTATTTCT-GTAATTTTGTAAAT-C
1 -AGGGTATTTTGGTAATTTTACAAACT-AAGGGTATTT-TAGTAATTTTGTAAATCC
* * ** ***
158915410 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-CC
1 A-GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCC
* * * *
158915464 AGTGGTATTTTGGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTATAAA-CC
1 AG-GGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCC
* * * * ** * *
158915518 AGGGGTATTTTAGCAATTTTACAGACT-AGGGTATTTTTGTAATATTACT-GATCG
1 A-GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAAT-TTTGTAAATCC
** *
158915572 AGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCC
158915626 AGGGTA
1 AGGGTA
158915632 AAACAGTAAT
Statistics
Matches: 218, Mismatches: 44, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
53 49 0.22
54 156 0.72
55 13 0.06
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCC
Found at i:158915659 original size:27 final size:27
Alignment explanation
Indices: 158915609--158915739 Score: 208
Period size: 27 Copynumber: 4.9 Consensus size: 27
158915599 AGGGTATTTT
*
158915609 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
158915636 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
158915663 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
158915690 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
158915717 AGTAATTCTATAAATCGAGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
158915740 CATTGGTAAT
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:158915747 original size:54 final size:54
Alignment explanation
Indices: 158915609--158915766 Score: 221
Period size: 54 Copynumber: 2.9 Consensus size: 54
158915599 AGGGTATTTT
* * ** *
158915609 AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
158915663 AGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
* *
158915717 AGTAATTCTATAAATCGAGGGTACATTGGTAATT-T-TACAAGTCGAGGGTA
1 AGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTA-AA-TCGAGGGTA
158915767 TTTCAATAAT
Statistics
Matches: 95, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
52 2 0.02
53 3 0.03
54 90 0.95
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.29
Consensus pattern (54 bp):
AGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:158915749 original size:81 final size:81
Alignment explanation
Indices: 158915610--158915766 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 81
158915600 GGGTATTTTA
* * *
158915610 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTACA
158915675 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * *** *
158915691 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTACATTGGTAATTTTACA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTACA
*
158915756 AGTCGAGGGTA
66 AATCGAGGGTA
158915767 TTTCAATAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 66 1.00
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.29
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTACA
AATCGAGGGTAAAATG
Found at i:158918695 original size:40 final size:40
Alignment explanation
Indices: 158918650--158918816 Score: 142
Period size: 40 Copynumber: 4.2 Consensus size: 40
158918640 CGGAATATAA
158918650 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
158918690 CCGGATAAAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
158918730 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
158918770 CCGGATA-AATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
158918809 CCGGATAT
1 CCGGATAT
158918817 CATTCAATTT
Statistics
Matches: 99, Mismatches: 25, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
39 29 0.29
40 70 0.71
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:158929011 original size:40 final size:39
Alignment explanation
Indices: 158928846--158929029 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
158928836 AAATTGAATG
* * *
158928846 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
158928886 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
158928926 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
158928966 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
158929005 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
158929030 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:158929054 original size:80 final size:81
Alignment explanation
Indices: 158928886--158929074 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
158928876 GCTGGAAATT
* * * *
158928886 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
158928951 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
158928967 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
158929030 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
158929046 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
158929075 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:158937131 original size:40 final size:39
Alignment explanation
Indices: 158936966--158937149 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
158936956 AAATTGAATG
* * *
158936966 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
158937006 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
158937046 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
158937086 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
158937125 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
158937150 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:158937174 original size:80 final size:81
Alignment explanation
Indices: 158937006--158937194 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
158936996 GCTGGAAATT
* * * *
158937006 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
158937071 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
158937087 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
158937150 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
158937166 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
158937195 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:158941691 original size:40 final size:40
Alignment explanation
Indices: 158941606--158941756 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
