Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 516 of 770
Found at i:160154447 original size:79 final size:79
Alignment explanation
Indices: 160154235--160154449 Score: 177
Period size: 78 Copynumber: 2.7 Consensus size: 79
160154225 CGAGTGATAT
** * * * * * *
160154235 CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCT-AA-GCCCGAAGGCAATTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCC-GGATAAACTCCCGAAGGCAATTG
** *
160154298 TGCGAGTTATGATAT
65 TGCGAGTTACCATAA
** * * * * *
160154313 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGATAAACTCCCGAAGGCAATTGT
*
160154378 GCGGGTTACCATAA
66 GCGAGTTACCATAA
* **
160154392 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCCGGATAAACT-CCGAAGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGATAAACTCCCGAAGG
160154450 TATGTGATTC
Statistics
Matches: 114, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
77 3 0.03
78 40 0.35
79 40 0.35
80 30 0.26
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.22
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGATAAACTCCCGAAGGCAATTGT
GCGAGTTACCATAA
Found at i:160162400 original size:40 final size:39
Alignment explanation
Indices: 160162250--160162402 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
160162240 AAATGTTCGA
* *
160162250 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
160162289 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
160162328 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
160162367 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
160162403 GGTTACCATA
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:160162418 original size:40 final size:39
Alignment explanation
Indices: 160162251--160162433 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
160162241 AATGTTCGAG
* * *
160162251 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
160162290 TGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
160162329 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
160162368 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
160162408 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
160162434 GTTTGAACGA
Statistics
Matches: 128, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 87 0.68
40 41 0.32
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:160162469 original size:79 final size:79
Alignment explanation
Indices: 160162257--160162471 Score: 177
Period size: 78 Copynumber: 2.7 Consensus size: 79
160162247 CGAGTGATAT
** * * * * * *
160162257 CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCT-AA-GCCCGAAGGCAATTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCC-GGATAAACTCCCGAAGGCAATTG
** *
160162320 TGCGAGTTATGATAT
65 TGCGAGTTACCATAA
** * * * * *
160162335 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGATAAACTCCCGAAGGCAATTGT
*
160162400 GCGGGTTACCATAA
66 GCGAGTTACCATAA
* **
160162414 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCCGGATAAACT-CCGAAGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGATAAACTCCCGAAGG
160162472 TATGTGATTC
Statistics
Matches: 114, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
77 3 0.03
78 40 0.35
79 40 0.35
80 30 0.26
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.22
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGATAAACTCCCGAAGGCAATTGT
GCGAGTTACCATAA
Found at i:160165840 original size:30 final size:30
Alignment explanation
Indices: 160165804--160165904 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
160165794 GACAAGATTG
* * *
160165804 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
160165834 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
160165862 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
160165891 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
160165905 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:160165916 original size:29 final size:28
Alignment explanation
Indices: 160165833--160165908 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
160165823 AAAATTGTAC
* *
160165833 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
160165861 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
160165890 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
160165909 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:160169090 original size:40 final size:39
Alignment explanation
Indices: 160168925--160169108 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
160168915 AAATTGAATG
* * *
160168925 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
160168965 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
160169005 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
160169045 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
160169084 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
160169109 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:160169133 original size:80 final size:81
Alignment explanation
Indices: 160168965--160169153 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
160168955 GCTGGAAATT
* * * *
160168965 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
160169030 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
160169046 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
160169109 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
160169125 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
160169154 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:160177209 original size:40 final size:39
Alignment explanation
Indices: 160177044--160177227 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
160177034 AAATTGAATG
* * *
160177044 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
160177084 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
160177124 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
160177164 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
160177203 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
160177228 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:160177252 original size:80 final size:81
Alignment explanation
Indices: 160177084--160177272 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
160177074 GCTGGAAATT
* * * *
160177084 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
160177149 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
160177165 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
160177228 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
160177244 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
160177273 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:160182052 original size:47 final size:47
Alignment explanation
Indices: 160181998--160182344 Score: 475
Period size: 49 Copynumber: 7.3 Consensus size: 47
160181988 GTATGAGATA
* *
160181998 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
160182045 CATATATGAGATAAGGCCTAATGGCCGATGTGAT-AATGCGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTG
160182093 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTG
160182142 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
160182189 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
160182238 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
160182285 --TATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
160182330 TATAAATGTGATAAG
1 TATATATGTGATAAG
160182345 TCCCGAAGGG
Statistics
Matches: 274, Mismatches: 19, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
45 40 0.15
46 8 0.03
47 88 0.32
48 35 0.13
49 103 0.38
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:160184508 original size:40 final size:40
Alignment explanation
Indices: 160184464--160184694 Score: 392
Period size: 40 Copynumber: 5.8 Consensus size: 40
160184454 GAGAATTGAG
160184464 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
160184504 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
160184544 AGTGATGTATCCGGACTAAGTT-CGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
160184583 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
160184623 AGTAATGCAACCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
160184663 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
160184695 ATCATGCTGG
Statistics
Matches: 181, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 39 0.22
40 142 0.78
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:160184596 original size:79 final size:79
Alignment explanation
Indices: 160184464--160184694 Score: 381
Period size: 79 Copynumber: 2.9 Consensus size: 79
160184454 GAGAATTGAG
160184464 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTT-CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
160184529 AAGAGCATTCGTGCT
65 AAGAGCATTCGTGCT
160184544 AGTGATGTATCCGGACTAAGTTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGA
1 AGTGATGTATCCGGACTAAGTTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGA
160184609 AGAGCATTCGTGCT
66 AGAGCATTCGTGCT
* * * * * * *
160184623 AGTAATGCAACCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAGGTCCCG
1 AGTGATGTATCCGGACTAAGT-TCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
160184688 AAGAGCA
65 AAGAGCA
160184695 ATCATGCTGG
Statistics
Matches: 143, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
79 75 0.52
80 68 0.48
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
AGTGATGTATCCGGACTAAGTTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGA
AGAGCATTCGTGCT
Found at i:160184675 original size:119 final size:120
Alignment explanation
Indices: 160184464--160184694 Score: 392
Period size: 119 Copynumber: 1.9 Consensus size: 120
160184454 GAGAATTGAG
* * * *
160184464 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATGCAACCGGACTAAGTCCCG
*
160184529 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGT-TCGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
160184583 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATGCAACCGGACTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATGCAACCGGACTAAGTCCCG
* *
160184648 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
66 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCA
160184695 ATCATGCTGG
Statistics
Matches: 104, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
119 95 0.91
120 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (120 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATGCAACCGGACTAAGTCCCG
AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:160188668 original size:49 final size:47
Alignment explanation
Indices: 160188505--160188851 Score: 507
Period size: 47 Copynumber: 7.3 Consensus size: 47
160188495 GTATGAGATA
* *
160188505 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
