Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 517 of 770
Found at i:160534669 original size:21 final size:21
Alignment explanation
Indices: 160534645--160534692 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
160534635 TTCTGTTCTG
**
160534645 CTCCGCCTCCCTTGCTGCTGC
1 CTCCGCCTCCCGCGCTGCTGC
*
160534666 CTCCTCCTCCCGCGCTGCTGC
1 CTCCGCCTCCCGCGCTGCTGC
160534687 CTCCGC
1 CTCCGC
160534693 TCTAAGTTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.00, C:0.56, G:0.19, T:0.25
Consensus pattern (21 bp):
CTCCGCCTCCCGCGCTGCTGC
Found at i:160540785 original size:44 final size:45
Alignment explanation
Indices: 160540695--160540823 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
160540685 GACAGAACGA
*
160540695 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
160540741 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
160540785 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
160540824 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:160548149 original size:44 final size:45
Alignment explanation
Indices: 160548059--160548187 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
160548049 GACAGAACGA
*
160548059 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
160548105 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
160548149 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
160548188 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:160550174 original size:9 final size:9
Alignment explanation
Indices: 160550160--160550287 Score: 112
Period size: 9 Copynumber: 13.6 Consensus size: 9
160550150 ATGTATTAGT
160550160 TAAGTTATG
1 TAAGTTATG
160550169 TAAGTTGTTATG
1 TAA---GTTATG
*
160550181 TACGTTATG
1 TAAGTTATG
*
160550190 TGAGTTATG
1 TAAGTTATG
*
160550199 TAAATTATG
1 TAAGTTATG
160550208 TAAGTTATG
1 TAAGTTATG
*
160550217 TGAGTTATG
1 TAAGTTATG
160550226 TAAGTTGTTATG
1 TAA---GTTATG
*
160550238 TAAATTATG
1 TAAGTTATG
*
160550247 TAAGTTATA
1 TAAGTTATG
* *
160550256 TGAGTTATT
1 TAAGTTATG
160550265 TAAGTTATG
1 TAAGTTATG
* *
160550274 TAATTTATT
1 TAAGTTATG
160550283 TAAGT
1 TAAGT
160550288 AATGATCAAT
Statistics
Matches: 95, Mismatches: 18, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
9 78 0.82
12 17 0.18
ACGTcount: A:0.31, C:0.01, G:0.20, T:0.48
Consensus pattern (9 bp):
TAAGTTATG
Found at i:160550287 original size:57 final size:57
Alignment explanation
Indices: 160550160--160550287 Score: 166
Period size: 57 Copynumber: 2.2 Consensus size: 57
160550150 ATGTATTAGT
** * *
160550160 TAAGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* * * *
160550217 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATTTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* *
160550274 TAATTTATTTAAGT
1 TAAGTTATGTAAGT
160550288 AATGATCAAT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.31, C:0.01, G:0.20, T:0.48
Consensus pattern (57 bp):
TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
Found at i:160551741 original size:183 final size:183
Alignment explanation
Indices: 160551433--160551801 Score: 693
Period size: 183 Copynumber: 2.0 Consensus size: 183
160551423 CCTAGAACAG
* **
160551433 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAATCCTTTATCTAT
1 ATGTAAGATCATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
*
160551498 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAAACAATAGTTGCAGGAGG
160551563 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
160551616 ATGTAAGATCATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATCATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
160551681 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAAACAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAAACAATAGTTGCAGGAGG
*
160551746 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAGTACAGACAC
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
160551799 ATG
1 ATG
160551802 GAACTATATC
Statistics
Matches: 181, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 181 1.00
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (183 bp):
ATGTAAGATCATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAAACAATAGTTGCAGGAGG
AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
Found at i:160551891 original size:14 final size:13
Alignment explanation
Indices: 160551872--160551901 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
160551862 CAATATAATT
160551872 TTACTTCATATATA
1 TTACTTCATATA-A
160551886 TTACTTCATATAA
1 TTACTTCATATAA
160551899 TTA
1 TTA
160551902 TTATAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (13 bp):
TTACTTCATATAA
Found at i:160554223 original size:28 final size:29
Alignment explanation
Indices: 160554166--160554237 Score: 94
Period size: 28 Copynumber: 2.5 Consensus size: 29
160554156 TTAATCAAAA
*
160554166 CTCTAAACCTTAAACCATTAAACTATATC
1 CTCTAAACCTTAAACCACTAAACTATATC
*
160554195 C-CTATAACCTTAAACC-CTAAAGTATATC
1 CTCTA-AACCTTAAACCACTAAACTATATC
*
160554223 CTCTAAACCCTAAAC
1 CTCTAAACCTTAAAC
160554238 TATATCCCCT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
28 23 0.61
29 15 0.39
ACGTcount: A:0.40, C:0.31, G:0.01, T:0.28
Consensus pattern (29 bp):
CTCTAAACCTTAAACCACTAAACTATATC
Found at i:160554229 original size:21 final size:21
Alignment explanation
Indices: 160554196--160554257 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
160554186 AACTATATCC
*
160554196 CTATAACCT-TAAACCCTAAA
1 CTATATCCTCTAAACCCTAAA
*
160554216 GTATATCCTCTAAACCCTAAA
1 CTATATCCTCTAAACCCTAAA
* *
160554237 CTATATCCCCT-AACCATAAA
1 CTATATCCTCTAAACCCTAAA
160554257 C
1 C
160554258 CACAAAACAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
20 16 0.44
21 20 0.56
ACGTcount: A:0.40, C:0.32, G:0.02, T:0.26
Consensus pattern (21 bp):
CTATATCCTCTAAACCCTAAA
Found at i:160554274 original size:28 final size:28
Alignment explanation
Indices: 160554225--160554292 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
160554215 AGTATATCCT
* * *
160554225 CTAAACC-CTAAACTATATCCCCTAA-C
1 CTAAACCACAAAACAATAACCCCTAATC
160554251 CATAAACCACAAAACAATAACCCCTAATC
1 C-TAAACCACAAAACAATAACCCCTAATC
*
160554280 CTTAACCACAAAA
1 CTAAACCACAAAA
160554293 TGTATGAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
26 1 0.03
27 6 0.17
28 26 0.74
29 2 0.06
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.18
Consensus pattern (28 bp):
CTAAACCACAAAACAATAACCCCTAATC
Found at i:160554426 original size:28 final size:29
Alignment explanation
Indices: 160554372--160554440 Score: 88
Period size: 28 Copynumber: 2.4 Consensus size: 29
160554362 ATCAAAACTG
* *
160554372 TAAACCTTAAACCATTAAACTATAT-CCA
1 TAAACCTTAAACCACTAAAATATATCCCA
160554400 TATAACCTTAAACC-CTAAAATATATCCCA
1 TA-AACCTTAAACCACTAAAATATATCCCA
*
160554429 TAAACCCTAAAC
1 TAAACCTTAAAC
160554441 TATATCCCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 20 0.56
29 16 0.44
ACGTcount: A:0.46, C:0.28, G:0.00, T:0.26
Consensus pattern (29 bp):
TAAACCTTAAACCACTAAAATATATCCCA
Found at i:160554455 original size:21 final size:21
Alignment explanation
Indices: 160554408--160554462 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
160554398 CATATAACCT
*
160554408 TAAACCCTAAAATATATCCCA
1 TAAACCCTAAACTATATCCCA
160554429 TAAACCCTAAACTATATCCC-
1 TAAACCCTAAACTATATCCCA
*
160554449 TATAACCTTAAACT
1 TA-AACCCTAAACT
160554463 TTAAAGTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 2 0.06
21 29 0.94
ACGTcount: A:0.44, C:0.29, G:0.00, T:0.27
Consensus pattern (21 bp):
TAAACCCTAAACTATATCCCA
Found at i:160554514 original size:20 final size:21
Alignment explanation
Indices: 160554475--160554515 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
160554465 AAAGTATATA
*
160554475 TATATCCCCTAAACCCTAAAC
1 TATATCCCCTAAACCATAAAC
160554496 TATATCCCCT-AACCATAAAC
1 TATATCCCCTAAACCATAAAC
160554516 CATAAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.39, C:0.37, G:0.00, T:0.24
Consensus pattern (21 bp):
TATATCCCCTAAACCATAAAC
Found at i:160554636 original size:258 final size:252
Alignment explanation
Indices: 160554184--160554656 Score: 811
Period size: 258 Copynumber: 1.9 Consensus size: 252
160554174 CTTAAACCAT
*
160554184 TAAACTATATCCCTATAACCTTAAACCCTAAAGTATATCCTCTAAACCCTAAACTATATCCCCTA
1 TAAACTATATCCCTATAACCTTAAACCCTAAAGTATATCCCCTAAACCCTAAACTATATCCCCTA
*
160554249 ACCATAAACCACAAAACAATAACCCCTAATCCTTAACCACAAAATGTATGAATTAATCATAACCC
66 ACCATAAACCACAAAACAATAACCCCTAAGCCTTAACCACAAAATGTATGAATTAATCATAACCC
*
160554314 TAAACTATATCCCTTGATCCTTAAACCACAAAATAATAACACTAATTAATCAAAACTGTAAACCT
131 TAAACTATATCCCTTGATCCTTAAACCACAAAATAATAACACTAATTAATCAAAACTCTAAACCT
160554379 TAAACCATTAAACTATATCCATATAACCTTAAACCCTAAAATATATCCCATAAACCC
196 TAAACCATTAAACTATATCCATATAACCTTAAACCCTAAAATATATCCCATAAACCC
**
160554436 TAAACTATATCCCTATAACCTTAAACTTTAAAGTATATATATATCCCCTAAACCCTAAACTATAT
1 TAAACTATATCCCTATAACCTTAAACCCTAAAG------TATATCCCCTAAACCCTAAACTATAT
* * *
160554501 CCCCTAACCATAAACCATAAAATAATAACCCTTAAGCCTTAACCACAAAATGTATGAATTAATCA
60 CCCCTAACCATAAACCACAAAACAATAACCCCTAAGCCTTAACCACAAAATGTATGAATTAATCA
*
160554566 TAACCCTAAACTATATCCCTTGATCCTTAAACCACAAAATAATAACACTAATTAATCAATACTCT
125 TAACCCTAAACTATATCCCTTGATCCTTAAACCACAAAATAATAACACTAATTAATCAAAACTCT
160554631 AAACCTTAAACCATTAAACTATATCC
190 AAACCTTAAACCATTAAACTATATCC
160554657 CCTACTAAAG
Statistics
Matches: 206, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
252 31 0.15
258 175 0.85
ACGTcount: A:0.44, C:0.27, G:0.02, T:0.27
Consensus pattern (252 bp):
TAAACTATATCCCTATAACCTTAAACCCTAAAGTATATCCCCTAAACCCTAAACTATATCCCCTA
ACCATAAACCACAAAACAATAACCCCTAAGCCTTAACCACAAAATGTATGAATTAATCATAACCC
TAAACTATATCCCTTGATCCTTAAACCACAAAATAATAACACTAATTAATCAAAACTCTAAACCT
TAAACCATTAAACTATATCCATATAACCTTAAACCCTAAAATATATCCCATAAACCC
Found at i:160554688 original size:14 final size:14
Alignment explanation
Indices: 160554645--160554690 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
160554635 CTTAAACCAT
160554645 TAAACTATATCCCC
1 TAAACTATATCCCC
* *
160554659 T--ACTAAAGTACCC
1 TAAACTATA-TCCCC
160554672 TAAACTATATCCCC
1 TAAACTATATCCCC
160554686 TAAAC
1 TAAAC
160554691 CTTAAACCAC
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
12 5 0.20
13 5 0.20
14 10 0.40
15 5 0.20
ACGTcount: A:0.39, C:0.33, G:0.02, T:0.26
Consensus pattern (14 bp):
TAAACTATATCCCC
Found at i:160554913 original size:43 final size:43
Alignment explanation
Indices: 160554848--160554991 Score: 191
Period size: 43 Copynumber: 3.3 Consensus size: 43
160554838 TTATTTAAAA
160554848 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
* * *
160554891 AAATGCCGCTAAAGACCATGACCTTTAGCGGCACTTTTTTTTAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGC-TTTTTTCAC