158941596 AATTGAATGA
* * * *
158941606 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
158941646 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
158941687 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
158941726 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
158941757 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:158941770 original size:40 final size:40
Alignment explanation
Indices: 158941643--158941772 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
158941633 ATGCTGGAAA
* * *
158941643 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
158941683 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
158941723 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
158941763 TTATATCCGG
1 TTATATCCGG
158941773 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:158941771 original size:80 final size:80
Alignment explanation
Indices: 158941605--158941772 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
158941595 AAATTGAATG
* *
158941605 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
158941670 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
158941685 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
158941748 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
158941765 ATATCCGG
1 ATATCCGG
158941773 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:158943232 original size:42 final size:43
Alignment explanation
Indices: 158943149--158943242 Score: 122
Period size: 42 Copynumber: 2.2 Consensus size: 43
158943139 TCCCAGACGT
* *
158943149 GGTCTTACATGTAATCAAATATTGATGCCACTGTCTCAGACAG
1 GGTCTTACATGAAATCAAATATAGATGCCACTGTCTCAGACAG
*
158943192 GGTCTTACATGAAATCAAATA-AGATGCCGA-TGTC-CAAGACAT
1 GGTCTTACATGAAATCAAATATAGATGCC-ACTGTCTC-AGACAG
158943234 GGTCTTACA
1 GGTCTTACA
158943243 CGTAATTTCA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
41 1 0.02
42 24 0.52
43 21 0.46
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (43 bp):
GGTCTTACATGAAATCAAATATAGATGCCACTGTCTCAGACAG
Found at i:158944174 original size:54 final size:54
Alignment explanation
Indices: 158944071--158944179 Score: 173
Period size: 54 Copynumber: 2.0 Consensus size: 54
158944061 TGTGAATGTC
* *
158944071 GAATGCTTGAACCCTAGAAATGGTGTTCTTAATCTCTTATTTTTAGCAAACAAA
1 GAATGCTTGAACCCTAGAAATGGTGTTCTTAATCTATTATTTTCAGCAAACAAA
* * *
158944125 GAATGCTTGAACCCTAGAAGTGGTGTTCTTAATCTATTATTTTCGGCAAATAAA
1 GAATGCTTGAACCCTAGAAATGGTGTTCTTAATCTATTATTTTCAGCAAACAAA
158944179 G
1 G
158944180 GAAGATATGG
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (54 bp):
GAATGCTTGAACCCTAGAAATGGTGTTCTTAATCTATTATTTTCAGCAAACAAA
Found at i:158944413 original size:18 final size:18
Alignment explanation
Indices: 158944390--158944424 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
158944380 GACAATTTTG
158944390 CATTTTA-CACAATTAAGT
1 CATTTTATCA-AATTAAGT
158944408 CATTTTATCAAATTAAG
1 CATTTTATCAAATTAAG
158944425 CACACAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.40, C:0.14, G:0.06, T:0.40
Consensus pattern (18 bp):
CATTTTATCAAATTAAGT
Found at i:158951049 original size:40 final size:40
Alignment explanation
Indices: 158951004--158951170 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
158950994 CGGAATATAA
158951004 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
158951044 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAG-
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
158951083 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
158951123 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
158951163 CCGGATAT
1 CCGGATAT
158951171 CATTCAATTT
Statistics
Matches: 105, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 32 0.30
40 73 0.70
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:158951153 original size:79 final size:80
Alignment explanation
Indices: 158951020--158951170 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 80
158951010 ATAATCACGT
* *
158951020 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAG-C
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGGCTTAGCC
158951084 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
158951099 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGGCTTAG
158951162 CCCGGATAT
64 CCCGGATAT
158951171 CATTCAATTT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.05
79 50 0.82
80 8 0.13
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:158953930 original size:13 final size:13
Alignment explanation
Indices: 158953912--158953937 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
158953902 ATATTATAAT
158953912 TATTTTATGTTAA
1 TATTTTATGTTAA
158953925 TATTTTATGTTAA
1 TATTTTATGTTAA
158953938 AAAAATAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:158955364 original size:40 final size:40
Alignment explanation
Indices: 158955319--158955562 Score: 386
Period size: 40 Copynumber: 6.1 Consensus size: 40
158955309 GCTAAGATCT
158955319 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
* *
158955359 GAAGGCATTTGTGCTAGTTACTATATCCGAGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
* *
158955399 GAAGGCATTTGTGCTAGTTACTATATCTGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
158955439 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
*
158955479 GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
* *
158955519 GAAGGCATTTGTG-TGAGTTG-CTATATCC-AGCTAAATCCC
1 GAAGGCATTTGTGCT-AG-TGACTATATCCGGGCTAAGTCCC
158955558 GAAGG
1 GAAGG
158955563 TACTTGGGTT
Statistics
Matches: 192, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
39 15 0.08
40 175 0.91
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
Found at i:158958845 original size:42 final size:42
Alignment explanation
Indices: 158958786--158958935 Score: 160
Period size: 42 Copynumber: 3.5 Consensus size: 42
158958776 TAATACCAAC
*
158958786 GTCCCAGACATGGTCTTACATGTAATCAAATATTGATGCC-AT
1 GTCCCAGACATGGTCTTACATGTAATCAAATA-CGATGCCGAT
* * ** *
158958828 GTCCCAAACAGGGTCTTACATAAAATCGAATACGATGCCGAT
1 GTCCCAGACATGGTCTTACATGTAATCAAATACGATGCCGAT
* * *
