Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 518 of 770
Found at i:160822122 original size:46 final size:46
Alignment explanation
Indices: 160822072--160822197 Score: 152
Period size: 47 Copynumber: 2.7 Consensus size: 46
160822062 GTTGAGCATC
160822072 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAA-T-G-TT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA--GATG-GAACTAGATT
* * *
160822118 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAGGAATT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGGAACTA-G-ATT
160822165 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG
160822198 GGGCGGGTTA
Statistics
Matches: 69, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 27 0.39
47 29 0.42
48 3 0.04
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGGAACTAGATT
Found at i:160830410 original size:40 final size:40
Alignment explanation
Indices: 160830351--160830492 Score: 117
Period size: 40 Copynumber: 3.5 Consensus size: 40
160830341 AAATTGAATG
* *
160830351 ATATCCGGGCTAA-ACCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGA-CCCGAAGACAATTATGCTAGAAACT
* * * ***
160830391 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
160830431 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
160830471 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
160830493 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.03
40 82 0.95
41 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:160830516 original size:40 final size:39
Alignment explanation
Indices: 160830389--160830518 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
160830379 ATGCTGGAAA
* * *
160830389 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC
* *
160830430 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C
*
160830468 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC
160830509 TTATATCCGG
1 TTATATCCGG
160830519 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC
Found at i:160831638 original size:14 final size:14
Alignment explanation
Indices: 160831621--160831650 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
160831611 ATGGGTGATT
160831621 TAACTAATAAACTG
1 TAACTAATAAACTG
160831635 TAACTAATAAACTG
1 TAACTAATAAACTG
160831649 TA
1 TA
160831651 CCAATTGGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.07, T:0.30
Consensus pattern (14 bp):
TAACTAATAAACTG
Found at i:160834812 original size:59 final size:58
Alignment explanation
Indices: 160834741--160834873 Score: 151
Period size: 59 Copynumber: 2.3 Consensus size: 58
160834731 GATTTAAGCC
* * * * *
160834741 CGCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATA-TATTTCCAGCA
* * * **
160834800 TGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA
160834858 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
160834874 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
58 25 0.40
59 36 0.58
60 1 0.02
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA
Found at i:160834831 original size:29 final size:29
Alignment explanation
Indices: 160834791--160834873 Score: 157
Period size: 29 Copynumber: 2.9 Consensus size: 29
160834781 TGCCGTATTT
160834791 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
160834820 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
160834849 TTTCCAGCACGCACACTTAGTGCCA
1 TTTCCAGCATGCACACTTAGTGCCA
160834874 ATCTCGTCAC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:160839033 original size:43 final size:43
Alignment explanation
Indices: 160838972--160839057 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
160838962 TTTTACTAGG
160838972 ATCAACCCGTATACCATCACCTGAAACAATATGACCCAAAAAT
1 ATCAACCCGTATACCATCACCTGAAACAATATGACCCAAAAAT
160839015 ATCAACCCGTATACCATCACCTGAAACAATATGACCCAAAAAT
1 ATCAACCCGTATACCATCACCTGAAACAATATGACCCAAAAAT
160839058 CTAACTTCCC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.44, C:0.30, G:0.07, T:0.19
Consensus pattern (43 bp):
ATCAACCCGTATACCATCACCTGAAACAATATGACCCAAAAAT
Found at i:160843080 original size:93 final size:93
Alignment explanation
Indices: 160842966--160843136 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
160842956 GCCCCTAAGT
* * *
160842966 GAACTCGGACTCAACTTAACGAGCTCAGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
160843031 CGAGTTCGGATGCCTAGTTATATCGCAC
66 CGAGTTCGGATGCCTAGTTATATCGCAC
* *
160843059 GAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
160843124 CGAGTTCGGATGC
66 CGAGTTCGGATGC
160843137 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTATATCGCAC
Found at i:160843131 original size:46 final size:46
Alignment explanation
Indices: 160842961--160843132 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
160842951 AACCCGCCCC
* * * * *
160842961 TAAGTGAACTCGGACTCAACTTAACGAGCTCAGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCA
* *
160843007 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGC-CTAGT-TA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGC-A-TCCA
* *
160843051 TATCGCACGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCA
1 TA-AG--TGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCA
160843100 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
160843133 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 5 0.05
45 4 0.04
46 57 0.54
47 26 0.25
48 4 0.04
49 7 0.07
50 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCA
Found at i:160843152 original size:46 final size:44
Alignment explanation
Indices: 160843009--160843152 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
160842999 TGCATCCATA
*
160843009 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-TATCGC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-C
* * * *
160843057 A-CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGC-CAACCATCC
160843102 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCC
160843147 TAGTGA
1 -AGTGA
160843153 CATGTCACTT
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.11
45 3 0.04
46 31 0.39
47 28 0.35
48 3 0.04
49 4 0.05
50 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCC
Found at i:160843589 original size:30 final size:30
Alignment explanation
Indices: 160843555--160843614 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
160843545 ATTTAATACG
160843555 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
160843585 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
160843615 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:160853807 original size:20 final size:20
Alignment explanation
Indices: 160853782--160853824 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
160853772 CTATCCCGAC
160853782 GTTGGATACGGGTGAGGGGT
1 GTTGGATACGGGTGAGGGGT
*
160853802 GTTGGATATGGGTGAGGGGT
1 GTTGGATACGGGTGAGGGGT
160853822 GTT
1 GTT
160853825 ACATAAAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.14, C:0.02, G:0.53, T:0.30
Consensus pattern (20 bp):
GTTGGATACGGGTGAGGGGT
Found at i:160865317 original size:126 final size:125
Alignment explanation
Indices: 160864931--160865324 Score: 517
Period size: 127 Copynumber: 3.1 Consensus size: 125
160864921 AAGGCCAAAT
* * * *
160864931 AGGAACTACTGTAGAAAAGAGCATCCGCGTGGGAACTTTTTTCAGTAATTTTGCTGACAGTGCAT
1 AGGAACTACTGTAGAAAAGAACGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCAT
* * *
160864996 CCTACTTGAAGCATTGTTGACACTATTTTTTCATAACCGTCTTCTC-AAATT-ATTTTTC
66 CCTACTTGAAGCGTTTTTGACACTATTTTTTCATAACTGTCTTCTCAAAATTAATTTTTC
* *
160865054 AGGAACTATTGTAGAAAAAGAGA-GTCCACGTAGGAG-TTTTCTTCAGTAATTTTGCTGACAGTG
1 AGGAACTACTGTAG-AAAAGA-ACGTCCACGTGGGAGCTTTT-TTCAGTAATTTTGCTGACAGTG
* * * *
160865117 CATCCTGCTTGAAGTGTTTTTTGACACTATTTTTTTAGAACTGTCTTCTCAAAATTAATTTTTC
63 CATCCTACTTGAAGCG-TTTTTGACACTATTTTTTCATAACTGTCTTCTCAAAATTAATTTTTC
* * *
160865181 AGGAACTACTGTAGAAGAAGAACGTCCACGTGGGAGCTTCTTTCAGTAATTTTACTGATAGTGCA
1 AGGAACTACTGTAGAA-AAGAACGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
* * * *
160865246 TCTTCCTTGAAGCGTTTTTGACATTATCTTTTCATAACTGTCTTCTCAAAATTAATTTTTC
65 TCCTACTTGAAGCGTTTTTGACACTATTTTTTCATAACTGTCTTCTCAAAATTAATTTTTC
* *
160865307 TGAAACTACTGTAGAAAA
1 AGGAACTACTGTAGAAAA
160865325 AAACCAAAAT
Statistics
Matches: 235, Mismatches: 27, Indels: 16
0.85 0.10 0.06
Matches are distributed among these distances:
123 17 0.07
124 50 0.21
125 31 0.13
126 65 0.28
127 69 0.29
128 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.37
Consensus pattern (125 bp):
AGGAACTACTGTAGAAAAGAACGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCAT
CCTACTTGAAGCGTTTTTGACACTATTTTTTCATAACTGTCTTCTCAAAATTAATTTTTC
Found at i:160867554 original size:1 final size:1
Alignment explanation
Indices: 160867510--160867539 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
160867500 AACCTAACCC
*
160867510 AAAAAAAAAAAAAAAAAAAAAAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
160867540 CTTATCCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:160868392 original size:11 final size:11
Alignment explanation
Indices: 160868374--160868403 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
160868364 GTGTATATTG
160868374 TATATATTATA
1 TATATATTATA
*
160868385 TTTATATTATA
1 TATATATTATA
160868396 TATATATT
1 TATATATT
160868404 CTTAATGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATATATTATA
Found at i:160870650 original size:12 final size:12
Alignment explanation
Indices: 160870630--160870665 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
160870620 ATTCATTTAA
160870630 CATTCATGCATT
1 CATTCATGCATT
*
160870642 CATTTATGCATT
1 CATTCATGCATT
*
160870654 CATTCATTCATT
1 CATTCATGCATT
160870666 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:160877746 original size:71 final size:69
Alignment explanation
Indices: 160877552--160877815 Score: 332
Period size: 71 Copynumber: 3.7 Consensus size: 69
160877542 GAGTTAAGCC
* *
160877552 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
160877617 GAGGTAT
63 GAGGTAT
* * ** * *
160877624 TTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTAATTTTTGT-TTTAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCGGGGCACGCTG
160877688 AGGTAT
64 AGGTAT
160877694 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
160877759 AGGTAT
64 AGGTAT
* * ** * *
160877765 TTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
160877816 TTTAATTTTT
Statistics
Matches: 167, Mismatches: 20, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
69 35 0.21
70 56 0.34
71 60 0.36
72 16 0.10
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38
Consensus pattern (69 bp):
TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAG
GTAT
Found at i:160877860 original size:122 final size:124
Alignment explanation
Indices: 160877694--160877940 Score: 392
Period size: 122 Copynumber: 2.0 Consensus size: 124
160877684 GTTGAGGTAT
160877694 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
* *
160877759 AGGTATTTT-TA-GTTTATGTTTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCC
66 AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
* *