160188552 CATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
160188599 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTG
160188648 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
160188695 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
160188744 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
160188791 TATA-ATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
160188837 TATAAATGTGATAAG
1 TATATATGTGATAAG
160188852 TCCCGAAGGG
Statistics
Matches: 277, Mismatches: 18, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
46 41 0.15
47 143 0.52
49 93 0.34
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:160188679 original size:96 final size:94
Alignment explanation
Indices: 160188505--160188851 Score: 507
Period size: 96 Copynumber: 3.7 Consensus size: 94
160188495 GTATGAGATA
* *
160188505 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCC
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
160188570 TAATGGCCGATGTGATGAATGCGAAAGTG
66 TAATGGCCGATGTGATGAATGTGAAAGTG
* *
160188599 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTGTATATATGTGATAAGG
160188664 CCTAATGGCCGATGTGATGAATGTGAAAGTG
64 CCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
160188695 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATGTGATAAGG
1 --TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* *
160188760 CCGAATGGCCAATGTGATGAATGTGAAAGTG
64 CCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * *
160188791 TATA-ATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTGTATAAATGTGATAAG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
160188852 TCCCGAAGGG
Statistics
Matches: 232, Mismatches: 17, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
93 48 0.21
94 46 0.20
96 95 0.41
98 43 0.19
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (94 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:160199109 original size:40 final size:40
Alignment explanation
Indices: 160199043--160199209 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
160199033 AAATTGAATG
* * *
160199043 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
160199082 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
160199122 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * * **
160199162 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCTCGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
160199202 ATATCCGG
1 ATATCCGG
160199210 TTATATTCCG
Statistics
Matches: 102, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 16 0.16
40 84 0.82
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:160204645 original size:40 final size:40
Alignment explanation
Indices: 160204580--160204813 Score: 151
Period size: 39 Copynumber: 6.0 Consensus size: 40
160204570 ATTTGATGTG
* * *
160204580 TATCTGGGCTTAATGACCCGCAGGCTATATGTTGGAATTA
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
*
160204620 TATCCGGGCTTAAAGACCCGTAGGCTATATGCTGGAATTA
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
* * ** *
160204660 TACCCGGAC-T-AAGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
* * * ** *** *
160204698 TAACTGGACTT-AAGGTCCGCAGGCTACGCGCTGGAAATA
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
* * * *
160204737 TGTCCGGGC-AAAAGTCCCGCAGGCT-TCGA-GCTGGTATTA
1 TATCCGGGCTTAAAGACCCGCAGGCTAT--ATGCTGGAATTA
* ** *
160204776 TA-CCGGGTTTAAATTCCCGCAGGCT-TGTGCTGGTAATT
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGG-AATT
160204814 GGTTTCAAAT
Statistics
Matches: 155, Mismatches: 32, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
38 41 0.26
39 71 0.46
40 43 0.28
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
Found at i:160204723 original size:39 final size:39
Alignment explanation
Indices: 160204597--160204723 Score: 157
Period size: 38 Copynumber: 3.3 Consensus size: 39
160204587 GCTTAATGAC
* * * **
160204597 CCGCAGGCTATATGTTGGAATTATATCCGGGCTTAAAGAC
1 CCGCAGGCTATATGCTGGAATTATAACCGGACTT-AAGGT
* *
160204637 CCGTAGGCTATATGCTGGAATTATACCCGGAC-TAAGGT
1 CCGCAGGCTATATGCTGGAATTATAACCGGACTTAAGGT
* *
160204675 CCGCAGGCTATGTGCTGGAATTATAACTGGACTTAAGGT
1 CCGCAGGCTATATGCTGGAATTATAACCGGACTTAAGGT
160204714 CCGCAGGCTA
1 CCGCAGGCTA
160204724 CGCGCTGGAA
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
38 31 0.41
39 17 0.22
40 28 0.37
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGCAGGCTATATGCTGGAATTATAACCGGACTTAAGGT
Found at i:160209875 original size:13 final size:12
Alignment explanation
Indices: 160209857--160209917 Score: 52
Period size: 13 Copynumber: 4.8 Consensus size: 12
160209847 AGTTTAACAT
160209857 TGCTTTTGAAAAA
1 TGCTTTT-AAAAA
160209870 TGCTTTTAAAAA
1 TGCTTTTAAAAA
*
160209882 GTG-TTGTGGAAAAA
1 -TGCTT-T-TAAAAA
*
160209896 TGCTTTTAAGAAG
1 TGCTTTTAA-AAA
160209909 TGCTTTTAA
1 TGCTTTTAA
160209918 GAAGTACTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
12 9 0.22
13 24 0.60
14 7 0.17
ACGTcount: A:0.34, C:0.07, G:0.20, T:0.39
Consensus pattern (12 bp):
TGCTTTTAAAAA
Found at i:160209918 original size:13 final size:13
Alignment explanation
Indices: 160209896--160209928 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
160209886 TGTGGAAAAA
160209896 TGCTTTTAAGAAG
1 TGCTTTTAAGAAG
160209909 TGCTTTTAAGAAG
1 TGCTTTTAAGAAG
*
160209922 TACTTTT
1 TGCTTTT
160209929 GAAAAGTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.27, C:0.09, G:0.18, T:0.45
Consensus pattern (13 bp):
TGCTTTTAAGAAG
Found at i:160211088 original size:3 final size:3
Alignment explanation
Indices: 160211080--160211136 Score: 105
Period size: 3 Copynumber: 18.7 Consensus size: 3
160211070 TAGTAGCTTC
160211080 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
160211126 ATA ATA ATA AT
1 ATA ATA ATA AT
160211137 GATGATGATG
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 50 0.94
4 3 0.06
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:160211512 original size:14 final size:15
Alignment explanation
Indices: 160211495--160211523 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
160211485 CGAAAAGAAG
160211495 AAAATAAAAA-TAAA
1 AAAATAAAAAGTAAA
160211509 AAAATAAAAAGTAAA
1 AAAATAAAAAGTAAA
160211524 TGATAAATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14
Consensus pattern (15 bp):
AAAATAAAAAGTAAA
Found at i:160213677 original size:44 final size:43
Alignment explanation
Indices: 160213605--160214043 Score: 131
Period size: 44 Copynumber: 10.0 Consensus size: 43
160213595 TCCACTACTG
*
160213605 CTTAGGGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTGCTA
1 CTTAGGAAGATAAGA-CTACAATCTTCAGTCTGCTTCCTTGCTA
* * *
160213649 CATTAGGAAGATAAGACTACAATCTTCAGCCTACTCCCTTGCT-
1 C-TTAGGAAGATAAGACTACAATCTTCAGTCTGCTTCCTTGCTA
* * ** ** *
160213692 GTTCAAGG-AGATAAGGCTAGC-GGCTAAAATCTGCTCTCC-TGCTA
1 CTT--AGGAAGATAAGACTA-CAATCTTCAGTCTGCT-TCCTTGCTA
** * * ** * * * *
160213736 CCTCGGGAAGATAAGATTCGCCGTCTTC-GATCTAC-TCCACTACTG
1 -CTTAGGAAGATAAGACT-ACAATCTTCAG-TCTGCTTCC-TTGCTA
* * * * *
160213781 CTTAGGGAGATAAAATCTACAATCTTCAGCCTACTTCCTTACTA
1 CTTAGGAAGATAAGA-CTACAATCTTCAGTCTGCTTCCTTGCTA
* * * * *
160213825 CATGAGGAAGATAAGACTACAGTCTTAAGCCTGC-TCCTTTGCTG
1 C-TTAGGAAGATAAGACTACAATCTTCAGTCTGCTTCC-TTGCTA
* * * **** ** * *
160213869 CTCAGGAAAATAAGGCTAGTGGCTAAAATCTGCTCCCTTGCTA
1 CTTAGGAAGATAAGACTACAATCTTCAGTCTGCTTCCTTGCTA
** * * * * * * *
160213912 CCTCGGGAAGATAAGATTCGCCATCTTCTA-TCTAC-TCCACTACTG
1 -CTTAGGAAGATAAGACT-ACAATCTTC-AGTCTGCTTCC-TTGCTA
* *
160213957 CTTAGGGAGATAAGATCTACAATCTTCAGTCTGATTCCTTGCTA
1 CTTAGGAAGATAAGA-CTACAATCTTCAGTCTGCTTCCTTGCTA
* * * *
160214001 CATCAGAAAGATAAGACTACAATCTTCAGCCTGCTCCCTTGCT
1 C-TTAGGAAGATAAGACTACAATCTTCAGTCTGCTTCCTTGCT
160214044 GCTCAGGGAG
Statistics
Matches: 278, Mismatches: 90, Indels: 54
0.66 0.21 0.13
Matches are distributed among these distances:
42 2 0.01
43 58 0.21
44 153 0.55
45 64 0.23
46 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.29
Consensus pattern (43 bp):
CTTAGGAAGATAAGACTACAATCTTCAGTCTGCTTCCTTGCTA
Found at i:160213759 original size:176 final size:176
Alignment explanation
Indices: 160213390--160214146 Score: 1034
Period size: 176 Copynumber: 4.3 Consensus size: 176
160213380 AACTTTAGGG
* ** * * * *
160213390 AGATAAGATTCGCCATCTTCGATCTGTTCCACTGCTATCTCAGGGAAATAAGATCTACAATCTTC
1 AGATAAGATTCGCCGTCTTCGATCTACTCCACTACT-GCTTAGGGAGATAAGATCTACAATCTTC
* * * * ** ** * *
160213455 ATTATGCTTCATTGCTACATCAGGAAGATAAGACTCCAATCTTTGGCCTACTCTTTTACTACCTC
65 AGTCTGCTTCCTTGCTACATCAGGAAGATAAGACTACAATCTTCAGCCTACTCCCTTGCT-GCTC
* * * *
160213520 AGGGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGAGA
129 AAGGAGATAAGGCTAGTGGCTAAAATCTGCTCTCCTGCTACCTCGGGA
*
160213568 AGATAAGATTCGCCGTCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCA
1 AGATAAGATTCGCCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCA
* *
160213633 GTCTGCTTCCTTGCTACATTAGGAAGATAAGACTACAATCTTCAGCCTACTCCCTTGCTGTTCAA
66 GTCTGCTTCCTTGCTACATCAGGAAGATAAGACTACAATCTTCAGCCTACTCCCTTGCTGCTCAA
*
160213698 GGAGATAAGGCTAGCGGCTAAAATCTGCTCTCCTGCTACCTCGGGA
131 GGAGATAAGGCTAGTGGCTAAAATCTGCTCTCCTGCTACCTCGGGA
*
160213744 AGATAAGATTCGCCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAAATCTACAATCTTCA
1 AGATAAGATTCGCCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCA
* * * * * * * *
160213809 GCCTACTTCCTTACTACATGAGGAAGATAAGACTACAGTCTTAAGCCTGCTCCTTTGCTGCTC-A
66 GTCTGCTTCCTTGCTACATCAGGAAGATAAGACTACAATCTTCAGCCTACTCCCTTGCTGCTCAA
*
160213873 GGAAAATAAGGCTAGTGGCTAAAATCTGCTC-CCTTGCTACCTCGGGA
131 GG-AGATAAGGCTAGTGGCTAAAATCTGCTCTCC-TGCTACCTCGGGA
* *
160213920 AGATAAGATTCGCCATCTTCTATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCA
1 AGATAAGATTCGCCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCA
* * * *
160213985 GTCTGATTCCTTGCTACATCAGAAAGATAAGACTACAATCTTCAGCCTGCTCCCTTGCTGCTCAG
66 GTCTGCTTCCTTGCTACATCAGGAAGATAAGACTACAATCTTCAGCCTACTCCCTTGCTGCTCAA
* * *
160214050 GGAGACAAGGCTAGTGGCTTAAATCTGCTCTCCTGCTACCGCAGGG-
131 GGAGATAAGGCTAGTGGCTAAAATCTGCTCTCCTGCTACCTC-GGGA
* *
160214096 AGATAAGATTCACCGTCTTCAATCTACTCCACTACTGCTTAGGGAGATAAG
1 AGATAAGATTCGCCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAG
160214147 GTCTGTAGTC
Statistics
Matches: 516, Mismatches: 58, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
175 5 0.01
176 398 0.77
177 82 0.16
178 31 0.06
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29
Consensus pattern (176 bp):
AGATAAGATTCGCCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCA
GTCTGCTTCCTTGCTACATCAGGAAGATAAGACTACAATCTTCAGCCTACTCCCTTGCTGCTCAA
GGAGATAAGGCTAGTGGCTAAAATCTGCTCTCCTGCTACCTCGGGA
Found at i:160220813 original size:40 final size:40
Alignment explanation
Indices: 160220758--160220952 Score: 336