158958870 GTCCCAGACATGGTCTTACACGTAATTTCAAAT-CGATGGCCAAC
1 GTCCCAGACATGGTCTTACATGTAA--TCAAATACGAT-GCCGAT
*
158958914 GTCCCAGACGTGGTCTTACATG
1 GTCCCAGACATGGTCTTACATG
158958936 AAAATCACAT
Statistics
Matches: 88, Mismatches: 16, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
41 6 0.07
42 49 0.56
43 4 0.05
44 29 0.33
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACATGTAATCAAATACGATGCCGAT
Found at i:158960242 original size:20 final size:20
Alignment explanation
Indices: 158960217--158960257 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
158960207 AATAAGAACA
158960217 ATCAAATGAAACAGTAAATT
1 ATCAAATGAAACAGTAAATT
158960237 ATCAAATGAAACAGTAAATT
1 ATCAAATGAAACAGTAAATT
158960257 A
1 A
158960258 AATTAGATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.10, G:0.10, T:0.24
Consensus pattern (20 bp):
ATCAAATGAAACAGTAAATT
Found at i:158961720 original size:20 final size:20
Alignment explanation
Indices: 158961695--158961733 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
158961685 TAATGGAAGT
158961695 TGATACTACTTTCAGTTGGC
1 TGATACTACTTTCAGTTGGC
158961715 TGATACTACTTTCAGTTGG
1 TGATACTACTTTCAGTTGG
158961734 TATTATGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.41
Consensus pattern (20 bp):
TGATACTACTTTCAGTTGGC
Found at i:158963039 original size:27 final size:26
Alignment explanation
Indices: 158963009--158963150 Score: 158
Period size: 27 Copynumber: 5.3 Consensus size: 26
158962999 TTAGTTTACC
*
158963009 AAATTACCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACC-CTGGTTTATA
*
158963036 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCC-TGGTTTATA
* *
158963063 AAATCACCAAAATACCCCTAGTTTATA
1 AAATTACCAAAATA-CCCTGGTTTATA
* * *
158963090 AAATTACCAAAATACCCTCGATCAGTA
1 AAATTACCAAAATACCCTGGTTTA-TA
* *
158963117 AAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACCAAAATA-CCCTGGTTTATA
158963144 AAATTAC
1 AAATTAC
158963151 TGAAATGCCC
Statistics
Matches: 97, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
26 8 0.08
27 80 0.82
28 9 0.09
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.29
Consensus pattern (26 bp):
AAATTACCAAAATACCCTGGTTTATA
Found at i:158963074 original size:54 final size:55
Alignment explanation
Indices: 158963009--158963179 Score: 186
Period size: 54 Copynumber: 3.2 Consensus size: 55
158962999 TTAGTTTACC
* * * * *
158963009 AAATTACCAAAATACCTCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTA-TA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACCCTTCGATCAGTA
* * *
158963063 AAATCACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCC-TCGATCAGTA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACCCTTCGATCAGTA
* * * * **
158963117 AAATTACCAAAGTACCCCCGGTTTATAAAATTACTGAAATGCCC-TCGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACCCTTCGATCAGTA
*
158963171 GAATTACCA
1 AAATTACCA
158963180 TTTTACCCTC
Statistics
Matches: 98, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 4 0.04
54 94 0.96
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (55 bp):
AAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACCCTTCGATCAGTA
Found at i:158963188 original size:27 final size:27
Alignment explanation
Indices: 158963158--158963286 Score: 125
Period size: 27 Copynumber: 4.8 Consensus size: 27
158963148 TACTGAAATG
*
158963158 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
158963185 CCCTCGATTTATA-AATTATCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * *
158963211 CCCTCGATTTACAAAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
158963238 CCCTCAATTTATGGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * *
158963265 CTCTCAATTTAAAAAATTACCA
1 CCCTCGATTTATAGAATTACCA
158963287 AAATACCCCT
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
26 22 0.26
27 63 0.74
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:158963196 original size:54 final size:54
Alignment explanation
Indices: 158963009--158963199 Score: 143
Period size: 54 Copynumber: 3.5 Consensus size: 54
158962999 TTAGTTTACC
* * * * * * * * *
158963009 AAATTACCAAAATACCTCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTA-TA
1 AAATTACCAAAGTACCCCCGATTTATAAAATTACCAAAATACCC-TCGATCAGTA
* * *
158963063 AAATCACCAAAATA-CCCCTAGTTTATAAAATTACCAAAATACCCTCGATCAGTA
1 AAATTACCAAAGTACCCCCGA-TTTATAAAATTACCAAAATACCCTCGATCAGTA
* ** * **
158963117 AAATTACCAAAGTACCCCCGGTTTATAAAATTACTGAAATGCCCTCGATTTGTA
1 AAATTACCAAAGTACCCCCGATTTATAAAATTACCAAAATACCCTCGATCAGTA
* *** *
158963171 GAATTACCATTTTACCCTCGATTTATAAA
1 AAATTACCAAAGTACCCCCGATTTATAAA
158963200 TTATCGTTTC
Statistics
Matches: 109, Mismatches: 25, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
53 6 0.06
54 99 0.91
55 4 0.04
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAGTACCCCCGATTTATAAAATTACCAAAATACCCTCGATCAGTA
Found at i:158963229 original size:53 final size:54
Alignment explanation
Indices: 158963158--158963286 Score: 134
Period size: 53 Copynumber: 2.4 Consensus size: 54
158963148 TACTGAAATG
** * * * *
158963158 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTAT-AAATTATCGTTTCA
1 CCCTCGATTTAAAAAATTACCATTTTACCCTCAATTTATGAAATTACCATTTCA
* * * * *
158963211 CCCTCGATTTACAAAATTATCGTTTTACCCTCAATTTATGGAATTACCATTTTA
1 CCCTCGATTTAAAAAATTACCATTTTACCCTCAATTTATGAAATTACCATTTCA
* *
158963265 CTCTCAATTTAAAAAATTACCA
1 CCCTCGATTTAAAAAATTACCA
158963287 AAATACCCCT
Statistics
Matches: 60, Mismatches: 15, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
53 33 0.55
54 27 0.45
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (54 bp):
CCCTCGATTTAAAAAATTACCATTTTACCCTCAATTTATGAAATTACCATTTCA
Found at i:158963309 original size:27 final size:27
Alignment explanation
Indices: 158963279--158963482 Score: 273
Period size: 27 Copynumber: 7.6 Consensus size: 27
158963269 CAATTTAAAA
* * *
158963279 AATTACCAAAATACCCCTATAGAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
158963306 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
158963333 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
158963360 AATTATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