160877815 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
* * * *
160877880 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 GAGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
160877940 T
1 T
160877941 CAGGTCACGC
Statistics
Matches: 114, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
121 12 0.11
122 60 0.53
123 1 0.01
124 13 0.11
125 28 0.25
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (124 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:160877905 original size:263 final size:257
Alignment explanation
Indices: 160877385--160877977 Score: 1042
Period size: 263 Copynumber: 2.3 Consensus size: 257
160877375 TTTCAAGGAA
*
160877385 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
160877450 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
160877515 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
131 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
160877580 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
196 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
160877642 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
*
160877707 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTA---TT--T
160877772 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
126 TTA-GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
160877837 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
190 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
160877902 TTT
255 TTT
* * * * * *
160877905 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AA--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
160877970 GTTTTCAA
64 GTTTTCAA
160877978 TTTACGTTGT
Statistics
Matches: 320, Mismatches: 8, Indels: 8
0.95 0.02 0.02
Matches are distributed among these distances:
257 120 0.38
260 2 0.01
262 4 0.01
263 131 0.41
265 63 0.20
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (257 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
Found at i:160877936 original size:72 final size:71
Alignment explanation
Indices: 160877815--160878255 Score: 306
Period size: 72 Copynumber: 6.1 Consensus size: 71
160877805 GAGTTAAGCC
*
160877815 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
160877879 TGAGGTA
65 TGAGGTA
** * *
160877886 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
160877951 TGAGGTA
65 TGAGGTA
* * ** * * * * ** * *** *
160877958 TTTTCAATTTCTG-TTTT-CAATTTACGT--TGTT-CAAGA-ATCAACTCATATTGCGAGAGGTA
1 TTTTCAATTTTTGTTTTTAAAATCAAC-TCATATTGCGAGAGGTGAGTTGAGCCT-CG-G-GGCA
* * ***
160878017 GGTTGA-ACC
62 CGCTGAGGTA
** * * *
160878026 TTTT-AATTTCTACTTTTTCAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTT-TTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
160878090 CTGAGGTA
64 CTGAGGTA
* * ** *
160878098 ATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTTCAATTTTTGTT-T--TTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
160878163 GCTGAGGTA
63 GCTGAGGTA
* ** * * **
160878172 TTTTCAATTTTTATGTTTTAATTTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACAC
1 TTTTCAATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GGCAC
*
160878237 GCCGAGGTA
63 GCTGAGGTA
160878246 TTTTCAATTT
1 TTTTCAATTT
160878256 CCGTTTTTCA
Statistics
Matches: 271, Mismatches: 77, Indels: 41
0.70 0.20 0.11
Matches are distributed among these distances:
66 5 0.02
67 10 0.04
68 8 0.03
69 13 0.05
70 6 0.02
71 15 0.06
72 110 0.41
73 16 0.06
74 87 0.32
75 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.37
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
GAGGTA
Found at i:160878238 original size:74 final size:74
Alignment explanation
Indices: 160878045--160878256 Score: 259
Period size: 74 Copynumber: 2.9 Consensus size: 74
160878035 CTACTTTTTC
* *
160878045 AAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
160878110 GTTGTCAAA
66 GTTGTCAAA
* * *
160878119 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTT-T
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
***
160878183 -TATGT-TTT
66 GT-TGTCAAA
** * * *
160878191 AATTTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATTT
160878256 C
64 C
160878257 CGTTTTTCAA
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
72 35 0.30
73 4 0.03
74 79 0.67
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTGTCAAA
Found at i:160878265 original size:14 final size:14
Alignment explanation
Indices: 160878246--160878280 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
160878236 CGCCGAGGTA
160878246 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
160878260 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
160878274 CTTTCAA
1 TTTTCAA
160878281 AAAAAATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:160878386 original size:74 final size:77
Alignment explanation
Indices: 160878261--160878945 Score: 337
Period size: 75 Copynumber: 8.8 Consensus size: 77
160878251 AATTTCCGTT
* *
160878261 TTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-AC
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAC
*
160878325 ACGCTGAGGTAA
66 ACGCCGAGGTAA
* *
160878337 TTTCAATTTCTGT-TGTC-AAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCA
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CA
*
160878400 CACGCCGAGGTAT
65 CACGCCGAGGTAA
* * * * * * *
160878413 TTTCAATTTCCGTTTTTCAATTTTTGCCTTTCAAAAA--AA-TCAACTCATAT-TGCGAGAGGTG
1 TTTCAATTTCTGTCTGTCAA-----------AAAAAATCAACTC-A-T-AT-TGCGAGA--GGCG
*
160878474 AGTTGAGCCTCAGG-ACACGCTGAGGTAA
49 AGTTGAGCCTCAGGCACACGCCGAGGTAA
* * * *
160878502 TTTCAATTTCTGT-TGTC-AAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAG-CTCAGATCA
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG-GCA
*
160878564 CACGTCGAGGTATTTTCAA
65 CACGCCGAGG-----T-AA
* * ** *
160878583 TTTCCATTTTTCAATTTCTGCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTT-CA-ATTTC--TGTCTG--TCAAAAAAAA---TCAACTCATATTGCGAGAGGCGAGTTGAGC
* *
160878648 CTC-GGGACACGCTGAGGTAA
57 CTCAGGCACACGCCGAGGTAA
* * *** *
160878668 TTTCAATTTCTGT-TTTC---AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-AC
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAC
** *
160878728 ACGTTGAGGTAT
66 ACGCCGAGGTAA
* * * * *
160878740 TTTCAATTTCTGT-TTTC--AAAAAATCAACTTATATTGCGAGAGGTGAGTTGA-CCT-TGGCTC
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAC
* *
160878800 ATGCGCTGAGCT-A
66 A--CGCCGAGGTAA
* * * * *
160878813 TTTCAATTTCTATCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG-GCA
* * *
160878877 CACACTGAGGTATT
65 CACGCCGAGGTA-A
* * * * *
160878891 TTTCAATTTAT-T-TTTC--AAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTC
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTC
160878946 GGGTTACATG
Statistics
Matches: 484, Mismatches: 68, Indels: 115
0.73 0.10 0.17
Matches are distributed among these distances:
71 1 0.00
72 65 0.13
73 47 0.10
74 62 0.13
75 86 0.18
76 59 0.12
77 6 0.01
78 17 0.04
79 2 0.00
80 2 0.00
81 7 0.01
82 2 0.00
83 8 0.02
84 2 0.00
85 7 0.01
86 5 0.01
87 3 0.01
88 5 0.01
89 39 0.08
90 1 0.00
91 26 0.05
92 29 0.06
93 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (77 bp):
TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAC
ACGCCGAGGTAA
Found at i:160878421 original size:166 final size:165
Alignment explanation
Indices: 160878099--160878899 Score: 949
Period size: 166 Copynumber: 5.0 Consensus size: 165
160878089 GCTGAGGTAA
* * * *
160878099 TTTCAATTTCTGT-TGTCAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
* *** *
160878163 GCTGAGGTATTTTCAATTT-T-TATGT-TTTAATTTCAACTCGTATTGCGAGAGGCGAGTTGAGC
66 GCTGAGGTAATTTCAATTTCTGT-TGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGC
160878225 CTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
130 CTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
160878261 TTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
160878326 CGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGC
65 CGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGC
160878391 CTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
130 CTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
* *
160878427 TTTCAATTTTTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
* *
160878492 GCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAG-C
66 GCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGCC
* * *
160878556 TCAGATCACACGTCGAGGTATTTTCAATTTCCATT
131 TCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
*
160878591 TTTCAATTTCTG-CTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGA
1 TTTCAATTTCTGTCTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
* * ***
160878655 CACGCTGAGGTAATTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGA
63 CACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGA
* **
160878718 GCCTCAAG--ACACGTTGAGG-----T--A-------T
128 GCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
* * *
160878740 TTTCAATTTCTGT-TTTC-AAAAAATCAACTTATATTGCGAGAGGTGAGTTGA-CCT-TGGCTCA
1 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACA
* * * * * *
160878801 TGCGCTGAGCT-ATTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
65 --CGCTGAGGTAATTTCAATTTCTGT-TGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTG
* * * *
160878865 AGCTTCAGATCACACACTGAGGTATTTTTCAATTT
127 AGCCTCAGGTCACACGCCGAGGTA-TTTTCAATTT
160878900 ATTTTTCAAA
Statistics
Matches: 568, Mismatches: 42, Indels: 59
0.85 0.06 0.09
Matches are distributed among these distances:
143 2 0.00
144 5 0.01
145 46 0.08
146 12 0.02
148 35 0.06
149 17 0.03
150 9 0.02
156 2 0.00
158 2 0.00
162 13 0.02
163 18 0.03
164 136 0.24
165 115 0.20
166 156 0.27
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.33
Consensus pattern (165 bp):
TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGCC
TCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
Found at i:160878567 original size:75 final size:75
Alignment explanation
Indices: 160878427--160878586 Score: 209
Period size: 74 Copynumber: 2.1 Consensus size: 75
160878417 AATTTCCGTT
* * *
160878427 TTTCAATTTTTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GAC
1 TTTCAATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTCAGATCAC
160878490 ACGCTGAGGTAA
64 ACGCTGAGGTAA
* * *
160878502 TTTCAATTTCTGTTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCTCAGATCACAC
1 TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTCAGATCACAC
*
160878567 G-TCGAGGTAT
66 GCT-GAGGTAA
160878577 TTTCAATTTC
1 TTTCAATTTC
160878587 CATTTTTCAA
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
73 5 0.07
74 38 0.51
75 32 0.43
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (75 bp):
TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTCAGATCACAC
GCTGAGGTAA
Found at i:160878714 original size:72 final size:73
Alignment explanation
Indices: 160878612--160879111 Score: 398
Period size: 75 Copynumber: 6.5 Consensus size: 73
160878602 GCTTTCAAAA
160878612 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
160878677 CTGTTTTC
66 CTGTTTTC
