Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 519 of 770
Found at i:161118874 original size:40 final size:39
Alignment explanation
Indices: 161118709--161118892 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
161118699 AAATTGAATG
* * *
161118709 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
161118749 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
161118789 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
161118829 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
161118868 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
161118893 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:161118917 original size:80 final size:81
Alignment explanation
Indices: 161118749--161118937 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
161118739 GCTGGAAATT
* * * *
161118749 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
161118814 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
161118830 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
161118893 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
161118909 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
161118938 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:161121865 original size:27 final size:27
Alignment explanation
Indices: 161121806--161121865 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
161121796 AAAGTCAGTC
* *
161121806 CATTCAGAGTTTTCCACAAAGGCTATT
1 CATTCAAAGTTTTCCACAAAGGATATT
*
161121833 CATTCAAAGTTTTCCACAAAGGATTTT
1 CATTCAAAGTTTTCCACAAAGGATATT
*
161121860 CTTTCA
1 CATTCA
161121866 GAGCTCGCCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.37
Consensus pattern (27 bp):
CATTCAAAGTTTTCCACAAAGGATATT
Found at i:161121866 original size:54 final size:54
Alignment explanation
Indices: 161121808--161121938 Score: 138
Period size: 54 Copynumber: 2.4 Consensus size: 54
161121798 AGTCAGTCCA
* ** *
161121808 TTCAGAGTTTTCCACAAAGGCTATTCATTCAAAGTTTTCCACAAAGGATTTTCT
1 TTCAGAGTTATCCACAAAGGCTATTCATTCAAAGTTCACCACAAAGGATATTCT
* ** ** ** *
161121862 TTCAGAGCTCGCCACAAATACTATTTTTTCAAAGTTCACCACAAAGGCTATTCT
1 TTCAGAGTTATCCACAAAGGCTATTCATTCAAAGTTCACCACAAAGGATATTCT
161121916 TTCAGAGTTCAT-CACAAAGGCTA
1 TTCAGAGTT-ATCCACAAAGGCTA
161121939 ACAAAATGCC
Statistics
Matches: 60, Mismatches: 16, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (54 bp):
TTCAGAGTTATCCACAAAGGCTATTCATTCAAAGTTCACCACAAAGGATATTCT
Found at i:161121936 original size:27 final size:27
Alignment explanation
Indices: 161121819--161121938 Score: 123
Period size: 27 Copynumber: 4.4 Consensus size: 27
161121809 TCAGAGTTTT
* **
161121819 CCACAAAGGCTATTCATTCAAAGTTTT
1 CCACAAAGGCTATTCTTTCAAAGTTCA
* * * * *
161121846 CCACAAAGGATTTTCTTTCAGAGCTCG
1 CCACAAAGGCTATTCTTTCAAAGTTCA
** *
161121873 CCACAAATACTATTTTTTCAAAGTTCA
1 CCACAAAGGCTATTCTTTCAAAGTTCA
*
161121900 CCACAAAGGCTATTCTTTCAGAGTTCA
1 CCACAAAGGCTATTCTTTCAAAGTTCA
*
161121927 TCACAAAGGCTA
1 CCACAAAGGCTA
161121939 ACAAAATGCC
Statistics
Matches: 73, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (27 bp):
CCACAAAGGCTATTCTTTCAAAGTTCA
Found at i:161124395 original size:30 final size:29
Alignment explanation
Indices: 161124355--161124414 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
161124345 TTCCCGAGCC
*
161124355 TAGGGTCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATG-AAAAGTT
* * *
161124385 TAGGGGCAAAATTGTAATTTTGAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGAAAAGTT
161124414 T
1 T
161124415 GAATTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.40, C:0.05, G:0.23, T:0.32
Consensus pattern (29 bp):
TAGGGGCAAAAGTGTAAATATGAAAAGTT
Found at i:161125215 original size:64 final size:64
Alignment explanation
Indices: 161125136--161125318 Score: 158
Period size: 64 Copynumber: 2.8 Consensus size: 64
161125126 AGACATTATG
* * * *
161125136 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATAT
1 ATGTAGTTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
** * * * * * *
161125200 ATGTAGTTAGGTCGCATGCATGGTTCCAGGTGAAGGACACCATGTAGAC-AGAGAGGTACGAGAT
1 ATGTAGTTAGGTCGCATGGGTGATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
161125264 AA
63 AA
* * *
161125266 AT-TGGTTAGGTCACATGGGTGATACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGTTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
161125319 CGAACTATAT
Statistics
Matches: 90, Mismatches: 23, Indels: 13
0.71 0.18 0.10
Matches are distributed among these distances:
61 1 0.01
62 11 0.12
63 7 0.08
64 22 0.24
65 17 0.19
66 18 0.20
67 14 0.16
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.25
Consensus pattern (64 bp):
ATGTAGTTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:161128793 original size:30 final size:30
Alignment explanation
Indices: 161128736--161128796 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
161128726 TTCCCGAGCC
*
161128736 TAGGGTCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGTCAAAAGTGTAAATATGAAAAAGTT
* * * *
161128766 TAGGGTCAAAATTGTAATTTTTAAAAAGTT
1 TAGGGTCAAAAGTGTAAATATGAAAAAGTT
161128796 T
1 T
161128797 GAATTAACGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.05, G:0.20, T:0.34
Consensus pattern (30 bp):
TAGGGTCAAAAGTGTAAATATGAAAAAGTT
Found at i:161136196 original size:33 final size:33
Alignment explanation
Indices: 161136159--161136226 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
161136149 AGAAAGTTGG
161136159 TAAAATGGCCGTTTTAGTATCGAGGTAAGTTCA
1 TAAAATGGCCGTTTTAGTATCGAGGTAAGTTCA
161136192 TAAAATGGCCGTTTTAGTATCGAGGTAAGTTCA
1 TAAAATGGCCGTTTTAGTATCGAGGTAAGTTCA
161136225 TA
1 TA
161136227 TGTATAATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.34
Consensus pattern (33 bp):
TAAAATGGCCGTTTTAGTATCGAGGTAAGTTCA
Found at i:161136874 original size:64 final size:64
Alignment explanation
Indices: 161136795--161136977 Score: 183
Period size: 67 Copynumber: 2.8 Consensus size: 64
161136785 AGACATTATG
* * * *
161136795 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
161136859 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
161136924 AA
63 AA
* * * *
161136926 AT-TGGTTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAG
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAG
161136978 TCGAACTATA
Statistics
Matches: 96, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 25 0.26
66 20 0.21
67 32 0.33
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:161138422 original size:40 final size:40
Alignment explanation
Indices: 161138377--161138506 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
161138367 CGGAATACAA
161138377 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
161138417 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
161138457 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
161138497 CCGGATATAA
1 CCGGATATAA
161138507 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:161138521 original size:40 final size:40
Alignment explanation
Indices: 161138377--161138540 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
161138367 CGGAATACAA
* **
161138377 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
161138417 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
161138457 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
161138497 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
161138537 CCGG
1 CCGG
161138541 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:161142817 original size:19 final size:19
Alignment explanation
Indices: 161142793--161142830 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
161142783 GTGAAAAGTC
161142793 TGATAAATTTCAAGAGTTT
1 TGATAAATTTCAAGAGTTT
161142812 TGATAAATTTCAAGAGTTT
1 TGATAAATTTCAAGAGTTT
161142831 CGTGCAAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (19 bp):
TGATAAATTTCAAGAGTTT
Found at i:161145291 original size:13 final size:13
Alignment explanation
Indices: 161145273--161145297 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
161145263 CGGCAGGGTT
161145273 ACGCCCGTGTGAC
1 ACGCCCGTGTGAC
161145286 ACGCCCGTGTGA
1 ACGCCCGTGTGA
161145298 GTCGTGCTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.32, T:0.16
Consensus pattern (13 bp):
ACGCCCGTGTGAC
Found at i:161149021 original size:27 final size:28
Alignment explanation
Indices: 161148964--161149033 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
161148954 AAATTTGTAC
**
161148964 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
161148992 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
161149019 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
161149034 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:161149042 original size:27 final size:27
Alignment explanation
Indices: 161148964--161149045 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
161148954 AAATTTGTAC
* *
161148964 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
161148992 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
161149019 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
161149046 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:161155963 original size:40 final size:39
Alignment explanation
Indices: 161155838--161155965 Score: 152
Period size: 40 Copynumber: 3.3 Consensus size: 39
161155828 TATGCTGGAA
* * *
161155838 ATTATATCCGGTTAAGACCCG-AGGCAATTGTGCTAGTG
1 ATTATATCCGGGTAAGACCCGAAGGCATTTGTGCGAGTG
** * *
161155876 GCTATATCCGGGTAAGACCCGAAGGCATTCGTGCGAGTT
1 ATTATATCCGGGTAAGACCCGAAGGCATTTGTGCGAGTG
*