Period size: 40 Copynumber: 4.9 Consensus size: 40
160220748 AAGTTCAGTA
* * *
160220758 TGTTAAATCCGGGCTAAGTCCCAAAGAGCATTTGTGCTGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
160220798 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
160220838 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
* * *
160220878 TGTTATATCCGGGCTAAGTCTCAAAGAGCATTCGTACTGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
160220918 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGT
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGT
160220953 TCCGGTGATA
Statistics
Matches: 147, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 147 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
Found at i:160221009 original size:43 final size:43
Alignment explanation
Indices: 160220948--160221047 Score: 164
Period size: 43 Copynumber: 2.3 Consensus size: 43
160220938 CCGAAGAGCA
*
160220948 TTCGTTCCGGTGATATGTATTCGGGTCTTCGTGCCTAGCAGGC
1 TTCGTGCCGGTGATATGTATTCGGGTCTTCGTGCCTAGCAGGC
*
160220991 TTCGTGCCGGTGATATGTATTCGTGTCTTCGTGCCTAGCAGGC
1 TTCGTGCCGGTGATATGTATTCGGGTCTTCGTGCCTAGCAGGC
**
160221034 TTAATGCCGGTGAT
1 TTCGTGCCGGTGAT
160221048 TCGAGTAAGG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.13, C:0.22, G:0.30, T:0.35
Consensus pattern (43 bp):
TTCGTGCCGGTGATATGTATTCGGGTCTTCGTGCCTAGCAGGC
Found at i:160226216 original size:39 final size:40
Alignment explanation
Indices: 160226142--160226262 Score: 226
Period size: 40 Copynumber: 3.0 Consensus size: 40
160226132 AAGTTCAGTA
160226142 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
160226182 TGTTATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
*
160226221 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCCGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
160226261 TG
1 TG
160226263 ATATGTATTC
Statistics
Matches: 79, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
39 39 0.49
40 40 0.51
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (40 bp):
TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
Found at i:160226312 original size:43 final size:43
Alignment explanation
Indices: 160226251--160226338 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
160226241 CCGAAGAGCA
*
160226251 TTCGTGCCGGTGATATGTATTCGGGTCTTCGTGCCTAGCAGGC
1 TTCGTGCCGGTGATATGTATTCCGGTCTTCGTGCCTAGCAGGC
160226294 TTCGTGCCGGTGATATGTATTCCGGTCTTCGTGCCTAGCAGGC
1 TTCGTGCCGGTGATATGTATTCCGGTCTTCGTGCCTAGCAGGC
160226337 TT
1 TT
160226339 AATACTGGTG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.11, C:0.24, G:0.31, T:0.34
Consensus pattern (43 bp):
TTCGTGCCGGTGATATGTATTCCGGTCTTCGTGCCTAGCAGGC
Found at i:160226349 original size:43 final size:43
Alignment explanation
Indices: 160226257--160226350 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
160226247 AGCATTCGTG
* ** *
160226257 CCGGTGATATGTATTCGGGTCTTCGTGCCTAGCAGGCTTCGTG
1 CCGGTGATATGTATTCCGGTCTTCGTGCCTAGCAGGCTTAATA
160226300 CCGGTGATATGTATTCCGGTCTTCGTGCCTAGCAGGCTTAATA
1 CCGGTGATATGTATTCCGGTCTTCGTGCCTAGCAGGCTTAATA
*
160226343 CTGGTGAT
1 CCGGTGAT
160226351 TCGAGCAAGG
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.15, C:0.22, G:0.30, T:0.33
Consensus pattern (43 bp):
CCGGTGATATGTATTCCGGTCTTCGTGCCTAGCAGGCTTAATA
Found at i:160228217 original size:93 final size:93
Alignment explanation
Indices: 160228105--160228276 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
160228095 CGCCCATAAG
* *
160228105 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
160228170 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
160228198 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
160228263 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
160228277 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:160228273 original size:46 final size:46
Alignment explanation
Indices: 160228098--160228273 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
160228088 TGTAACCCGC
* * *
160228098 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
160228144 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
160228194 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
160228237 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
160228274 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:160235772 original size:93 final size:93
Alignment explanation
Indices: 160235660--160235831 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
160235650 CGCCCATAAG
* *
160235660 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
160235725 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
160235753 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
160235818 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
160235832 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:160235828 original size:46 final size:46
Alignment explanation
Indices: 160235653--160235828 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
160235643 TGTAACCCGC
* * *
160235653 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
160235699 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
160235749 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
160235792 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
160235829 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:160238119 original size:35 final size:35
Alignment explanation
Indices: 160238054--160238233 Score: 189
Period size: 35 Copynumber: 5.1 Consensus size: 35
160238044 NNNNNACTTG
* * * *
160238054 TATGGCCAAATACACATGGTTCATTATATCATCACA
1 TATGGCCGAATATACA-AGTTCAATATATCATCACA
* *
160238090 TATGGCCGAATATACAAGTACAATATATCATCATA
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
* * *
160238125 TATGACCGAATATACAAGTTCAATAAAACATCACA
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
* * * * *
160238160 TATAGTCGAATATTCAAGTTTAATATAACATCACA
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
* * **
160238195 TGTGGCCAAATATACAAGTTCAATGCATCATCACA
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
160238230 TATG
1 TATG
160238234 TACATACCTA
Statistics
Matches: 117, Mismatches: 27, Indels: 1
0.81 0.19 0.01
Matches are distributed among these distances:
35 103 0.88
36 14 0.12
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (35 bp):
TATGGCCGAATATACAAGTTCAATATATCATCACA
Found at i:160246519 original size:40 final size:40
Alignment explanation
Indices: 160246460--160246601 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
160246450 AAATTGAATG
* * *
160246460 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
160246500 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
160246540 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
160246580 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
160246602 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:160246602 original size:40 final size:39
Alignment explanation
Indices: 160246499--160246627 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
160246489 TGCTGGAAAT
* * *
160246499 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
160246539 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
160246579 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
160246619 TATATCCGG
1 TATATCCGG
160246628 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:160254537 original size:40 final size:40
Alignment explanation
Indices: 160254471--160254637 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
160254461 AAATTGAATG
* * *
160254471 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
160254510 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
160254550 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
160254590 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
160254630 ATATCCGG
1 ATATCCGG
160254638 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:160256199 original size:34 final size:34
Alignment explanation
Indices: 160256161--160256235 Score: 123
Period size: 34 Copynumber: 2.2 Consensus size: 34
160256151 TCATTCAACT
160256161 TTTCATTTCCAAAATAACACTATCTCAATTATGC
1 TTTCATTTCCAAAATAACACTATCTCAATTATGC
* *
160256195 TTTCATTTCGAATATAACACTATCTCAATTATGC
1 TTTCATTTCCAAAATAACACTATCTCAATTATGC
*
160256229 TTACATT
1 TTTCATT
160256236 CAAACATATA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.04, T:0.41
Consensus pattern (34 bp):
TTTCATTTCCAAAATAACACTATCTCAATTATGC
Found at i:160256453 original size:35 final size:35
Alignment explanation
Indices: 160256388--160256567 Score: 198
Period size: 35 Copynumber: 5.1 Consensus size: 35
160256378 TACTTACTTG
* * *
160256388 TATGGCCAAATACACATAGTTCATTATATCATCACA
1 TATGGCCGAATATACA-AGTTCAATATATCATCACA
* *
160256424 TATGGCCGAATATACAAGTACAATATATCATCATA
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
* * * *
160256459 TATGACCGAATATACAAGTTCTATAAAACATCACA
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
*** * * *
160256494 TGCAGTCGAATATTCAAGTTCAATATAACATCACA
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
* *
160256529 TGTGGCCAAATATACAAGTTCAATATATCATCACA
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
160256564 TATG
1 TATG
160256568 TACATATCTA
Statistics
Matches: 118, Mismatches: 26, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
35 104 0.88
36 14 0.12
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (35 bp):
TATGGCCGAATATACAAGTTCAATATATCATCACA
Found at i:160266804 original size:12 final size:12
Alignment explanation
Indices: 160266767--160266805 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
160266757 TACACGCCCA
*
160266767 TGTGCCAAGCCG
1 TGTGCCAGGCCG
160266779 TGTGCCAGGCCG
1 TGTGCCAGGCCG
* *
160266791 TGTGCTAGGTCG
1 TGTGCCAGGCCG
160266803 TGT
1 TGT
160266806 AACAACCTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.10, C:0.26, G:0.38, T:0.26
Consensus pattern (12 bp):
TGTGCCAGGCCG
Found at i:160277705 original size:40 final size:40
Alignment explanation
Indices: 160277660--160277827 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
160277650 CGGAATACAA
160277660 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
160277700 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
160277740 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
160277780 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
160277820 CCGGATAT
1 CCGGATAT
160277828 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:160277800 original size:80 final size:80
Alignment explanation
Indices: 160277660--160277827 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
160277650 CGGAATACAA
* *
160277660 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
160277725 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