* * * * * *
160554935 AAACGCCACTACAGAACA-AACCTTTAGCGACGCTTTTCTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
160554977 AAACGCCGCTAAAGA
1 AAACGCCGCTAAAGA
160554992 ATATAACCTT
Statistics
Matches: 86, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
42 20 0.23
43 44 0.51
44 22 0.26
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
Found at i:160555024 original size:20 final size:20
Alignment explanation
Indices: 160555001--160555038 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
160554991 AATATAACCT
160555001 TTAAAAAATATATATTTTTA
1 TTAAAAAATATATATTTTTA
* *
160555021 TTAAATAATATTTATTTT
1 TTAAAAAATATATATTTT
160555039 CTATATTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TTAAAAAATATATATTTTTA
Found at i:160561551 original size:26 final size:26
Alignment explanation
Indices: 160561522--160561630 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
160561512 TGGTACAAAT
160561522 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
160561548 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
160561574 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
160561599 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
160561625 TGATAA
1 TGATAA
160561631 GAATTTCATG
Statistics
Matches: 79, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
25 24 0.30
26 53 0.67
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:160561592 original size:51 final size:52
Alignment explanation
Indices: 160561522--160561630 Score: 177
Period size: 51 Copynumber: 2.1 Consensus size: 52
160561512 TGGTACAAAT
160561522 TGATAATAGGTTAGGTAAATG-TTCAATGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTC-ATGATAATAGGTTAGGTAAATGTTCCA
* *
160561574 TGATAAT-GGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCA
160561625 TGATAA
1 TGATAA
160561631 GAATTTCATG
Statistics
Matches: 54, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
51 44 0.81
52 10 0.19
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCA
Found at i:160563276 original size:27 final size:27
Alignment explanation
Indices: 160563235--160563347 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
160563225 GAGGAAGCAT
*
160563235 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
160563262 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
160563289 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
160563317 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
160563343 TCTGG
1 TCTGG
160563348 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:160563340 original size:54 final size:54
Alignment explanation
Indices: 160563234--160563347 Score: 167
Period size: 54 Copynumber: 2.1 Consensus size: 54
160563224 GGAGGAAGCA
*
160563234 TTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTG
1 TTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTG
* * * *
160563288 TTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTG
1 TTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCTG
160563342 TTCTGG
1 TTCTGG
160563348 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
TTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTG
Found at i:160564462 original size:18 final size:18
Alignment explanation
Indices: 160564421--160564479 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
160564411 CTTGAATTGC
*
160564421 CCGTGTAATCGCACACGT
1 CCGTGTAATCGCACACAT
160564439 CCGTGTAATCGCACACAT
1 CCGTGTAATCGCACACAT
* * *
160564457 CTGTGTAGTC-CACACAG
1 CCGTGTAATCGCACACAT
160564474 CCGTGT
1 CCGTGT
160564480 GGCACAGACT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
17 11 0.31
18 25 0.69
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (18 bp):
CCGTGTAATCGCACACAT
Found at i:160566558 original size:31 final size:31
Alignment explanation
Indices: 160566483--160566655 Score: 267
Period size: 31 Copynumber: 5.6 Consensus size: 31
160566473 ATTCGATAGA
* * *
160566483 CGAAGCTATCACTATTCACTGATCAAGTAGC
1 CGAAGCTACCACTTTTCACTGATCAGGTAGC
* * *
160566514 TG-AGCTACCACTTTTCACTAATTAGGTAGC
1 CGAAGCTACCACTTTTCACTGATCAGGTAGC
*
160566544 CGAAGCTACTACTTTTCACTGATCAGGTAGC
1 CGAAGCTACCACTTTTCACTGATCAGGTAGC
*
160566575 CGAAGCTACCATTTTTCACTGATCAGGTAGC
1 CGAAGCTACCACTTTTCACTGATCAGGTAGC
160566606 CGAAGCTACCACTTTTCACTGATCAGGTAGC
1 CGAAGCTACCACTTTTCACTGATCAGGTAGC
160566637 CGAAGCTACCACTTTTCAC
1 CGAAGCTACCACTTTTCAC
160566656 ATTGTACACA
Statistics
Matches: 128, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
30 24 0.19
31 104 0.81
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.28
Consensus pattern (31 bp):
CGAAGCTACCACTTTTCACTGATCAGGTAGC
Found at i:160570630 original size:39 final size:39
Alignment explanation
Indices: 160570576--160570701 Score: 198
Period size: 39 Copynumber: 3.2 Consensus size: 39
160570566 TTCAGTGATG
160570576 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
160570615 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * * * *
160570654 TATATCTGAACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
160570693 TATGTCCGG
1 TATATCCGG
160570702 GCTAAAGTCC
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:160570715 original size:39 final size:39
Alignment explanation
Indices: 160570576--160570719 Score: 191
Period size: 39 Copynumber: 3.7 Consensus size: 39
160570566 TTCAGTGATG
*
160570576 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
*
160570615 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * * *
160570654 TATATCTGAACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * *
160570693 TATGTCCGGGC-TAAAGTCCCGCAGGCT
1 TATATCCGGACTTAAGGT-CCGCAGGCT
160570720 TCGAGCTAGT
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
38 5 0.05
39 89 0.95
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:160578749 original size:39 final size:39
Alignment explanation
Indices: 160578690--160578815 Score: 180
Period size: 39 Copynumber: 3.2 Consensus size: 39
160578680 TTCAGTGAAG
* *
160578690 TATATCCGGACTTAGAGTCCGCAGGCTATGTGTTGGAAT
1 TATATCCGGACTTAGTGTCCGCAGGCTATGTGCTGGAAT
*
160578729 TATATCCGGACTTAGTGTCCGCAGGCTATGTACTGGAAT
1 TATATCCGGACTTAGTGTCCGCAGGCTATGTGCTGGAAT
* * * *
160578768 TATATTCGGACTTAATGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGTGTCCGCAGGCTATGTGCTGGAAT
*
160578807 TATGTCCGG
1 TATATCCGG
160578816 GCTAAAGTCC
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (39 bp):
TATATCCGGACTTAGTGTCCGCAGGCTATGTGCTGGAAT
Found at i:160578832 original size:78 final size:78
Alignment explanation
Indices: 160578690--160578833 Score: 175
Period size: 78 Copynumber: 1.8 Consensus size: 78
160578680 TTCAGTGAAG
* * * * * *
160578690 TATATCCGGACTTAGAGTCCGCAGGCTATGTGTTGGAATTATATCCGGACTTAGTGTCCGCAGGC
1 TATATCCGGACTTAGAGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTAAGTGCCCACAGGC
160578755 TATGTACTGGAAT
66 TATGTACTGGAAT
* * *
160578768 TATATTCGGACTTA-ATGTCCGCAGGCTACGTGCTGGAAATATGTCCGGGCTAAAGT-CCCACAG
1 TATATCCGGACTTAGA-GTCCGCAGGCTACGTGCTGGAAATATATCCGGACT-AAGTGCCCACAG
160578831 GCT
64 GCT
160578834 TCGAGCTGGT
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
77 1 0.02
78 51 0.93
79 3 0.05
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (78 bp):
TATATCCGGACTTAGAGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTAAGTGCCCACAGGC
TATGTACTGGAAT
Found at i:160578880 original size:38 final size:38
Alignment explanation
Indices: 160578786--160578884 Score: 101
Period size: 39 Copynumber: 2.6 Consensus size: 38
160578776 GACTTAATGT
* *
160578786 CCGCAGGCTACGTGCTGGAAATATGTCCGGGCTAAAGTC
1 CCGCAGGCT-CGTGCTGGTAATATGACCGGGCTAAAGTC
* * * * *
160578825 CCACAGGCTTCGAGCTGGTATTAT-ACCGGGTTTAAATTC
1 CCGCAGGC-TCGTGCTGGTAATATGACCGGG-CTAAAGTC
160578864 CCGCAGGCTCGTGCTGGTAAT
1 CCGCAGGCTCGTGCTGGTAAT
160578885 TGGTTTCAAG
Statistics
Matches: 48, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
38 16 0.33
39 31 0.65
40 1 0.02
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGCAGGCTCGTGCTGGTAATATGACCGGGCTAAAGTC
Found at i:160583017 original size:26 final size:26
Alignment explanation
Indices: 160582988--160583040 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
160582978 TTTACAGTTT
160582988 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
160583014 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
160583040 T
1 T
160583041 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:160583448 original size:15 final size:15
Alignment explanation
Indices: 160583428--160583466 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
160583418 CTGTTACCTG
160583428 AATGGGCTTAGGCCC
1 AATGGGCTTAGGCCC
160583443 AATGGGCTTAGGCCC
1 AATGGGCTTAGGCCC
160583458 AATGGGCTT
1 AATGGGCTT
160583467 GAGCTAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.21, C:0.23, G:0.33, T:0.23
Consensus pattern (15 bp):
AATGGGCTTAGGCCC
Found at i:160585466 original size:16 final size:16
Alignment explanation
Indices: 160585435--160585477 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
160585425 TGTAAATTAG
*
160585435 ATTTAAAATAATATAAA
1 ATTTATAAT-ATATAAA
*
160585452 ATTTATAATATATAAC
1 ATTTATAATATATAAA
*
160585468 TTTTATAATA
1 ATTTATAATA
160585478 AAAAAACTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 15 0.65
17 8 0.35
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTTATAATATATAAA
Found at i:160587860 original size:93 final size:93
Alignment explanation
Indices: 160587748--160587918 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
160587738 GCCCATAAGT
* *
160587748 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
160587813 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
160587841 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
160587906 CGAGTTCGGATGC
66 CGAGTTCGGATGC
160587919 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:160587915 original size:46 final size:46
Alignment explanation
Indices: 160587740--160587915 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
160587730 TGTAACCCGC
* * *
160587740 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
160587786 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
160587836 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
160587879 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
160587916 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:160590530 original size:2 final size:2
Alignment explanation
Indices: 160590523--160590740 Score: 436
Period size: 2 Copynumber: 109.0 Consensus size: 2
160590513 CGCCTTCTTC
160590523 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
160590565 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
160590607 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