* ** ** * *
160878685 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
160878749 CTGTTTTC
66 CTGTTTTC
* * ** *
160878757 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGA-CCTTGGCTCATGCGCTGAGCT-ATTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA--CGCTGAGGTAATTTCAAT
*
160878820 TTCTATCTTTC
64 TTCTGT-TTTC
* ** * *
160878831 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTCA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTA-ATTTCA
*
160878896 ATTTAT-TTTTC
62 ATTTCTGTTTTC
* * * *
160878907 AAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCT-GAGGTAATTTC--
* *
160878971 AATCTATTTTTCAAATTCTGTTTT
61 -A---A--TTTC----TGT-TTTC
* * * ** * *
160878995 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC--GCTGAGGTAATTTCAAT
160879060 TTCTGTTTTTTTTTC
64 TTCTG-----TTTTC
160879075 AAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
160879112 TTTTAATTTC
Statistics
Matches: 341, Mismatches: 50, Indels: 64
0.75 0.11 0.14
Matches are distributed among these distances:
72 70 0.21
73 41 0.12
74 18 0.05
75 78 0.23
76 14 0.04
77 3 0.01
78 13 0.04
80 13 0.04
81 30 0.09
82 4 0.01
85 1 0.00
86 3 0.01
87 1 0.00
88 51 0.15
89 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
CTGTTTTC
Found at i:160879069 original size:88 final size:88
Alignment explanation
Indices: 160878887--160879058 Score: 231
Period size: 88 Copynumber: 2.0 Consensus size: 88
160878877 CACACTGAGG
* * * *
160878887 TATTTTTCAATTTATTTTTCAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTA
1 TATTTTTCAAATTATTTTTCAAAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCA
*
160878952 CATGTCGAGGTATTTTCAAAATC
66 CATGTCGAGCTATTTTCAAAATC
* * *
160878975 TATTTTTCAAATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTC
1 TATTTTTCAAATTAT-TTTTCAAAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTC
*
160879039 ACGTG-CTGAGCTATTTTCAA
65 ACATGTC-GAGCTATTTTCAA
160879059 TTTCTGTTTT
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
87 1 0.01
88 67 0.92
89 5 0.07
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.37
Consensus pattern (88 bp):
TATTTTTCAAATTATTTTTCAAAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCA
CATGTCGAGCTATTTTCAAAATC
Found at i:160879135 original size:29 final size:30
Alignment explanation
Indices: 160879093--160879153 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 30
160879083 CAACTCATAT
160879093 TGCGAGAGGTGAGTTGAG-CTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
*
160879122 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
160879152 TG
1 TG
160879154 TTTTCAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 17 0.57
30 13 0.43
ACGTcount: A:0.20, C:0.10, G:0.30, T:0.41
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:160879273 original size:247 final size:243
Alignment explanation
Indices: 160878751--160879314 Score: 697
Period size: 247 Copynumber: 2.3 Consensus size: 243
160878741 TTCAATTTCT
* *
160878751 GTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGA-CCTTGGCTCATGCGCTGAGCTA-T
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
*
160878814 TTCAATTTC----TATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
66 TTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
*
160878875 CACACACTGAGGTATTTTTCAATTTATTTTTCAAAAAATCAACTCACATTGCGAGATGTGAGTTG
131 CACACACTGAGGTATTTTTCAATTTATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTG
* ** * * * **
160878940 AGCCTCGGGTTACATGTCGAGGTATTTTCAAAATCTATTTTTCAAATTCT
196 AACCTCCAGTCACATATCGAGG--TTTTCAAAATCTACTTTTCAAATTAA
* *
160878990 GTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
* * *
160879054 TTCAATTTCTGTTTTTTTTTCAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTA-A
66 TTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC-TTCAGA
* * * * * *
160879118 TTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTC-AAAAATCAACTCATATTGCGAG
130 --TC-AC-ACA-CTGAGGT-A-T-TTTTCAATTTAT-TTTTCAAAAAATCAACTCACATTGCGAG
* *
160879181 AGGTGAGTTGAACCTCCAGTCACATATCGA-G-TTTCAAAATCTGCTTTTCAAGTTAA
186 AGGTGAGTTGAACCTCCAGTCACATATCGAGGTTTTCAAAATCTACTTTTCAAATTAA
160879237 G-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCT-TT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
160879300 TTCAATTTCTGTTTT
66 TTCAATTTCTGTTTT
160879315 AATGTCTGTT
Statistics
Matches: 281, Mismatches: 27, Indels: 27
0.84 0.08 0.08
Matches are distributed among these distances:
238 31 0.11
239 26 0.09
240 10 0.04
244 43 0.15
245 3 0.01
246 23 0.08
247 75 0.27
248 2 0.01
249 5 0.02
250 2 0.01
251 52 0.19
252 9 0.03
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (243 bp):
GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
TTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
CACACACTGAGGTATTTTTCAATTTATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTG
AACCTCCAGTCACATATCGAGGTTTTCAAAATCTACTTTTCAAATTAA
Found at i:160883763 original size:28 final size:28
Alignment explanation
Indices: 160883728--160883786 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
160883718 CTAGGGTATA
160883728 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
160883756 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
160883784 TCG
1 TCG
160883787 TGATCTACGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.17, C:0.12, G:0.25, T:0.46
Consensus pattern (28 bp):
TCGGTAATTTTGCTCTTTAGGGGTAATT
Found at i:160885430 original size:20 final size:20
Alignment explanation
Indices: 160885407--160885444 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
160885397 CACATCCAAA
*
160885407 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
160885427 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
160885445 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:160887782 original size:46 final size:46
Alignment explanation
Indices: 160887732--160887907 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
160887722 TATTTGGGCA
160887732 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
160887778 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
160887825 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
160887871 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
160887908 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:160887887 original size:93 final size:93
Alignment explanation
Indices: 160887728--160887899 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
160887718 TGGATATTTG
* *
160887728 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
160887793 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
160887821 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
160887886 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
160887900 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:160890876 original size:15 final size:15
Alignment explanation
Indices: 160890856--160890924 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
160890846 GTATCTTGGG
160890856 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
160890871 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
160890886 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
160890901 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
160890916 TTTCTTTAT
1 TTTCTTTAT
160890925 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:160890925 original size:30 final size:30
Alignment explanation
Indices: 160890847--160890934 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
160890837 CATAGTATCG
* * * *
160890847 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
160890877 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
160890907 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
160890935 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:160893372 original size:46 final size:46
Alignment explanation
Indices: 160893319--160893494 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
160893309 TATTTGGGCA
160893319 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
160893365 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
160893412 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
160893458 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
160893495 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:160893474 original size:93 final size:93
Alignment explanation
Indices: 160893315--160893486 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
160893305 GGGATATTTG
* *
160893315 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
160893380 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
160893408 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
160893473 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
160893487 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:160900858 original size:2 final size:2
Alignment explanation
Indices: 160900851--160900883 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
160900841 TTTATTGTAA
160900851 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
160900884 GCATGGTTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:160907710 original size:46 final size:46
Alignment explanation
Indices: 160907561--160907822 Score: 214
Period size: 47 Copynumber: 5.6 Consensus size: 46
160907551 TGTGAGCTAC
* * * *
160907561 TGTAAGACATGTCTGGGACATGCATCAGCCAT-ATTATGAGAGCCAG
1 TGTAAGACATGTCTGAGACATGCATCGGCCTTGA-GATGAGAGCCAG
* * *
160907607 TGTAAGACCATGTCT-AGGACATGGCATCGGCATTGAGACGAGAGCTAG
1 TGTAAGA-CATGTCTGA-GACAT-GCATCGGCCTTGAGATGAGAGCCAG
160907655 TGTAAGACATGTCTGAGACATGCATCGGCCTTGAGATGTA-AGCCAG
1 TGTAAGACATGTCTGAGACATGCATCGGCCTTGAGATG-AGAGCCAG
* * * * * * *
160907701 TGGATGACATGTCTGGGACATGCATC-GACTACGAGATGATAGTCAG
1 TGTAAGACATGTCTGAGACATGCATCGGCCT-TGAGATGAGAGCCAG
*
160907747 TGTAAGACCATGTCT-AGAACATGGCATC-GACTTGAGAT-ATGAGCCAG
1 TGTAAGA-CATGTCTGAG-ACAT-GCATCGGCCTTGAGATGA-GAGCCAG
* *
160907794 TGTAAGACCATGTCGGGGACATGGCATCG
1 TGTAAGA-CATGTCTGAGACAT-GCATCG
160907823 ACACCTTACC
Statistics
Matches: 178, Mismatches: 24, Indels: 26
0.78 0.11 0.11
Matches are distributed among these distances:
45 4 0.02
46 68 0.38
47 70 0.39
48 35 0.20
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCTGAGACATGCATCGGCCTTGAGATGAGAGCCAG
Found at i:160915638 original size:40 final size:40
Alignment explanation
Indices: 160915591--160915735 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
160915581 ACTCGCACAA
* * * *
160915591 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
160915631 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
160915671 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
160915712 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
160915736 CATTCGAGTA
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.03
40 60 0.65
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:160923516 original size:41 final size:40
Alignment explanation
Indices: 160923389--160923533 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
160923379 CTCGCACAAG
* * * *