160277740 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
160277803 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
160277820 CCGGATAT
1 CCGGATAT
160277828 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:160280626 original size:14 final size:14
Alignment explanation
Indices: 160280609--160280635 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
160280599 ATTTTTATGG
160280609 AATGATTTCGTGAA
1 AATGATTTCGTGAA
160280623 AATGATTTCGTGA
1 AATGATTTCGTGA
160280636 CAATTTCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.37
Consensus pattern (14 bp):
AATGATTTCGTGAA
Found at i:160281766 original size:42 final size:41
Alignment explanation
Indices: 160281707--160281857 Score: 171
Period size: 42 Copynumber: 3.6 Consensus size: 41
160281697 GAGACTATGC
* *
160281707 GTAAGACCATATCTGGGATATGGCATCAATATGGGACTTCGA
1 GTAAGACCATATCTGGGATATGGCATCGATATGAGA-TTCGA
* * *
160281749 GTAAGACCATAACTGGGATATGGCATCGATGTGAGATTTCGT
1 GTAAGACCATATCTGGGATATGGCATCGATATGAGA-TTCGA
*
160281791 GTAAGACCATAGT-TGGGCTATTGGCATCGATATGAGATTAC-A
1 GTAAGACCATA-TCTGGGATA-TGGCATCGATATGAGATT-CGA
*
160281833 TGTAAGACCATATCTAGGATATGGC
1 -GTAAGACCATATCTGGGATATGGC
160281858 GTTGGTATGG
Statistics
Matches: 92, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
42 60 0.65
43 32 0.35
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (41 bp):
GTAAGACCATATCTGGGATATGGCATCGATATGAGATTCGA
Found at i:160288160 original size:49 final size:49
Alignment explanation
Indices: 160287886--160288158 Score: 443
Period size: 49 Copynumber: 5.7 Consensus size: 49
160287876 CCCTTCGGGA
* * * *
160287886 CTTATCACAT-T-TATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
160287933 CCTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
160287980 CTTA-CACATAT-TATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
160288026 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
160288075 CTTATCACATATATATACACTTTCACATTCATCACTTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
160288124 CTTATCACATATATATACACTTTCACATTCATCAC
1 CTTATCACATATATATACACTTTCACATTCATCAC
160288159 TTGGTCTTGG
Statistics
Matches: 212, Mismatches: 7, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
46 36 0.17
47 56 0.26
48 9 0.04
49 111 0.52
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:160291358 original size:24 final size:25
Alignment explanation
Indices: 160291323--160291370 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
160291313 AAGGATTTAC
160291323 ACACACACAGTGC-CTTAATCATTT
1 ACACACACAGTGCTCTTAATCATTT
* *
160291347 ACACACATAGTGCTCTTATTCATT
1 ACACACACAGTGCTCTTAATCATT
160291371 CGTTATTACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.33
Consensus pattern (25 bp):
ACACACACAGTGCTCTTAATCATTT
Found at i:160291597 original size:40 final size:40
Alignment explanation
Indices: 160291548--160291659 Score: 179
Period size: 40 Copynumber: 2.8 Consensus size: 40
160291538 CCAGCATGAT
* * *
160291548 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
160291588 TGCTCTTCGGAACTTAGTCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
160291628 TGCTCTTCGGAACTTAGTCCAGATACATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
160291660 CTCAATTCTC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:160293999 original size:49 final size:47
Alignment explanation
Indices: 160293778--160294096 Score: 406
Period size: 47 Copynumber: 6.7 Consensus size: 47
160293768 CCCTTCGGGA
* * * * * *
160293778 CTTATCACCTTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
160293825 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
160293872 CTTGTCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
160293919 CTTGTCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
160293966 CTTACCACATATATATACACGTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
160294015 CTTATCACATATATATACACTTTCACATTCATCAC-TTCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATT-GGCCATTAGGC
* *
160294064 CTTATCTCATATATATACACATTCACATTCATC
1 CTTA--TCACATATATACACTTTCACATTCATC
160294097 GCGTAAAATC
Statistics
Matches: 248, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
47 137 0.55
48 1 0.00
49 107 0.43
51 3 0.01
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:160304507 original size:29 final size:29
Alignment explanation
Indices: 160304417--160304576 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
160304407 ACTCGATTTC
* * **
160304417 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
160304446 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** * *
160304474 CGCACACCCAGTGCCGTAAATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
160304504 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
160304533 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
160304562 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
160304577 ATCTCGTCAC
Statistics
Matches: 110, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 107 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:160313543 original size:58 final size:58
Alignment explanation
Indices: 160313469--160313636 Score: 178
Period size: 58 Copynumber: 2.9 Consensus size: 58
160313459 TGCGGTGACG
* *
160313469 AGAT-TGGCACTAAGTGTGCATGCTGAAAATATATGGCACTAAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCGA-GCTCGAA
* * **
160313526 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGAGCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCGAGCTCGAA
* * ** * * * *
160313584 GGGTATGGCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAG
1 AGATATGGCACTAAGTGTGCATGCTGAAAA-TATACGGCACTAAGTGTGCGAG
160313637 TTTGATTATA
Statistics
Matches: 90, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
57 3 0.03
58 68 0.76
59 19 0.21
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCGAGCTCGAA
Found at i:160313604 original size:29 final size:29
Alignment explanation
Indices: 160313473--160313603 Score: 174
Period size: 29 Copynumber: 4.5 Consensus size: 29
160313463 GTGACGAGAT
*
160313473 TGGCACTAAGTGTGCATGCTGAAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
160313502 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
160313531 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
160313560 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
160313589 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
160313604 GGGTTTAAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
29 89 0.99
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:160313686 original size:29 final size:28
Alignment explanation
Indices: 160313620--160313687 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
160313610 AAAATTGTAC
* *
160313620 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGCGCGAGTTTGATCATAT
160313648 AGCACTAAGTGCGCGAG-TTGAATACATAT
1 AGCACTAAGTGCGCGAGTTTG-AT-CATAT
*
160313677 ATCACTAAGTG
1 AGCACTAAGTG
160313688 TGCGGATTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
27 3 0.09
28 18 0.51
29 14 0.40
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGCGCGAGTTTGATCATAT
Found at i:160315881 original size:29 final size:29
Alignment explanation
Indices: 160315791--160315950 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
160315781 ACTCGATTTC
* * **
160315791 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
160315820 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** * *
160315848 CGCACACCCAGTGCCGTAAATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
160315878 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
160315907 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
160315936 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
160315951 ATCTCGTCAC
Statistics
Matches: 110, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 107 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:160319627 original size:26 final size:28
Alignment explanation
Indices: 160319567--160319635 Score: 124
Period size: 26 Copynumber: 2.5 Consensus size: 28
160319557 AAATTTGTAC
160319567 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
160319595 AGCACTAAGTGTGCGAG-TTGAT-ATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
160319621 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
160319636 GACTCACTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 19 0.46
27 5 0.12
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:160324289 original size:219 final size:219
Alignment explanation
Indices: 160323910--160324356 Score: 718
Period size: 219 Copynumber: 2.0 Consensus size: 219
160323900 TCAACTGAAG
* * *
160323910 ACTTATTTGACTAAAGCCCAATTCTAGTGCAACCCGAATCTGGCAAAGAGTTTGTCATCTATAGT
1 ACTTATTTGACGAAAGCCCAATTCTAGTGCAACCCAAATCAGGCAAAGAGTTTGTCATCTATAGT
160323975 GACGCCTCCCTACTTGGGTTAGGTTGCGTATTGATACAAGAAGGTCGAGTTGTGACCTATGCGTC
66 GACGCCTCCCTACTTGGGTTAGGTTGCGTATTGATACAAGAAGGTCGAGTTGTGACCTATGCGTC
* * * *
160324040 GAGGCAATTAAAGCCACATGAGAAAAATTATCCGACCCATGGTCTCGAATTGGCTGCCATCGTAT
131 GAGACAATTAAAGCCACATGAGAAAAATTATCCGACCCATGATCTCGAACTAGCTGCCATCGTAT
*
160324105 TCGCCTT-AAAGATATGGCGACATT
196 TCGCCTTGAAA-ATATGGCGACACT
* * *
160324129 ACTTATTTGACGGAAGCTCCAATTTTAGTGCAGCCCAAATCAGGCAAAGAGTTTGTCATCTATAG
1 ACTTATTTGACGAAAGC-CCAATTCTAGTGCAACCCAAATCAGGCAAAGAGTTTGTCATCTATAG
* * *
160324194 TGACGCCTCCCTACTTGGGTTGGGTTGCGTATTGATGCAA-AAGGTCGAGTTGTGGCCTATGCGT
65 TGACGCCTCCCTACTTGGGTTAGGTTGCGTATTGATACAAGAAGGTCGAGTTGTGACCTATGCGT
160324258 CGAGACAATTAAAGCCACATGAGAAAAATTATCCGACCCATGATCTCGAACTAGCTGCCATCGTA
130 CGAGACAATTAAAGCCACATGAGAAAAATTATCCGACCCATGATCTCGAACTAGCTGCCATCGTA
*
160324323 TTCGCTTTGAAAATATGGCGACACT
195 TTCGCCTTGAAAATATGGCGACACT
*
160324348 ACCTATTTG
1 ACTTATTTG
160324357 GGGAGAAGTG
Statistics
Matches: 210, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
219 126 0.60
220 84 0.40
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (219 bp):
ACTTATTTGACGAAAGCCCAATTCTAGTGCAACCCAAATCAGGCAAAGAGTTTGTCATCTATAGT
GACGCCTCCCTACTTGGGTTAGGTTGCGTATTGATACAAGAAGGTCGAGTTGTGACCTATGCGTC
GAGACAATTAAAGCCACATGAGAAAAATTATCCGACCCATGATCTCGAACTAGCTGCCATCGTAT
TCGCCTTGAAAATATGGCGACACT
Found at i:160327616 original size:27 final size:28
Alignment explanation
Indices: 160327560--160327629 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
160327550 AAATTTGTAC
160327560 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
160327588 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
160327615 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
160327630 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:160327640 original size:27 final size:27
Alignment explanation
Indices: 160327560--160327641 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