158963387 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
158963414 AATTATCGAAGTACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
158963441 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
158963468 AATTACCGAGATACC
1 AATTACCGAAATACC
158963483 TTGTGAGGTA
Statistics
Matches: 156, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 156 1.00
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:158967284 original size:25 final size:25
Alignment explanation
Indices: 158967256--158967304 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
158967246 AGGAATTCGT
158967256 ACACACAGTGC-CTCTAATCATTCAC
1 ACACACAGTGCTCT-TAATCATTCAC
* *
158967281 ACACATAGTGCTCTTATTCATTCA
1 ACACACAGTGCTCTTAATCATTCA
158967305 TTATTACACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.31, C:0.31, G:0.08, T:0.31
Consensus pattern (25 bp):
ACACACAGTGCTCTTAATCATTCAC
Found at i:158967514 original size:40 final size:40
Alignment explanation
Indices: 158967468--158967704 Score: 325
Period size: 40 Copynumber: 5.9 Consensus size: 40
158967458 GAATAAACAT
* *
158967468 CACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
158967508 CTCCAGCACGAATCCTCTTCGAGAGTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
158967548 CATCAGTAC-ATATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGA-ATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
158967588 CACCAGCAC-ATATGCTCTTCGGGACTTATCCCGGATACAT
1 CACCAGCACGA-ATGCTCTTCGGGACTTAGCCCGGATATAA
* *
158967628 CACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
158967668 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
158967705 CATATAACTC
Statistics
Matches: 171, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
39 1 0.01
40 169 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:158969254 original size:46 final size:46
Alignment explanation
Indices: 158969201--158969337 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
158969191 TATATATACA
* * *
158969201 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATATC
* * *
158969247 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATATC
* *
158969293 TATCTCATACACATTTCGCATTAGCCATTTGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATAT
158969338 ATACATGTTC
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATATC
Found at i:158969374 original size:47 final size:47
Alignment explanation
Indices: 158969216--158969407 Score: 144
Period size: 46 Copynumber: 4.1 Consensus size: 47
158969206 CATACATATC
* * * * *
158969216 TCACATTAGCCATTTGGCTTTACCACATATCCAT-CTCATACACGTT--
1 TCACATTAGCCATTCGGCCTTACCACATA--CATACACATTCACATTCA
* * * * *
158969262 TCGCATTAGCCATTCGGCTTTACCTCATATC-TATCTCATACACATT--
1 TCACATTAGCCATTCGGCCTTACCACATA-CATA-CACATTCACATTCA
* * * **
158969308 TCGCATTAGCCATTTGGCCTTACCACATATATACATGTTCACATTCA
1 TCACATTAGCCATTCGGCCTTACCACATACATACACATTCACATTCA
* * *
158969355 TCACATTGGCCATTCGGCCTTATCTCATACATACACATTCACATTCA
1 TCACATTAGCCATTCGGCCTTACCACATACATACACATTCACATTCA
158969402 TCACAT
1 TCACAT
158969408 AACATCCTAA
Statistics
Matches: 120, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
44 1 0.01
45 9 0.08
46 65 0.54
47 45 0.38
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
TCACATTAGCCATTCGGCCTTACCACATACATACACATTCACATTCA
Found at i:158975903 original size:43 final size:42
Alignment explanation
Indices: 158975814--158975903 Score: 108
Period size: 43 Copynumber: 2.1 Consensus size: 42
158975804 TGAGATTATG
* * * *
158975814 TGTAAGACCATATCTAGGATATGACATCGATATGAGGCTTCG
1 TGTAAAACCATAGCTAGGATATGACATCGATATGAGACTTCA
* * *
158975856 TGTAAAACCATAGCTAGGCTATTGGCATCGATATGAGATTTCA
1 TGTAAAACCATAGCTAGGATA-TGACATCGATATGAGACTTCA
158975899 TGTAA
1 TGTAA
158975904 GAACGTATCT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 18 0.45
43 22 0.55
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (42 bp):
TGTAAAACCATAGCTAGGATATGACATCGATATGAGACTTCA
Found at i:158977461 original size:20 final size:20
Alignment explanation
Indices: 158977436--158977488 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
158977426 ACGACCTGCC
*
158977436 CACACGGGCGTGTCCCAAGT
1 CACACGGGTGTGTCCCAAGT
158977456 CACACGGGTGTGTCCCAAGT
1 CACACGGGTGTGTCCCAAGT
158977476 CACACGGGTGTGT
1 CACACGGGTGTGT
158977489 GACCCCTGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (20 bp):
CACACGGGTGTGTCCCAAGT
Found at i:158982730 original size:48 final size:48
Alignment explanation
Indices: 158982671--158982940 Score: 222
Period size: 48 Copynumber: 5.6 Consensus size: 48
158982661 GTAAATTGCC
* * * *
158982671 GATGTCATGTCCCAGACATGGTCTTACACTAGCTTTCATCTCAATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATACT
* * * * * *
158982719 GATGCCATGTCCCAGACATAGTTTTACACTGGCTCTCATA--ATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCA-AT-ACT
* * * * * * * * *
158982767 GTTGCCGTGTACTAGACATGGTCTTACACTAGCGCACATATCGACACC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATACT
* * * *
158982815 GATGCCATGTCCCAGACATGGTCTTACACTAGCGCACCTATCAACACT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATACT
** * * * *
158982863 GATGCCATGTCCTGGACATGGTCTTGCACTGGCTCTCATAACATTACT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATACT
*
158982911 GATGCCATG-CTCCAAACATGGTCTTACACT
1 GATGCCATGTC-CCAGACATGGTCTTACACT
158982941 GGCACACATA
Statistics
Matches: 175, Mismatches: 42, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
46 1 0.01
47 2 0.01
48 172 0.98
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATACT
Found at i:158982930 original size:144 final size:144
Alignment explanation
Indices: 158982669--158982952 Score: 336
Period size: 144 Copynumber: 2.0 Consensus size: 144
158982659 GGGTAAATTG
* *** * **
158982669 CCGATGTCATGTCCCAGACATGGTCTTACACTAGCTTTCATCTCAATGCTGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAACACTGATGCCATGTCCCAG
* ** * * * * *
158982734 ACATAGTTTTACACTGGCTCTCATAATGTGGCCGTTGCCGTGTACTAGACATGGTCTTACACTAG
66 ACATAGTCTTACACTGGCTCTCATAACATGACCGATGCCATGTACCAAACATGGTCTTACACTAG
*
158982799 CGCACATATCGACA
131 CACACATATCGACA
* **