161155915 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGG-TAAGACCCGAAGGCATTTGTGCGA-GTG
161155955 ATTATATCCGG
1 ATTATATCCGG
161155966 TTATATTCCG
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
38 18 0.24
39 23 0.31
40 33 0.45
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (39 bp):
ATTATATCCGGGTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:161157862 original size:40 final size:40
Alignment explanation
Indices: 161157817--161157983 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
161157807 CGGAATATAA
161157817 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
161157857 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
161157897 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
161157937 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
161157976 CCGGATAT
1 CCGGATAT
161157984 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:161165842 original size:40 final size:40
Alignment explanation
Indices: 161165797--161165963 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
161165787 CGGAATATAA
161165797 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
161165837 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
161165877 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
161165917 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
161165956 CCGGATAT
1 CCGGATAT
161165964 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:161172281 original size:46 final size:44
Alignment explanation
Indices: 161172228--161172400 Score: 188
Period size: 46 Copynumber: 3.8 Consensus size: 44
161172218 TTGGGCATCT
161172228 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-GTCC
*** * *
161172274 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA-TCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAAGTCC
*
161172321 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACG-CTC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-GTC-C
*
161172367 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
161172401 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 65 0.60
47 32 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (44 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAGTCC
Found at i:161172380 original size:93 final size:93
Alignment explanation
Indices: 161172221--161172392 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
161172211 AGGATGTTTG
* * *
161172221 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGTCCGAACTCGTTGAG
161172286 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
161172314 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACG-CTCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGTC-CGAACTCGTTGA
161172378 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
161172393 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:161175358 original size:15 final size:15
Alignment explanation
Indices: 161175338--161175406 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
161175328 GTATCTTGGG
161175338 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
161175353 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
161175368 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
161175383 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
161175398 TTTCTTTAT
1 TTTCTTTAT
161175407 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:161175407 original size:30 final size:30
Alignment explanation
Indices: 161175329--161175416 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
161175319 CATAGTATCG
* * * *
161175329 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
161175359 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
161175389 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
161175417 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:161178175 original size:22 final size:22
Alignment explanation
Indices: 161178148--161178318 Score: 75
Period size: 22 Copynumber: 7.4 Consensus size: 22
161178138 CATGCATTTG
161178148 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * **
161178170 TGTGATGAATG-TGAACATGTACATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
161178195 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
161178217 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
161178240 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
***
161178264 TGTGATGAA-TATGAACAT-GCACATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
161178289 TGTGATACGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
161178311 TGTGATAA
1 TGTGATAA
161178319 ATGTGAACAT
Statistics
Matches: 108, Mismatches: 20, Indels: 42
0.64 0.12 0.25
Matches are distributed among these distances:
22 32 0.30
23 26 0.24
24 25 0.23
25 25 0.23
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:161178363 original size:22 final size:22
Alignment explanation
Indices: 161178335--161178410 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
161178325 ACATGCATAT
161178335 ATGTGATAAGGCAAAATGGCCA
1 ATGTGATAAGGCAAAATGGCCA
* *
161178357 ATGTGATAAATGTG-AACAT-GCATA
1 ATGTGAT-AA-G-GCAAAATGGC-CA
*
161178381 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAAAATGGCCA
161178404 ATGTGAT
1 ATGTGAT
161178411 GAACGTGGAA
Statistics
Matches: 42, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 15 0.36
23 9 0.21
24 10 0.24
25 8 0.19
ACGTcount: A:0.38, C:0.11, G:0.26, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAAAATGGCCA
Found at i:161178447 original size:47 final size:47
Alignment explanation
Indices: 161178075--161178413 Score: 498
Period size: 47 Copynumber: 7.2 Consensus size: 47
161178065 TTAGGATTTT
* ** * * * *
161178075 ATGTGATGGATGTGAATGTGTATATATGAGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
161178122 ATGTGATGAATGTGAACATGCATTTGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
161178169 ATGTGATGAATGTGAACATGTACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
161178216 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
161178263 ATGTGATGAATATGAACATGCACATATGTGATACGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* **
161178310 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
161178357 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
161178404 ATGTGATGAA
1 ATGTGATGAA
161178414 CGTGGAAGTG
Statistics
Matches: 264, Mismatches: 28, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 264 1.00
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:161178480 original size:46 final size:46
Alignment explanation
Indices: 161178427--161178517 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
161178417 GGAAGTGTAT
* * *
161178427 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGTGTATAAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATAAGATGG
* * * *
161178473 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATAAGATG
161178518 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.35, C:0.07, G:0.31, T:0.27
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATAAGATGG
Found at i:161180013 original size:40 final size:40
Alignment explanation
Indices: 161179958--161180153 Score: 315
Period size: 40 Copynumber: 4.9 Consensus size: 40
161179948 TTCAGTATGT
161179958 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
161179998 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
* *
161180038 TGTATCCGGGCGAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
* * *
161180078 TGTAACCGGGCTAAGTCCCGAAAAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
*
161180118 TATATCCGGGCTAA-ACCTCGAAG-GCATTCGTGCTAG
1 TATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTAG
161180154 AACCATGAGG
Statistics
Matches: 146, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 15 0.10
40 131 0.90
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
Found at i:161180226 original size:29 final size:28
Alignment explanation
Indices: 161180191--161180292 Score: 107
Period size: 29 Copynumber: 3.6 Consensus size: 28
161180181 CTTCAACCGA
* *
161180191 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATC-GTAATTGAG
* * *
161180220 GCACTATGTGTGCGAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
*
161180248 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGA-TCGTAATTGAG
*
161180277 GCACAATGTGTGCGAG
1 GCACTATGTGTGCGAG
161180293 TTCTTTAATC
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
28 22 0.37
29 38 0.63
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGTAATTGAG
Found at i:161180249 original size:57 final size:57
Alignment explanation
Indices: 161180159--161180326 Score: 228
Period size: 57 Copynumber: 2.9 Consensus size: 57
161180149 GCTAGAACCA
* * * * *
161180159 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAAT
**
161180216 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAAT
* * * * *
161180273 TGAGGCACAATGTGTGCGAGTTCTTTAATCAAGCGCTATGTGTGCGAAATCAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT
161180327 CAGTGGGCAC
Statistics
Matches: 97, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
57 97 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.30
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAAT
Found at i:161180260 original size:28 final size:27
Alignment explanation
Indices: 161180163--161180319 Score: 125
Period size: 28 Copynumber: 5.6 Consensus size: 27
161180153 GAACCATGAG
* * *
161180163 GCACTGTGTGTGCAAGTTCTTCAACCGA
1 GCACTATGTGTGCGAGTTCTT-AATCGA
* * * * *
161180191 GCACTATGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCGAGTTC-TTAATCGA