160327550 AAATTTGTAC
* *
160327560 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
160327588 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
160327615 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
160327642 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:160337108 original size:40 final size:39
Alignment explanation
Indices: 160336943--160337126 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
160336933 AAATTGAATG
* * *
160336943 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
160336983 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
160337023 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
160337063 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
160337102 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
160337127 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:160337151 original size:80 final size:81
Alignment explanation
Indices: 160336983--160337171 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
160336973 GCTGGAAATT
* * * *
160336983 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
160337048 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
160337064 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
160337127 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
160337143 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
160337172 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:160339879 original size:43 final size:43
Alignment explanation
Indices: 160339817--160339969 Score: 200
Period size: 43 Copynumber: 3.6 Consensus size: 43
160339807 CTAAACTCAT
* * * * *
160339817 TCACCGACATT-TCGCCTGCTAGGCTTGAAGCCTGATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCTGATATTATC
* * *
160339859 TCACCGGCATTATAGCCTGCTAGGCTCAAAACCCGATATTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCTGATATTATC
* *
160339902 TCACCGGCATTATAACCTGCTAGGCCCGAAGCCTGATATTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCTGATATTATC
*
160339945 TCACCTGCATTATAGCCTGCTAGGC
1 TCACCGGCATTATAGCCTGCTAGGC
160339970 CCGTAGCCCG
Statistics
Matches: 95, Mismatches: 15, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
42 10 0.11
43 85 0.89
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCTGATATTATC
Found at i:160347422 original size:3 final size:3
Alignment explanation
Indices: 160347414--160347438 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
160347404 TGTTTATGAA
160347414 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
160347439 GTAATTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:160347427 original size:17 final size:18
Alignment explanation
Indices: 160347388--160347427 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
160347378 TGTATTATTG
*
160347388 GTATT-TGAAATTTTTAT
1 GTATTATGAAATTATTAT
160347405 GT-TTATGAAATTATTAT
1 GTATTATGAAATTATTAT
160347422 -TATTAT
1 GTATTAT
160347428 TATTATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (18 bp):
GTATTATGAAATTATTAT
Found at i:160353885 original size:37 final size:37
Alignment explanation
Indices: 160353844--160353948 Score: 122
Period size: 37 Copynumber: 2.8 Consensus size: 37
160353834 TCTTTTCGGT
* *
160353844 TGGATTAGCTCTTCGGAGCTAT-TGGTGTGTTATCAGG
1 TGGATTAGCTCTTAGGAGC-ATCTAGTGTGTTATCAGG
* * **
160353881 TGGATTGGCTCTTATGAGCATCTAGTGTGTTATTGGG
1 TGGATTAGCTCTTAGGAGCATCTAGTGTGTTATCAGG
* *
160353918 TGGATTAGCTCTTATGAGCATCTAGTCTGTT
1 TGGATTAGCTCTTAGGAGCATCTAGTGTGTT
160353949 TCGGTTGGAA
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
36 2 0.03
37 57 0.97
ACGTcount: A:0.17, C:0.13, G:0.30, T:0.40
Consensus pattern (37 bp):
TGGATTAGCTCTTAGGAGCATCTAGTGTGTTATCAGG
Found at i:160362815 original size:23 final size:23
Alignment explanation
Indices: 160362783--160362845 Score: 117
Period size: 23 Copynumber: 2.7 Consensus size: 23
160362773 ATACATGCCA
*
160362783 TTATAGCAAAATGAGATGTCTAT
1 TTATACCAAAATGAGATGTCTAT
160362806 TTATACCAAAATGAGATGTCTAT
1 TTATACCAAAATGAGATGTCTAT
160362829 TTATACCAAAATGAGAT
1 TTATACCAAAATGAGAT
160362846 AGTGGATACT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.33
Consensus pattern (23 bp):
TTATACCAAAATGAGATGTCTAT
Found at i:160365681 original size:80 final size:80
Alignment explanation
Indices: 160365580--160365745 Score: 219
Period size: 80 Copynumber: 2.1 Consensus size: 80
160365570 TGGAAATTAT
* * *
160365580 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-CG-ACTACATCCGGGCTAAGACCTGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGTACT--ATCCGGGCTAAGACCCGAAGGCA
*
160365643 TTCGTGCAAGTTGTTAA
64 TTCGTGCAAGTGGTTAA
* * *
160365660 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGTACTATCCGGGCTAAGACCCGAAGGCATT
* *
160365725 CGTGCATGTGGTTAT
66 CGTGCAAGTGGTTAA
160365740 ATCCGG
1 ATCCGG
160365746 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
80 71 0.95
81 2 0.03
82 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGTACTATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:160365743 original size:40 final size:40
Alignment explanation
Indices: 160365576--160365745 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
160365566 ATGCTGGAAA
* * * *
160365576 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGA
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGG
* * * *
160365616 CTACATCCGGGCTAAGACCTGAAGGCATTCGTGCAAGTTG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGG
* * * *
160365656 TTAAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGG
* *
160365696 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGG
160365736 TTATATCCGG
1 TTATATCCGG
160365746 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 3 0.03
40 105 0.97
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGG
Found at i:160373780 original size:78 final size:79
Alignment explanation
Indices: 160373689--160373837 Score: 198
Period size: 78 Copynumber: 1.9 Consensus size: 79
160373679 TCGGTTAAGA
* *
160373689 CCGAAGGCAATTGTGCTAG-CG-ACTACATCCGGGCT-AGACCTGAAGGCATTCGTGCAAGTTGT
1 CCGAAGGCAATTGTGC-AGTCGTACT--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGT
160373751 TAAATCCGGGCTAATAC
63 TAAATCCGGGCTAATAC
* * *
160373768 CCGAAGGC-ATTGTGCAGTCGTTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAT
1 CCGAAGGCAATTGTGCAGTCGTACTATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAA
160373832 ATCCGG
66 ATCCGG
160373838 TTGTATTCCG
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
77 11 0.18
78 41 0.66
79 10 0.16
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCAGTCGTACTATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAA
ATCCGGGCTAATAC
Found at i:160373802 original size:38 final size:39
Alignment explanation
Indices: 160373715--160373837 Score: 160
Period size: 38 Copynumber: 3.2 Consensus size: 39
160373705 TAGCGACTAC
* * *
160373715 ATCCGGGCT-AGACCTGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTCGTTAT
* *
160373754 ATCCGGGCTAATACCCGAAGGCATT-GTGCAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTCGTTAT
*
160373792 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTCGTTAT
160373832 ATCCGG
1 ATCCGG
160373838 TTGTATTCCG
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
38 30 0.41
39 18 0.25
40 25 0.34
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTCGTTAT
Found at i:160379687 original size:68 final size:72
Alignment explanation
Indices: 160379615--160379814 Score: 261
Period size: 73 Copynumber: 2.8 Consensus size: 72
160379605 ACACCCTGTA
* * * *
160379615 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACA-A-GAGAGCTACGTGAA
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACACATGAGAGCTACGTGAA
160379675 AGATAAAT
65 AGATAAAT
*
160379683 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACACATGAGAGCTACGTGAA
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACACATGAGAGCTACGTGAA
*
160379748 AGGTAAAT
65 AGATAAAT
*
160379756 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACA-A-GAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACACATGAGAGCTACG
160379815 AGACAAATCG
Statistics
Matches: 120, Mismatches: 6, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
68 24 0.20
69 3 0.03
70 1 0.01
71 21 0.17
72 2 0.02
73 69 0.57
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.20
Consensus pattern (72 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACACATGAGAGCTACGTGAAA
GATAAAT
Found at i:160379714 original size:40 final size:40
Alignment explanation
Indices: 160379670--160379787 Score: 90
Period size: 40 Copynumber: 3.1 Consensus size: 40
160379660 AGAGAGCTAC
160379670 GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA
1 GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA
* * * * * * * *
160379710 GTGAAGGACACCATGTAG--A---CACAT--GAGA-GCTAC
1 GTGAAAGATA-AATGTAGCTAGGTCGCATGCGTGATTCCAA
*
160379743 GTGAAAGGTAAATGTAGCTAGGTCGCATGCGTGATTCCAA
1 GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA
160379783 GTGAA
1 GTGAA
160379788 GGACACCATG
Statistics
Matches: 52, Mismatches: 17, Indels: 18
0.60 0.20 0.21
Matches are distributed among these distances:
32 6 0.12
33 9 0.17
34 4 0.08
36 4 0.08
37 4 0.08
39 4 0.08
40 15 0.29
41 6 0.12
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (40 bp):
GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA
Found at i:160379726 original size:41 final size:41
Alignment explanation
Indices: 160379681--160379800 Score: 100
Period size: 41 Copynumber: 3.1 Consensus size: 41
160379671 TGAAAGATAA
160379681 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
160379722 ATGTAG--A---CACAT--GAGA-GCTACGTGAAAGGTA-A--
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTG-AAGG-ACACC
160379754 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
160379795 ATGTAG
1 ATGTAG
160379801 ACAAGAGAGC
Statistics
Matches: 56, Mismatches: 10, Indels: 26
0.61 0.11 0.28
Matches are distributed among these distances:
32 6 0.11
33 5 0.09
34 9 0.16
35 1 0.02
36 4 0.07
37 4 0.07
38 1 0.02
39 9 0.16
40 5 0.09
41 12 0.21
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:160379755 original size:73 final size:71
Alignment explanation
Indices: 160379649--160379814 Score: 305
Period size: 73 Copynumber: 2.3 Consensus size: 71
160379639 GAGATGTATC
160379649 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
160379714 AGGACA
66 AGGACA
*
160379720 CCATGTAGACACATGAGAGCTACGTGAAAGGTAAATGTAGCTAGGTCGCATGCGTGATTCCAAGT
1 CCATGTAGACA-A-GAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGT
160379785 GAAGGACA
64 GAAGGACA
160379793 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
160379815 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
71 21 0.23
72 2 0.02
73 69 0.75