158982813 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACCTATCAACACTGATGCCATGTCCTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAACACTGATGCCATGTCCCAG
* * * * *
158982878 ACATGGTCTTGCACTGGCTCTCATAACATTACTGATGCCATGCT-CCAAACATGGTCTTACACTG
66 ACATAGTCTTACACTGGCTCTCATAACATGACCGATGCCATG-TACCAAACATGGTCTTACACTA
158982942 GCACACATATC
130 GCACACATATC
158982953 ACCCAATGTC
Statistics
Matches: 115, Mismatches: 24, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
144 114 0.99
145 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (144 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAACACTGATGCCATGTCCCAG
ACATAGTCTTACACTGGCTCTCATAACATGACCGATGCCATGTACCAAACATGGTCTTACACTAG
CACACATATCGACA
Found at i:158993522 original size:40 final size:40
Alignment explanation
Indices: 158993450--158993698 Score: 376
Period size: 40 Copynumber: 6.2 Consensus size: 40
158993440 AACATTGGAA
158993450 ATATATCCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
158993489 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
158993529 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
158993569 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
158993609 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
158993648 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
158993689 CTATATCCGG
1 ATATATCCGG
158993699 TTAAATCCCG
Statistics
Matches: 190, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 19 0.10
40 171 0.90
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:158995391 original size:49 final size:49
Alignment explanation
Indices: 158995334--158995555 Score: 215
Period size: 49 Copynumber: 4.7 Consensus size: 49
158995324 GTTGATATCG
158995334 TGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCCGATGCCA
1 TGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCCGATGCCA
* * * * * *
158995383 TGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGATGTCAATGCCA
1 TGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCCGATGCCA
* * * * * *
158995432 TGTCCCAGATAGGTCTTACACTGAC--ACACA-A-C-AAGCTGACGCCA
1 TGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCCGATGCCA
* * **
158995476 TGTCCCAGACAGGTTTTACACT-AGCTTTTATATCCCGAGGCCGATG-CA
1 TGTCCCAGACAGGTCTTACACTGA-CTTTCATATATCGAGGCCGATGCCA
* * *
158995524 TGTCCCAGACATGTCTTACACTGGCTTACATA
1 TGTCCCAGACAGGTCTTACACTGACTTTCATA
158995556 CCACCCAATG
Statistics
Matches: 136, Mismatches: 30, Indels: 15
0.75 0.17 0.08
Matches are distributed among these distances:
43 1 0.01
44 28 0.21
45 1 0.01
46 3 0.02
47 2 0.01
48 29 0.21
49 72 0.53
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (49 bp):
TGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCCGATGCCA
Found at i:158996121 original size:11 final size:11
Alignment explanation
Indices: 158996107--158996139 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
158996097 ATTTTTGGTT
158996107 TAGAAGAGATC
1 TAGAAGAGATC
158996118 TAGAAGAGATC
1 TAGAAGAGATC
158996129 TAGAAGGAGAT
1 TAGAA-GAGAT
158996140 TCATGCATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 16 0.76
12 5 0.24
ACGTcount: A:0.45, C:0.06, G:0.30, T:0.18
Consensus pattern (11 bp):
TAGAAGAGATC
Found at i:158997096 original size:123 final size:123
Alignment explanation
Indices: 158996877--158997215 Score: 606
Period size: 123 Copynumber: 2.8 Consensus size: 123
158996867 GAATTATGTG
158996877 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
158996942 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
*
158997000 AAATGAAATGTGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
158997065 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
158997123 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
158997188 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
158997216 AATTATATCC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:158997239 original size:40 final size:40
Alignment explanation
Indices: 158997184--158997387 Score: 201
Period size: 40 Copynumber: 5.1 Consensus size: 40
158997174 TGAATGATAC
* * * *
158997184 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* * * * * *
158997224 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTACAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* ** *
158997264 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* ** *
158997304 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* * * **
158997344 TCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
158997384 CCGG
1 CCGG
158997388 TTGTATTCCG
Statistics
Matches: 136, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 136 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
Found at i:158997318 original size:80 final size:80
Alignment explanation
Indices: 158997184--158997387 Score: 232
Period size: 80 Copynumber: 2.5 Consensus size: 80
158997174 TGAATGATAC
* * ** * * *
158997184 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAATTG
*
158997249 TGCTAGT-G-ACTACAT
66 TGCAAGTCGTACT--AT
* * * *
158997264 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAATTG
*
158997329 TGCAAGTCGTTCTAT
66 TGCAAGTCGTACTAT
* * *
158997344 TCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
158997388 TTGTATTCCG
Statistics
Matches: 105, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
80 102 0.97
81 1 0.01
82 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAATTG
TGCAAGTCGTACTAT
Found at i:159010697 original size:33 final size:33
Alignment explanation
Indices: 159010667--159011060 Score: 479
Period size: 33 Copynumber: 12.0 Consensus size: 33
159010657 ATGGTACAAC
* * *
159010667 TTGAAAAGGTTATGTACACTTTGTGTGTA-CAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
* * *
159010699 TTGGAAAGGTTAGGCATACTTTGTGTATGCCAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
* *
159010732 ATGAAAAGGTTAGGTATACTTTGTTTATACCAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
** * * *
159010765 TTGAAAAGGAAATGTATACTTTATGTATACAAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
*
159010798 ATGAAAAGGTTAGG--TACTTTGTGTATACCAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