161180219 GGCACTATGTGTGCGAGTTCTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTT-AATCGA
** *
161180248 GCACTATGTGTGCGAGATTGGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTAATCGA
* *
161180276 GGCACAATGTGTGCGAGTTCTTTAATCAA
1 -GCACTATGTGTGCGAGTTC-TTAATCGA
*
161180305 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
161180320 AATCAGTCAG
Statistics
Matches: 101, Mismatches: 22, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
28 56 0.55
29 45 0.45
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTATGTGTGCGAGTTCTTAATCGA
Found at i:161181056 original size:2 final size:2
Alignment explanation
Indices: 161181044--161181074 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
161181034 AAGTTACATG
*
161181044 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
161181075 TTTCATAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:161184238 original size:46 final size:46
Alignment explanation
Indices: 161184182--161184357 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
161184172 TGTTTGGGCA
161184182 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
161184228 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACT-AGACAT-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-TGCGA-ATG
* *
161184276 T-CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
161184321 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
161184358 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
44 2 0.02
45 3 0.03
46 68 0.62
47 30 0.27
48 4 0.04
49 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:161185977 original size:28 final size:29
Alignment explanation
Indices: 161185945--161186043 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
161185935 ATAATAAGCC
*
161185945 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
161185973 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
161186001 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
161186030 CGCACACTTAGTGC
1 CGCACACTTAGTGC
161186044 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:161193969 original size:28 final size:29
Alignment explanation
Indices: 161193937--161194035 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
161193927 ATAATAAGCC
*
161193937 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
161193965 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
161193993 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
161194022 CGCACACTTAGTGC
1 CGCACACTTAGTGC
161194036 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:161198480 original size:2 final size:2
Alignment explanation
Indices: 161198468--161198532 Score: 109
Period size: 2 Copynumber: 34.0 Consensus size: 2
161198458 GGTGATAAGG
161198468 AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
161198508 AT AT AT AT A- AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
161198533 CTTGTATGGA
Statistics
Matches: 60, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
1 3 0.05
2 57 0.95
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:161198490 original size:17 final size:17
Alignment explanation
Indices: 161198468--161198532 Score: 107
Period size: 17 Copynumber: 3.9 Consensus size: 17
161198458 GGTGATAAGG
161198468 ATATATA-ATATATAT-
1 ATATATATATATATATA
161198483 ATATATATATATATATA
1 ATATATATATATATATA
*
161198500 TTATATATATATATATA
1 ATATATATATATATATA
161198517 ATATATATATATATAT
1 ATATATATATATATAT
161198533 CTTGTATGGA
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
15 7 0.15
16 8 0.17
17 31 0.67
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATATATATATATATATA
Found at i:161201920 original size:29 final size:29
Alignment explanation
Indices: 161201887--161202017 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
161201877 GTGACGAGAT
161201887 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
161201916 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
161201945 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
161201974 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
161202003 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
161202018 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:161209975 original size:29 final size:29
Alignment explanation
Indices: 161209942--161210072 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
161209932 GTGACGAGAT
161209942 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
161209971 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
161210000 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
161210029 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
161210058 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
161210073 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:161212076 original size:20 final size:21
Alignment explanation
Indices: 161212037--161212076 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
161212027 GTTATAATGA
*
161212037 CCACACGGCCGTGCTGCCCTT
1 CCACACGGCCATGCTGCCCTT
*
161212058 CCACACGGGCATG-TGCCCT
1 CCACACGGCCATGCTGCCCT
161212077 GTTTCAAGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.12, C:0.45, G:0.25, T:0.17
Consensus pattern (21 bp):
CCACACGGCCATGCTGCCCTT
Found at i:161214011 original size:2 final size:2
Alignment explanation
Indices: 161214004--161214048 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
161213994 GTAAGCTTAC
*
161214004 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
161214046 AT A
1 AT A
161214049 CATGCATGCA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:161222406 original size:98 final size:98
Alignment explanation
Indices: 161222291--161222487 Score: 376
Period size: 98 Copynumber: 2.0 Consensus size: 98
161222281 ATCCCAGTAG
* *
161222291 TTTGCTCTCTCCATTTCTATCCATATTTCATGCTAGGGTTCATGTTCAAAAAATTACCCATGCAT
1 TTTGCTCTCTCCATTTCTACCCATATTTCATGCTAAGGTTCATGTTCAAAAAATTACCCATGCAT
161222356 GAGTTATTGGTATTTTGATGGATTATGGAAGGA
66 GAGTTATTGGTATTTTGATGGATTATGGAAGGA
161222389 TTTGCTCTCTCCATTTCTACCCATATTTCATGCTAAGGTTCATGTTCAAAAAATTACCCATGCAT
1 TTTGCTCTCTCCATTTCTACCCATATTTCATGCTAAGGTTCATGTTCAAAAAATTACCCATGCAT
161222454 GAGTTATTGGTATTTTGATGGATTATGGAAGGA
66 GAGTTATTGGTATTTTGATGGATTATGGAAGGA
161222487 T
1 T
161222488 ATGAAAGATA
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 97 1.00
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.40
Consensus pattern (98 bp):
TTTGCTCTCTCCATTTCTACCCATATTTCATGCTAAGGTTCATGTTCAAAAAATTACCCATGCAT
GAGTTATTGGTATTTTGATGGATTATGGAAGGA
Found at i:161225973 original size:22 final size:22
Alignment explanation
Indices: 161225947--161225990 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
161225937 AAGAAAAGTT
161225947 AGTAGATATTTTTAGTGAATCA
1 AGTAGATATTTTTAGTGAATCA
*
161225969 AGTAGATATTTTTGGTGAATCA
1 AGTAGATATTTTTAGTGAATCA
161225991 TCGATAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.20, T:0.41
Consensus pattern (22 bp):
AGTAGATATTTTTAGTGAATCA
Found at i:161228211 original size:24 final size:24
Alignment explanation
Indices: 161228183--161228230 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
161228173 TGAGAAATAT
161228183 GGCTTGGAAAATAGCCTTATTCTG
1 GGCTTGGAAAATAGCCTTATTCTG
*
161228207 GGCTTGGAAAATGGCCTTATTCTG
1 GGCTTGGAAAATAGCCTTATTCTG
161228231 TATACACAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (24 bp):
GGCTTGGAAAATAGCCTTATTCTG
Found at i:161231567 original size:2 final size:2
Alignment explanation
Indices: 161231560--161231584 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
161231550 TTTGGCCACA
161231560 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
161231585 CATCTCATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:161231653 original size:46 final size:46
Alignment explanation
Indices: 161231586--161231719 Score: 137
Period size: 46 Copynumber: 2.9 Consensus size: 46
161231576 ATATATATAC
* * *
161231586 ATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATCT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * *
161231632 ATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATATAT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * * *
161231678 A-CAT-GTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 ATC-TCATACACA-TC-TCACATTAGCCATTCGGCCTTACCACA
161231720 CATACGCATG
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 6 0.08
46 43 0.59
47 24 0.33
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (46 bp):
ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
Found at i:161231711 original size:47 final size:47
Alignment explanation
Indices: 161231649--161231864 Score: 369
Period size: 47 Copynumber: 4.6 Consensus size: 47
161231639 ACACATTTCG
* * * *
161231649 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
161231696 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
161231743 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
161231790 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
161231837 CATTGGCCATTCGGCCTTATCACGCATA
1 CATTGGCCATTCGGCCTTATCACACATA
161231865 TATATACAGG
Statistics
Matches: 162, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 162 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
Found at i:161231752 original size:94 final size:94
Alignment explanation
Indices: 161231649--161231890 Score: 376
Period size: 94 Copynumber: 2.5 Consensus size: 94
161231639 ACACATTTCG
*
161231649 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
161231714 ATCACACATACGCATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* * **