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:160379851 original size:66 final size:70
Alignment explanation
Indices: 160379649--160379837 Score: 230
Period size: 73 Copynumber: 2.7 Consensus size: 70
160379639 GAGATGTATC
*
160379649 CCATGTAGACA-A-GAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGT
1 CCATGTAGACACATGAGAGCTACG-G-AAGACAAATG-AGCTAGGTCGCATGCGTGATTCCAAGT
160379712 GAAGGACA
63 GAAGGACA
**
160379720 CCATGTAGACACATGAGAGCTACGTGAAAGGTAAATGTAGCTAGGTCGCATGCGTGATTCCAAGT
1 CCATGTAGACACATGAGAGCTACG-G-AAGACAAATG-AGCTAGGTCGCATGCGTGATTCCAAGT
160379785 GAAGGACA
63 GAAGGACA
*
160379793 CCATGTAGACA-A-GAGAGCTAC-G-AGACAAATCG-GTTAGGTCGCATG
1 CCATGTAGACACATGAGAGCTACGGAAGACAAAT-GAGCTAGGTCGCATG
160379838 AGTGGTACTA
Statistics
Matches: 111, Mismatches: 4, Indels: 11
0.88 0.03 0.09
Matches are distributed among these distances:
66 12 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 20 0.18
72 2 0.02
73 69 0.62
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.20
Consensus pattern (70 bp):
CCATGTAGACACATGAGAGCTACGGAAGACAAATGAGCTAGGTCGCATGCGTGATTCCAAGTGAA
GGACA
Found at i:160384184 original size:19 final size:19
Alignment explanation
Indices: 160384160--160384198 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
160384150 CAAACGGTTT
160384160 ACACATAGCAACTTTGGTC
1 ACACATAGCAACTTTGGTC
160384179 ACACATAGCAACTTTGGTC
1 ACACATAGCAACTTTGGTC
160384198 A
1 A
160384199 GGATACATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (19 bp):
ACACATAGCAACTTTGGTC
Found at i:160387965 original size:15 final size:17
Alignment explanation
Indices: 160387941--160387974 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
160387931 GCTAAGGACT
160387941 AAATTGAAAAG-TGATA
1 AAATTGAAAAGATGATA
160387957 AAATT-AAAAGATGATA
1 AAATTGAAAAGATGATA
160387973 AA
1 AA
160387975 TAATTAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.24
Consensus pattern (17 bp):
AAATTGAAAAGATGATA
Found at i:160392577 original size:49 final size:47
Alignment explanation
Indices: 160392460--160392776 Score: 433
Period size: 47 Copynumber: 6.7 Consensus size: 47
160392450 GATTTTACGC
* *
160392460 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
160392507 GATGAATGTGAAGGTGTATATATGTGATAAGG-CTGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCT-AATGGCCAATGT
*
160392554 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCTAATGGCCAATGT
*
160392603 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCTAATGGCCA-ATGT
*
160392652 GATGAATGTGAAGGTGTATATATGTGATAAGG-CTGAATAGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCT-AATGGCCAATGT
* * * * *
160392699 GATGAATGTGAAGGTGTATATATGTGACAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
* * *
160392746 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAGGTGTATATATGTGATAAG
160392777 TCCCGAAGGG
Statistics
Matches: 244, Mismatches: 18, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
46 4 0.02
47 143 0.59
48 10 0.04
49 85 0.35
50 2 0.01
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
Found at i:160392584 original size:96 final size:93
Alignment explanation
Indices: 160392460--160392776 Score: 424
Period size: 96 Copynumber: 3.3 Consensus size: 93
160392450 GATTTTACGC
160392460 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
160392525 TATATGTGATAAGGCTGAATGGCCAATGT
65 TATATGTGATAAGGCTGAATGGCCAATGT
160392554 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTG-AA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
*
160392619 TATATATATGTGATAAGGCCT-AATGG-CAGATGT
61 TGTATATATGTGATAAGG-CTGAATGGCCA-ATGT
* *
160392652 GATGAATGTGAAGGTGTATATATGTGATAAGG-CTGAATAGCCAATGTGATGAATGTGAAGGTGT
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAGGTGT
* * * * *
160392716 ATATATGTGACAGGGCCGAGTGGCCAACGT
64 ATATATGTGATAAGGCTGAATGGCCAATGT
* *
160392746 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTG-AAGTGTATATATGTGATAAG
160392777 TCCCGAAGGG
Statistics
Matches: 201, Mismatches: 12, Indels: 20
0.86 0.05 0.09
Matches are distributed among these distances:
93 1 0.00
94 59 0.29
95 11 0.05
96 84 0.42
97 7 0.03
98 37 0.18
99 2 0.01
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.29
Consensus pattern (93 bp):
GATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTAT
ATATGTGATAAGGCTGAATGGCCAATGT
Found at i:160394569 original size:42 final size:41
Alignment explanation
Indices: 160394514--160394602 Score: 108
Period size: 42 Copynumber: 2.2 Consensus size: 41
160394504 GACAAACGGT
* * *
160394514 CGTGTGTCATGACCGTATGTGACACACGGCTTGGTACATCGG
1 CGTGTATCATGACCATATGTGACACACGGCCTGGTACAT-GG
* * *
160394556 CGTGTATCTTGACCATGTGTGACACATGGCCTGGTACATGG
1 CGTGTATCATGACCATATGTGACACACGGCCTGGTACATGG
160394597 -GTGTAT
1 CGTGTAT
160394603 GATTATTCTG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
40 6 0.15
41 2 0.05
42 33 0.80
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.29
Consensus pattern (41 bp):
CGTGTATCATGACCATATGTGACACACGGCCTGGTACATGG
Found at i:160395991 original size:3 final size:3
Alignment explanation
Indices: 160395983--160396023 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
160395973 AGTTTGTGTG
160395983 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
160396024 GCAATGTCAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:160396627 original size:48 final size:48
Alignment explanation
Indices: 160396452--160396625 Score: 260
Period size: 48 Copynumber: 3.6 Consensus size: 48
160396442 ATGAGATCTC
*
160396452 GTGTAAGACCATGCTTGGGACATGGCATCGACGTTGATATGTGTGCCA
1 GTGTAAGACCATGTTTGGGACATGGCATCGACGTTGATATGTGTGCCA
* *
160396500 ATGTAAGACCATGTTTGGGACATGGCATCAACGTTGATATGTGTGCCA
1 GTGTAAGACCATGTTTGGGACATGGCATCGACGTTGATATGTGTGCCA
* * * *
160396548 GTGTAAAACCATGTTTGGGACATGGCATCGGCGATGATATGTGTGCTA
1 GTGTAAGACCATGTTTGGGACATGGCATCGACGTTGATATGTGTGCCA
*
160396596 GTGTAAGACCATGTCTAGGG-CATGGCATCG
1 GTGTAAGACCATGT-TTGGGACATGGCATCG
160396626 GCACCGATAT
Statistics
Matches: 114, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
48 110 0.96
49 4 0.04
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (48 bp):
GTGTAAGACCATGTTTGGGACATGGCATCGACGTTGATATGTGTGCCA
Found at i:160396655 original size:96 final size:96
Alignment explanation
Indices: 160396442--160396655 Score: 238
Period size: 96 Copynumber: 2.2 Consensus size: 96
160396432 ACCATGGTTA
*
160396442 ATGAGATCTCGTGTAAGACCATGCTTGGGACATGGCATCGACGTTGATATGTGTGCCAATGTAAG
1 ATGAGATCTCGTGTAAGACCATGCTTGGGACATGGCATCGACGATGATATGTGTGCCAATGTAAG
* ***
160396507 ACCATGTTTGGGACATGGCATCAACGTTGAT
66 ACCATGTTAGGGACATGGCATCAACACCGAT
* * * * * *
160396538 ATGTG-TGC-CAGTGTAAAACCATGTTTGGGACATGGCATCGGCGATGATATGTGTGCTAGTGTA
1 ATGAGAT-CTC-GTGTAAGACCATGCTTGGGACATGGCATCGACGATGATATGTGTGCCAATGTA
**
160396601 AGACCATGTCTAGGG-CATGGCATCGGCACCGAT
64 AGACCATGT-TAGGGACATGGCATCAACACCGAT
*
160396634 ATGAGA-CTTCGTATAAGACCAT
1 ATGAGATC-TCGTGTAAGACCAT
160396656 ATCTGGGATA
Statistics
Matches: 96, Mismatches: 16, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
95 3 0.03
96 88 0.92
97 5 0.05
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (96 bp):
ATGAGATCTCGTGTAAGACCATGCTTGGGACATGGCATCGACGATGATATGTGTGCCAATGTAAG
ACCATGTTAGGGACATGGCATCAACACCGAT
Found at i:160402623 original size:13 final size:13
Alignment explanation
Indices: 160402605--160402629 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
160402595 CAATCTCTTT
160402605 TGGGTATTCTATA
1 TGGGTATTCTATA
160402618 TGGGTATTCTAT
1 TGGGTATTCTAT
160402630 TTGTACTATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.08, G:0.24, T:0.48
Consensus pattern (13 bp):
TGGGTATTCTATA
Found at i:160404101 original size:28 final size:26
Alignment explanation
Indices: 160404046--160404158 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 26
160404036 AGCATGGTTG
* * *
160404046 CCAGAACTGATAATGTGACAGAATCA
1 CCAGAACAGATAATGTGGCAGAACCA
160404072 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAACCA
* *
160404100 CCAGAACAGATATATGTGGCAGAGCGA
1 CCAGAACAGATA-ATGTGGCAGAACCA
* * *
160404127 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAACCA
160404155 CCAG
1 CCAG
160404159 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
26 6 0.08
27 36 0.49
28 32 0.43
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAACCA
Found at i:160404132 original size:55 final size:54
Alignment explanation
Indices: 160404046--160404158 Score: 131
Period size: 55 Copynumber: 2.1 Consensus size: 54
160404036 AGCATGGTTG
* *
160404046 CCAGAACTGATAATGTGACAGAATCACCAGATACAGATAA-TCGTGGCAGAACCA
1 CCAGAACAGATAATGTGACAGAAGCACCAGAT-CAGATAATTCGTGGCAGAACCA
* * * *
160404100 CCAGAACAGATATATGTGGCAG-AGCGACCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAAGC-ACCAGATCAGATAATTCGTGGCAGAACCA
160404155 CCAG
1 CCAG
160404159 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 20 0.40
55 30 0.60
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAAGCACCAGATCAGATAATTCGTGGCAGAACCA
Found at i:160407509 original size:66 final size:68
Alignment explanation
Indices: 160407433--160407619 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
160407423 TAGTACCACT
*
160407433 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
160407495 CACG
65 CACG
160407499 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
160407564 ATCACG
63 ATCACG
160407570 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
160407620 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:160407544 original size:71 final size:71
Alignment explanation
Indices: 160407456--160407619 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
160407446 CGATTTGTCT
160407456 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
160407521 CTTTCA
66 CTTTCA
160407527 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
160407592 CTTTCA
66 CTTTCA
160407598 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
160407620 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:160407657 original size:71 final size:70
Alignment explanation
Indices: 160407456--160407653 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
160407446 CGATTTGTCT
* * *
160407456 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
160407521 CTTTCA
65 CTTTCA
* * *
160407527 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
160407592 CTTTCA
65 CTTTCA
* *
160407598 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
160407654 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:160415066 original size:66 final size:68
Alignment explanation
Indices: 160414990--160415176 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
160414980 TAGTACCACT
*
160414990 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