160590649 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
160590691 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
160590733 CT CT CT CT
1 CT CT CT CT
160590741 TTTGTTATTT
Statistics
Matches: 216, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 216 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:160596370 original size:26 final size:26
Alignment explanation
Indices: 160596306--160596428 Score: 187
Period size: 26 Copynumber: 4.8 Consensus size: 26
160596296 CTCTTTTAAT
*
160596306 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
160596331 AACTGGGGCA-AAGCCCTTTTTGATA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
160596356 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
160596382 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
160596408 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
160596429 GCACTTCCTC
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 33 0.37
26 57 0.63
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGATA
Found at i:160596419 original size:52 final size:50
Alignment explanation
Indices: 160596293--160596428 Score: 204
Period size: 51 Copynumber: 2.7 Consensus size: 50
160596283 CTGGAGGCCT
160596293 AGCCTCTTTTAAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
*
160596342 AGCCCTTTTTGATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCC-TTTTAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-A
*
160596394 AGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTT
1 AGCCCTTTT-AATAAACTGGGGCATAAGCCCTTTT
160596429 GCACTTCCTC
Statistics
Matches: 79, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
48 1 0.01
49 10 0.13
50 10 0.13
51 29 0.37
52 29 0.37
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (50 bp):
AGCCCTTTTAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
Found at i:160596503 original size:20 final size:20
Alignment explanation
Indices: 160596478--160596552 Score: 95
Period size: 20 Copynumber: 3.9 Consensus size: 20
160596468 TTATGAATAC
160596478 ATCATGTGCACT-TCATACAT
1 ATCATGTGCA-TATCATACAT
160596498 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
160596518 GTCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
160596538 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
160596553 TCCCACGTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
18 8 0.16
19 1 0.02
20 40 0.78
21 2 0.04
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:160598399 original size:25 final size:25
Alignment explanation
Indices: 160598367--160598415 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
160598357 AAATATGAGG
160598367 ATTACCTAAAAAATAATAAAGCAAT
1 ATTACCTAAAAAATAATAAAGCAAT
160598392 ATTACCTAAAAAATAATAAAGCAA
1 ATTACCTAAAAAATAATAAAGCAA
160598416 ACAAAGTGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.61, C:0.12, G:0.04, T:0.22
Consensus pattern (25 bp):
ATTACCTAAAAAATAATAAAGCAAT
Found at i:160598692 original size:8 final size:8
Alignment explanation
Indices: 160598675--160598713 Score: 62
Period size: 8 Copynumber: 5.0 Consensus size: 8
160598665 GCAGTGGATC
160598675 AAAAGCCG
1 AAAAGCCG
*
160598683 AAAAGTCG
1 AAAAGCCG
160598691 AAAAG-CG
1 AAAAGCCG
160598698 AAAAGCCG
1 AAAAGCCG
160598706 AAAAGCCG
1 AAAAGCCG
160598714 GTATTTTGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
7 7 0.24
8 22 0.76
ACGTcount: A:0.51, C:0.21, G:0.26, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:160598701 original size:15 final size:15
Alignment explanation
Indices: 160598675--160598711 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
160598665 GCAGTGGATC
*
160598675 AAAAGCCGAAAAGTCG
1 AAAAG-CGAAAAGCCG
160598691 AAAAGCGAAAAGCCG
1 AAAAGCGAAAAGCCG
160598706 AAAAGC
1 AAAAGC
160598712 CGGTATTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.54, C:0.19, G:0.24, T:0.03
Consensus pattern (15 bp):
AAAAGCGAAAAGCCG
Found at i:160599014 original size:27 final size:28
Alignment explanation
Indices: 160598958--160599021 Score: 103
Period size: 27 Copynumber: 2.3 Consensus size: 28
160598948 ATTTACTAGA
*
160598958 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
160598986 ATACCCCTATGTATGC-AAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
160599013 ATACCCCTA
1 ATACCCCTA
160599022 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 18 0.53
28 16 0.47
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:160599157 original size:28 final size:26
Alignment explanation
Indices: 160599125--160599214 Score: 81
Period size: 27 Copynumber: 3.2 Consensus size: 26
160599115 AGGAAGCGTC
*
160599125 CTGGTGGCTATACCACAAATTATCTGTT
1 CTGGTGGC-ATGCCACAAA-TATCTGTT
* * **
160599153 CTGGTGGCCCTGCTACGTATATCTGTT
1 CTGGTGG-CATGCCACAAATATCTGTT
160599180 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCA-TGCCAC-AAATATCTGT-T
160599209 CTGGTG
1 CTGGTG
160599215 ACTCTGTCAC
Statistics
Matches: 49, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
26 1 0.02
27 20 0.41
28 20 0.41
29 8 0.16
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.33
Consensus pattern (26 bp):
CTGGTGGCATGCCACAAATATCTGTT
Found at i:160599225 original size:29 final size:28
Alignment explanation
Indices: 160599137--160599225 Score: 81
Period size: 27 Copynumber: 3.2 Consensus size: 28
160599127 GGTGGCTATA
* * *
160599137 CCACAAATTATCTGTTCTGGTGGCCCTG
1 CCACAAAATATCTGTTCTGGTGACACTG
* ** *
160599165 CTAC-GTATATCTGTTCTGGTGGCACTG
1 CCACAAAATATCTGTTCTGGTGACACTG
*
160599192 CCACAAAATATCTGTATCTGGTGACTCTG
1 CCACAAAATATCTGT-TCTGGTGACACTG
*
160599221 TCACA
1 CCACA
160599226 TTTTCTGTAT
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
27 22 0.46
28 11 0.23
29 15 0.31
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (28 bp):
CCACAAAATATCTGTTCTGGTGACACTG
Found at i:160602693 original size:39 final size:39
Alignment explanation
Indices: 160602588--160602768 Score: 194
Period size: 39 Copynumber: 4.6 Consensus size: 39
160602578 GCTACTCGTT
* *
160602588 CAAATGCCTTCGGGACATAGCCCGGTA-TAGTAA-TCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGAATTAGTAACTCGCA
* *
160602626 CAAATG-CTTC-GACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTAACTCGCA
* *
160602663 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTAACTCGCA
* *
160602702 CAAATGCCTTCGGATCTTAGTCCGG-ATATAGTCAACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGAAT-TAGT-AAC-TCGCA
160602744 CAAA-GCCTTCGAGACTTAGCCCGGA
1 CAAATGCCTTCG-GACTTAGCCCGGA
160602769 CATCATTCGA
Statistics
Matches: 120, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
35 10 0.08
36 6 0.05
37 14 0.12
38 10 0.08
39 38 0.32
40 13 0.11
41 19 0.16
42 10 0.08
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:160607369 original size:40 final size:40
Alignment explanation
Indices: 160607218--160607381 Score: 194
Period size: 40 Copynumber: 4.1 Consensus size: 40
160607208 TCGAATGATG
* *
160607218 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
160607258 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
160607297 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
160607337 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
160607377 TCCGG
1 TCCGG
160607382 TTAAATTCCG
Statistics
Matches: 108, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
39 37 0.34
40 63 0.58
41 8 0.07
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:160607381 original size:79 final size:80
Alignment explanation
Indices: 160607218--160607369 Score: 202
Period size: 79 Copynumber: 1.9 Consensus size: 80
160607208 TCGAATGATG
*
160607218 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
**
160607283 GTGCGAGTTACTAAT
66 GAACGAGTTACTAAT
* * * *
160607298 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAACCGGACTAAGAT-CCGAAGGCAT
160607360 TTGAACGAGT
64 TTGAACGAGT
160607370 AGCTATATCC
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.02
79 44 0.70
80 18 0.29
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTTACTAAT
Found at i:160615276 original size:40 final size:39
Alignment explanation
Indices: 160615219--160615403 Score: 214
Period size: 40 Copynumber: 4.7 Consensus size: 39
160615209 TCGAATGATG
*
160615219 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTA-A
* *
160615259 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAA
*
160615298 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCAAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-AA
* *
160615338 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-A
* * *
160615378 ACCGGGATATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
160615404 AATGAGTAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 34 0.27
40 84 0.67
41 8 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAA
Found at i:160615355 original size:79 final size:81
Alignment explanation
Indices: 160615219--160615401 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
160615209 TCGAATGATG
* *
160615219 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
160615283 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* **
160615298 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-AAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
160615360 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* * *
160615378 ACCGGGATATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
160615402 TGAATGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.66
80 30 0.33
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:160619023 original size:39 final size:40
Alignment explanation
Indices: 160618857--160619112 Score: 387
Period size: 40 Copynumber: 6.5 Consensus size: 40
160618847 TGGATGATAA
* * *
160618857 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
160618897 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
160618937 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
160618977 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
160619016 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
160619055 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
160619095 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
160619113 TACTTGGCTT
Statistics
Matches: 203, Mismatches: 9, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
38 9 0.04
39 73 0.36
40 121 0.60
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:160623313 original size:29 final size:29
Alignment explanation
Indices: 160623280--160623440 Score: 223
Period size: 29 Copynumber: 5.6 Consensus size: 29
160623270 GTGACGAGAT
160623280 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
160623309 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