161231743 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
161231808 ATCACACATACACATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* *
161231837 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACAT
1 CATTGGCCATTCGGCC-T-T-AC-CACATATATACATGTTCACATTCATCACAT
161231891 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
94 104 0.79
95 1 0.01
96 1 0.01
97 1 0.01
98 25 0.19
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATACACATGTTCACATTCATCA
Found at i:161235360 original size:40 final size:40
Alignment explanation
Indices: 161235335--161235855 Score: 884
Period size: 40 Copynumber: 13.1 Consensus size: 40
161235325 GGACCCAGCT
*
161235335 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
* *
161235375 CAGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
161235415 CGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
161235455 CGGATACATCACTAGCACGAATGCTCTCCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
161235495 CGGATACATCACTAGCACAAATGCTCTTC-GGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
161235534 CGGATACATCACTAGCACGAATGCTCTTC-GGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
161235573 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
161235613 CGGATACATCACTAGCACAAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
161235653 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
* *
161235693 CGGATATATCACTAGCACAAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
161235733 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
161235773 CGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
* * * *
161235813 CGGATATATCACTAGCACAAATGCTCTTCGGGACTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
161235853 CGG
1 CGG
161235856 CTATACAACT
Statistics
Matches: 457, Mismatches: 23, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
39 77 0.17
40 380 0.83
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
Found at i:161238206 original size:46 final size:46
Alignment explanation
Indices: 161238139--161238272 Score: 137
Period size: 46 Copynumber: 2.9 Consensus size: 46
161238129 ATATATATAC
* * *
161238139 ATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATCT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * *
161238185 ATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATATAT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * * *
161238231 A-CAT-GTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 ATC-TCATACACA-TC-TCACATTAGCCATTCGGCCTTACCACA
161238273 CATACGCATG
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 6 0.08
46 43 0.59
47 24 0.33
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (46 bp):
ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
Found at i:161238264 original size:47 final size:47
Alignment explanation
Indices: 161238202--161238417 Score: 369
Period size: 47 Copynumber: 4.6 Consensus size: 47
161238192 ACACATTTCG
* * * *
161238202 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
161238249 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
161238296 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
161238343 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
161238390 CATTGGCCATTCGGCCTTATCACGCATA
1 CATTGGCCATTCGGCCTTATCACACATA
161238418 TATATACAGG
Statistics
Matches: 162, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 162 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
Found at i:161238305 original size:94 final size:94
Alignment explanation
Indices: 161238202--161238443 Score: 376
Period size: 94 Copynumber: 2.5 Consensus size: 94
161238192 ACACATTTCG
*
161238202 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
161238267 ATCACACATACGCATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* * **
161238296 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
161238361 ATCACACATACACATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* *
161238390 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACAT
1 CATTGGCCATTCGGCC-T-T-AC-CACATATATACATGTTCACATTCATCACAT
161238444 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
94 104 0.79
95 1 0.01
96 1 0.01
97 1 0.01
98 25 0.19
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATACACATGTTCACATTCATCA
Found at i:161249754 original size:40 final size:40
Alignment explanation
Indices: 161249627--161249756 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
161249617 ATGCTGGAAA
* *
161249627 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
161249667 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
161249707 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
161249747 TTATATCCGG
1 TTATATCCGG
161249757 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:161257743 original size:40 final size:40
Alignment explanation
Indices: 161257616--161257745 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
161257606 ATGCTGGAAA
* *
161257616 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
161257656 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
161257696 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
161257736 TTATATCCGG
1 TTATATCCGG
161257746 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:161266326 original size:24 final size:24
Alignment explanation
Indices: 161266281--161266327 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
161266271 TTATTTACAG
*
161266281 ATTATCCCCATTTCTAATAAACAT
1 ATTATCCCCATTTCTAAAAAACAT
*
161266305 ATTA-CCCCATTTTTAACAAAACA
1 ATTATCCCCATTTCTAA-AAAACA
161266328 ACATACATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.40, C:0.26, G:0.00, T:0.34
Consensus pattern (24 bp):
ATTATCCCCATTTCTAAAAAACAT
Found at i:161267483 original size:2 final size:2
Alignment explanation
Indices: 161267476--161267506 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
161267466 CATCCTTTTA
*
161267476 AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
161267507 GTACTCCGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:161271458 original size:46 final size:46
Alignment explanation
Indices: 161271408--161271623 Score: 215
Period size: 46 Copynumber: 4.7 Consensus size: 46
161271398 GATGTGGCTA
*
161271408 ATGCATGTCCCAGACATGTCTTACACTGGCTCTTGTGTCAAAGGCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTTGTCTCAAAGGCG
* * * * *
161271454 ATGCATGTCCCAGACATGTCTTACACTAGCACACATATCTC-GAGGCTG
1 ATGCATGTCCCAGACATGTCTTACACT-G-GCTCTTGTCTCAAAGGC-G
* * **
161271502 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAAACCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTTGTCTCAAAGGCG
* * * *
161271548 ATGCATGTCCCAGACATGTCTTCCACTAG--CTT-TCGCAATGTGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTTGTCTCAA--AGG-CG
*
161271594 ATGCATGTCCCAGACATGTCTTACGCTGGC
1 ATGCATGTCCCAGACATGTCTTACACTGGC
161271624 GCACATATCA
Statistics
Matches: 138, Mismatches: 24, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
43 5 0.04
44 2 0.01
46 90 0.65
47 7 0.05
48 34 0.25
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTCTTGTCTCAAAGGCG
Found at i:161271516 original size:94 final size:91
Alignment explanation
Indices: 161271364--161271623 Score: 297
Period size: 94 Copynumber: 2.8 Consensus size: 91
161271354 AAGCCAATGC
** ** * *
161271364 CATGTCCCAGACATGGTCTTACACTAGCTTTGATGATGTGGCTAATGCATGTCCCAGACATGTCT
1 CATGTCCCAGACAT-GTCTTACACTAGC-TACACAATGAGGCTGATGCATGTCCCAGACATGTCT
* * **
161271429 TACACTGGCTCTTGTGTCAAAGGCGATG
64 TACACTGGCTCTCGTCTCAAAACCGATG
161271457 CATGTCCCAGACATGTCTTACACTAGC-ACACATATCTCGAGGCTGATGCATGTCCCAGACATGT
1 CATGTCCCAGACATGTCTTACACTAGCTACACA-A--T-GAGGCTGATGCATGTCCCAGACATGT
*
161271521 CTTACACTAGCTCTCGTCTCAAAACCGATG
62 CTTACACTGGCTCTCGTCTCAAAACCGATG
* * * * *
161271551 CATGTCCCAGACATGTCTTCCACTAGCTTTCGCAATGTGGCCGATGCATGTCCCAGACATGTCTT
1 CATGTCCCAGACATGTCTTACACTAGC-TACACAATGAGGCTGATGCATGTCCCAGACATGTCTT
*
161271616 ACGCTGGC
65 ACACTGGC
161271624 GCACATATCA
Statistics
Matches: 143, Mismatches: 18, Indels: 13
0.82 0.10 0.07
Matches are distributed among these distances:
90 1 0.01
91 1 0.01
92 46 0.32
93 16 0.11
94 75 0.52
95 1 0.01
96 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (91 bp):
CATGTCCCAGACATGTCTTACACTAGCTACACAATGAGGCTGATGCATGTCCCAGACATGTCTTA
CACTGGCTCTCGTCTCAAAACCGATG
Found at i:161275808 original size:41 final size:42
Alignment explanation
Indices: 161275763--161275891 Score: 158
Period size: 41 Copynumber: 3.1 Consensus size: 42
161275753 GTTCATTAAG
* * *
161275763 TGGAAAATGAATT-TTTAAAATGATTTTATGGATTAG-TTATA
1 TGGAAAATGAATTATATAAAATGATTATAT-GAATAGATTATA
161275804 TGGAAAATG-ATTATATAAAATGATTATATGAATAGATTATA
1 TGGAAAATGAATTATATAAAATGATTATATGAATAGATTATA
* * * *
161275845 TGTAAAATGAA-TATATAAATTGATTATTTGAATCGATTATA
1 TGGAAAATGAATTATATAAAATGATTATATGAATAGATTATA
161275886 TGGAAA
1 TGGAAA
161275892 TAGAAATACA
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
40 8 0.10
41 68 0.88
42 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.16, T:0.40
Consensus pattern (42 bp):
TGGAAAATGAATTATATAAAATGATTATATGAATAGATTATA
Found at i:161275823 original size:13 final size:13
Alignment explanation
Indices: 161275807--161275871 Score: 69
Period size: 13 Copynumber: 4.8 Consensus size: 13
161275797 AGTTATATGG
161275807 AAAATGATTATAT
1 AAAATGATTATAT
161275820 AAAATGATTATAT
1 AAAATGATTATAT
*
161275833 -GAATAGATTATATGT
1 AAAAT-GATTATA--T
*
161275848 AAAATGAATATAT
1 AAAATGATTATAT
*
161275861 AAATTGATTAT
1 AAAATGATTAT