160923389 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
160923429 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
160923469 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
160923510 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
160923534 CATTCGAGTA
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.03
40 60 0.65
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:160927485 original size:46 final size:46
Alignment explanation
Indices: 160927435--160927610 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
160927425 TGGTTGAGCA
160927435 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
160927481 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
160927526 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
160927574 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
160927611 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:160927591 original size:93 final size:93
Alignment explanation
Indices: 160927432--160927603 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
160927422 GGATGGTTGA
* *
160927432 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
160927497 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
160927525 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
160927590 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
160927604 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:160935036 original size:46 final size:46
Alignment explanation
Indices: 160934986--160935161 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
160934976 TGGTTGAGCA
160934986 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
160935032 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
160935077 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
160935125 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
160935162 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:160935142 original size:93 final size:93
Alignment explanation
Indices: 160934983--160935154 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
160934973 GGATGGTTGA
* *
160934983 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
160935048 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
160935076 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
160935141 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
160935155 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:160937315 original size:41 final size:41
Alignment explanation
Indices: 160937262--160937414 Score: 200
Period size: 41 Copynumber: 3.8 Consensus size: 41
160937252 TTAGCGCTGA
* *
160937262 CTCAAAATCCCTTCGAGACCAAGCTCGGATTATGACATTGG
1 CTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGG
* * * * * * *
160937303 CCCGAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGG
1 CTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGG
* *
160937343 CTTAAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTAG
1 CTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGG
160937384 CTCAAAAGCCCTTCGAGACCAAGCTCGGATT
1 CTCAAAAGCCCTTCGAGACCAAGCTCGGATT
160937415 TAAACCCCGA
Statistics
Matches: 92, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 31 0.34
41 61 0.66
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (41 bp):
CTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGG
Found at i:160941133 original size:28 final size:26
Alignment explanation
Indices: 160941102--160941165 Score: 85
Period size: 26 Copynumber: 2.4 Consensus size: 26
160941092 GATTACTGAA
160941102 ATACCCTTATGCATGCAAAATT-ACCATT
1 ATACCCTTA-G-ATG-AAAATTGACCATT
*
160941130 ATACCCTTAGATGTAAATTGACCATT
1 ATACCCTTAGATGAAAATTGACCATT
160941156 ATACCCTTAG
1 ATACCCTTAG
160941166 GGTTATTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
25 5 0.15
26 19 0.56
27 1 0.03
28 9 0.26
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.33
Consensus pattern (26 bp):
ATACCCTTAGATGAAAATTGACCATT
Found at i:160941336 original size:27 final size:26
Alignment explanation
Indices: 160941300--160941382 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 26
160941290 TATTTGATCA
* *
160941300 GGTGGTTCTGCCATACATATCTATTCT
1 GGTGGCTCTGCCATA-ATATCTGTTCT
*
160941327 GGTGGCTCTGCCACAATTATCTGTATCT
1 GGTGGCTCTGCCATAA-TATCTGT-TCT
* * *
160941355 GGTGACTCTGTCATATTATCTGTTCT
1 GGTGGCTCTGCCATAATATCTGTTCT
160941381 GG
1 GG
160941383 CAGCCATGCT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
26 6 0.13
27 26 0.55
28 15 0.32
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.40
Consensus pattern (26 bp):
GGTGGCTCTGCCATAATATCTGTTCT
Found at i:160949165 original size:27 final size:28
Alignment explanation
Indices: 160949107--160949219 Score: 126
Period size: 27 Copynumber: 4.1 Consensus size: 28
160949097 AGGAAGCGTC
* * *
160949107 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCACATATTATCTGTT
*
160949135 CTGGTGGCTCTGTCACATA-TATCTGTT
1 CTGGTGGCTCTGCCACATATTATCTGTT
*
160949162 CTGGTGGTTCTGCCACA-ATTATCTGTAT
1 CTGGTGGCTCTGCCACATATTATCTGT-T
* *
160949190 CTGGTGACTCTGTCAC--ATTATCTGTT
1 CTGGTGGCTCTGCCACATATTATCTGTT
160949216 CTGG
1 CTGG
160949220 CAACGATGCT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.08
27 38 0.51
28 30 0.41
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACATATTATCTGTT
Found at i:160949192 original size:55 final size:54
Alignment explanation
Indices: 160949107--160949219 Score: 174
Period size: 55 Copynumber: 2.1 Consensus size: 54
160949097 AGGAAGCGTC
*
160949107 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGTCACAT-TATCTGTT
* *
160949162 CTGGTGGTTCTGCCAC-AATTATCTGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTGTCACATTATCTGTT
160949216 CTGG
1 CTGG
160949220 CAACGATGCT
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
54 21 0.39
55 33 0.61
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGTCACATTATCTGTT
Found at i:160949368 original size:28 final size:28
Alignment explanation
Indices: 160949327--160949415 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 28
160949317 AGGAAGCGTC
*
160949327 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCACAAATTATCTGAT
*
160949355 CTGGTGGCTCTGCCACATA-TATCT-ATT
1 CTGGTGGCTCTGCCACAAATTATCTGA-T
* *
160949382 CTGGTGGTTCTGCCAC-GATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATTATCTG-AT
160949410 CTGGTG
1 CTGGTG
160949416 ACTCCGTCAC
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
26 2 0.04
27 26 0.49
28 24 0.45
29 1 0.02
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAATTATCTGAT
Found at i:160949385 original size:27 final size:26
Alignment explanation
Indices: 160949327--160949439 Score: 102
Period size: 27 Copynumber: 4.2 Consensus size: 26
160949317 AGGAAGCGTC
*
160949327 CTGGTGGCTATGCCACAAATTATCTGA-T
1 CTGGTGGCTCTGCCAC--ATTATCT-ATT
160949355 CTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTCTGCCACAT-TATCTATT
* *
160949382 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTAT-T
* * * *
160949410 CTGGTGACTCCGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTATT
160949436 CTGG
1 CTGG
160949440 CAACGATGCT
Statistics
Matches: 74, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
26 8 0.11
27 36 0.49
28 30 0.41
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTATT
Found at i:160949410 original size:220 final size:220
Alignment explanation
Indices: 160949028--160949468 Score: 837
Period size: 220 Copynumber: 2.0 Consensus size: 220
160949018 AAAAGTATGA
160949028 TGACCTAATTCTGTGTGATGTATGCCATGATTGTGAATCTGTTGCATGGGGACATGGGTTATATT
1 TGACCTAATTCTGTGTGATGTATGCCATGATTGTGAATCTGTTGCATGGGGACATGGGTTATATT
*
160949093 ATAGAGGAAGCGTCCTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGTCACATATATC
66 ATAGAGGAAGCGTCCTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATC
* *
160949158 TGTTCTGGTGGTTCTGCCACAATTATCTGTATCTGGTGACTCTGTCACATTATCTGTTCTGGCAA
131 TATTCTGGTGGTTCTGCCACAATTATCTGTATCTGGTGACTCCGTCACATTATCTGTTCTGGCAA
160949223 CGATGCTACGTATTTCTGAGGCGTG
196 CGATGCTACGTATTTCTGAGGCGTG
160949248 TGACCTAATTCTGTGTGATGTATGCCATGATTGTGAATCTGTTGCATGGGGACATGGGTTATATT
1 TGACCTAATTCTGTGTGATGTATGCCATGATTGTGAATCTGTTGCATGGGGACATGGGTTATATT
160949313 ATAGAGGAAGCGTCCTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATC
66 ATAGAGGAAGCGTCCTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATC
*
160949378 TATTCTGGTGGTTCTGCCACGATTATCTGTATCTGGTGACTCCGTCACATTATCTGTTCTGGCAA
131 TATTCTGGTGGTTCTGCCACAATTATCTGTATCTGGTGACTCCGTCACATTATCTGTTCTGGCAA
*
160949443 CGATGCTGCGTATTTCTGAGGCGTG
196 CGATGCTACGTATTTCTGAGGCGTG
160949468 T
1 T
160949469 AGCGGTTGGG
Statistics
Matches: 216, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
220 216 1.00
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (220 bp):
TGACCTAATTCTGTGTGATGTATGCCATGATTGTGAATCTGTTGCATGGGGACATGGGTTATATT
ATAGAGGAAGCGTCCTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATC
TATTCTGGTGGTTCTGCCACAATTATCTGTATCTGGTGACTCCGTCACATTATCTGTTCTGGCAA
CGATGCTACGTATTTCTGAGGCGTG
Found at i:160949412 original size:55 final size:54
Alignment explanation
Indices: 160949327--160949439 Score: 138
Period size: 55 Copynumber: 2.1 Consensus size: 54
160949317 AGGAAGCGTC
* *
160949327 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCCGCCACAT-TATCTATT
* * * * *
160949382 CTGGTGGTTCTGCCAC-GATTATCTGTATCTGGTGACTCCGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCCGCCACATTATCTATT
160949436 CTGG
1 CTGG
160949440 CAACGATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
54 19 0.38
55 31 0.62
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCCGCCACATTATCTATT
Found at i:160950553 original size:20 final size:21
Alignment explanation
Indices: 160950530--160950568 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
160950520 TAACCAAAAA
*
160950530 AACAACTAT-ATAACCATATC
1 AACAACTATGATAAACATATC
*
160950550 AACAATTATGATAAACATA
1 AACAACTATGATAAACATA
160950569 CCAAAATAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.54, C:0.18, G:0.03, T:0.26
Consensus pattern (21 bp):
AACAACTATGATAAACATATC
Found at i:160952968 original size:36 final size:37
Alignment explanation
Indices: 160952928--160953012 Score: 147
Period size: 36 Copynumber: 2.4 Consensus size: 37
160952918 TTTAGCAGCA
160952928 TTTCGGATCTATTATGATTGATTCAGTTCAATAGCC-
1 TTTCGGATCTATTATGATTGATTCAGTTCAATAGCCT
*
160952964 TTTCGGATCTATTATGATTGATTCAGTTCAGTAGCCT
1 TTTCGGATCTATTATGATTGATTCAGTTCAATAGCCT
160953001 TTTC-GATCTATT
1 TTTCGGATCTATT
160953013 CTAACTAATG
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
36 43 0.91
37 4 0.09
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.45
Consensus pattern (37 bp):
TTTCGGATCTATTATGATTGATTCAGTTCAATAGCCT
Found at i:160954755 original size:42 final size:41
Alignment explanation
Indices: 160954623--160954821 Score: 184
Period size: 42 Copynumber: 4.7 Consensus size: 41
160954613 AGAGATATCG
* * *
160954623 TGTAAGACCGTGTCTGGGACATAGGCCTCGATTTGAGATTTACA
1 TGTAAGACCATGTCTGGGACATAGGCATCGATCT--GATTT-CA
* * *