160623338 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
160623367 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
160623396 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
160623425 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
160623441 GGCTTAAATT
Statistics
Matches: 118, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 118 1.00
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:160631327 original size:29 final size:29
Alignment explanation
Indices: 160631294--160631396 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 29
160631284 GTGACGAGAT
*
160631294 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
160631323 TGGCACTAAGTGTGCGTGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* ** * * ***
160631352 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
160631381 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
160631397 GGCTTAAATT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 62 1.00
ACGTcount: A:0.23, C:0.17, G:0.36, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:160639994 original size:40 final size:39
Alignment explanation
Indices: 160639950--160640179 Score: 275
Period size: 39 Copynumber: 5.9 Consensus size: 39
160639940 GTTCAAAACA
* * ** * *
160639950 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
160639990 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
160640030 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* * *
160640069 CCTTCGGGCTTAGCCCGGATATCACAATTCGCATAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* * *
160640108 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACATTTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
160640147 -CTTC-GGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
160640180 TTCATTCACA
Statistics
Matches: 173, Mismatches: 17, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
37 29 0.17
38 4 0.02
39 100 0.58
40 40 0.23
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:160640181 original size:37 final size:39
Alignment explanation
Indices: 160639980--160640179 Score: 305
Period size: 39 Copynumber: 5.2 Consensus size: 39
160639970 TATGGTAACC
* * *
160639980 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
* **
160640020 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
160640059 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
*
160640098 CGCATAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
*
160640137 CGCACATTTG-CTTC-GGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
160640174 CGCACA
1 CGCACA
160640180 TTCATTCACA
Statistics
Matches: 150, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
37 29 0.19
38 4 0.03
39 100 0.67
40 17 0.11
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:160648098 original size:40 final size:39
Alignment explanation
Indices: 160648054--160648283 Score: 293
Period size: 39 Copynumber: 5.9 Consensus size: 39
160648044 GTTCAAAACA
* * ** * *
160648054 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
160648094 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
160648134 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
160648173 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
160648212 CCTTCGGGCTTAGCCCGGATATCACAATTCGCAC-ATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
160648250 CCTTC-GGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
160648284 TTCATCACAT
Statistics
Matches: 175, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
37 28 0.16
38 9 0.05
39 98 0.56
40 40 0.23
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:160648285 original size:37 final size:39
Alignment explanation
Indices: 160648084--160648283 Score: 323
Period size: 39 Copynumber: 5.2 Consensus size: 39
160648074 TATGGTAACC
* * *
160648084 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
* **
160648124 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
160648163 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
160648202 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
160648241 CGCAC-ATTGCCTTC-GGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
160648278 CGCACA
1 CGCACA
160648284 TTCATCACAT
Statistics
Matches: 152, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
37 28 0.18
38 9 0.06
39 98 0.64
40 17 0.11
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:160657053 original size:27 final size:28
Alignment explanation
Indices: 160656997--160657066 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
160656987 AAACTTGTAC
* *
160656997 AGCACTAAGTGTGTGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGATTGATCATAT
*
160657025 AGCACTAAGTGTGCGA-ATTGATTATAT
1 AGCACTAAGTGTGCGAGATTGATCATAT
160657052 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
160657067 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.62
28 15 0.38
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGATTGATCATAT
Found at i:160657077 original size:27 final size:27
Alignment explanation
Indices: 160657021--160657078 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
160657011 GAGTTTGATC
* * *
160657021 ATATAGCACTAAGTGTGCGAATTGATT
1 ATATAGCACTAAGTGTGCGAACTCACT
*
160657048 ATATAGCACTAAGTGTGCGGACTCACT
1 ATATAGCACTAAGTGTGCGAACTCACT
160657075 ATAT
1 ATAT
160657079 GCTTTTGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.31
Consensus pattern (27 bp):
ATATAGCACTAAGTGTGCGAACTCACT
Found at i:160666045 original size:29 final size:29
Alignment explanation
Indices: 160666011--160666113 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
160666001 TAATCAGCCG
** *
160666011 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
160666040 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
160666069 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
160666098 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
160666114 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:160683950 original size:28 final size:28
Alignment explanation
Indices: 160683907--160684054 Score: 224
Period size: 28 Copynumber: 5.3 Consensus size: 28
160683897 TGGGAAGTAG
*
160683907 TTGGGCCTGATAGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
160683935 TTGGGTCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
160683963 TTGGGTCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
160683991 TTGGGCCTGATGGGACATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * * *
160684019 CTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
160684047 TTGGGCCT
1 TTGGGCCT
160684055 AAAGGGGCCA
Statistics
Matches: 110, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 110 1.00
ACGTcount: A:0.22, C:0.14, G:0.36, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:160684401 original size:27 final size:27
Alignment explanation
Indices: 160684371--160684896 Score: 534
Period size: 27 Copynumber: 19.6 Consensus size: 27
160684361 TAATAAAGAG
160684371 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
160684398 AAATTA-TCAAAATATCCTCTA-TTGTG
1 AAATTACT-GAAATACCCTCGATTTGTA
*
160684424 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
160684451 AAATTACTGAAATACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
*
160684477 AAATTACTGAAATACCCTCGATTTGAA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
160684504 AAATTACTGAAATACCCCCGATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
160684531 AAATTA-TCGAAACATCCTCGATTTATA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
160684558 AAATTACCGAAATACCCCCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
160684585 AAATTA-TCGAAATACCCTCGA-TTGTG
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
160684611 AAATTACTAAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
160684638 AAATTACCGAAATACCCTCGATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
160684665 AAATTA-TCAAAACACCCTCCACTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* * * *
160684692 AAATTACTGAAACATCCTCAATTTTTA
1 AAATTACTGAAATACCCTCGATTTGTA
** *
160684719 AAATTACCAAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
160684746 AAACTACCT-AAATACCCTCAATTTGTA
1 AAATTA-CTGAAATACCCTCGATTTGTA
*
160684773 AAATTACCGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** *
160684800 AAATTACCAAAATGCCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
160684827 AAATTA-TCGAAACACCCTCAATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
160684854 AAATTA-TCGAAATACCCTTG-TAGTGTA
1 AAATTACT-GAAATACCCTCGAT-TTGTA
*
160684881 AAATTACCGAAATACC
1 AAATTACTGAAATACC
160684897 GTTGTAGTGT
Statistics
Matches: 413, Mismatches: 70, Indels: 32
0.80 0.14 0.06
Matches are distributed among these distances:
26 70 0.17
27 341 0.83
28 2 0.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:160684901 original size:27 final size:27
Alignment explanation
Indices: 160684769--160684938 Score: 130
Period size: 27 Copynumber: 6.3 Consensus size: 27
160684759 ACCCTCAATT
* * *
160684769 TGTAAAATTACCGAAATACCCTCG-ATT
1 TGTAAAATTATCGAAATACCCTTGTA-G
* * * * *
160684796 TGTAAAATTACCAAAATGCCCTCG-ATT
1 TGTAAAATTATCGAAATACCCTTGTA-G
* ** *
160684823 TGTAAAATTATCGAAACACCC-TCAATT
1 TGTAAAATTATCGAAATACCCTTGTA-G
160684850 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
* *
160684877 TGTAAAATTACCGAAATACCGTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
* * *
160684904 TGTAAAATGATCGACATACCCCTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
160684931 GGTAAAAT
1 TGTAAAAT
160684939 GACTATTTTG
Statistics
Matches: 121, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
27 119 0.98
28 2 0.02
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCTTGTAG
Found at i:160684911 original size:81 final size:81
Alignment explanation
Indices: 160684371--160684896 Score: 600
Period size: 81 Copynumber: 6.5 Consensus size: 81
160684361 TAATAAAGAG
* * * * *
160684371 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATATCCTCTA-TTGTGAAATTA-CTGA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATC-GA
160684434 AATACCCTCAATTTGTA
65 AATACCCTCAATTTGTA
* * *
160684451 AAATTACTGAAATACCCTCGA-TTGTGAAATTACTGAAATACCCTCGATTTGAAAAATTA-CTGA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATC-GA
* * *
160684514 AATACCCCCGATTTGTG
65 AATACCCTCAATTTGTA
* * * *
160684531 AAATTA-TCGAAACATCCTCGATTTATAAAATTACCGAAATACCCCCGATTTGTAAAATTATCGA
1 AAATTACT-GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGA
* *
160684595 AATACCCTCGA-TTGTG
65 AATACCCTCAATTTGTA
* * * *
160684611 AAATTACTAAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCGATTTGTGAAATTATCAAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAA
* * *
160684676 ACACCCTCCACTTGTA