160415052 CACG
65 CACG
160415056 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
160415121 ATCACG
63 ATCACG
160415127 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
160415177 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:160415101 original size:71 final size:71
Alignment explanation
Indices: 160415013--160415176 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
160415003 CGATTTGTCT
160415013 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
160415078 CTTTCA
66 CTTTCA
160415084 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
160415149 CTTTCA
66 CTTTCA
160415155 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
160415177 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:160417719 original size:29 final size:29
Alignment explanation
Indices: 160417686--160417845 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
160417676 GTGACGAGAT
160417686 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
160417715 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
160417744 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
160417773 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
160417802 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
160417831 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
160417846 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:160422716 original size:40 final size:40
Alignment explanation
Indices: 160422667--160422874 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
160422657 TCTTCGGAAT
* *
160422667 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
160422706 TTAACCCGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * * *
160422746 TTAGCCCGGATATGACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
160422786 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
** * *
160422826 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
160422866 TTAGCCCGG
1 TTAGCCCGG
160422875 GTATCATTCA
Statistics
Matches: 143, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 5 0.03
40 136 0.95
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:160430805 original size:40 final size:40
Alignment explanation
Indices: 160430756--160431003 Score: 257
Period size: 40 Copynumber: 6.2 Consensus size: 40
160430746 TCTTCGGAAT
* *
160430756 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** * *
160430795 TTAACCCGGAT-TTGGTATCTTGAACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * * *
160430835 TTAGCCCGGATATGACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * * *
160430875 TTAGCCCGGATATGACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
160430915 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
** * *
160430955 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
160430995 TTAGCCCGG
1 TTAGCCCGG
160431004 GTATCATTCA
Statistics
Matches: 181, Mismatches: 25, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
39 5 0.03
40 174 0.96
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:160433537 original size:39 final size:39
Alignment explanation
Indices: 160433490--160433673 Score: 242
Period size: 39 Copynumber: 4.7 Consensus size: 39
160433480 AATGTTCGAG
160433490 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
160433529 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
160433568 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
160433607 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
160433647 CCATAACCGGGCTATGTCCCGAAGGCA
1 TGATATCCGGGCTAAG-CCCGAAGGCA
160433674 TTTGAACGAG
Statistics
Matches: 126, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:160443263 original size:49 final size:47
Alignment explanation
Indices: 160443106--160443326 Score: 190
Period size: 46 Copynumber: 4.7 Consensus size: 47
160443096 ATTGAGACGA
* *
160443106 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA--GAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCT-GATCGAT
* *
160443150 GTCAGCCATTGTAAGA-CATGTCTGGGACAT-GCATCGA-CT-ATGAGAT
1 G--AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTGAT-CGAT
* * * *
160443196 GTGTCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCT-GA--TCGAT
* * *
160443246 -AGCCAGTGTAAGACCATGTCTAGGACTTGGCATCGACCTGATGGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTGATCGAT
* * *
160443292 GAGCCAATGTAAAACCATGCCTGGGACATGGCATC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
160443327 AGCATTATAC
Statistics
Matches: 143, Mismatches: 21, Indels: 23
0.76 0.11 0.12
Matches are distributed among these distances:
43 1 0.01
44 11 0.08
45 16 0.11
46 44 0.31
47 31 0.22
48 2 0.01
49 34 0.24
50 3 0.02
51 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTGATCGAT
Found at i:160443316 original size:96 final size:92
Alignment explanation
Indices: 160443120--160443326 Score: 240
Period size: 96 Copynumber: 2.2 Consensus size: 92
160443110 TAGTGTAAGA
* *
160443120 CATGTCTGGGACAT-GCATCGGCCTCGAGATGTCAGCCATTGTAAGACATGTCTGGGACATGCAT
1 CATGTCTGGGACATGGCATCGGCCTCGAGATGTCAGCCAGTGTAAGACATGTCTAGGACATGCAT
* * * *
160443184 CGACTATGAGATGTGTCAGTGTAAGAC
66 CGACTATGAGATGAGCCAATGTAAAAC
* ** *
160443211 CATGTCTGGGACATGGCGTCGGCCTCGATTTCGAT-AGCCAGTGTAAGACCATGTCTAGGACTTG
1 CATGTCTGGGACATGGCATCGGCCTCGAGAT-G-TCAGCCAGTGTAAGA-CATGTCTAGGACAT-
160443275 GCATCGACCTGATG-GATGAGCCAATGTAAAAC
62 GCATCGA-CT-ATGAGATGAGCCAATGTAAAAC
*
160443307 CATGCCTGGGACATGGCATC
1 CATGTCTGGGACATGGCATC
160443327 AGCATTATAC
Statistics
Matches: 97, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
91 14 0.14
92 13 0.13
93 13 0.13
94 13 0.13
95 7 0.07
96 34 0.35
97 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.24
Consensus pattern (92 bp):
CATGTCTGGGACATGGCATCGGCCTCGAGATGTCAGCCAGTGTAAGACATGTCTAGGACATGCAT
CGACTATGAGATGAGCCAATGTAAAAC
Found at i:160446896 original size:41 final size:41
Alignment explanation
Indices: 160446851--160446968 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
160446841 TGAAAGATAA
160446851 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
160446892 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
160446922 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
160446963 ATGTAG
1 ATGTAG
160446969 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:160446907 original size:71 final size:71
Alignment explanation
Indices: 160446819--160446982 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
160446809 GAGATGTATC
160446819 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
160446884 AGGACA
66 AGGACA
160446890 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
160446955 AGGACA
66 AGGACA
160446961 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
160446983 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:160453334 original size:29 final size:29
Alignment explanation
Indices: 160453301--160453374 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
160453291 GTGACGAGAT
160453301 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
160453330 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
160453359 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
160453375 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:160453390 original size:29 final size:28
Alignment explanation
Indices: 160453358--160453432 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
160453348 CTGGAAATAT
* *
160453358 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
160453387 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
160453415 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
160453433 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:160453401 original size:58 final size:57
Alignment explanation
Indices: 160453301--160453432 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
160453291 GTGACGAGAT
* * * * * *
160453301 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
160453359 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
160453416 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
160453433 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:160461209 original size:29 final size:29
Alignment explanation
Indices: 160461176--160461249 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
160461166 GTGACGAGAT
160461176 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
160461205 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
160461234 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
160461250 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:160461265 original size:29 final size:28
Alignment explanation
Indices: 160461233--160461307 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
160461223 CTGGAAATAT
* *
160461233 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
160461262 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
160461290 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
160461308 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:160461276 original size:58 final size:57
Alignment explanation
Indices: 160461176--160461307 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
160461166 GTGACGAGAT
* * * * * *
160461176 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
160461234 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
160461291 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
160461308 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:160464206 original size:29 final size:28
Alignment explanation
Indices: 160464172--160464274 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
160464162 TACTCAATCA
*
160464172 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
160464201 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
160464230 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
160464259 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
160464275 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:160471840 original size:24 final size:24
Alignment explanation
Indices: 160471524--160471832 Score: 564
Period size: 24 Copynumber: 12.9 Consensus size: 24
160471514 GCAAAGACCA
160471524 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
160471548 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
160471572 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
160471596 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
160471620 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
160471644 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
160471668 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
160471692 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
160471716 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