160954667 TGTAAGACCATGTTTGGGACATTGGCATCGTATCTGATTAT-G
1 TGTAAGACCATGTCTGGGACATAGGCATCG-ATCTGATT-TCA
* *
160954709 TGTAAGACCATGTTTGGGACATTGGCATCGTATCTGATTTCA
1 TGTAAGACCATGTCTGGGACATAGGCATCG-ATCTGATTTCA
* * * * *
160954751 TGTAAGACCCTGTCGGGGACAGAGGCATCGACACTGAATTACA
1 TGTAAGACCATGTCTGGGACATAGGCATCGA-TCTG-ATTTCA
* *
160954794 TGTAAGACCACGTCTGGGACGTAGGCAT
1 TGTAAGACCATGTCTGGGACATAGGCAT
160954822 TGTACTCCAT
Statistics
Matches: 131, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
41 2 0.02
42 67 0.51
43 32 0.24
44 27 0.21
45 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGACATAGGCATCGATCTGATTTCA
Found at i:160954778 original size:84 final size:85
Alignment explanation
Indices: 160954622--160954821 Score: 208
Period size: 85 Copynumber: 2.3 Consensus size: 85
160954612 CAGAGATATC
* * * **
160954622 GTGTAAGACCGTGTCTGGGACATAGGCCTCGATTTGAGATTTACATGTAAGACCATGTTTGGGAC
1 GTGTAAGACCATGTCTGGGACATAGGCATCGATCT-AGATTTACATGTAAGACCATGTCGGGGAC
**
160954687 ATTGGCATCGTATCTGATTAT
65 AGAGGCATCGTATCTGATTAT
* * *
160954708 GTGTAAGACCATGTTTGGGACATTGGCATCGTATCT-GATTT-CATGTAAGACCCTGTCGGGGAC
1 GTGTAAGACCATGTCTGGGACATAGGCATCG-ATCTAGATTTACATGTAAGACCATGTCGGGGAC
* *
160954771 AGAGGCATCG-ACACTGAATTAC
65 AGAGGCATCGTA-TCTG-ATTAT
* * *
160954793 ATGTAAGACCACGTCTGGGACGTAGGCAT
1 GTGTAAGACCATGTCTGGGACATAGGCAT
160954822 TGTACTCCAT
Statistics
Matches: 94, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
83 1 0.01
84 30 0.32
85 33 0.35
86 27 0.29
87 3 0.03
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (85 bp):
GTGTAAGACCATGTCTGGGACATAGGCATCGATCTAGATTTACATGTAAGACCATGTCGGGGACA
GAGGCATCGTATCTGATTAT
Found at i:160959749 original size:1 final size:1
Alignment explanation
Indices: 160959743--160959774 Score: 64
Period size: 1 Copynumber: 32.0 Consensus size: 1
160959733 AGTTCACATG
160959743 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
160959775 GCCCACCAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:160961104 original size:40 final size:40
Alignment explanation
Indices: 160961059--160961225 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
160961049 CGGAATATAA
*
160961059 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
160961099 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
160961139 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
160961179 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
160961218 CCGGATAT
1 CCGGATAT
160961226 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:160969107 original size:40 final size:40
Alignment explanation
Indices: 160969062--160969228 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
160969052 CGGAATATAA
160969062 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
160969102 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
160969142 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
160969182 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
160969221 CCGGATAT
1 CCGGATAT
160969229 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:160969212 original size:80 final size:79
Alignment explanation
Indices: 160969078--160969228 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
160969068 ATAATCACGT
*
160969078 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
160969143 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
160969158 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
160969221 CCGGATAT
64 CCGGATAT
160969229 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:160973261 original size:40 final size:40
Alignment explanation
Indices: 160973216--160973381 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
160973206 CGGAATATAA
160973216 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
160973256 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
160973296 CCGGATATAGCCACTAGCACAATTGCCTTC-GGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
160973335 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
160973374 CCGGATAT
1 CCGGATAT
160973382 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 45 0.43
40 60 0.57
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:160981272 original size:40 final size:40
Alignment explanation
Indices: 160981227--160981394 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
160981217 CGGAATATAA
160981227 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
160981267 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
160981307 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
160981347 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
160981387 CCGGATAT
1 CCGGATAT
160981395 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:160989951 original size:48 final size:48
Alignment explanation
Indices: 160989880--160990096 Score: 249
Period size: 48 Copynumber: 4.5 Consensus size: 48
160989870 GTGCTAGAGG
* ***
160989880 AAGACCATGTCTGGGACATGGCATCGGCCACCTTATGAGAGCCAGTGT
1 AAGACCATGTCTGGGACATGGCATCAGCCACGACATGAGAGCCAGTGT
* * * * **
160989928 AAGACCATGTCTAGGACATGGCATC-GACATTGAGATGAGAGATAGTGT
1 AAGACCATGTCTGGGACATGGCATCAGCCA-CGACATGAGAGCCAGTGT
* ** *
160989976 AAGACCATGTTTGGGACATGGCATCAGCCTTGACATGAGAGCTAGTGT
1 AAGACCATGTCTGGGACATGGCATCAGCCACGACATGAGAGCCAGTGT
* *
160990024 AAGACCATGTCTAGGACATGGCATCAGCCTCGACATGTA-AGCCAGTGT
1 AAGACCATGTCTGGGACATGGCATCAGCCACGACATG-AGAGCCAGTGT
*
160990072 AAGACCATGTCTGGGGCATGGCATC
1 AAGACCATGTCTGGGACATGGCATC
160990097 GACAATTTCA
Statistics
Matches: 146, Mismatches: 20, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
47 3 0.02
48 140 0.96
49 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (48 bp):
AAGACCATGTCTGGGACATGGCATCAGCCACGACATGAGAGCCAGTGT
Found at i:160990044 original size:96 final size:96
Alignment explanation
Indices: 160989880--160990096 Score: 276
Period size: 96 Copynumber: 2.3 Consensus size: 96
160989870 GTGCTAGAGG
* **
160989880 AAGACCATGTCTGGGACATGGCATCGGCCACCTTATGAGAGCCAGTGTAAGACCATGTCTAGGAC
1 AAGACCATGTCTGGGACATGGCATCAGCCACCACATGAGAGCCAGTGTAAGACCATGTCTAGGAC
* * *
160989945 ATGGCATC-GACATTGAGATG-AGAGATAGTGT
66 ATGGCATCAG-CATCGACATGTA-AGACAGTGT
* *** *
160989976 AAGACCATGTTTGGGACATGGCATCAGCCTTGACATGAGAGCTAGTGTAAGACCATGTCTAGGAC
1 AAGACCATGTCTGGGACATGGCATCAGCCACCACATGAGAGCCAGTGTAAGACCATGTCTAGGAC
* *
160990041 ATGGCATCAGCCTCGACATGTAAGCCAGTGT
66 ATGGCATCAGCATCGACATGTAAGACAGTGT
*
160990072 AAGACCATGTCTGGGGCATGGCATC
1 AAGACCATGTCTGGGACATGGCATC
160990097 GACAATTTCA
Statistics
Matches: 104, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
96 102 0.98
97 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (96 bp):
AAGACCATGTCTGGGACATGGCATCAGCCACCACATGAGAGCCAGTGTAAGACCATGTCTAGGAC
ATGGCATCAGCATCGACATGTAAGACAGTGT
Found at i:160994060 original size:18 final size:18
Alignment explanation
Indices: 160994037--160994074 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
160994027 CATATGGGTG
160994037 GTACTAAGTGTTCACCAT
1 GTACTAAGTGTTCACCAT
160994055 GTACTAAGTGTTCACCAT
1 GTACTAAGTGTTCACCAT
160994073 GT
1 GT
160994075 GTACAAGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.34
Consensus pattern (18 bp):
GTACTAAGTGTTCACCAT
Found at i:160998448 original size:57 final size:62
Alignment explanation
Indices: 160998384--160998526 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 62
160998374 CATCATGTGT
*
160998384 ACAAGAGAGCTACGAGATATATGTAGCTAGGT-CATG-GTGGTT-A-T-GTACACCATGTAG
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCCATGCGTGGTTCAGTAGGACACCATGTAG
*
160998441 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTC-CATGCGTGGTT-CA-GT--AGGACACCATGT
160998506 AG
61 AG
160998508 ACAAGAGAGCTACGAGATA
1 ACAAGAGAGCTACGAGATA
160998527 AACTGGCTAG
Statistics
Matches: 73, Mismatches: 3, Indels: 10
0.85 0.03 0.12
Matches are distributed among these distances:
57 31 0.42
59 4 0.05
60 6 0.08
62 1 0.01
64 1 0.01
67 30 0.41
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (62 bp):
ACAAGAGAGCTACGAGATATATGTAGCTAGGTCCATGCGTGGTTCAGTAGGACACCATGTAG
Found at i:161002733 original size:49 final size:50
Alignment explanation
Indices: 161002654--161002771 Score: 152
Period size: 49 Copynumber: 2.4 Consensus size: 50
161002644 TTAAGATACT
* *
161002654 GATGCCATGTCCTAGAAATGGTCTTACACTGGCT-TCCATATAGCGAG-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATATAGCG-GTGCC
* * *
161002704 GATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATCTATCGGTGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATAGCGGTGCC
161002753 GATGCCATGTCCCAGACAT
1 GATGCCATGTCCCAGACAT
161002772 ATACTGACAT
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
48 1 0.02
49 42 0.70
50 17 0.28
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (50 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATAGCGGTGCC
Found at i:161011495 original size:29 final size:29
Alignment explanation
Indices: 161011463--161011535 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
161011453 CTTCGAGCTC
* *
161011463 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
** *
161011492 GCACACTTAGTGCCATATATTTCTAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
161011521 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
161011536 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:161013528 original size:40 final size:39
Alignment explanation
Indices: 161013417--161013567 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
161013407 TATAATCAGT
* * *
161013417 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
161013457 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
161013497 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
161013537 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
161013568 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 15 0.16
40 80 0.84
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:161013551 original size:80 final size:79
Alignment explanation
Indices: 161013417--161013567 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
161013407 TATAATCAGT
*
161013417 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
161013482 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
161013497 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
161013560 CCGGATAT
64 CCGGATAT
161013568 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:161024385 original size:71 final size:71
Alignment explanation
Indices: 161024259--161024397 Score: 206
Period size: 71 Copynumber: 2.0 Consensus size: 71
161024249 AATTTTTACT
* *
161024259 TTTCCAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
1 TTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
161024324 TTTATG
66 TTTATG
* ** * * *
161024330 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCTA
1 TTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
161024395 TTT
66 TTT
161024398 CTACTTTCCA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
71 60 1.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (71 bp):
TTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
TTTATG