66 ATACCCTCAATTTGTA
* * * * * * * * *
160684692 AAATTACTGAAACATCCTCAATTTTTAAAATTACCAAAACACCCTCGATTTGTAAAACTACCTAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAA
160684757 ATACCCTCAATTTGTA
66 ATACCCTCAATTTGTA
* * *
160684773 AAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATGCCCTCGATTTGTAAAATTATCGAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAA
*
160684838 ACACCCTCAATTTGTA
66 ATACCCTCAATTTGTA
* *
160684854 AAATTA-TCGAAATACCCTTG-TAGTGTAAAATTACCGAAATACC
1 AAATTACT-GAAATACCCTCGAT-TTGTAAAATTACCGAAATACC
160684897 GTTGTAGTGT
Statistics
Matches: 379, Mismatches: 59, Indels: 15
0.84 0.13 0.03
Matches are distributed among these distances:
79 21 0.06
80 134 0.35
81 223 0.59
82 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (81 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAA
ATACCCTCAATTTGTA
Found at i:160686539 original size:28 final size:29
Alignment explanation
Indices: 160686507--160686605 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
160686497 ATAATAAGCC
*
160686507 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
160686535 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
160686563 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
160686592 CGCACACTTAGTGC
1 CGCACACTTAGTGC
160686606 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:160694530 original size:28 final size:29
Alignment explanation
Indices: 160694498--160694596 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
160694488 ATAATAAGCC
*
160694498 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
160694526 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
160694554 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
160694583 CGCACACTTAGTGC
1 CGCACACTTAGTGC
160694597 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:160697470 original size:40 final size:40
Alignment explanation
Indices: 160697426--160697670 Score: 379
Period size: 40 Copynumber: 6.2 Consensus size: 40
160697416 GAGAATTGAG
160697426 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
**
160697466 AGTGATGTATCCATACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
160697506 AGTGATGTATCCGTACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
160697546 AGTGATGTATCCGGACTAAG-TCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
160697585 AGTGATGT-CCCGGACTAAGTTCCG-AGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * * *
160697623 AGTGATATATCCGGACTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
160697663 GGTGATGT
1 AGTGATGT
160697671 TGTATTCGGG
Statistics
Matches: 189, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
38 31 0.16
39 44 0.23
40 114 0.60
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:160697649 original size:117 final size:120
Alignment explanation
Indices: 160697426--160697670 Score: 379
Period size: 117 Copynumber: 2.1 Consensus size: 120
160697416 GAGAATTGAG
* *
160697426 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCATACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTACCCAGACTAAGTTCCG
* * * * *
160697491 AAGAGCATTCGTGCTAGTGATGTATCCGTACTAAGTTCCGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCAATCATGCT
*
160697546 AGTGATGTATCCGGACTAAG-TCCGAAGAGCATTCGTGCTAGTGATGT-CCCGGACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTACCCAGACTAAGTTCCG
*
160697609 -AGAGCATTCGTGCTAGTGATATATCCGGACTAGGTCCCGAAGAGCAATCATGCT
66 AAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCAATCATGCT
*
160697663 GGTGATGT
1 AGTGATGT
160697671 TGTATTCGGG
Statistics
Matches: 115, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
117 55 0.48
118 13 0.11
119 27 0.23
120 20 0.17
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (120 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTACCCAGACTAAGTTCCG
AAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCAATCATGCT
Found at i:160701748 original size:49 final size:49
Alignment explanation
Indices: 160701695--160701978 Score: 477
Period size: 49 Copynumber: 5.9 Consensus size: 49
160701685 GATTTTATGC
*
160701695 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGGTGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
* *
160701744 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCAAATGGCCGGTGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
160701793 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
*
160701840 GATGAATGTGAAAGTGTATATTTATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
*
160701889 GATGAATGTGAAAGTGTATATATATATGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
* *
160701938 GATGAATGTGAAAGTG--TATATATGTGATAAAGCCGAATGGC
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
160701979 TAATGTGAAA
Statistics
Matches: 224, Mismatches: 9, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
47 67 0.30
49 157 0.70
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:160701841 original size:96 final size:97
Alignment explanation
Indices: 160701695--160701978 Score: 466
Period size: 96 Copynumber: 2.9 Consensus size: 97
160701685 GATTTTATGC
*
160701695 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
160701760 TATATATATGTGATAAGGCCAAATGGCCGGTGT
65 TATATATATGTGATAAGGCCAAATGGCCGATGT
160701793 GATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 GATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
160701857 ATATTTATGTGATAAGGCCTAATGGCCGATGT
66 ATATATATGTGATAAGGCCAAATGGCCGATGT
*
160701889 GATGAATGTGAAAGTGTATATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
160701954 --TATATATGTGATAAAGCCGAATGGC
65 TATATATATGTGATAAGGCCAAATGGC
160701979 TAATGTGAAA
Statistics
Matches: 176, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
96 114 0.65
98 62 0.35
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (97 bp):
GATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
ATATATATGTGATAAGGCCAAATGGCCGATGT
Found at i:160701877 original size:145 final size:145
Alignment explanation
Indices: 160701695--160701978 Score: 505
Period size: 145 Copynumber: 2.0 Consensus size: 145
160701685 GATTTTATGC
*
160701695 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
160701760 TATATATATGTGATAAGGCCAAATGGCCGGTGTGATGAATGTGAAAGTGTATATATGTGATAAGG
66 TATATATATATGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAAG
*
160701825 CCTAATGGCCGATGT
131 CCGAATGGCCGATGT
*
160701840 GATGAATGTGAAAGTGTATATTTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
160701905 TATATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAAG
66 TATATATATATGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAAG
160701970 CCGAATGGC
131 CCGAATGGC
160701979 TAATGTGAAA
Statistics
Matches: 132, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
145 132 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (145 bp):
GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATATATGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAAG
CCGAATGGCCGATGT
Found at i:160702017 original size:48 final size:48
Alignment explanation
Indices: 160701956--160702131 Score: 271
Period size: 48 Copynumber: 3.7 Consensus size: 48
160701946 TGAAAGTGTA
* * *
160701956 TATATGTGATAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
1 TATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATG
160702004 TATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATG
* *
160702052 TATATGTCGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATG
* * * *
160702100 AATATGTGGTAAAGCCGTATGGCTAATCTGAA
1 TATATGTGGTAAAGCCGAATGGCGAATGTGAA
160702132 TGTTGTAACA
Statistics
Matches: 118, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 118 1.00
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATG
Found at i:160702056 original size:145 final size:144
Alignment explanation
Indices: 160701698--160702034 Score: 412
Period size: 145 Copynumber: 2.3 Consensus size: 144
160701688 TTTATGCGAT
* * * * * * *
160701698 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTAT
1 GAATATGAAAGTGTATATTTATGTGATAAAGCCGAATGGCCGATGTGATGAATATGAAAGTATAT
* * * *
160701763 ATATATGTGATAAGGCCAAATGGCCGGTGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
66 ATATATATGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAAGCCG
*
160701828 AATGGCCGATGTGA
131 AATGGCCAATGTGA
* * * * *
160701842 TGAATGTGAAAGTGTATATTTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 -GAATATGAAAGTGTATATTTATGTGATAAAGCCGAATGGCCGATGTGATGAATATGAAAGTATA
*
160701907 TATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAAGCC
65 TATATATATGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAAGCC
*
160701972 GAATGGCTAATGTGA
130 GAATGGCCAATGTGA
* *
160701987 -AATAT-ATA-TGTGATATGTATATGTGGTAAAGCCGAATGG-CGAATGTGA
1 GAATATGAAAGTGT-ATAT-T-TATGTGATAAAGCCGAATGGCCG-ATGTGA
160702035 AATATATATG
Statistics
Matches: 174, Mismatches: 14, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
141 3 0.02
142 6 0.03
143 7 0.04
144 23 0.13
145 135 0.78
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (144 bp):
GAATATGAAAGTGTATATTTATGTGATAAAGCCGAATGGCCGATGTGATGAATATGAAAGTATAT
ATATATATGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAAGCCG
AATGGCCAATGTGA
Found at i:160703601 original size:10 final size:10
Alignment explanation
Indices: 160703549--160703601 Score: 54
Period size: 10 Copynumber: 5.1 Consensus size: 10
160703539 CTTTTTCTTC
*
160703549 AATTTAATTT
1 AATTTATTTT
*
160703559 AATTATATAATT
1 AATT-TAT-TTT
160703571 AA-TTATTTTT
1 AATTTA-TTTT
160703581 AATTTATTTT
1 AATTTATTTT
160703591 AATTTATTTT
1 AATTTATTTT
160703601 A
1 A
160703602 GTTCAATTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
10 25 0.69
11 7 0.19
12 4 0.11
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
AATTTATTTT
Found at i:160703623 original size:23 final size:24
Alignment explanation
Indices: 160703581--160703626 Score: 76
Period size: 23 Copynumber: 1.9 Consensus size: 24
160703571 AATTATTTTT
160703581 AATTTATTTTAATTTATTTTAGTTC
1 AATTTATTTT-ATTTATTTTAGTTC
160703606 AATTTATTTT-TTTATTTTAGT
1 AATTTATTTTATTTATTTTAGT
160703627 ATAAGAAGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 11 0.52
25 10 0.48
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.67
Consensus pattern (24 bp):
AATTTATTTTATTTATTTTAGTTC
Found at i:160704339 original size:2 final size:2
Alignment explanation
Indices: 160704332--160704373 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
160704322 AATAGTTAGA
160704332 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
160704374 TACAAGATCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:160705049 original size:17 final size:17
Alignment explanation