161275872 TTGAATCGAT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
12 3 0.07
13 30 0.70
15 7 0.16
16 3 0.07
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (13 bp):
AAAATGATTATAT
Found at i:161275830 original size:28 final size:27
Alignment explanation
Indices: 161275799--161275871 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 27
161275789 TATGGATTAG
161275799 TTATATGGAAAATGATTATATAAAATGA
1 TTATAT-GAAAATGATTATATAAAATGA
*
161275827 TTATATGAATA-GATTATATGTAAAATGA
1 TTATATGAAAATGATTATA--TAAAATGA
* *
161275855 ATATAT-AAATTGATTAT
1 TTATATGAAAATGATTAT
161275872 TTGAATCGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
26 7 0.18
27 6 0.16
28 25 0.66
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (27 bp):
TTATATGAAAATGATTATATAAAATGA
Found at i:161278666 original size:34 final size:33
Alignment explanation
Indices: 161278609--161278684 Score: 82
Period size: 34 Copynumber: 2.3 Consensus size: 33
161278599 CAAGATGATG
** *
161278609 AATAAGACCATAGTTGGGCTATGGCAAATCGAAT
1 AATAAGACCATAACTAGGCTATGGCAAAT-GAAT
* **
161278643 AATAAGACCATAACTAGGTTATGGCATGTGAAT
1 AATAAGACCATAACTAGGCTATGGCAAATGAAT
161278676 -ATAAGACCA
1 AATAAGACCA
161278685 CAGTAGGGCC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
32 9 0.25
33 4 0.11
34 23 0.64
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (33 bp):
AATAAGACCATAACTAGGCTATGGCAAATGAAT
Found at i:161283687 original size:38 final size:40
Alignment explanation
Indices: 161283540--161283755 Score: 265
Period size: 40 Copynumber: 5.4 Consensus size: 40
161283530 CGAATGGTAT
* * * * * *
161283540 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* * *
161283581 CCGGGTCAATTCCTGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
161283621 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
*
161283661 CC-GGTTAAGT-CCTAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * *
161283699 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAATTACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
161283739 CCGGGCTATGTCCCGAA
1 CCGGGTTAAGTCCCGAA
161283756 AGACAATCGA
Statistics
Matches: 153, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
38 29 0.19
39 16 0.10
40 85 0.56
41 23 0.15
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:161283699 original size:78 final size:79
Alignment explanation
Indices: 161283540--161283742 Score: 282
Period size: 78 Copynumber: 2.6 Consensus size: 79
161283530 CGAATGGTAT
* * * * * *
161283540 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCTGAAGGCATTT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAACC-GGTCAAGTCCTGAAGGCATTT
161283605 GTGCGAGTTACCAAAA
64 GTGCGAGTTACCAAAA
* *
161283621 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGTTAAGTCCT-AAGGCATTTGT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAACCGGTCAAGTCCTGAAGGCATTTGT
161283685 GCGAGTTACCAAAA
66 GCGAGTTACCAAAA
* * *
161283699 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAATTACTATAACCGG
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAACCGG
161283743 GCTATGTCCC
Statistics
Matches: 110, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
78 65 0.59
79 9 0.08
80 10 0.09
81 26 0.24
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAACCGGTCAAGTCCTGAAGGCATTTGT
GCGAGTTACCAAAA
Found at i:161291687 original size:41 final size:40
Alignment explanation
Indices: 161291593--161291769 Score: 195
Period size: 41 Copynumber: 4.5 Consensus size: 40
161291583 AAGCCAAGTA
* * *
161291593 CCTTCGGGATTTA-ACCGGATATAGCTACTCG--CTCAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACACAATG
*
161291631 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACACAATG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACACAATG
* *
161291672 CCTTCGGGACTTAGCCCGGATGTAATAC-CGCACA-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTACTCGCACACAATG
* * *
161291710 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACACAATG
161291751 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
161291770 TTATCATCCA
Statistics
Matches: 120, Mismatches: 11, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
38 39 0.32
39 23 0.19
40 6 0.05
41 52 0.43
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACACAATG
Found at i:161299714 original size:40 final size:40
Alignment explanation
Indices: 161299625--161299802 Score: 231
Period size: 40 Copynumber: 4.5 Consensus size: 40
161299615 AAGCCAAGTA
* * *
161299625 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
161299663 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
161299703 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
161299743 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
161299784 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
161299803 TTATCATCCA
Statistics
Matches: 126, Mismatches: 8, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
38 13 0.10
39 17 0.13
40 68 0.54
41 24 0.19
42 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:161314908 original size:81 final size:81
Alignment explanation
Indices: 161314730--161315193 Score: 389
Period size: 81 Copynumber: 5.6 Consensus size: 81
161314720 ATTAAATCAA
* * **
161314730 AATAAAATCTGTTAAACTGCGGGAATAAATCCCGAAACAGAATTATTTGA-TTAAGTCTTCTCA-
1 AATAAAATCTATTAAACGGCGGGAATAAATCCCGAAACAG-ATT-TTCAATTTAA---TTC-CAT
*
161314793 TTTGGAAACAAAATTAAAATAG
60 TTTGGAAACAAAATTAAAATCG
* * * *
161314815 AATAAAATCTATTAAAGGGCGAGAATAAATACCGAAACAGATTTTCAATTTAATTCTATTTTGGA
1 AATAAAATCTATTAAACGGCGGGAATAAATCCCGAAACAGATTTTCAATTTAATTCCATTTTGGA
*
161314880 AATAAAATTAAAATCG
66 AACAAAATTAAAATCG
* * *
161314896 AATAAAATCTATTAAACAGCGGGAATAAATCCCGAAACAAATTTTCAATTTAATTCCATTTTAGA
1 AATAAAATCTATTAAACGGCGGGAATAAATCCCGAAACAGATTTTCAATTTAATTCCATTTTGGA
161314961 AACAAAATTAAAATCG
66 AACAAAATTAAAATCG
* * * *
161314977 AATAAAATCTGTTAAACGGAGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAATACTCA-T
1 AATAAAATCTATTAAACGGCGGGAATAAATCCCGAAACAGA--TT-TTCAA-TTTAATTC-CATT
** *
161315041 TTGGAAACAAAAAAAAAATGG
61 TTGGAAACAAAATTAAAATCG
* * * * ** * * *
161315062 AATAAAATTTGTTGAATGGTAGGAATAAAT-CCTAGAACAGATTTTATTTAATTTTTAATACTCA
1 AATAAAATCTATTAAACGGCGGGAATAAATCCCGA-AACAGA--TT-TTCAA--TTTAATTC-CA
* *
161315126 -TTTGGAAACAAAATAAAAAATGG
59 TTTTGGAAACAAAAT-TAAAATCG
* * * * * *
161315149 AATAAAACCTGTTAAACGGTGAGAATAAATCTCGAAATAGATTTT
1 AATAAAATCTATTAAACGGCGGGAATAAATCCCGAAACAGATTTT
161315194 ATTTCATTTT
Statistics
Matches: 324, Mismatches: 44, Indels: 23
0.83 0.11 0.06
Matches are distributed among these distances:
80 1 0.00
81 133 0.41
83 5 0.02
84 16 0.05
85 103 0.32
86 27 0.08
87 37 0.11
88 2 0.01
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (81 bp):
AATAAAATCTATTAAACGGCGGGAATAAATCCCGAAACAGATTTTCAATTTAATTCCATTTTGGA
AACAAAATTAAAATCG
Found at i:161315342 original size:22 final size:23
Alignment explanation
Indices: 161315315--161315358 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
161315305 TTGCGAACAA
161315315 AAATATGTAAGTATA-AATAAAC
1 AAATATGTAAGTATATAATAAAC
* *
161315337 AAATATTTATGTATATAATAAA
1 AAATATGTAAGTATATAATAAA
161315359 ATGAATTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (23 bp):
AAATATGTAAGTATATAATAAAC
Found at i:161315829 original size:20 final size:20
Alignment explanation
Indices: 161315801--161315854 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
161315791 TTTAAAGAGG
* * *
161315801 AAATTAAATCAATTTGATTA
1 AAATCAAATCAAATTGACTA
161315821 AAATCAAATCAAATTGACTA
1 AAATCAAATCAAATTGACTA
* *
161315841 GAATCAAATAAAAT
1 AAATCAAATCAAAT
161315855 CAGGATATAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.56, C:0.09, G:0.06, T:0.30
Consensus pattern (20 bp):
AAATCAAATCAAATTGACTA
Found at i:161320970 original size:40 final size:40
Alignment explanation
Indices: 161320921--161321088 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
161320911 TCTTCGGAAT
* * *
161320921 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
161320960 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
161321000 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
161321040 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
161321080 TTAGCCCGG
1 TTAGCCCGG
161321089 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:161326906 original size:2 final size:2
Alignment explanation
Indices: 161326899--161326937 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
161326889 TCGATCGGAG
161326899 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
161326938 GTACGCACAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:161327060 original size:29 final size:29
Alignment explanation
Indices: 161327028--161327100 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
161327018 CTTCGAGCTC
161327028 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
161327057 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
161327086 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
161327101 ATCTCGTCAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:161334948 original size:29 final size:29
Alignment explanation
Indices: 161334915--161334987 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
161334905 CTTCGAGCTC
161334915 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
161334944 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
161334973 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
161334988 ATCGTCACCG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:161339234 original size:40 final size:40
Alignment explanation