**** *
159010829 TTGAAAAAAAAAGGTATACTTAGTGTATACCAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
* *
159010862 ATGAAAAGGTTAGGTATACTTTGTGTGTACCAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
**
159010895 TTGAAAAGGAAAGGTATACTTTGTGTATACCAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
*
159010928 ATGAAAAGGTTAGGTATACTTTGTGTATACCAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
** *
159010961 TTGAAAAGGAAAGGTATACTTTGTGTCTACCAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
*
159010994 ATGAAAAGGTTAGGTATACTTTGTGTATACCAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
** * *
159011027 TTGAAAAGGAAAAGTATACTTTGTGTGTACCAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
159011060 T
1 T
159011061 CGGAAAGAAA
Statistics
Matches: 302, Mismatches: 57, Indels: 5
0.83 0.16 0.01
Matches are distributed among these distances:
31 24 0.08
32 23 0.08
33 255 0.84
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.36
Consensus pattern (33 bp):
TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
Found at i:159010786 original size:66 final size:66
Alignment explanation
Indices: 159010668--159011059 Score: 592
Period size: 66 Copynumber: 6.0 Consensus size: 66
159010658 TGGTACAACT
* * * * ** * *
159010668 TGAAAAGGTTATGTACACTTTGTGTGTA-CATTTGGAAAGGTTAGGCATACTTTGTGTATGCCAT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGGTATACTTTGTGTATACCAT
159010732 A
66 A
* * * *
159010733 TGAAAAGGTTAGGTATACTTTGTTTATACCATTTGAAAAGGAAATGTATACTTTATGTATACAAT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGGTATACTTTGTGTATACCAT
159010798 A
66 A
** *
159010799 TGAAAAGGTTAGG--TACTTTGTGTATACCATTTGAAAAAAAAAGGTATACTTAGTGTATACCAT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGGTATACTTTGTGTATACCAT
159010862 A
66 A
*
159010863 TGAAAAGGTTAGGTATACTTTGTGTGTACCATTTGAAAAGGAAAGGTATACTTTGTGTATACCAT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGGTATACTTTGTGTATACCAT
159010928 A
66 A
*
159010929 TGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGGTATACTTTGTGTCTACCAT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGGTATACTTTGTGTATACCAT
159010994 A
66 A
* *
159010995 TGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAAGTATACTTTGTGTGTACCAT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGGTATACTTTGTGTATACCAT
159011060 TCGGAAAGAA
Statistics
Matches: 297, Mismatches: 27, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
64 57 0.19
65 24 0.08
66 216 0.73
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.35
Consensus pattern (66 bp):
TGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGGTATACTTTGTGTATACCAT
A
Found at i:159016905 original size:57 final size:56
Alignment explanation
Indices: 159016807--159016925 Score: 143
Period size: 57 Copynumber: 2.1 Consensus size: 56
159016797 ATGAAAAAAA
159016807 GAAAAAAAGAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAG
1 GAAAAAAAGAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAG
** ***
159016863 GAAAGAAAAGAAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAG
1 GAAA-AAAAGAAAAAAAATGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAG
*
159016920 GGAAAA
1 GAAAAA
159016926 GGGGAGGATT
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
56 8 0.15
57 43 0.80
58 3 0.06
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (56 bp):
GAAAAAAAGAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAG
Found at i:159018277 original size:40 final size:40
Alignment explanation
Indices: 159018114--159018279 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
159018104 AAATTGAATG
* * * **
159018114 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGATT
* * * **
159018153 ATATCCGGGTTAAGACCCGAAGGCA-ATGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * *
159018192 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATTATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
159018232 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGATT
159018272 ATATCCGG
1 ATATCCGG
159018280 TTATATTCCG
Statistics
Matches: 101, Mismatches: 22, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
39 44 0.44
40 57 0.56
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:159026751 original size:47 final size:47
Alignment explanation
Indices: 159026692--159027176 Score: 774
Period size: 47 Copynumber: 10.3 Consensus size: 47
159026682 GATGTACAAG
* * *
159026692 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
159026739 GTGTATATATGTGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
159026786 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
159026833 GTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
159026880 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
159026927 GTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
159026974 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
159027021 GTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
159027067 GTGTATATATGAGATAAGACCGAATGGTCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
159027114 GTGTAATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGT-ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
159027162 GTGTATATAATGTGA
1 GTGTATAT-ATGTGA
159027177 CAGCCCAAAA
Statistics
Matches: 407, Mismatches: 28, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
46 42 0.10
47 316 0.78
48 49 0.12
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:159028974 original size:40 final size:38
Alignment explanation
Indices: 159028866--159028975 Score: 141
Period size: 37 Copynumber: 2.9 Consensus size: 38
159028856 CTGAAATTTA
* * *
159028866 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGC
* * *
159028904 TATCCGGGCTAAGA-CCGAAGGCATTCGTGCAAGTTGT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGC
159028941 TAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 T--ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
159028976 ATCGTGATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
37 19 0.31
38 13 0.21
39 13 0.21
40 17 0.27
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGC
Found at i:159028988 original size:40 final size:39
Alignment explanation
Indices: 159028823--159028990 Score: 148
Period size: 40 Copynumber: 4.3 Consensus size: 39
159028813 AGAAATTGAA
* *
159028823 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * *
159028863 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGC-TA-G
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
* * *
159028900 TAGCTATCCGGGCTAAGA-CCGAAGGCATTCGTGCAAGTTG
1 T-GATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
159028940 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
159028980 TGATATCCGGG
1 TGATATCCGGG
159028991 TAAAGTCCCG
Statistics
Matches: 100, Mismatches: 20, Indels: 16
0.74 0.15 0.12
Matches are distributed among these distances:
37 18 0.18
38 15 0.15
39 16 0.16
40 51 0.51
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:159036024 original size:30 final size:30
Alignment explanation
Indices: 159035988--159036088 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
159035978 GACAAGATTG
* * *
159035988 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
159036018 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
159036046 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
159036075 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
159036089 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:159036100 original size:29 final size:28
Alignment explanation
Indices: 159036017--159036092 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
159036007 AAAATTGTAC
* *
159036017 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
159036045 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
159036074 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
159036093 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:159043862 original size:30 final size:30
Alignment explanation
Indices: 159043826--159043926 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
159043816 GACAAGATTG
* * *
159043826 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
159043856 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
159043884 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
159043913 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
159043927 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:159043938 original size:29 final size:28
Alignment explanation
Indices: 159043855--159043930 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
159043845 AAAATTGTAC
* *
159043855 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
159043883 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
159043912 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
159043931 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:159048574 original size:34 final size:33
Alignment explanation
Indices: 159048514--159048578 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 33
159048504 GTTTCAGTTG
*
159048514 GGGCCTTAGCCCATTACAGTATCAGTATCAGTGT
1 GGGCCTGAGCCCATTACAGTATCAGTA-CAGTGT
159048548 GGGCCTGAGCCCATCT-CAGTGA-CAGTACAGT
1 GGGCCTGAGCCCAT-TACAGT-ATCAGTACAGT
159048579 ACAGATATGC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
33 4 0.14
34 22 0.79
35 2 0.07
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (33 bp):
GGGCCTGAGCCCATTACAGTATCAGTACAGTGT
Found at i:159050026 original size:40 final size:40
Alignment explanation
Indices: 159049977--159050184 Score: 249
Period size: 40 Copynumber: 5.2 Consensus size: 40
159049967 TCTTCGGAAT
* * *
159049977 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
159050016 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * *
159050056 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGAGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
159050096 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
159050136 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
159050176 TTAGCCCGG
1 TTAGCCCGG
159050185 GTATCATTCA
Statistics
Matches: 144, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 3 0.02
40 140 0.97
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:159071456 original size:40 final size:39
Alignment explanation
Indices: 159071397--159071478 Score: 110
Period size: 40 Copynumber: 2.1 Consensus size: 39
159071387 AACTTATCGT
*
159071397 CTAAAATGACACTTAGTGTGCAGTTCGAAATAGCTTCGG
1 CTAAAATGACACTTAGTGTGCAATTCGAAATAGCTTCGG
* * * *
159071436 CTAAAAGTGGCACTTGGTGTGCAATTGGAGATAGCTTCGG
1 CTAAAA-TGACACTTAGTGTGCAATTCGAAATAGCTTCGG
159071476 CTA
1 CTA
159071479 TATATATATA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 6 0.16
40 31 0.84
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (39 bp):
CTAAAATGACACTTAGTGTGCAATTCGAAATAGCTTCGG
Found at i:159073542 original size:39 final size:39
Alignment explanation
Indices: 159073458--159073610 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
159073448 TATGGTAACC
** * *
159073458 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
159073498 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
159073537 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
159073576 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
159073611 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:159073583 original size:78 final size:79
Alignment explanation
Indices: 159073427--159073609 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
159073417 TCGTTCAAAC
* * **
159073427 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
159073492 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
159073507 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
159073571 CAATTTGCACAATT
66 CAATTTGCACAATT
159073585 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
159073610 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:159081760 original size:40 final size:40
Alignment explanation
Indices: 159081694--159081844 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
159081684 AAATTGAATG
* * *
159081694 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
159081733 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