Indices: 160705027--160705073 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
160705017 TTAATTATTT
160705027 ATTAAAATTTCAAATAA
1 ATTAAAATTTCAAATAA
* * *
160705044 ATTAAAAATTCAACTAT
1 ATTAAAATTTCAAATAA
160705061 A-TAAAATTT-AAAT
1 ATTAAAATTTCAAAT
160705074 TTAATGCCTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
15 3 0.12
16 7 0.28
17 15 0.60
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.36
Consensus pattern (17 bp):
ATTAAAATTTCAAATAA
Found at i:160706420 original size:20 final size:20
Alignment explanation
Indices: 160706383--160706421 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
160706373 GTTTATTTGA
*
160706383 ATCTGTTATCTAATCTGTAC
1 ATCTGTTATCTAAACTGTAC
160706403 ATCTGTT-TCTATAACTGTA
1 ATCTGTTATCTA-AACTGTA
160706422 TTTGAGAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.26, C:0.18, G:0.10, T:0.46
Consensus pattern (20 bp):
ATCTGTTATCTAAACTGTAC
Found at i:160707309 original size:16 final size:15
Alignment explanation
Indices: 160707277--160707310 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
160707267 AAAGAATAAA
*
160707277 ATTTTATATTGAATT
1 ATTTTATATTAAATT
160707292 ATTTTATATTTAAATT
1 ATTTTATA-TTAAATT
160707308 ATT
1 ATT
160707311 ATGTTTCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (15 bp):
ATTTTATATTAAATT
Found at i:160707421 original size:17 final size:18
Alignment explanation
Indices: 160707399--160707434 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
160707389 ATATATAAAA
160707399 TTTATAA-ATAATAAATT
1 TTTATAATATAATAAATT
*
160707416 TTTATAATATAATATATT
1 TTTATAATATAATAAATT
160707434 T
1 T
160707435 CATTTATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TTTATAATATAATAAATT
Found at i:160708623 original size:21 final size:21
Alignment explanation
Indices: 160708597--160708643 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
160708587 CATAATGATT
160708597 TTTTTTATATTT-AATTTTTCA
1 TTTTTTATATTTAAATTTTT-A
*
160708618 TTTTTTATTTTTAAATTTTTA
1 TTTTTTATATTTAAATTTTTA
160708639 TTTTT
1 TTTTT
160708644 ATTAAATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (21 bp):
TTTTTTATATTTAAATTTTTA
Found at i:160708840 original size:29 final size:29
Alignment explanation
Indices: 160708758--160708844 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
160708748 AAATTTCAAA
* *
160708758 ATATTTT-AAAATATTTTTTATAAATATTC
1 ATATTTTAAAAATATTTTTTAT-AATTTTT
** *
160708787 ATATTTTAAAAATAAATTTAATAATTTTT
1 ATATTTTAAAAATATTTTTTATAATTTTT
160708816 A-ATTTTAAAAATTATTTTTTATAATTTTT
1 ATATTTTAAAAA-TATTTTTTATAATTTTT
160708845 TAAAATTTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
28 10 0.21
29 27 0.56
30 11 0.23
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (29 bp):
ATATTTTAAAAATATTTTTTATAATTTTT
Found at i:160708843 original size:9 final size:10
Alignment explanation
Indices: 160708829--160708858 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
160708819 TTTAAAAATT
*
160708829 ATTTTTTATA
1 ATTTTTTAAA
160708839 ATTTTTTAAA
1 ATTTTTTAAA
160708849 ATTTTTTAAA
1 ATTTTTTAAA
160708859 TTTAAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (10 bp):
ATTTTTTAAA
Found at i:160709707 original size:20 final size:21
Alignment explanation
Indices: 160709670--160709714 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
160709660 AGTACATTGA
*
160709670 ATTTTATTTTAAATATTTAAT
1 ATTTAATTTTAAATATTTAAT
160709691 ATTTAATTTTATAAT-TTATAAT
1 ATTTAATTTTA-AATATT-TAAT
160709713 AT
1 AT
160709715 AACCTCCTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTTAATTTTAAATATTTAAT
Found at i:160711374 original size:22 final size:22
Alignment explanation
Indices: 160711327--160711398 Score: 83
Period size: 22 Copynumber: 3.3 Consensus size: 22
160711317 TGTGAGGAGG
**
160711327 GGCACACGACCATATG-ACTGA
1 GGCACACGACCATATGAAGAGA
*
160711348 GGCACACGCCCATATGAAGAGA
1 GGCACACGACCATATGAAGAGA
* * *
160711370 GGCACACGGCCGTGTGAAGAGA
1 GGCACACGACCATATGAAGAGA
160711392 GGCACAC
1 GGCACAC
160711399 AGCCGTGTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
21 15 0.34
22 29 0.66
ACGTcount: A:0.32, C:0.28, G:0.31, T:0.10
Consensus pattern (22 bp):
GGCACACGACCATATGAAGAGA
Found at i:160711403 original size:22 final size:22
Alignment explanation
Indices: 160711362--160711408 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
160711352 CACGCCCATA
*
160711362 TGAAGAGAGGCACACGGCCGTG
1 TGAAGAGAGGCACACAGCCGTG
160711384 TGAAGAGAGGCACACAGCCGTG
1 TGAAGAGAGGCACACAGCCGTG
160711406 TGA
1 TGA
160711409 CTAAGGCACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.38, T:0.11
Consensus pattern (22 bp):
TGAAGAGAGGCACACAGCCGTG
Found at i:160712109 original size:18 final size:18
Alignment explanation
Indices: 160712074--160712124 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
160712064 CCCAAGAGAA
* **
160712074 AGAAAGAAAAAATCAAAG
1 AGAAAGCAAAAAGAAAAG
160712092 AGAAAGCAAAAAGAAAAG
1 AGAAAGCAAAAAGAAAAG
*
160712110 A-AACAACAAAAAGAA
1 AGAA-AGCAAAAAGAA
160712125 CGTCCAGGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 2 0.07
18 26 0.93
ACGTcount: A:0.75, C:0.08, G:0.16, T:0.02
Consensus pattern (18 bp):
AGAAAGCAAAAAGAAAAG
Found at i:160713190 original size:45 final size:45
Alignment explanation
Indices: 160713119--160713263 Score: 150
Period size: 45 Copynumber: 3.2 Consensus size: 45
160713109 ACAACATGTT
* * * * *
160713119 TGCAGATTAAA-CTGCTAGTACGGTGTGGTTAAACCACTCATTAT
1 TGCAGATAAAAGCTGCTAATACGGTGTGGATAAACCACTCAATAG
* * * * * *
160713163 TGCAGATAAAAGTTGCTAATACAGTGTGAATAAACTACCCAAACAG
1 TGCAGATAAAAGCTGCTAATACGGTGTGGATAAACCACTC-AATAG
*
160713209 TGCAGATAAAAGCTGCTCAA-ACGGTGTGGATAAACCACTCAATGG
1 TGCAGATAAAAGCTGCT-AATACGGTGTGGATAAACCACTCAATAG
160713254 TGCAGATAAA
1 TGCAGATAAA
160713264 CTGTACTACT
Statistics
Matches: 80, Mismatches: 18, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
44 10 0.12
45 34 0.43
46 34 0.43
47 2 0.03
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (45 bp):
TGCAGATAAAAGCTGCTAATACGGTGTGGATAAACCACTCAATAG
Found at i:160715165 original size:21 final size:21
Alignment explanation
Indices: 160715139--160715180 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
160715129 ATTAAGATAA
160715139 TAATAC-CTAATTATATTATTT
1 TAATACTCTAATTA-ATTATTT
*
160715160 TAATACTTTAATTAATTATTT
1 TAATACTCTAATTAATTATTT
160715181 ATGACCCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (21 bp):
TAATACTCTAATTAATTATTT
Found at i:160715353 original size:30 final size:32
Alignment explanation
Indices: 160715317--160715377 Score: 90
Period size: 30 Copynumber: 1.9 Consensus size: 32
160715307 GTCATTTCAC
160715317 TATAGTATCGTGA-T-CTCTCCCTAATTATAT
1 TATAGTATCGTGACTGCTCTCCCTAATTATAT
160715347 TATAGTATCGTGACTGAGCTCTCCCTAATTA
1 TATAGTATCGTGACT--GCTCTCCCTAATTA
160715378 CATACCATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 13 0.48
31 1 0.04
34 13 0.48
ACGTcount: A:0.26, C:0.21, G:0.13, T:0.39
Consensus pattern (32 bp):
TATAGTATCGTGACTGCTCTCCCTAATTATAT
Found at i:160726466 original size:39 final size:39
Alignment explanation
Indices: 160726412--160726602 Score: 310
Period size: 39 Copynumber: 4.9 Consensus size: 39
160726402 AATGTTCGAG
160726412 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
160726451 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
160726490 TGATATCCGGGCTAAGCCTGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
160726529 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
160726568 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
160726603 GGTTACCATA
Statistics
Matches: 141, Mismatches: 10, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 124 0.88
40 17 0.12
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:160731661 original size:174 final size:170
Alignment explanation
Indices: 160731337--160731678 Score: 499
Period size: 174 Copynumber: 2.0 Consensus size: 170
160731327 CTCACATGTA
* *
160731337 TCATTCCATCACTTATAATCATTTCGTAACGTTTCAAATTCATATACTATTTTTTCCTCCTTCTC
1 TCATTCCATCACTTATAATCATTTCGTAACATTTCAAATTCATATAATATTTTTTCCTCCTTCTC
* *
160731402 CTCCCCATTCCTCACCCTTTATGTGTAAATATATTATAATTTTAGCTTTTAGTACGTCATGCTTA
66 CTCCCCATTCATCACCCTTTATGTGTAAATATATTATAATTTTAGCTTTTAGTACGGCATGCTTA
*
160731467 TATGTAACATTAAATATAATTCCATTACTTACTTATGTTT
131 TATGTAACAGTAAATATAATTCCATTACTTACTTATGTTT
** *
160731507 TCATTCCATCACCTT-TAATCATTTCGTAACATTTCAAATTGTTCTAATATTTCTTTTTCCTCC-
1 TCATTCCATCA-CTTATAATCATTTCGTAACATTTCAAATTCATATAATA--T-TTTTTCCTCCT
* * * *
160731570 TCTTCCTCTCCATTCATCATCCTTTATGTGTATATATATTATAACTTTTAGCTTTTAGTATGGCA
62 TC-TCCTCCCCATTCATCACCCTTTATGTGTAAATATATTATAA-TTTTAGCTTTTAGTACGGCA
*
160731635 TGCTTATATGTAACAGTAACTATAATTCCATTACTTACTTATGT
125 TGCTTATATGTAACAGTAAATATAATTCCATTACTTACTTATGT
160731679 GCTCATATCA
Statistics
Matches: 153, Mismatches: 13, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
170 40 0.26
171 3 0.02
172 3 0.02
173 47 0.31
174 60 0.39
ACGTcount: A:0.26, C:0.21, G:0.06, T:0.46
Consensus pattern (170 bp):
TCATTCCATCACTTATAATCATTTCGTAACATTTCAAATTCATATAATATTTTTTCCTCCTTCTC
CTCCCCATTCATCACCCTTTATGTGTAAATATATTATAATTTTAGCTTTTAGTACGGCATGCTTA
TATGTAACAGTAAATATAATTCCATTACTTACTTATGTTT
Found at i:160739783 original size:21 final size:21
Alignment explanation
Indices: 160739754--160739800 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
160739744 TTACCTCAGA
160739754 ATTC-AGAGCTCATACAGAAG
1 ATTCTAGAGCTCATACAGAAG
160739774 ATTCTAGAGCTCATACAGAAG
1 ATTCTAGAGCTCATACAGAAG
160739795 ATTCTA
1 ATTCTA
160739801 CGCGAGGCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.15
21 22 0.85
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (21 bp):
ATTCTAGAGCTCATACAGAAG
Found at i:160747915 original size:39 final size:40
Alignment explanation
Indices: 160747798--160747975 Score: 211
Period size: 40 Copynumber: 4.5 Consensus size: 40
160747788 GCTCGATTGT
* * * *
160747798 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGC
*
160747838 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* *
160747878 CTTCGGGACTTAACCCGG-TTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
160747917 CTTCGGGA-TT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGGATTTAGTAAC-TCGCACAAATGC
160747957 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
160747976 CACCATTCGA
Statistics
Matches: 119, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
38 7 0.06
39 35 0.29
40 66 0.55
41 10 0.08
42 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:160747951 original size:79 final size:80
Alignment explanation
Indices: 160747798--160747974 Score: 234
Period size: 79 Copynumber: 2.2 Consensus size: 80
160747788 GCTCGATTGT
* * * *
160747798 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAGT
* *
160747863 AACTCGCACAAATGC
66 AACTAGCACAAAAGC
* *
160747878 CTTCGGGACTTAACCCGGTT-TGGTAACTCGCACAAATGCCTTCGGG-ATT-GACCCGGATTTAG
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAG-CCCGGATTTAG
*
160747940 TCACTTAGCACAAAAGC
65 TAAC-TAGCACAAAAGC
160747957 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
160747975 ACACCATTCG
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
77 1 0.01
78 17 0.20
79 49 0.58
80 18 0.21
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAGT
AACTAGCACAAAAGC
Found at i:160755882 original size:39 final size:40
Alignment explanation
Indices: 160755729--160755946 Score: 162
Period size: 40 Copynumber: 5.5 Consensus size: 40
160755719 GAATCACGTA
* ** * *
160755729 CCTTC-GGAATTTA-ACCGGATATAGCGACTCGCTCGATTG
1 CCTTCGGGAA-TTAGACCGGATTTAGTAACTCGCACGAATG
* * * *
160755768 TCTTCGGGACA-TAGCCCGG-TTATAGTGATTCGCAC-AATTG
1 CCTTCGGGA-ATTAGACCGGATT-TAGTAACTCGCACGAA-TG
*
160755808 CCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATG
1 CCTTCGGGAATTAGACCGGATTTAGTAACTCGCACGAATG
* * *
160755848 CCTTCGGGACTTA-ACCGGTTTTGGTAACTCGCACGAATG
1 CCTTCGGGAATTAGACCGGATTTAGTAACTCGCACGAATG
* * * * *
160755887 CCTTCGGGAATT-GACCCGATTTAGTCACTTAGCACAAAAG
1 CCTTCGGGAATTAGACCGGATTTAGTAAC-TCGCACGAATG
* *
160755927 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGAATTAGACCGGA
160755947 CACCATTCGA
Statistics
Matches: 143, Mismatches: 25, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
39 54 0.38
40 79 0.55
41 10 0.07
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGAATTAGACCGGATTTAGTAACTCGCACGAATG
Found at i:160760747 original size:40 final size:40
Alignment explanation
Indices: 160760673--160760891 Score: 336
Period size: 40 Copynumber: 5.5 Consensus size: 40
160760663 AACCCAAGTA
* * *
160760673 CCTTTGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
160760712 CCTTCGGGACATAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
160760752 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
160760792 CCTTCGGGGCTTAGCCCGGATATAGTCACTAGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
**
160760831 CCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
160760871 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
160760892 GTCATCTGAA
Statistics
Matches: 168, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 48 0.29
40 117 0.70
41 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:160760870 original size:79 final size:80
Alignment explanation
Indices: 160760673--160760891 Score: 336
Period size: 79 Copynumber: 2.8 Consensus size: 80
160760663 AACCCAAGTA
* * * *
160760673 CCTTTGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
160760736 GTCAATAGCACAAATG
65 GTCAATAGCACAAATG
* *
160760752 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
160760817 TCACTAGCAC-AATG
66 TCAATAGCACAAATG
*
160760831 CCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGAT
160760892 GTCATCTGAA
Statistics
Matches: 128, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
79 74 0.58
80 53 0.41
81 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCAATAGCACAAATG
Found at i:160762636 original size:37 final size:37
Alignment explanation
Indices: 160762583--160762704 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
160762573 TATAAAAGAA
*
160762583 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
160762620 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
160762657 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
160762694 GTCTCACCCGG
1 GTCTTACCCGG
160762705 AACATATTCC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:160762861 original size:49 final size:49
Alignment explanation
Indices: 160762806--160763034 Score: 185
Period size: 49 Copynumber: 4.4 Consensus size: 49
160762796 TTTTACATTA
160762806 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * * * *
160762855 GCCATTAGGTGAATCGGCCATTAGGC-CTTATCACATATACATACACTTTCACATTCACCACATC
1 GCCA-T---T--A--GGCC-TTA-TCACATAT-ACATACACTTTCACATT--CA--C-C-ACATC
160762919 G
49 G
*
160762920 GCCATTAGGCCTCATCAC-TATACAT-CACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
160762967 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
160763016 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
160763035 CACATATGTA
Statistics
Matches: 143, Mismatches: 17, Indels: 40
0.71 0.09 0.20
Matches are distributed among these distances:
47 23 0.16
48 8 0.06
49 42 0.29
50 1 0.01
51 2 0.01
53 9 0.06
54 4 0.03
55 5 0.03
56 3 0.02
57 8 0.06
58 7 0.05
59 15 0.10
61 3 0.02
63 1 0.01
64 2 0.01
65 10 0.07
ACGTcount: A:0.28, C:0.32, G:0.11, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:160762881 original size:65 final size:65
Alignment explanation
Indices: 160762806--160762928 Score: 246
Period size: 65 Copynumber: 1.9 Consensus size: 65
160762796 TTTTACATTA
160762806 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGTGAATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGTGAATCG
160762871 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGG
160762929 CCTCATCACT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 58 1.00
ACGTcount: A:0.29, C:0.30, G:0.13, T:0.28
Consensus pattern (65 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGTGAATCG
Found at i:160762965 original size:47 final size:49
Alignment explanation
Indices: 160762867--160763034 Score: 277
Period size: 49 Copynumber: 3.5 Consensus size: 49
160762857 CATTAGGTGA
160762867 ATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCAC
1 ATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCAC
*
160762916 ATCGGCCATTAGGCCTCATCAC-TATACAT-CACTTTCACATTCACCAC
1 ATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCAC
* *
160762963 ATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGC
1 ATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCAC
* *
160763012 ATTGGCCATTCGGCCTTATCACA
1 ATCGGCCATTAGGCCTTATCACA
160763035 CACATATGTA
Statistics
Matches: 111, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
47 39 0.35
48 14 0.13
49 58 0.52
ACGTcount: A:0.28, C:0.33, G:0.10, T:0.29
Consensus pattern (49 bp):
ATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCAC
Found at i:160766442 original size:29 final size:29
Alignment explanation
Indices: 160766406--160766704 Score: 497
Period size: 29 Copynumber: 10.6 Consensus size: 29
160766396 TGTTGAAAAA
* *
160766406 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
* *
160766435 CTCGCACACGTAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
160766464 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
160766493 CTCGCACACATAGTGCCTCGA-T--T-A-
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
160766517 CT-GCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
160766545 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
160766574 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
160766603 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
160766632 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
160766661 CTCGCACACATAGTGCCT--ATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
160766688 CTCGCACACATAGTGCC
1 CTCGCACACATAGTGCC
160766705 CTATTCATTC
Statistics
Matches: 258, Mismatches: 6, Indels: 14
0.93 0.02 0.05
Matches are distributed among these distances:
23 17 0.07
24 3 0.01
25 1 0.00
26 2 0.01
27 27 0.10
28 3 0.01
29 205 0.79
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACTGAT
Found at i:160766656 original size:139 final size:142
Alignment explanation
Indices: 160766406--160766704 Score: 500
Period size: 139 Copynumber: 2.1 Consensus size: 142
160766396 TGTTGAAAAA
* *
160766406 CTCGCACACACAGTGCCTCAATTACTGATCTCGCACACGTAGTGCCTCAATTACTGATCTCGCAC
1 CTCGCACACATAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCAATTACTGATCTCGCAC
160766471 ACATAGTGCCTCGATTACTGATCTCGCACACATAGTGCCTCGA-T-T-A-CT-GCACACATAGTG
66 ACATAGTGCCTCGATTACTGATCTCGCACACATAGTGCCTCGATTATGATCTCGCACACATAGTG
160766531 CCTCAATTACTGAT
131 CCT--ATTACTGAT
* *
160766545 CTCGCACACATAGTGCCTCGATTACTGATCTCGCACACATAGTGCCTCGATTACTGATCTCGCAC
1 CTCGCACACATAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCAATTACTGATCTCGCAC
160766610 ACATAGTGCCTCGATTACTGATCTCGCACACATAGTGCCTCGATTACTGATCTCGCACACATAGT
66 ACATAGTGCCTCGATTACTGATCTCGCACACATAGTGCCTCGATTA-TGATCTCGCACACATAGT
160766675 GCCTATTACTGAT
130 GCCTATTACTGAT
160766688 CTCGCACACATAGTGCC
1 CTCGCACACATAGTGCC
160766705 CTATTCATTC
Statistics
Matches: 150, Mismatches: 4, Indels: 8
0.93 0.02 0.05
Matches are distributed among these distances:
139 104 0.69
140 1 0.01
142 1 0.01
143 27 0.18
144 2 0.01
145 15 0.10
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (142 bp):
CTCGCACACATAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCAATTACTGATCTCGCAC
ACATAGTGCCTCGATTACTGATCTCGCACACATAGTGCCTCGATTATGATCTCGCACACATAGTG
CCTATTACTGAT
Found at i:160766936 original size:40 final size:40
Alignment explanation
Indices: 160766879--160767081 Score: 293
Period size: 40 Copynumber: 5.1 Consensus size: 40
160766869 CGAATACACG
* *
160766879 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
160766919 TCACTAGCACGAATGCTCTTCGGGACTTTGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
160766959 TCACTAGCATGAATGCTCTTC-GGACTTTG-CCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
160766997 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
160767037 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
160767077 TCACT
1 TCACT
160767082 CTCAATTCTC
Statistics
Matches: 153, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
38 30 0.20
39 14 0.09
40 109 0.71
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.28
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:160767011 original size:78 final size:79
Alignment explanation
Indices: 160766879--160767081 Score: 291
Period size: 78 Copynumber: 2.6 Consensus size: 79
160766869 CGAATACACG
* * *
160766879 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAA
*
160766944 CTTTGCCCGGATACA
65 CTTAGCCCGGATACA
* *
160766959 TCACTAGCATGAATGCTCTTCGGACTTTG-CCGGATACATCACTAGCATGAATGCTCTTCGGAAC
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* *
160767023 TTAGTCCGGATATA
66 TTAGCCCGGATACA
* *
160767037 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TCACTAGCATGAATGCTCTTCGG-ACTTAGCCCGGATACATCACT
160767082 CTCAATTCTC
Statistics
Matches: 111, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
78 67 0.60
79 11 0.10
80 33 0.30
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.28
Consensus pattern (79 bp):
TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
TTAGCCCGGATACA
