Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 522 of 770
Found at i:162033156 original size:2 final size:2
Alignment explanation
Indices: 162033149--162033187 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
162033139 GATAATGATT
162033149 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
162033188 TCGAATGTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:162034174 original size:14 final size:14
Alignment explanation
Indices: 162034155--162034182 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
162034145 ACCCCCTAGT
162034155 GTGAAAAATTTCTA
1 GTGAAAAATTTCTA
162034169 GTGAAAAATTTCTA
1 GTGAAAAATTTCTA
162034183 TCTTTTTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (14 bp):
GTGAAAAATTTCTA
Found at i:162038738 original size:16 final size:15
Alignment explanation
Indices: 162038699--162038738 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
162038689 GTCGACAACC
162038699 CACTTTTTGGCTTTT
1 CACTTTTTGGCTTTT
*
162038714 CAGCCTTTTGGCTTTT
1 CA-CTTTTTGGCTTTT
162038730 CGACTTTTT
1 C-ACTTTTT
162038739 AGCCTTTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 2 0.10
16 18 0.86
17 1 0.05
ACGTcount: A:0.07, C:0.23, G:0.15, T:0.55
Consensus pattern (15 bp):
CACTTTTTGGCTTTT
Found at i:162047080 original size:40 final size:40
Alignment explanation
Indices: 162047036--162047619 Score: 864
Period size: 40 Copynumber: 14.6 Consensus size: 40
162047026 CCAGCATGAT
* * * * * *
162047036 TGCTCTTCAGGACCTAGCCCGGATATAACACCAACACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** ** *
162047076 TGCTCTTCGGGGTTTAGCATGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
162047116 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
162047156 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
162047196 TGCTCTTCGGGACTTAACCCAGATACATCACTAGCTCGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
162047236 TGCTCTTCGGGACTTAGCCCGAATACATCACTACCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
162047276 TGCGCTTTGGGACTTAGCCCGGTTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
162047316 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
162047356 TGCTCTTCGGGACTTAACCCGGATACATCACTAGCTCGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
162047396 TGCTCTTCGGGACTTAGCCCGGTTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
162047436 TGCTCTTCGGGACTTAGCCCGAATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
162047476 TACTCTTCGGGACTTAACTCGGATACATCACTAGCTCGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
162047516 TGCT-TTCGGGACTTAGCCCGGTTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
162047555 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
162047595 TGCTCTTCGGGACATAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATA
162047620 TATATAACTC
Statistics
Matches: 489, Mismatches: 54, Indels: 2
0.90 0.10 0.00
Matches are distributed among these distances:
39 35 0.07
40 454 0.93
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:162049298 original size:40 final size:40
Alignment explanation
Indices: 162048623--162049286 Score: 1044
Period size: 40 Copynumber: 16.6 Consensus size: 40
162048613 GAGCTATATA
162048623 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
162048663 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
162048703 TAAT-CGGGCTAAGTCCCGAAGAGCATTCGAGCTAGTGATG
1 T-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
162048743 TATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
162048783 CATCTGGGCTAAGTCCC-AAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
162048822 TAACCGGGCTAAGTCCCGAAGAGCATTCGAGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * *
162048862 TATCCAGGTTAAGTCCCAAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
162048902 TATCCGGGCTAAGTCCCGAAGAGCATTCGAGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* **
162048942 TATCCGGGTTAAGTCAGGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
162048982 TATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
162049022 TAACCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
162049062 TATCCGGGCTAAGTCCCGAAGAGCATTTGAGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
162049102 TATCCGGGTTAAGTCCAGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
162049142 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAATGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
162049182 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* ** * * *
162049222 TATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
162049262 TATCCGGGCTAGGTCCCGAAGAGCA
1 TATCCGGGCTAAGTCCCGAAGAGCA
162049287 ATCATGCTGG
Statistics
Matches: 570, Mismatches: 51, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
39 38 0.07
40 530 0.93
41 2 0.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
Found at i:162050070 original size:37 final size:37
Alignment explanation