Indices: 161339189--161339355 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
161339179 CGGAATATAA
161339189 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
161339229 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
161339269 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
161339309 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
161339348 CCGGATAT
1 CCGGATAT
161339356 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:161339339 original size:80 final size:79
Alignment explanation
Indices: 161339189--161339355 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
161339179 CGGAATATAA
* *
161339189 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
161339254 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
161339269 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
161339331 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
161339348 CCGGATAT
1 CCGGATAT
161339356 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:161340203 original size:17 final size:19
Alignment explanation
Indices: 161340180--161340225 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
161340170 AAGAAGCATG
161340180 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
161340198 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
161340216 AATCATGCTC
1 AATCATGCTC
161340226 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:161346711 original size:29 final size:29
Alignment explanation
Indices: 161346683--161346784 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
161346673 CCTCCGAGCT
** * * *
161346683 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
161346712 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
161346741 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
161346770 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
161346785 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:161354010 original size:27 final size:27
Alignment explanation
Indices: 161353980--161354120 Score: 182
Period size: 27 Copynumber: 5.2 Consensus size: 27
161353970 GTGATGAAGT
* *
161353980 CACCAGATATAGATATTGTGGTAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
161354007 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
161354034 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
161354061 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
161354088 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
161354115 CACCAG
1 CACCAG
161354121 GACACTTCCT
Statistics
Matches: 102, Mismatches: 5, Indels: 14
0.84 0.04 0.12
Matches are distributed among these distances:
26 9 0.09
27 89 0.87
28 4 0.04
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:161354052 original size:54 final size:54
Alignment explanation
Indices: 161353980--161354120 Score: 239
Period size: 54 Copynumber: 2.6 Consensus size: 54
161353970 GTGATGAAGT
* * *
161353980 CACCAGATATAGAT-ATTGTGGTAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
161354034 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
161354088 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
161354121 GACACTTCCT
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
53 4 0.05
54 79 0.95
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:161356353 original size:15 final size:16
Alignment explanation
Indices: 161356333--161356393 Score: 63
Period size: 16 Copynumber: 3.6 Consensus size: 16
161356323 TAATATAAAG
161356333 TGAATTGAAATATAT-
1 TGAATTGAAATATATC
161356348 TGAATTGAGAATATATC
1 TGAATTGA-AATATATC
161356365 TGATTAGTTGAAATATATAC
1 TGA--A-TTGAAATATAT-C
161356385 TG-ATTGAAA
1 TGAATTGAAA
161356394 ACTGAAAGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
15 8 0.20
16 13 0.32
17 4 0.10
19 8 0.20
20 7 0.17
ACGTcount: A:0.43, C:0.03, G:0.16, T:0.38
Consensus pattern (16 bp):
TGAATTGAAATATATC
Found at i:161356362 original size:16 final size:15
Alignment explanation
Indices: 161356333--161356382 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 15
161356323 TAATATAAAG
161356333 TGAATTGAAATATAT
1 TGAATTGAAATATAT
161356348 TGAATTGAGAATATAT
1 TGAATTGA-AATATAT
161356364 CTGATTAGTTGAAATATAT
1 -TGA--A-TTGAAATATAT
161356383 ACTGATTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 8 0.27
16 7 0.23
17 3 0.10
19 8 0.27
20 4 0.13
ACGTcount: A:0.42, C:0.02, G:0.16, T:0.40
Consensus pattern (15 bp):
TGAATTGAAATATAT
Found at i:161356387 original size:20 final size:20
Alignment explanation
Indices: 161356352--161356389 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
161356342 ATATATTGAA
161356352 TTGAGAATATATCTGATTAG
1 TTGAGAATATATCTGATTAG
161356372 TTGA-AATATATACTGATT
1 TTGAGAATATAT-CTGATT
161356390 GAAAACTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (20 bp):
TTGAGAATATATCTGATTAG
Found at i:161356747 original size:18 final size:18
Alignment explanation
Indices: 161356724--161356819 Score: 113
Period size: 18 Copynumber: 5.3 Consensus size: 18
161356714 TAAATAAAGG
161356724 TACTGAATAACTGATTAT
1 TACTGAATAACTGATTAT
* * *
161356742 TACTGAATAATTGACTGT
1 TACTGAATAACTGATTAT
* *
161356760 TACTGAATAAAC-GACTGT
1 TACTGAAT-AACTGATTAT
*
161356778 TACTGAATAAATGATTAT
1 TACTGAATAACTGATTAT
*
161356796 TACTGAATAACTGATTAA
1 TACTGAATAACTGATTAT
161356814 TACTGA
1 TACTGA
161356820 TGATTGACTG
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
17 2 0.03
18 63 0.94
19 2 0.03
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (18 bp):
TACTGAATAACTGATTAT
Found at i:161365398 original size:2 final size:2
Alignment explanation
Indices: 161365391--161365427 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
161365381 GAGTATTGAC
161365391 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
161365428 CACTAGCGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:161368690 original size:14 final size:15
Alignment explanation
Indices: 161368671--161368699 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
161368661 AAAGTTAAAA
161368671 TGGA-TTTTCTTGTC
1 TGGATTTTTCTTGTC
161368685 TGGATTTTTCTTGTC
1 TGGATTTTTCTTGTC
161368700 CTTGAAAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.07, C:0.14, G:0.21, T:0.59
Consensus pattern (15 bp):
TGGATTTTTCTTGTC
Found at i:161374640 original size:40 final size:40
Alignment explanation
Indices: 161374572--161374734 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
161374562 CGGGATTTAA
** *
161374572 CCGGATATAAC-ACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
161374611 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
161374651 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
161374691 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
161374731 CCGG
1 CCGG
161374735 GTATCATTCA
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
39 9 0.09
40 93 0.89
41 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:161374694 original size:80 final size:79
Alignment explanation
Indices: 161374558--161374734 Score: 205
Period size: 80 Copynumber: 2.2 Consensus size: 79
161374548 GAATCACGTA
* * * **
161374558 CCTTCGGGATTTA-ACCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CCTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
* *
161374622 AACTTGCACAATTG
66 AACTAGCACAAATG
* ** *
161374636 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAAC-ACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
* *
161374700 ATCACTAGCATAAATG
64 ATAACTAGCACAAATG
161374716 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
161374735 GTATCATTCA
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 11 0.13
79 11 0.13
80 58 0.71
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATG
Found at i:161383673 original size:14 final size:14
Alignment explanation
Indices: 161383654--161383682 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
161383644 ATAGGCTTTA
161383654 GGCCCATTCGTATT
1 GGCCCATTCGTATT
161383668 GGCCCATTCGTATT
1 GGCCCATTCGTATT
161383682 G
1 G
161383683 TTATCCATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.28, G:0.24, T:0.34
Consensus pattern (14 bp):
GGCCCATTCGTATT
Found at i:161383808 original size:27 final size:27
Alignment explanation
Indices: 161383740--161383810 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
161383730 CGACTTGTAA
* *
161383740 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
161383767 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
161383794 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
161383811 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:161383836 original size:54 final size:53
Alignment explanation
Indices: 161383778--161383916 Score: 136
Period size: 54 Copynumber: 2.6 Consensus size: 53
161383768 ATTACCGTTT
161383778 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
161383832 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
* *** * *
161383886 TACCATGGTTTGAAAAATTACTAAAATACCC
1 TACCCTCAATTGTAAAATTACCAAAATACCC
161383917 CTGTAGGGTA
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
53 27 0.36
54 39 0.52
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:161383903 original size:26 final size:27
Alignment explanation
Indices: 161383794--161383916 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
161383784 CAATTTACAG
161383794 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
161383821 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
161383848 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
161383875 AATTACCAAAATA-CCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