Found at i:160768947 original size:37 final size:37
Alignment explanation
Indices: 160768894--160769015 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
160768884 TATAAAAGAA
*
160768894 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
160768931 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
160768968 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
160769005 GTCTCACCCGG
1 GTCTTACCCGG
160769016 AACATATTCC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:160769172 original size:49 final size:49
Alignment explanation
Indices: 160769117--160769330 Score: 349
Period size: 49 Copynumber: 4.4 Consensus size: 49
160769107 TTTTACATTA
160769117 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
160769166 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
160769215 GCCATTAGGCCTCATCACATATACATCCACTTTC-CATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * *
160769263 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
160769312 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
160769331 CACATATGTA
Statistics
Matches: 156, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
48 46 0.29
49 110 0.71
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:160769274 original size:97 final size:98
Alignment explanation
Indices: 160769117--160769330 Score: 349
Period size: 97 Copynumber: 2.2 Consensus size: 98
160769107 TTTTACATTA
*
160769117 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
160769182 ACATATACATACACTTTCACATTCACCACATCG
66 ACATATACATACACTTTCACATTCACCACATCG
* * *
160769215 GCCATTAGGCCTCATCACATATACATCCACTTTC-CATTCATCACATCGGCCATTAGGCCTCATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
* * *
160769279 ACATATACATACACTTTCACATTCATCGCATTG
66 ACATATACATACACTTTCACATTCACCACATCG
*
160769312 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
160769331 CACATATGTA
Statistics
Matches: 107, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
97 75 0.70
98 32 0.30
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (98 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
ACATATACATACACTTTCACATTCACCACATCG
Found at i:160775513 original size:55 final size:55
Alignment explanation
Indices: 160775440--160775550 Score: 204
Period size: 55 Copynumber: 2.0 Consensus size: 55
160775430 ATGATTTCCA
160775440 TGGAATAACCAGCATTTAGACATACATAACACCAAACATGTCCTTGATTAGCCAT
1 TGGAATAACCAGCATTTAGACATACATAACACCAAACATGTCCTTGATTAGCCAT
* *
160775495 TGGAATAACTAGCATTTAGCCATACATAACACCAAACATGTCCTTGATTAGCCAT
1 TGGAATAACCAGCATTTAGACATACATAACACCAAACATGTCCTTGATTAGCCAT
160775550 T
1 T
160775551 CCAATAGTTA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (55 bp):
TGGAATAACCAGCATTTAGACATACATAACACCAAACATGTCCTTGATTAGCCAT
Found at i:160778456 original size:40 final size:40
Alignment explanation
Indices: 160778371--160778521 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
160778361 AATTGAATGA
* * *
160778371 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
160778411 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
160778452 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
160778491 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
160778522 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:160778535 original size:40 final size:40
Alignment explanation
Indices: 160778407--160778537 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
160778397 TATGCTGGAA
* * *
160778407 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
160778447 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
160778487 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
160778527 ATTATATCCGG
1 ATTATATCCGG
160778538 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:160786455 original size:42 final size:36
Alignment explanation
Indices: 160786401--160786508 Score: 119
Period size: 36 Copynumber: 2.8 Consensus size: 36
160786391 TGGAAATTAT
*
160786401 ATCCGGGTTAAGACCCGAAGGCAATTGTGCGCTAGTGGCTAC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCG--AGT---T-C
*
160786443 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTT
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTC
*
160786479 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC
160786509 ACGTGATTAT
Statistics
Matches: 61, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
36 26 0.43
37 3 0.05
40 3 0.05
41 3 0.05
42 26 0.43
ACGTcount: A:0.23, C:0.25, G:0.31, T:0.21
Consensus pattern (36 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTC
Found at i:160795555 original size:40 final size:40
Alignment explanation
Indices: 160795453--160795636 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
160795443 AAATTGAATG
* * * * * *
160795453 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
160795493 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
160795533 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
160795573 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
160795613 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
160795637 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 3 0.02
40 116 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:160798440 original size:19 final size:19
Alignment explanation
Indices: 160798418--160798455 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
160798408 GTTTTCATCA
*
160798418 TTTTCTTTCTCC-TTTCTT
1 TTTTTTTTCTCCATTTCTT
*
160798436 TTTTTTTTTTCCATTTCTT
1 TTTTTTTTCTCCATTTCTT
160798455 T
1 T
160798456 ATTACTAACT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTTTTCTCCATTTCTT
Found at i:160806726 original size:40 final size:40
Alignment explanation
Indices: 160806604--160806751 Score: 161
Period size: 40 Copynumber: 3.7 Consensus size: 40
160806594 TGAATGATAC
* * * *
160806604 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATTATAT
* * * *
160806644 CTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATTATAT
** *
160806684 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATTATAT
* * * *
160806724 CCGAGTTAAGACCCAAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
160806752 TTGTGGTTAT
Statistics
Matches: 90, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATTATAT
Found at i:160806737 original size:80 final size:80
Alignment explanation
Indices: 160806604--160806771 Score: 187
Period size: 80 Copynumber: 2.1 Consensus size: 80
160806594 TGAATGATAC
* * ** * * * *
160806604 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCTGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGAGCTAAGACCCAAAGGCAATT-
*
160806668 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* * *
160806684 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGAGTTAAGACCCAAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGAGCTAAGACCCAAAGGCAATTG
**
160806749 TGCTTGTGGTTATAT
66 TGCGAGTGGTTATAT
160806764 CC-GGCTAA
1 CCGGGCTAA
160806772 ATTCCGAAGA
Statistics
Matches: 73, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
79 6 0.08
80 64 0.88
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGAGCTAAGACCCAAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:160814858 original size:40 final size:40
Alignment explanation
Indices: 160814803--160814970 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
160814793 TGAATGATAC
* *
160814803 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
160814843 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
160814883 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
160814923 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
160814963 CC-GGCTAA
1 CCGGGCTAA
160814971 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:160816652 original size:40 final size:39
Alignment explanation
Indices: 160816617--160816799 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
160816607 TACTCGTTCG
*
160816617 AATGCCTTCGGGCCATAGCCCGGTTATAGTAACTCGCACA
1 AATGCCTTCGGG-CTTAGCCCGGTTATAGTAACTCGCACA
* * *
160816657 AATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCCCACC
1 AATGCCTTCGGG-CTTAGCCCGG-TTATAGTAACTCGCACA
*
160816697 AATGCCTTCGGGCTTAGCCCGG-GATTAGTAACTCGCACA
1 AATGCCTTCGGGCTTAGCCCGGTTA-TAGTAACTCGCACA
* * * *
160816736 AATGCCTTTGGATCTTAGTCCGGATT-TAGTAACTTAGCACA
1 AATGCCTTCGG-GCTTAGCCCGG-TTATAGTAAC-TCGCACA
160816777 AA-GCCTTCGGGACTTAGCCCGGT
1 AATGCCTTCGGG-CTTAGCCCGGT
160816800 CATCATTTGA
Statistics
Matches: 118, Mismatches: 17, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
39 32 0.27
40 76 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGCTTAGCCCGGTTATAGTAACTCGCACA
Found at i:160816716 original size:79 final size:81
Alignment explanation
Indices: 160816617--160816799 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
160816607 TACTCGTTCG
* * *
160816617 AATGCCTTCGGGCCATAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGTGATTAGTAACTCGCACAAATGCCTT-GGGATCTTAACCCGG
*
160816680 ATTTAGTAAC-TCCCACC
65 ATTTAGTAACTTACCA-C
* **
160816697 AATGCCTTCGGG-CTTAGCCCGG-GATTAGTAACTCGCACAAATGCCTTTGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGTGATTAGTAACTCGCACAAATGCCTTGGGATCTTAACCCGGA
*
160816760 TTTAGTAACTTAGCAC
66 TTTAGTAACTTACCAC
*
160816776 AAAGCCTTCGGGACTTAGCCCGGT
1 AATGCCTTCGGGACTTAGCCCGGT
160816800 CATCATTTGA
Statistics
Matches: 90, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
78 4 0.04
79 61 0.68
80 25 0.28
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGTGATTAGTAACTCGCACAAATGCCTTGGGATCTTAACCCGGA
TTTAGTAACTTACCAC
Found at i:160821601 original size:30 final size:32
Alignment explanation
Indices: 160821566--160821630 Score: 116
Period size: 30 Copynumber: 2.1 Consensus size: 32
160821556 GATTTGGGGC
160821566 AAAAGTGTAAATA-TGCAAAAGTTTA-GGGTA
1 AAAAGTGTAAATATTGCAAAAGTTTAGGGGTA
160821596 AAAAGTGTAAATATTGCAAAAGTTTAGGGGTA
1 AAAAGTGTAAATATTGCAAAAGTTTAGGGGTA
160821628 AAA
1 AAA
160821631 TTGTAATTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 13 0.39
31 12 0.36
32 8 0.24
ACGTcount: A:0.48, C:0.03, G:0.23, T:0.26
Consensus pattern (32 bp):
AAAAGTGTAAATATTGCAAAAGTTTAGGGGTA
Found at i:160821636 original size:31 final size:30
Alignment explanation
Indices: 160821561--160821636 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 30
160821551 TCCTAGATTT
*
160821561 GGGGCAAAAGTGTAAATATGCAAAAGTTTA
1 GGGGTAAAAGTGTAAATATGCAAAAGTTTA
160821591 -GGGTAAAAAGTGTAAATATTGCAAAAGTTTA
1 GGGGT-AAAAGTGTAAATA-TGCAAAAGTTTA
*
160821622 GGGGTAAAATTGTAA
1 GGGGTAAAAGTGTAA
160821637 TTTTGCTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
29 3 0.07
30 13 0.32
31 21 0.51
32 4 0.10
ACGTcount: A:0.43, C:0.04, G:0.26, T:0.26
Consensus pattern (30 bp):
GGGGTAAAAGTGTAAATATGCAAAAGTTTA
Done.