Indices: 162050020--162050239 Score: 386
Period size: 37 Copynumber: 5.9 Consensus size: 37
162050010 GGAAATATAT
162050020 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
162050057 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
162050094 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
162050131 TCCGGGTAAGACCCGATGAATACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
162050168 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
162050205 TCCGGGTAAGACCCGATAACTTCGTGTAGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
162050240 CGTCTGAGCT
Statistics
Matches: 174, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 174 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:162053374 original size:27 final size:28
Alignment explanation
Indices: 162053318--162053387 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
162053308 AAATTTGTAC
162053318 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
162053346 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
162053373 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
162053388 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:162053398 original size:27 final size:27
Alignment explanation
Indices: 162053318--162053399 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
162053308 AAATTTGTAC
* *
162053318 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
162053346 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
162053373 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
162053400 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:162058329 original size:29 final size:28
Alignment explanation
Indices: 162058295--162058397 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
162058285 TACTCAATCA
*
162058295 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
162058324 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
162058353 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
162058382 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
162058398 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:162071884 original size:40 final size:40
Alignment explanation
Indices: 162071829--162072008 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 40
162071819 TATTCGGATG
162071829 ATATCCGGGCTAAGTCCCGAAGGGC-TTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAA-GGCATTTGTGCTAGTGACT
*
162071869 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
162071909 ATATCCTGG--AAGACCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
162071947 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCAAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
162071987 ATATCC-GGCTAATTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
162072009 TACTTGGGTT
Statistics
Matches: 126, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
38 35 0.28
39 16 0.13
40 73 0.58
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:162071973 original size:78 final size:78
Alignment explanation
Indices: 162071844--162071992 Score: 230
Period size: 78 Copynumber: 1.9 Consensus size: 78
162071834 CGGGCTAAGT
* * *
162071844 CCCGAAGGGCTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGAC
1 CCCGAAGGGCTTTGTGCTAGTGACTATATCCGGGCTAAGACCCAAAGGCATTTATGCAAGTTG-C
162071908 TATATCCTGGAAGA
65 TATATCCTGGAAGA
*
162071922 CCCGAA-GGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCAAAGGCATTTGTGCAAGTTGC
1 CCCGAAGGGC-TTTGTGCTAGTGACTATATCCGGGCTAAGACCCAAAGGCATTTATGCAAGTTGC
162071986 TATATCC
65 TATATCC
162071993 GGCTAATTCC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
77 3 0.05
78 60 0.92
79 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (78 bp):
CCCGAAGGGCTTTGTGCTAGTGACTATATCCGGGCTAAGACCCAAAGGCATTTATGCAAGTTGCT
ATATCCTGGAAGA
Found at i:162073823 original size:29 final size:29
Alignment explanation
Indices: 162073754--162073872 Score: 118
Period size: 29 Copynumber: 4.2 Consensus size: 29
162073744 GTGAGCATGA
* *
162073754 ATAT-AATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAGTGGGCC
* *
162073782 ATATCAATGTGAATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAGTGGGCC
* * * *
162073811 ATAAGAATATGAACTGGG-TTAGATGAGCC
1 ATATGAATATGAATTGGGCCTAG-TGGGCC
* *
162073840 ATTTGAATAAG-ATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAGTGGGCC
162073868 ATATG
1 ATATG
162073873 CATGTATGTA
Statistics
Matches: 72, Mismatches: 16, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
28 21 0.29
29 51 0.71
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAGTGGGCC
Found at i:162090180 original size:40 final size:40
Alignment explanation
Indices: 162090053--162090182 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
162090043 ATGCTGGAAA
* * *
162090053 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
162090093 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
162090133 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