Found at i:161024543 original size:71 final size:71
Alignment explanation
Indices: 161024421--161024555 Score: 200
Period size: 71 Copynumber: 1.9 Consensus size: 71
161024411 CCTACTTTTT
* * *
161024421 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCGATTTA
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTA
161024486 TGTTTC
66 TGTTTC
* * *
161024492 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC-GGCGCACGCTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAG-ACACGCTGAGGTAATTTCAATTT
161024556 CTACTTTCCA
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
70 1 0.02
71 56 0.98
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (71 bp):
AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTA
TGTTTC
Found at i:161024543 original size:158 final size:158
Alignment explanation
Indices: 161023994--161024615 Score: 759
Period size: 158 Copynumber: 3.8 Consensus size: 158
161023984 TTACTTCTGC
* * * *
161023994 TTTCAGAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTGGCTCGCATGCCGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGG--CGCACGCTGAGGTATTTTC
* * * * * * *
161024059 ATTTTTTGCTTGTCTTTAATTCATGTTTTCAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
64 AATTTCTACTT-TC--CAATTCCTGTTTTTATAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
161024124 CCTCAAGACACGTTGAGGTAATTTCAATGTATG
126 CCTCAAGACACGTTGAGGTAATTTCAATTTATG
* * *
161024157 CTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAG-GCACG-TCGAGGTATTT
1 TTTC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCG-GCGCACGCT-GAGGTATTT
* * * *
161024220 TCAAATTCT-CTTGTTCAAATTCTGTCTTTAATTTTTACTTTTCCAAAATCAACTCATATTACGA
62 TCAATTTCTAC-T-TTCCAATTC---C--T-GTTTTTA----T--AAAATCAACTCATATTGCGA
161024284 GAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
113 GAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATG
* * *
161024330 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCTA
1 TTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGCGCACGCTGAGGTATTTTCAA
*
161024395 TTTCTACTTTCCAATTCCTACTTTTTA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
66 TTTCTACTTTCCAATTCCT-GTTTTTATAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
*
161024459 AAGACACGTTGAGGTAATTTCGATTTATG
130 AAGACACGTTGAGGTAATTTCAATTTATG
161024488 TTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGCGCACGCTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGCGCACGCTGAGGTATTTTCAA
*
161024553 TTTCTACTTTCCAATTCCTGTTTTTCA-AAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCT
66 TTTCTACTTTCCAATTCCTGTTTTT-ATAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
161024616 TTTAATTTAT
Statistics
Matches: 407, Mismatches: 30, Indels: 49
0.84 0.06 0.10
Matches are distributed among these distances:
157 5 0.01
158 181 0.44
161 5 0.01
162 1 0.00
163 25 0.06
164 1 0.00
165 43 0.11
166 2 0.00
167 6 0.01
170 9 0.02
171 60 0.15
172 2 0.00
173 67 0.16
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (158 bp):
TTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGCGCACGCTGAGGTATTTTCAA
TTTCTACTTTCCAATTCCTGTTTTTATAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
AGACACGTTGAGGTAATTTCAATTTATG
Found at i:161024702 original size:55 final size:54
Alignment explanation
Indices: 161024565--161024780 Score: 319
Period size: 56 Copynumber: 3.9 Consensus size: 54
161024555 TCTACTTTCC
* *
161024565 AATTCCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTTTT
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT
* * *
161024619 AATTTATATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTT
1 AATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT
*
161024675 AATTTCTGTTTTTCAAAAAAGT-AACTCATATTACGAGAGGTGAGTTGTA-CCTTTT
1 AATTTCTGTTTTTC-AAAAA-TCAACTCATATTGCGAGAGGTGAGTTG-AGCCTTTT
161024730 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
161024781 CGGGTCACAT
Statistics
Matches: 146, Mismatches: 10, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
53 2 0.01
54 43 0.29
55 49 0.34
56 52 0.36
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (54 bp):
AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT
Found at i:161025912 original size:11 final size:11
Alignment explanation
Indices: 161025888--161025920 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
161025878 TAACATATAG
161025888 TACAAAAAAGAA
1 TACAAAAAA-AA
161025900 TACAAAAAAAA
1 TACAAAAAAAA
161025911 TA-AAAAAAAA
1 TACAAAAAAAA
161025921 GATAAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 8 0.38
11 4 0.19
12 9 0.43
ACGTcount: A:0.82, C:0.06, G:0.03, T:0.09
Consensus pattern (11 bp):
TACAAAAAAAA
Found at i:161028364 original size:3 final size:3
Alignment explanation
Indices: 161028350--161028421 Score: 112
Period size: 3 Copynumber: 24.3 Consensus size: 3
161028340 AAACATTTAC
*
161028350 TAA TAC TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
161028398 TAA TAA TAA TAA -AA -AA TAAA TAA T
1 TAA TAA TAA TAA TAA TAA T-AA TAA T
161028422 GGTGAATATA
Statistics
Matches: 65, Mismatches: 2, Indels: 4
0.92 0.03 0.06
Matches are distributed among these distances:
2 4 0.06
3 58 0.89
4 3 0.05
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:161030546 original size:84 final size:87
Alignment explanation
Indices: 161030440--161030668 Score: 288
Period size: 89 Copynumber: 2.6 Consensus size: 87
161030430 AAAAATTAAA
* * *
161030440 AGGCCCAACTCACCTCTCGCAATATTAGTTGATTTTTGAAAACAT-G-AATT-AAAA-CAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-ATAGAAATTGAAAAGCAAAAAT
** *
161030501 TGGAAATACCTCAGCATGT-CTTG
65 TAAAAATACCTCAGCATGTGC-CG
* *
161030524 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGGAAAAGTAGAAATTGAAAAGCAAAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTGAAAAGCAAAAATT
* *
161030589 AAAAATGCCTCAGTATGTGAGCCG
66 AAAAATACCTCAGCATGT--GCCG
*
161030613 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTGAAAA
161030669 TACCTCAGCG
Statistics
Matches: 125, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
83 1 0.01
84 40 0.32
85 4 0.03
86 4 0.03
87 21 0.17
89 54 0.43
90 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (87 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTGAAAAGCAAAAATT
AAAAATACCTCAGCATGTGCCG
Found at i:161030825 original size:54 final size:53
Alignment explanation
Indices: 161030744--161030872 Score: 204
Period size: 54 Copynumber: 2.4 Consensus size: 53
161030734 GAAAAGTAGG
* *
161030744 TTTTGAAAACAGATATTAAAAGGCTCAACTCACCTTTCACAATATGAGTTGAT
1 TTTTGAAAACAGAAATTAAAAGGCTCAACTCACCTCTCACAATATGAGTTGAT
*
161030797 TTTTGAAACACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 TTTTGAAA-ACAGAAATTAAAAGGCTCAACTCACCTCTCACAATATGAGTTGAT
*
161030851 TTTTGAAAAATAGAAATTAAAA
1 TTTTG-AAAACAGAAATTAAAA
161030873 AAAACAGAAA
Statistics
Matches: 70, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
53 8 0.11
54 59 0.84
55 3 0.04
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.30
Consensus pattern (53 bp):
TTTTGAAAACAGAAATTAAAAGGCTCAACTCACCTCTCACAATATGAGTTGAT
Found at i:161030881 original size:16 final size:17
Alignment explanation
Indices: 161030856--161030889 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
161030846 TTGATTTTTG
*
161030856 AAAAATAGAAATT-AAA
1 AAAAACAGAAATTGAAA
161030872 AAAAACAGAAATTGAAA
1 AAAAACAGAAATTGAAA
161030889 A
1 A
161030890 TTCCTCAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.74, C:0.03, G:0.09, T:0.15
Consensus pattern (17 bp):
AAAAACAGAAATTGAAA
Found at i:161031068 original size:139 final size:141
Alignment explanation
Indices: 161030764--161031094 Score: 454
Period size: 139 Copynumber: 2.3 Consensus size: 141
161030754 AGATATTAAA
* * * *
161030764 AGGCTCAACTCACCTTTCACAATATGAGTTGATTTTTGAAACACAGAAATTAAAAGGCTCAACTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCCCAACTC
* *
161030829 ACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAAAAAACAGAAATTGAAAATTCC
66 ACCTCTCGCAATATGAGTTAATTTTTGAAAAATAGAAATT----AAAACAGAAATTGAAAATACC
161030894 TCAGCATGTGAGCCG
127 TCAGCATGTGAGCCG
161030909 AGGCTCAACTCACCTCTCGCAATATGAGTT-ATTTTTTTGAAAAACAGAAATTAAAA-GCCCAAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTAAAAGGCCCAAC
* * * *
161030972 TCACCTCTCG-AATATGAGTTAATTTTTGAAAAGTATAAATT-AAACAGAATTTGGAAATACCTC
64 TCACCTCTCGCAATATGAGTTAATTTTTGAAAAATAGAAATTAAAACAGAAATTGAAAATACCTC
* * *
161031035 AGCGTGTGATCTG
129 AGCATGTGAGCCG
*
161031048 AGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGA
161031095 GATTGGAAAC
Statistics
Matches: 169, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
138 15 0.09
139 58 0.34
140 1 0.01
144 29 0.17
145 44 0.26
146 22 0.13
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (141 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCCCAACTC
ACCTCTCGCAATATGAGTTAATTTTTGAAAAATAGAAATTAAAACAGAAATTGAAAATACCTCAG
CATGTGAGCCG
Found at i:161031136 original size:86 final size:83
Alignment explanation
Indices: 161030968--161031260 Score: 299
Period size: 86 Copynumber: 3.4 Consensus size: 83
161030958 ATTAAAAGCC
* * * *
161030968 CAACTCACCTCTCG-AATATGAGTTAATTTTTGAAAAGTATAAATTAAACAGAATTTGGAAATAC
1 CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAACAGAA-TT-GAAATTC
**
161031032 CTCAGCGTGTGATCTGAGGTT
64 CTCAGCGTGTCCT-TGAGGTT
* *
161031053 CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAGATTGGAAACAGCAATTGAAAAT
1 CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATT--AAACAG-AATTG-AAAT
* *
161031118 TCCTCAGCATG-CCTTGAGGCT
62 TCCTCAGCGTGTCCTTGAGGTT
* * *
161031139 CAACTCACCTTTCGCAATATGAGTTGA-TTTTGAAAAAGTAGAAATTAAAGATAGAAATTGACAT
1 CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-TAGAAATT-AA-ACAG-AATTGAAAT
161031203 TACCTCAGCGTGTCC-TGAGGCTT
62 T-CCTCAGCGTGTCCTTGAGG-TT
* *
161031226 -AACTCACCTCTCCCAATATGAGTTGGTTTTTGAAA
1 CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
161031261 CTTAATTTGA
Statistics
Matches: 175, Mismatches: 22, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
85 30 0.17
86 109 0.62
87 13 0.07
88 21 0.12
89 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (83 bp):
CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAACAGAATTGAAATTCCT
CAGCGTGTCCTTGAGGTT
Found at i:161031361 original size:54 final size:53
Alignment explanation
Indices: 161031277--161031382 Score: 167
Period size: 54 Copynumber: 2.0 Consensus size: 53
161031267 TTGAAAAGTA
* * * *
161031277 GATTTTGAAAGATAGACATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GATTTTGAAAAACAGAAATTAAAAGACTCAACTCACCTCTCGCAATATGAGTT
161031330 GATTTCTGAAAAACAGAAATTAAAAGACTCAACTCACCTCTCGCAATATGAGT
1 GATTT-TGAAAAACAGAAATTAAAAGACTCAACTCACCTCTCGCAATATGAGT
161031383 CAATTTTTGG
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
53 5 0.10
54 43 0.90
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (53 bp):
GATTTTGAAAAACAGAAATTAAAAGACTCAACTCACCTCTCGCAATATGAGTT
Found at i:161031363 original size:536 final size:522
Alignment explanation
Indices: 161030422--161031391 Score: 1344
Period size: 536 Copynumber: 1.8 Consensus size: 522