159081773 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
159081813 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
159081845 ACTGATTAAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:159089748 original size:40 final size:40
Alignment explanation
Indices: 159089682--159089848 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
159089672 AAATTGAATG
* * *
159089682 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
159089721 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
159089761 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
159089801 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
159089841 ATATCCGG
1 ATATCCGG
159089849 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:159093004 original size:55 final size:54
Alignment explanation
Indices: 159092875--159093063 Score: 211
Period size: 55 Copynumber: 3.5 Consensus size: 54
159092865 AACATACCAT
* * *
159092875 TGCCATGTCTTGACATGGTCTTACGTGGTATCC-TTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTTGCCTTATAGAACTCATCAA
* * * *
159092928 TACCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATTAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAG-AACTCATCAA
* * * ** * *
159092983 TGCCATGTCTTGACAGGGTCTTACATGATTTCTTTACCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAA
*
159093037 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
159093064 ATATCCTTAT
Statistics
Matches: 112, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
52 2 0.02
53 34 0.30
54 33 0.29
55 43 0.38
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAA
Found at i:159093105 original size:47 final size:47
Alignment explanation
Indices: 159093050--159093149 Score: 155
Period size: 47 Copynumber: 2.1 Consensus size: 47
159093040 CATGCCTTGG
* *
159093050 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCATTATCTTACCAAATGCCATGGTCCAAA
* * *
159093097 CATGGTCTTACATGGTATCATTGTCTTACCAAATTCCATGGTCCAAA
1 CATGGTCTTACATGATATCATTATCTTACCAAATGCCATGGTCCAAA
159093144 CATGGT
1 CATGGT
159093150 ATCCTTGTCT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (47 bp):
CATGGTCTTACATGATATCATTATCTTACCAAATGCCATGGTCCAAA
Found at i:159097819 original size:37 final size:37
Alignment explanation
Indices: 159097778--159097850 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
159097768 TATTCACAAT
*
159097778 TTATTCATTATCACATAAACATTATGAACCATTATTA
1 TTATTCATTATCACATAAACATCATGAACCATTATTA
159097815 TTATTCATTATCACATAAACATCATGAACCATTATT
1 TTATTCATTATCACATAAACATCATGAACCATTATT
159097851 CTTACATTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.40, C:0.18, G:0.03, T:0.40
Consensus pattern (37 bp):
TTATTCATTATCACATAAACATCATGAACCATTATTA
Found at i:159099556 original size:55 final size:54
Alignment explanation
Indices: 159099427--159099615 Score: 213
Period size: 55 Copynumber: 3.5 Consensus size: 54
159099417 AACATACCAT
* * * *
159099427 TGCCATGTCTTGACATGGTCTTACGTGGTATCC-TTGCCTT-TTGAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTTGCCTTATAGAACTCATCAA
* * *
159099480 TACCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAG-AACTCATCAA
* * * * *
159099535 TGTCATGTCTTGACATGGTCTTACATGATTTCCTTT-CCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTTGCCTTATAGAACTCATCAA
*
159099589 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
159099616 ATATCCTTAT
Statistics
Matches: 114, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 2 0.02
53 32 0.28
54 35 0.31
55 40 0.35
56 5 0.04
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAA
Found at i:159099612 original size:54 final size:54
Alignment explanation
Indices: 159099427--159099623 Score: 227
Period size: 54 Copynumber: 3.6 Consensus size: 54
159099417 AACATACCAT
* * * * * *
159099427 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTT-TTGAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTTCCTTATAGAACTCATCAA
* * **
159099480 TACCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTT-CCTTATAG-AACTCATCAA
* * * *
159099535 TGTCATGTCTTGACATGGTCTTACATGATTTCCTTTCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTTCCTTATAGAACTCATCAA
*
159099589 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTT
159099624 ATCTTACCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
52 4 0.03
53 29 0.24
54 42 0.35
55 40 0.33
56 5 0.04
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.37
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGATATCCTTTCCTTATAGAACTCATCAA
Found at i:159099657 original size:47 final size:47
Alignment explanation
Indices: 159099602--159099723 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
159099592 CATGCCTTGG
* *
159099602 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
159099649 CATGGTCTTACATGGTATCCTTGTCTTACCAAATTCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
159099696 CATGGTCTTACAAGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
159099724 GTGTTTGTAA
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:159101133 original size:40 final size:39
Alignment explanation
Indices: 159101088--159101217 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
159101078 CGGAATATAA
159101088 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
159101128 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
159101168 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
159101208 CCGGATATAA
1 CCGGATATAA
159101218 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:159101232 original size:40 final size:40
Alignment explanation
Indices: 159101104--159101254 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
159101094 ATAACCATGT
* * *
159101104 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
159101144 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
159101184 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
159101224 GCATAATTGTCTTCGGG-ATTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
159101255 CATTCAATTT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 14 0.16
40 74 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Done.