161383901 AATTACTAAAATACCC
1 AATTACCAAAATACCC
161383917 CTGTAGGGTA
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 21 0.26
27 61 0.74
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:161383929 original size:53 final size:53
Alignment explanation
Indices: 161383794--161383942 Score: 149
Period size: 53 Copynumber: 2.8 Consensus size: 53
161383784 CAATTTACAG
* ** * * *
161383794 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATA-CCATGGTTTGAAA
* **
161383848 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCATGGTTTGAAA
* **
161383901 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACC
161383943 CTTGTGGGGT
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
52 3 0.04
53 43 0.52
54 36 0.43
55 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (53 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCATGGTTTGAAA
Found at i:161383933 original size:27 final size:27
Alignment explanation
Indices: 161383899--161383960 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
161383889 CATGGTTTGA
161383899 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
161383926 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
161383953 AAAATTAC
1 AAAATTAC
161383961 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:161383956 original size:80 final size:81
Alignment explanation
Indices: 161383794--161383962 Score: 202
Period size: 80 Copynumber: 2.1 Consensus size: 81
161383784 CAATTTACAG
* **
161383794 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
**
161383859 TACCCTTTGTTTATAA
66 TACCCTTTGTGGATAA
* * *
161383875 AATTACCAAAATA-CCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
*
161383937 AATACCC-TTGTGGGGTAA
64 AATACCCTTTGT-GGATAA
161383955 AATTACCA
1 AATTACCA
161383963 TTTTGCCCCT
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
79 6 0.08
80 56 0.74
81 14 0.18
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTGGATAA
Found at i:161384697 original size:27 final size:26
Alignment explanation
Indices: 161384606--161384687 Score: 128
Period size: 27 Copynumber: 3.1 Consensus size: 26
161384596 GCGTAGAAAA
*
161384606 AAATTACCCCTAAAGAGCAAAATTACT
1 AAATTA-CCCTAAAGAGCAAAATTACC
161384633 AAATTACCCTAAAGAGCAAAATTACC
1 AAATTACCCTAAAGAGCAAAATTACC
*
161384659 GAAATTACCCTAAATAGCAAAATTACC
1 -AAATTACCCTAAAGAGCAAAATTACC
161384686 AA
1 AA
161384688 TATACCCCTA
Statistics
Matches: 52, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
26 21 0.40
27 31 0.60
ACGTcount: A:0.50, C:0.22, G:0.07, T:0.21
Consensus pattern (26 bp):
AAATTACCCTAAAGAGCAAAATTACC
Found at i:161387976 original size:27 final size:27
Alignment explanation
Indices: 161387908--161387978 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
161387898 CGACTTGTAA
* *
161387908 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
161387935 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
161387962 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
161387979 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:161388004 original size:54 final size:53
Alignment explanation
Indices: 161387946--161388084 Score: 136
Period size: 54 Copynumber: 2.6 Consensus size: 53
161387936 ATTACCGTTT
161387946 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
161388000 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
* *** * *
161388054 TACCATGGTTTGAAAAATTACTAAAATACCC
1 TACCCTCAATTGTAAAATTACCAAAATACCC
161388085 CTGTAGGGTA
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
53 27 0.36
54 39 0.52
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:161388071 original size:26 final size:27
Alignment explanation
Indices: 161387962--161388084 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
161387952 CAATTTACAG
161387962 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
161387989 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
161388016 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
161388043 AATTACCAAAATA-CCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
161388069 AATTACTAAAATACCC
1 AATTACCAAAATACCC
161388085 CTGTAGGGTA
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 21 0.26
27 61 0.74
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:161388097 original size:53 final size:53
Alignment explanation
Indices: 161387962--161388110 Score: 149
Period size: 53 Copynumber: 2.8 Consensus size: 53
161387952 CAATTTACAG
* ** * * *
161387962 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATA-CCATGGTTTGAAA
* **
161388016 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCATGGTTTGAAA
* **
161388069 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACC
161388111 CTTGTGGGGT
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
52 3 0.04
53 43 0.52
54 36 0.43
55 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (53 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCATGGTTTGAAA
Found at i:161388101 original size:27 final size:27
Alignment explanation
Indices: 161388067--161388128 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
161388057 CATGGTTTGA
161388067 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
161388094 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
161388121 AAAATTAC
1 AAAATTAC
161388129 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:161388124 original size:80 final size:81
Alignment explanation
Indices: 161387962--161388130 Score: 202
Period size: 80 Copynumber: 2.1 Consensus size: 81
161387952 CAATTTACAG
* **
161387962 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
**
161388027 TACCCTTTGTTTATAA
66 TACCCTTTGTGGATAA
* * *
161388043 AATTACCAAAATA-CCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
*
161388105 AATACCC-TTGTGGGGTAA
64 AATACCCTTTGT-GGATAA
161388123 AATTACCA
1 AATTACCA
161388131 TTTTGCCCCT
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
79 6 0.08
80 56 0.74
81 14 0.18
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTGGATAA
Found at i:161388781 original size:28 final size:28
Alignment explanation
Indices: 161388748--161388844 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
161388738 GCGTAGATCA
161388748 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
161388776 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
161388804 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
161388832 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
161388845 GGGTTTAAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
26 3 0.05
27 8 0.12
28 54 0.83
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:161392108 original size:27 final size:27
Alignment explanation
Indices: 161392040--161392110 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
161392030 CGACTTGTAA
* *
161392040 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
161392067 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
161392094 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
161392111 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:161392117 original size:27 final size:27
Alignment explanation
Indices: 161392094--161392218 Score: 162
Period size: 27 Copynumber: 4.6 Consensus size: 27
161392084 CAATTTACAG
161392094 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
161392121 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
161392148 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
**
161392175 AATTACCAAAATACCAATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
161392202 AATTACTAAAATACCCT
1 AATTACCAAAATACCCT
161392219 GTAGGGTAAA
Statistics
Matches: 82, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
27 81 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:161392136 original size:54 final size:53
Alignment explanation
Indices: 161392078--161392189 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 53
161392068 ATTACCGTTT
161392078 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
161392132 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
161392186 TACC
1 TACC
161392190 AATGGTTTGA
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
53 2 0.04
54 39 0.78
55 7 0.14
56 2 0.04
ACGTcount: A:0.40, C:0.22, G:0.06, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:161392163 original size:81 final size:80
Alignment explanation
Indices: 161392078--161392244 Score: 185
Period size: 81 Copynumber: 2.1 Consensus size: 80
161392068 ATTACCGTTT
* **
161392078 TACCCTCAATTTACAGAATTACCAAAATACCCTTGGTTT-ATAAAATCACCAAAATACCCCTGGT
1 TACCCTCAATTTACAAAATTACCAAAATACCAATGGTTTGA-AAAATCACCAAAATA-CCCT-GT
**
161392142 -TTGTAAAATTACTAAAA
63 AGGGTAAAATTACTAAAA
*** * * *
161392159 TACCCTTTGTTTATAAAATTACCAAAATACCAATGGTTTGAAAAATTACTAAAATACCCTGTAGG
1 TACCCTCAATTTACAAAATTACCAAAATACCAATGGTTTGAAAAATCACCAAAATACCCTGTAGG
*
161392224 GTAAAATTACTGAAA
66 GTAAAATTACTAAAA
161392239 TACCCT
1 TACCCT
161392245 TGTGGGGTAA
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
79 2 0.03
80 24 0.33
81 45 0.62
82 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (80 bp):
TACCCTCAATTTACAAAATTACCAAAATACCAATGGTTTGAAAAATCACCAAAATACCCTGTAGG
GTAAAATTACTAAAA
Found at i:161392196 original size:54 final size:54
Alignment explanation
Indices: 161392094--161392218 Score: 196
Period size: 54 Copynumber: 2.3 Consensus size: 54
161392084 CAATTTACAG
* ** *
161392094 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAA
* *
161392148 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCAATGGTTTGAAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAA
161392202 AATTACTAAAATACCCT
1 AATTACTAAAATACCCT
161392219 GTAGGGTAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAA
Found at i:161392239 original size:26 final size:27
Alignment explanation
Indices: 161392200--161392260 Score: 97
Period size: 26 Copynumber: 2.3 Consensus size: 27
161392190 AATGGTTTGA
161392200 AAAATTACTAAAATACCC-TGTAGGGT
1 AAAATTACTAAAATACCCTTGTAGGGT
* *
161392226 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCTTGTAGGGT
161392253 AAAATTAC
1 AAAATTAC
161392261 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 17 0.53
27 15 0.47
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTTGTAGGGT
Found at i:161392260 original size:80 final size:81
Alignment explanation
Indices: 161392094--161392262 Score: 193
Period size: 80 Copynumber: 2.1 Consensus size: 81
161392084 CAATTTACAG
** **
161392094 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCAATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
**
161392159 TACCCTTTGTTTATAA
66 TACCCTTTGTGGATAA
* * *
161392175 AATTACCAAAATACCAATGGTTTGA-AAAATTACTAAAATA-CCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCAATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
*
161392237 AATACCC-TTGTGGGGTAA
64 AATACCCTTTGT-GGATAA
161392255 AATTACCA
1 AATTACCA
161392263 TTTTGCCCCT
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
79 6 0.08
80 34 0.45
81 34 0.45
82 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCAATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTGGATAA
Found at i:161392922 original size:27 final size:28
Alignment explanation
Indices: 161392877--161392972 Score: 144
Period size: 27 Copynumber: 3.5 Consensus size: 28
161392867 GCGTAGATCA
161392877 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
161392905 TGAAATTA-CCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
161392932 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
161392960 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
161392973 GGGTTTAAAT
Statistics
Matches: 63, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
26 3 0.05
27 34 0.54
28 26 0.41
ACGTcount: A:0.46, C:0.25, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:161415323 original size:54 final size:54
Alignment explanation
Indices: 161415251--161415354 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 54
161415241 TTAACTGGTC
* * * *
161415251 CATTAAATGTCAAAATTTAACACAATAGATAAATCAAAATGAGTACTATAGCTT
1 CATTAAATCTCAAAATTTAACACAATAGATAAACCAAAACGAGTAATATAGCTT
* *
161415305 CATTAAATCTCAATATTTAACACAATAGATAGACCAAAACGAGTAATATA
1 CATTAAATCTCAAAATTTAACACAATAGATAAACCAAAACGAGTAATATA
161415355 TGGGTTTGGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.49, C:0.14, G:0.09, T:0.28
Consensus pattern (54 bp):
CATTAAATCTCAAAATTTAACACAATAGATAAACCAAAACGAGTAATATAGCTT
Found at i:161415476 original size:127 final size:128
Alignment explanation
Indices: 161415249--161415480 Score: 315
Period size: 127 Copynumber: 1.8 Consensus size: 128
161415239 GTTTAACTGG
* * * * * * *
161415249 TCCATTAAATGTCAAAATTTAACACAATAGATAAATCAAAATGAGTACTATAGCTTCATTAAATC
1 TCCATTAAATCTCAAAATTTAACAAAATAGATAAATCAAAACGAGTAATATAGATACATTAAATA
*
161415314 TCAATATTTAACACAATAGATAGACCAAAACGAGTAATATATGGGTTTGGTGGATTAAATTGC
66 TCAATATTTAACACAATAAATAGACCAAAACGAGTAATATATGGGTTTGGTGGATTAAATTGC
*
161415377 TCCATTAAATCTCAAATTTTAACAAAATAGATAAATC-AAACGAGTAATAT-GAATACATTAAAT
1 TCCATTAAATCTCAAAATTTAACAAAATAGATAAATCAAAACGAGTAATATAG-ATACATTAAAT
* * * * *
161415440 ATTAGTATTTAACACAATAAATATATCAAAATGAGTAATAT
65 ATCAATATTTAACACAATAAATAGACCAAAACGAGTAATAT
161415481 GAGAATTTGA
Statistics
Matches: 89, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
126 1 0.01
127 54 0.61
128 34 0.38
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (128 bp):
TCCATTAAATCTCAAAATTTAACAAAATAGATAAATCAAAACGAGTAATATAGATACATTAAATA
TCAATATTTAACACAATAAATAGACCAAAACGAGTAATATATGGGTTTGGTGGATTAAATTGC
Found at i:161415506 original size:127 final size:128
Alignment explanation
Indices: 161415249--161415512 Score: 309
Period size: 127 Copynumber: 2.1 Consensus size: 128
161415239 GTTTAACTGG
* * * * * * *
161415249 TCCATTAAATGTCAAAATTTAACACAATAGATAAATCAAAATGAGTACTATAGCTTCATTAAATC
1 TCCATTAAATCTCAAAATTTAACAAAATAGATAAATCAAAACGAGTAATATAGATACATTAAATA
* ** * * *
161415314 TCAATATTTAACACAATAGATAGACCAAAACGAGTAATATATGGGTTTGGTGGATTAAATTGC
66 TCAATATTTAACACAATAAATAGACCAAAACGAGTAATATATGAATTTGATAGATTAAATCGC
*
161415377 TCCATTAAATCTCAAATTTTAACAAAATAGATAAATC-AAACGAGTAATAT-GAATACATTAAAT
1 TCCATTAAATCTCAAAATTTAACAAAATAGATAAATCAAAACGAGTAATATAG-ATACATTAAAT
* * * * * *
161415440 ATTAGTATTTAACACAATAAATATATCAAAATGAGTAATATGA-GAATTTGATAGATTTAATCGC
65 ATCAATATTTAACACAATAAATAGACCAAAACGAGTAATAT-ATGAATTTGATAGATTAAATCGC
161415504 TCCATTAAA
1 TCCATTAAA
161415513 ATTTGATTTT
Statistics
Matches: 114, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
126 1 0.01
127 78 0.68
128 35 0.31
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.31
Consensus pattern (128 bp):
TCCATTAAATCTCAAAATTTAACAAAATAGATAAATCAAAACGAGTAATATAGATACATTAAATA
TCAATATTTAACACAATAAATAGACCAAAACGAGTAATATATGAATTTGATAGATTAAATCGC
Found at i:161415899 original size:2 final size:2
Alignment explanation
Indices: 161415892--161415922 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
161415882 AAGTTAGAGA
*
161415892 AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
161415923 GATGAGTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:161417167 original size:20 final size:17
Alignment explanation
Indices: 161417126--161417160 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
161417116 TTTTAAAATG
161417126 TAAATTTAGTAACATGA
1 TAAATTTAGTAACATGA
161417143 TAAATTTAGTAACATGA
1 TAAATTTAGTAACATGA
161417160 T
1 T
161417161 GAAAAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (17 bp):
TAAATTTAGTAACATGA
Found at i:161419100 original size:35 final size:35
Alignment explanation
Indices: 161419056--161419222 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
161419046 TCCTCATTGA
** *
161419056 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
161419091 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
161419131 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
161419166 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
161419201 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
161419223 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:161419139 original size:75 final size:73
Alignment explanation
Indices: 161419051--161419222 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
161419041 GGTTTTCCTC
** * * **
161419051 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
161419115 TCAGTATGG
65 TCAGTATGG
*
161419124 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
161419189 CTCAGTATGG
64 CTCAGTATGG
161419199 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
161419223 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:161426623 original size:40 final size:35
Alignment explanation
Indices: 161426538--161426703 Score: 187
Period size: 35 Copynumber: 4.7 Consensus size: 35
161426528 TTTCCTCATT
** *
161426538 GAAATACCATACCTACATTTTTCAACTCGGTATGG
1 GAAATACCATACCTACATTTCACAACTCAGTATGG
* **
161426573 GAAATGCCATACCTACATTTCTTAACTCAGTATGG
1 GAAATACCATACCTACATTTCACAACTCAGTATGG
*
161426608 ATTTGATAATACCATACCTACATTTCACAGCTCAGTAT-G
1 ----GA-AATACCATACCTACATTTCACAACTCAGTATGG
161426647 GATAATACCATACCTACATTTCACAACTCAGTAT-G
1 GA-AATACCATACCTACATTTCACAACTCAGTATGG
161426682 G--ATACCATACCTACATTTCACA
1 GAAATACCATACCTACATTTCACA
161426704 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 9, Indels: 13
0.84 0.06 0.09
Matches are distributed among these distances:
32 21 0.18
35 66 0.56
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
GAAATACCATACCTACATTTCACAACTCAGTATGG
Found at i:161426623 original size:75 final size:74
Alignment explanation
Indices: 161426536--161426684 Score: 210
Period size: 75 Copynumber: 2.0 Consensus size: 74
161426526 GTTTTCCTCA
** * * **
161426536 TTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAACT
1 TTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAACT
161426600 CAGTATGGAT
65 CAGTATGGAT
*
161426610 TTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAACT
1 TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
161426675 CAGTATGGAT
65 CAGTATGGAT
161426685 ACCATACCTA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
74 7 0.11
75 59 0.89
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.32
Consensus pattern (74 bp):
TTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACTC
AGTATGGAT
Found at i:161428478 original size:40 final size:40
Alignment explanation
Indices: 161428426--161428559 Score: 110
Period size: 40 Copynumber: 3.4 Consensus size: 40
161428416 ATGATATCGC
* *
161428426 GGCTAAG-CCCGAAGACAATTATGCTGGAAATTATATCCG
1 GGCTAAGACCCGAAGACAATTATGCTAGAAACTATATCCG
* * * ***
161428465 GGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTATATCCG
1 GGCTAAGACCCGAAGACAATTATGCTAGAAACTATATCCG
* * * ** * *
161428505 GGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATTCTATCCG
1 GGCTAAGACCCGAAGACAATT-ATGCTAGAAACTATATCCG
161428545 GGCTAAGACCCGAAG
1 GGCTAAGACCCGAAG
161428560 GCATTTGTGC
Statistics
Matches: 79, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 9 0.11
40 70 0.89
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (40 bp):
GGCTAAGACCCGAAGACAATTATGCTAGAAACTATATCCG
Done.