161030412 AAGTAGATTC
* * *
161030422 TGAAAAACAAAAATTAAAAGGCCCAACTCACCTCTCGCAATATTAGTTGATTTTTGAAAACATGA
1 TGAAAAACAAAAATTAAAAGGCCCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAACATAA
*
161030487 ATTAAAACAGAAATTGGAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
66 ATTAAAACAGAAATTGGAAATACCTCAGCATGTATTGAGGCTCAACTCACCTCTCGCAATATGAG
** *
161030552 TTGATTTTGGAAAAGTAGAAATTGAAAAGCAAAAATTAAAAATGCCTCAGTATGTGAGCCGAGGC
131 TTGATTTTGGAAAAACAGAAATTGAAAAGCAAAAATTAAAAATGCCTCAGCA-GT-AGCCGAGGC
161030617 TCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTGAAAATACCTCAGCGCGT
194 TCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTGAAAATACCTCAGCGCGT
* * *
161030682 GCTGAGGCTCAACTCACCTCTCACAATATGAATTGATTTTGGAACTTAATTTGAAAAGTAGGTTT
259 CCTGAGGCTCAACTCACCTCTCACAATATGAATTGATTTTGAAACTTAATTTGAAAAGTAGATTT
* * * *
161030747 TGAAAACAGATATTAAAAGGCTCAACTCACCTTTCACAATATGAGTTGATTTTTGAAACACAGAA
324 TGAAAACAGACATTAAAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTCTGAAAAACAGAA
* **
161030812 ATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAAAAAA
389 ATTAAAAGACTCAACTCACCTCTCGCAATATGAGTCAATTTTTGAAAAATAGAAATTAAAAAAAA
161030877 CAGAAATTGAAAATTCCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTATT
454 CAGAAATTGAAAATTCCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTATT
161030942 TTTT
519 TTTT
* *
161030946 TGAAAAACAGAAATTAAAA-GCCCAACTCACCTCTCG-AATATGAGTTAATTTTTGAAAAGTATA
1 TGAAAAACAAAAATTAAAAGGCCCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAA-CATA
* * *
161031009 AATT-AAACAGAATTTGGAAATACCTCAGCGTGTGATCTGAGGTTCAACTCACCTCTCGCAATAT
65 AATTAAAACAGAAATTGGAAATACCTCAGCATGT-AT-TGAGGCTCAACTCACCTCTCGCAATAT
* * * ** * *
161031073 GAGTTGATTTTTGAAAAACAGAGATTGGAAA-CAGCAATTGAAAATTCCTCAGCA-T-GCCTTGA
128 GAGTTGATTTTGGAAAAACAGAAATTGAAAAGCAAAAATTAAAAATGCCTCAGCAGTAGCC--GA
161031135 GGCTCAACTCACCTT-TCGCAATATGAGTTGA-TTTTGAAAAAGTAGAAATTAAAGATAGAAATT
191 GGCTCAACTCA-CTTCTCGCAATATGAGTTGATTTTTGAAAAA-TAGAAA-T-----T-G-AA--
* * * * *
161031198 GACATTACCTCAGCGTGTCCTGAGGCTTAACTCACCTCTCCCAATATGAGTTGGTTTTTGAAACT
244 -A-A-TACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCACAATATGAATT-GATTTTGAAACT
* *
161031263 TAATTTGAAAAGTAGATTTTGAAAGATAGACATTAAAAGGCTCAACTCACCTCTCGCAATATGAG
305 TAATTTGAAAAGTAGATTTTGAAA-ACAGACATTAAAAGGCTCAACTCACCTCTCACAATATGAG
161031328 TTGATTTCTGAAAAACAGAAATTAAAAGACTCAACTCACCTCTCGCAATATGAGTCAATTTTTG
369 TTGATTTCTGAAAAACAGAAATTAAAAGACTCAACTCACCTCTCGCAATATGAGTCAATTTTTG
161031392 GCAAACAGAA
Statistics
Matches: 388, Mismatches: 36, Indels: 32
0.85 0.08 0.07
Matches are distributed among these distances:
519 3 0.01
520 10 0.03
521 36 0.09
522 51 0.13
523 42 0.11
524 70 0.18
527 1 0.00
528 1 0.00
529 2 0.01
532 1 0.00
533 1 0.00
534 42 0.11
535 33 0.09
536 95 0.24
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (522 bp):
TGAAAAACAAAAATTAAAAGGCCCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAACATAA
ATTAAAACAGAAATTGGAAATACCTCAGCATGTATTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTGGAAAAACAGAAATTGAAAAGCAAAAATTAAAAATGCCTCAGCAGTAGCCGAGGCTC
AACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTGAAAATACCTCAGCGCGTCC
TGAGGCTCAACTCACCTCTCACAATATGAATTGATTTTGAAACTTAATTTGAAAAGTAGATTTTG
AAAACAGACATTAAAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTCTGAAAAACAGAAAT
TAAAAGACTCAACTCACCTCTCGCAATATGAGTCAATTTTTGAAAAATAGAAATTAAAAAAAACA
GAAATTGAAAATTCCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTATTTT
TT
Found at i:161031398 original size:54 final size:54
Alignment explanation
Indices: 161031294--161031404 Score: 168
Period size: 54 Copynumber: 2.1 Consensus size: 54
161031284 AAAGATAGAC
* **
161031294 ATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTCTGAAAAACAGAA
1 ATTAAAAGACTCAACTCACCTCTCGCAATATGAGTCAATTTCTGAAAAACAGAA
* **
161031348 ATTAAAAGACTCAACTCACCTCTCGCAATATGAGTCAATTTTTGGCAAACAGAA
1 ATTAAAAGACTCAACTCACCTCTCGCAATATGAGTCAATTTCTGAAAAACAGAA
161031402 ATT
1 ATT
161031405 GAAATTACCT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.27
Consensus pattern (54 bp):
ATTAAAAGACTCAACTCACCTCTCGCAATATGAGTCAATTTCTGAAAAACAGAA
Found at i:161031505 original size:76 final size:74
Alignment explanation
Indices: 161031357--161031626 Score: 384
Period size: 73 Copynumber: 3.6 Consensus size: 74
161031347 AATTAAAAGA
* * * * * *
161031357 CTCAACTCACCTCTCGCAATATGAG-TCAATTTTTGGCAAACAGAAATTGAAATTACCTCAGCAT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGT
*
161031421 GTCTTGAGG
66 GCCTTGAGG
*
161031430 CTCAACTCACCTCTCGCAATATGAGTTGACTTTTTTTGAAAAGCAGAAATTGAAAATACCTCAAC
1 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAA-CAGAAATTGAAAATACCTCAGC
*
161031495 GTGCCCTGAGG
64 GTGCCTTGAGG
*
161031506 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAATAGAAATTGAAAATACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTGAAAATACCTCAGCG
161031569 TGCCTTGAGG
65 TGCCTTGAGG
* *
161031579 CTCAGCTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAAAAAT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAAT
161031627 AAAAACATCA
Statistics
Matches: 176, Mismatches: 15, Indels: 11
0.87 0.07 0.05
Matches are distributed among these distances:
73 89 0.51
74 15 0.09
75 15 0.09
76 57 0.32
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.29
Consensus pattern (74 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGT
GCCTTGAGG
Found at i:161038596 original size:21 final size:21
Alignment explanation
Indices: 161038572--161038614 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
161038562 TGCTTGGTAG
* *
161038572 TAAAAGGTCTGAGGAGGATAA
1 TAAAAAGTCGGAGGAGGATAA
*
161038593 TAAAAATTCGGAGGAGGATAA
1 TAAAAAGTCGGAGGAGGATAA
161038614 T
1 T
161038615 TTCAAGGTCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.05, G:0.30, T:0.21
Consensus pattern (21 bp):
TAAAAAGTCGGAGGAGGATAA
Found at i:161039963 original size:4 final size:4
Alignment explanation
Indices: 161039917--161039944 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
161039907 TGGGATATGC
161039917 AATG AATG AATG AATG AATG AATG AATG
1 AATG AATG AATG AATG AATG AATG AATG
161039945 TATAAATGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (4 bp):
AATG
Found at i:161044018 original size:21 final size:21
Alignment explanation
Indices: 161043968--161044019 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
161043958 TACGTATAAT
* *
161043968 AAAATAAATATACTAATATTA
1 AAAATAAATATACTAAGAATA
* * *
161043989 ATAACAAATATACTAGGAATA
1 AAAATAAATATACTAAGAATA
161044010 AAAATAAATA
1 AAAATAAATA
161044020 AAATAATAGT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.63, C:0.06, G:0.04, T:0.27
Consensus pattern (21 bp):
AAAATAAATATACTAAGAATA
Found at i:161044373 original size:36 final size:35
Alignment explanation
Indices: 161044317--161044391 Score: 82
Period size: 35 Copynumber: 2.1 Consensus size: 35
161044307 TATAAATGTG
*
161044317 ATATTAAAAACATGTATACATAATGATATAT-AAAA
1 ATATTAAAAACATGTATACATAA-CATATATGAAAA
* *
161044352 ATATTGAAAA-ATGTATGTACATGACATATATGAAAA
1 ATATTAAAAACATGTA--TACATAACATATATGAAAA
161044388 ATAT
1 ATAT
161044392 ATACATAATG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 5 0.15
35 15 0.44
36 14 0.41
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.32
Consensus pattern (35 bp):
ATATTAAAAACATGTATACATAACATATATGAAAA
Found at i:161044451 original size:21 final size:22
Alignment explanation
Indices: 161044425--161044477 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
161044415 AAGATAAGTG
*
161044425 ATAATAGTAAAAATAAT-AGGT
1 ATAATAATAAAAATAATGAGGT
*
161044446 ATAATAATAAATATAATGAGGT
1 ATAATAATAAAAATAATGAGGT
161044468 ATGAA-AATAA
1 AT-AATAATAA
161044478 TACTATATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 15 0.54
22 11 0.39
23 2 0.07
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.28
Consensus pattern (22 bp):
ATAATAATAAAAATAATGAGGT
Found at i:161046079 original size:25 final size:26
Alignment explanation
Indices: 161046042--161046094 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
161046032 TCAAACATGC
161046042 ATTTAGGTCAATTTAATC-CTAGGGGT
1 ATTTAGGTCAATTT-ATCACTAGGGGT
*
161046068 ATTTCGGT-AATTTATCTACTAGGGGT
1 ATTTAGGTCAATTTATC-ACTAGGGGT
161046094 A
1 A
161046095 AAACTATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 3 0.12
25 5 0.21
26 16 0.67
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTATCACTAGGGGT
Found at i:161047556 original size:35 final size:36
Alignment explanation
Indices: 161047517--161047600 Score: 109
Period size: 39 Copynumber: 2.3 Consensus size: 36
161047507 TCACCCCTTT
*
161047517 TTCTTTTAATAA-AACTTTATATTTCATCCATTTAA
1 TTCTTTTAATAAGAACTTCATATTTCATCCATTTAA
*
161047552 TTCTTTAATACAAAAGAACTTCATATTTCATCCATTTAA
1 TTCTTT--TA-ATAAGAACTTCATATTTCATCCATTTAA
161047591 TTC-TTTAATA
1 TTCTTTTAATA
161047601 CAAAAGACAT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
35 8 0.19
36 2 0.05
37 2 0.05
38 5 0.12
39 25 0.60
ACGTcount: A:0.36, C:0.15, G:0.01, T:0.48
Consensus pattern (36 bp):
TTCTTTTAATAAGAACTTCATATTTCATCCATTTAA
Found at i:161047578 original size:39 final size:39
Alignment explanation
Indices: 161047529--161047607 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
161047519 CTTTTAATAA
*
161047529 AACTTTATATTTCATCCATTTAATTCTTTAATACAAAAG
1 AACTTCATATTTCATCCATTTAATTCTTTAATACAAAAG
161047568 AACTTCATATTTCATCCATTTAATTCTTTAATACAAAAG
1 AACTTCATATTTCATCCATTTAATTCTTTAATACAAAAG
161047607 A
1 A
161047608 CATGATATTC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.39, C:0.16, G:0.03, T:0.42
Consensus pattern (39 bp):
AACTTCATATTTCATCCATTTAATTCTTTAATACAAAAG
Found at i:161047654 original size:26 final size:26
Alignment explanation
Indices: 161047618--161047753 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
161047608 CATGATATTC
161047618 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
161047644 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
161047670 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
161047696 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
161047722 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
161047748 TTATCA
1 TTATCA
161047754 ATTTCTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:161048266 original size:3 final size:3
Alignment explanation
Indices: 161048209--161048252 Score: 79
Period size: 3 Copynumber: 14.3 Consensus size: 3
161048199 ATAAAACATT
161048209 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA T
161048253 GGTGAATATA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 37 0.93
4 3 0.08
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:161050371 original size:10 final size:10
Alignment explanation
Indices: 161050307--161050371 Score: 51
Period size: 10 Copynumber: 6.6 Consensus size: 10
161050297 AGACTTGTTT
*
161050307 TAAAAGTTTA
1 TAAAAATTTA
* *
161050317 TAAAAAGTAA
1 TAAAAATTTA
* *
161050327 TAGAAATTAA
1 TAAAAATTTA
* *
161050337 TTAAAATTCA
1 TAAAAATTTA
*
161050347 TAAAATTTTA