160471740 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
*
160471764 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
**
160471788 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTCAC
*
160471812 TATAGCACTATGTGTGCGATT
1 TATGGCACTATGTGTGCGATT
160471833 TGCTATAGTC
Statistics
Matches: 280, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 280 1.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTCAC
Found at i:160477458 original size:124 final size:124
Alignment explanation
Indices: 160477236--160477460 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
160477226 GAATTATGTG
* * * * * * *
160477236 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
160477301 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
160477360 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
160477425 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
160477461 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:160477582 original size:40 final size:40
Alignment explanation
Indices: 160477455--160477584 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
160477445 TTGCTGGAAA
* * *
160477455 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
160477495 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
160477535 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
160477575 TTATATCCGG
1 TTATATCCGG
160477585 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:160480012 original size:40 final size:40
Alignment explanation
Indices: 160479945--160480121 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
160479935 ACCCAAGTAT
*
160479945 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
160479984 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATAC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * * *
160480024 GTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * *
160480064 CTTCGGGACATAGCCCGAATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
160480104 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
160480122 TTATCATCCG
Statistics
Matches: 114, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 98 0.86
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:160487293 original size:40 final size:40
Alignment explanation
Indices: 160487226--160487402 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
160487216 ACCCAAGTAT
*
160487226 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
160487265 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
160487305 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
160487345 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
160487385 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
160487403 TTATCATCCG
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 104 0.87
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:160489840 original size:27 final size:27
Alignment explanation
Indices: 160489811--160489983 Score: 215
Period size: 27 Copynumber: 6.4 Consensus size: 27
160489801 GGGGCAAAAT
*
160489811 GGTAATTTTACCCTACAAGGGTATCTT-
1 GGTAATTCTACCCTACAAGGGTAT-TTC
* *
160489838 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
160489865 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
160489892 GGCAATTCTATCCTAC-AGTGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
* *
160489919 GGTAAGTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
160489946 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
160489973 GGTAATTCTAC
1 GGTAATTCTAC
160489984 AACTTATCCA
Statistics
Matches: 126, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.03
27 121 0.96
28 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:160489883 original size:54 final size:54
Alignment explanation
Indices: 160489811--160489983 Score: 251
Period size: 54 Copynumber: 3.2 Consensus size: 54
160489801 GGGGCAAAAT
*
160489811 GGTAATTTTACCCTACAAGGGTATCTT-GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTAT-TTCGGTAATTCTACCTTACAGGGGTATTTC
* * *
160489865 GGTATTTCTACCCTACAAGGGTATTTCGGCAATTCTATCC-TACAGTGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTA-CCTTACAGGGGTATTTC
* * *
160489919 GGTAAGTCTACCCTACAGGGGTATTTCGATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTC
160489973 GGTAATTCTAC
1 GGTAATTCTAC
160489984 AACTTATCCA
Statistics
Matches: 105, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
53 4 0.04
54 99 0.94
55 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTC
Found at i:160495500 original size:40 final size:39
Alignment explanation
Indices: 160495426--160495604 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 39
160495416 GCTACTCGTT
* *
160495426 CAAATACCTTCGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATT-TAGTAACTCGCA
*
160495465 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
160495505 C--ATGCCTTCGG-CTTAGCCC-GA-TTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
160495539 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
160495580 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
160495605 CATCATTCGA
Statistics
Matches: 122, Mismatches: 8, Indels: 19
0.82 0.05 0.13
Matches are distributed among these distances:
34 14 0.11
35 2 0.02
36 17 0.14
37 2 0.02
38 15 0.12
39 12 0.10
40 47 0.39
41 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:160495539 original size:74 final size:78
Alignment explanation
Indices: 160495453--160495602 Score: 211
Period size: 74 Copynumber: 2.0 Consensus size: 78
160495443 AGCCCGGTTA
* *
160495453 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC-ATGCCTTC-
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATTTAGTAACTTAGCACAAAGCCTTCG
160495514 GG-CTTAGCCCGAT
65 GGACTTAGCCCGAT
** *
160495527 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATTTAGTAACTTAGCACAAAGCCTTCGG
160495592 GACTTAGCCCG
66 GACTTAGCCCG
160495603 GACATCATTC
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
73 3 0.05
74 40 0.61
75 5 0.08
76 7 0.11
77 2 0.03
78 9 0.14
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.26
Consensus pattern (78 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATTTAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCCCGAT
Found at i:160503978 original size:39 final size:39
Alignment explanation
Indices: 160503837--160503981 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 39
160503827 GTATCCGGGC
* * **
160503837 TAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTCCTAAATCC-GGT
* * * *
160503878 CAATTCCCGAAGGCATTTGTGTGAGTTCCTAAATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTCCTAAATCCGG-T
*
160503918 TAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAATCCGGT
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTCCTAAATCCGGT
160503957 TAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCGAG
160503982 CTATTATAAC
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
38 1 0.01
39 25 0.28
40 43 0.49
41 19 0.22
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (39 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTCCTAAATCCGGT
Found at i:160504007 original size:79 final size:80
Alignment explanation
Indices: 160503829--160504022 Score: 214
Period size: 79 Copynumber: 2.4 Consensus size: 80
160503819 TTCGAATGGT
* * *
160503829 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGC-GAGTGACCAAATCCGGGTCAAGTCCCGAAGGCAT
* * *
160503894 TTGTGTGAGTTCCTAA
65 TTGTGCGAGCTACTAA
* * ** *
160503910 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAATCC-GGTTAAGTCCCGAAGGCAT
1 ATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCGAGTGACCAAATCCGGGTCAAGTCCCGAAGGCAT
*
160503973 TTGTGCGAGCTATTATA
65 TTGTGCGAGCTACTA-A
* *
160503990 A-CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGT
160504023 CGCTATATCC
Statistics
Matches: 94, Mismatches: 16, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
78 1 0.01
79 54 0.57
80 12 0.13
81 26 0.28
82 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTGACCAAATCCGGGTCAAGTCCCGAAGGCATT
TGTGCGAGCTACTAA
Found at i:160516956 original size:26 final size:26
Alignment explanation
Indices: 160516920--160517003 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
160516910 CATGTAATTC
160516920 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
160516946 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
160516972 TTATCATGGAACATTTACCCAACCTA
1 TTATCATGAAACATTTACCTAACCCA
160516998 TTATCA
1 TTATCA
160517004 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:160522774 original size:26 final size:26
Alignment explanation
Indices: 160522736--160522845 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
160522726 CATGTAATTC
160522736 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
160522762 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
160522788 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
160522814 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
160522840 TTATCA
1 TTATCA
160522846 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:160533693 original size:10 final size:10
Alignment explanation
Indices: 160533670--160533706 Score: 56
Period size: 10 Copynumber: 3.5 Consensus size: 10
160533660 AAGGCATCTT
160533670 AAAAAAAAAG
1 AAAAAAAAAG
160533680 AGAAAAGAAAAG
1 A-AAAA-AAAAG
160533692 AAAAAAAAAG
1 AAAAAAAAAG
160533702 AAAAA
1 AAAAA
160533707 GAGAGGGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 11 0.44
11 8 0.32
12 6 0.24
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:160533979 original size:90 final size:84
Alignment explanation
Indices: 160533884--160534157 Score: 350
Period size: 84 Copynumber: 3.1 Consensus size: 84
160533874 ATCTTTCAAA
* * *
160533884 AAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCAGGTCACACGCTAAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--GCACGCTGAGGTATTTTCAATT
* *
160533949 TCCGTTTTTTCAATTTATGCTTTT
64 TCTG-TTTTTCAATTT-TGC-CTT
160533973 CAAAAATCAACTCATATTGCGAGAGGTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAT
1 -AAAAATCAACTCATA-T--------TGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAT
160534038 TTTCAATTTCTGTTTTTCAATTTTGCCTT
56 TTTCAATTTCTGTTTTTCAATTTTGCCTT
160534067 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
160534132 TGTTTTTCAATTTTTGCCTT
66 TGTTTTTCAA-TTTTGCCTT
*
160534152 ACAAAT
1 AAAAAT
160534158 TCTGCTTTTC
Statistics
Matches: 168, Mismatches: 6, Indels: 25
0.84 0.03 0.13
Matches are distributed among these distances:
84 59 0.35
85 14 0.08
90 15 0.09
91 1 0.01
92 1 0.01
93 15 0.09
94 2 0.01
95 3 0.02
96 11 0.07
97 23 0.14
99 24 0.14
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (84 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
TGTTTTTCAATTTTGCCTT
Done.