1 TAAAAATTTA
161050357 T-AAAATTTA
1 TAAAAATTTA
161050366 TAAAAA
1 TAAAAA
161050372 ATAATTTATT
Statistics
Matches: 42, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
9 8 0.19
10 34 0.81
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (10 bp):
TAAAAATTTA
Found at i:161050866 original size:19 final size:19
Alignment explanation
Indices: 161050842--161050879 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
161050832 TAGAGGCATT
*
161050842 ATTTTACCAATAAACTAAA
1 ATTTTAACAATAAACTAAA
*
161050861 ATTTTAACAATGAACTAAA
1 ATTTTAACAATAAACTAAA
161050880 TTAATAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.53, C:0.13, G:0.03, T:0.32
Consensus pattern (19 bp):
ATTTTAACAATAAACTAAA
Found at i:161066115 original size:27 final size:28
Alignment explanation
Indices: 161066059--161066128 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
161066049 AAATTTGTAC
161066059 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
161066087 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
161066114 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
161066129 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:161066139 original size:27 final size:27
Alignment explanation
Indices: 161066059--161066140 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
161066049 AAATTTGTAC
* *
161066059 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
161066087 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
161066114 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
161066141 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:161073696 original size:27 final size:28
Alignment explanation
Indices: 161073640--161073709 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
161073630 AAATTTGTAC
161073640 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
161073668 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
161073695 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
161073710 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:161073720 original size:27 final size:27
Alignment explanation
Indices: 161073640--161073721 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
161073630 AAATTTGTAC
* *
161073640 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
161073668 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
161073695 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
161073722 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:161078656 original size:24 final size:24
Alignment explanation
Indices: 161078624--161078672 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
161078614 CCTGGACTGG
161078624 TAATCCCGACAATACTCTATGAGT
1 TAATCCCGACAATACTCTATGAGT
161078648 TAATCCCGACAATACTCTATGAGT
1 TAATCCCGACAATACTCTATGAGT
161078672 T
1 T
161078673 TATATTGCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (24 bp):
TAATCCCGACAATACTCTATGAGT
Found at i:161089760 original size:31 final size:31
Alignment explanation
Indices: 161089722--161089785 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
161089712 CCTTTTCATA
161089722 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
161089753 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
161089784 TT
1 TT
161089786 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:161090056 original size:23 final size:24
Alignment explanation
Indices: 161089977--161090118 Score: 191
Period size: 24 Copynumber: 6.0 Consensus size: 24
161089967 GCTTTATCAT
* *
161089977 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* * **
161090002 ATAACTGGGGCAAAATCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
161090026 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
161090049 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
161090073 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
161090096 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
161090119 CACTTCCTCC
Statistics
Matches: 107, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
23 46 0.43
24 50 0.47
25 11 0.10
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:161090118 original size:47 final size:47
Alignment explanation
Indices: 161089977--161090118 Score: 189
Period size: 47 Copynumber: 3.0 Consensus size: 47
161089967 GCTTTATCAT
* * * *
161089977 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAATCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTTTA
*
161090026 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
161090073 ATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTT
161090119 CACTTCCTCC
Statistics
Matches: 86, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
46 16 0.19
47 49 0.57
48 9 0.10
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
Found at i:161090191 original size:20 final size:20
Alignment explanation
Indices: 161090163--161090227 Score: 103
Period size: 20 Copynumber: 3.2 Consensus size: 20
161090153 GCATTTATGA
*
161090163 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
161090183 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
* *
161090203 ACATGTCATGTGCATCTCAT
1 ACATATCATGTGCATATCAT
161090223 ACATA
1 ACATA
161090228 CCATATTTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:161090302 original size:25 final size:25
Alignment explanation
Indices: 161090270--161090317 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
161090260 ATACATAAAC
* * *
161090270 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
161090295 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
161090318 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:161096839 original size:31 final size:31
Alignment explanation
Indices: 161096801--161096864 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
161096791 CCTTTTCATA
161096801 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
161096832 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
161096863 TT
1 TT
161096865 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:161097107 original size:24 final size:24
Alignment explanation
Indices: 161097056--161097198 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
161097046 GCTTTATCAT
*
161097056 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
161097081 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
161097105 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
161097128 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
161097152 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
161097176 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
161097199 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:161097135 original size:47 final size:48
Alignment explanation
Indices: 161097056--161097197 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
161097046 GCTTTATCAT
* *
161097056 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
161097105 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
161097152 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
161097198 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:161097156 original size:71 final size:72
Alignment explanation
Indices: 161097055--161097198 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
161097045 TGCTTTATCA
*
161097055 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
161097120 GCCCTTT
66 GCCCTTT
* * **
161097127 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
161097190 AGCCCTTT
65 AGCCCTTT
161097198 T
1 T
161097199 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:161097278 original size:11 final size:11
Alignment explanation
Indices: 161097248--161097301 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
161097238 TTATGATTAC
161097248 TCATGTGCATA
1 TCATGTGCATA
*
161097259 TCA--TACATA
1 TCATGTGCATA
161097268 TCATGTGCATA
1 TCATGTGCATA
*
161097279 TCA--TACAT-
1 TCATGTGCATA
161097287 TCATGTGCATA
1 TCATGTGCATA
161097298 TCAT
1 TCAT
161097302 ACATACCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 3 0.09
9 12 0.35
10 4 0.12
11 15 0.44
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:161097292 original size:19 final size:20
Alignment explanation
Indices: 161097248--161097306 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
161097238 TTATGATTAC
161097248 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
161097268 TCATGTGCATATCATACAT-
1 TCATGTGCATATCATACATA
161097287 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
161097307 CCATATTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:161097374 original size:25 final size:25
Alignment explanation
Indices: 161097346--161097393 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
161097336 ATACATAAAC
* * *
161097346 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
161097371 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
161097394 CATTATAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:161100822 original size:28 final size:28
Alignment explanation
Indices: 161100753--161100853 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
161100743 GACAAGATTG
* * * *
161100753 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
161100783 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
161100811 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
161100840 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
161100854 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:161100847 original size:29 final size:28
Alignment explanation
Indices: 161100782--161100853 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
161100772 AAAATTGTAC
*
161100782 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
161100810 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
161100839 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
161100854 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:161110792 original size:40 final size:39
Alignment explanation
Indices: 161110627--161110810 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
161110617 AAATTGAATG
* * *
161110627 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
161110667 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
161110707 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
161110747 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
161110786 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
161110811 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:161110835 original size:80 final size:81
Alignment explanation
Indices: 161110667--161110855 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
161110657 GCTGGAAATT
* * * *
161110667 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
161110732 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
161110748 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
161110811 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
161110827 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
161110856 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Done.