162090173 TTATATCCGG
1 TTATATCCGG
162090183 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:162098281 original size:40 final size:40
Alignment explanation
Indices: 162098154--162098283 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
162098144 TTGCTGGAAA
* * *
162098154 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
162098194 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
162098234 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
162098274 TTATATCCGG
1 TTATATCCGG
162098284 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:162101575 original size:14 final size:15
Alignment explanation
Indices: 162101551--162101580 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
162101541 GGATATCAAA
162101551 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
162101566 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
162101580 A
1 A
162101581 AGTTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:162105104 original size:40 final size:40
Alignment explanation
Indices: 162104977--162105106 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
162104967 ATGCTGGAAA
* *
162104977 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
162105017 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
162105057 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
162105097 TTATATCCGG
1 TTATATCCGG
162105107 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:162110182 original size:7 final size:7
Alignment explanation
Indices: 162110170--162113706 Score: 5689
Period size: 7 Copynumber: 506.1 Consensus size: 7
162110160 NNNNNNNNNN
162110170 CTAAACC
1 CTAAACC
162110177 CTAAACC
1 CTAAACC
162110184 CT-AACC
1 CTAAACC
162110190 CTAAACC
1 CTAAACC
162110197 CTAAACC
1 CTAAACC
162110204 CTAAACC
1 CTAAACC
162110211 CTAAACC
1 CTAAACC
162110218 CTAAACC
1 CTAAACC
162110225 CTAAACC
1 CTAAACC
162110232 CTAAACC
1 CTAAACC
162110239 CTAAACC
1 CTAAACC
162110246 CTAAACC
1 CTAAACC
162110253 CTAAACC
1 CTAAACC
162110260 CTAAAACC
1 CT-AAACC
162110268 CTAAACC
1 CTAAACC
162110275 CTAAACC
1 CTAAACC
162110282 CTAAACC
1 CTAAACC
162110289 CTAAACC
1 CTAAACC
162110296 CTAAACC
1 CTAAACC
162110303 CTAAACC
1 CTAAACC
162110310 CTAAACC
1 CTAAACC
162110317 CTAAACC
1 CTAAACC
162110324 CTAAACC
1 CTAAACC
162110331 CTAAACC
1 CTAAACC
162110338 CTAAACC
1 CTAAACC
162110345 CTAAACC
1 CTAAACC
162110352 CTAAACC
1 CTAAACC
162110359 CTAAACC
1 CTAAACC
162110366 CTAAACC
1 CTAAACC
162110373 CTAAACC
1 CTAAACC
162110380 CTAAAACC
1 CT-AAACC
162110388 CTAAAACC
1 CT-AAACC
162110396 CTAAACC
1 CTAAACC
162110403 CTAAACC
1 CTAAACC
162110410 CTAAACC
1 CTAAACC
162110417 CTAAACC
1 CTAAACC
162110424 CTAAACC
1 CTAAACC
162110431 CTAAACC
1 CTAAACC
162110438 CTAAAACC
1 CT-AAACC
162110446 CTAAACC
1 CTAAACC
162110453 CTAAACC
1 CTAAACC
162110460 CTAAAACC
1 CT-AAACC
162110468 CTAAACC
1 CTAAACC
162110475 CTAAACC
1 CTAAACC
162110482 CTAAACC
1 CTAAACC
162110489 CTAAACC
1 CTAAACC
162110496 CTAAACC
1 CTAAACC
162110503 CTAAACC
1 CTAAACC
162110510 CT-AACC
1 CTAAACC
162110516 CTAAACC
1 CTAAACC
162110523 CTAAACC
1 CTAAACC
162110530 CTAAACC
1 CTAAACC
162110537 CTAAACC
1 CTAAACC
162110544 CTAAACC
1 CTAAACC
162110551 CTAAACC
1 CTAAACC
162110558 CTAAACC
1 CTAAACC
162110565 CTAAACC
1 CTAAACC
162110572 CTAAACC
1 CTAAACC
162110579 CTAAACC
1 CTAAACC
162110586 CTAAACC
1 CTAAACC
162110593 CTAAACC
1 CTAAACC
162110600 CTAAAAACC
1 CT--AAACC
162110609 CTAAACC
1 CTAAACC
162110616 CTAAACC
1 CTAAACC
162110623 CTAAACC
1 CTAAACC
162110630 CTAAACC
1 CTAAACC
162110637 CTAAAACC
1 CT-AAACC
162110645 CTAAA-C
1 CTAAACC
162110651 CTAAACC
1 CTAAACC
162110658 CTAAACC
1 CTAAACC
162110665 CT-AACC
1 CTAAACC
162110671 CTAAACC
1 CTAAACC
162110678 CTAAACC
1 CTAAACC
162110685 CTAAACC
1 CTAAACC
162110692 CTAAACC
1 CTAAACC
162110699 CTAAACC
1 CTAAACC
162110706 CTAAACC
1 CTAAACC
162110713 CTAAACC
1 CTAAACC
162110720 CTAAACC
1 CTAAACC
162110727 CTAAACC
1 CTAAACC
162110734 CTAAACC
1 CTAAACC
162110741 CTAAACC
1 CTAAACC
162110748 CTAAACC
1 CTAAACC
162110755 CTAAACC
1 CTAAACC
162110762 CTAAA-C
1 CTAAACC
162110768 CTAAACC
1 CTAAACC
162110775 CTAAACC
1 CTAAACC
162110782 CTAAACC
1 CTAAACC
162110789 CTAAACC
1 CTAAACC
162110796 CTAAACC
1 CTAAACC
162110803 CTAAACC
1 CTAAACC
162110810 CTAAACC
1 CTAAACC
162110817 CTAAACC
1 CTAAACC
162110824 CTAAACC
1 CTAAACC
162110831 CTAAACC
1 CTAAACC
162110838 CTAAACC
1 CTAAACC
162110845 CTAAACC
1 CTAAACC
162110852 CTAAACC
1 CTAAACC
162110859 CTAAACC
1 CTAAACC
162110866 CTAAACC
1 CTAAACC
162110873 CTAAACC
1 CTAAACC
162110880 CT-AACC
1 CTAAACC
162110886 CTAAACC
1 CTAAACC
162110893 CTAAACC
1 CTAAACC
162110900 CTAAACC
1 CTAAACC
162110907 CTAAACC
1 CTAAACC
162110914 CTAAACC
1 CTAAACC
162110921 CTAAACC
1 CTAAACC
162110928 CTAAAACC
1 CT-AAACC
162110936 CTAAACC
1 CTAAACC
162110943 CTAAACC
1 CTAAACC
162110950 CT-AACC
1 CTAAACC
162110956 CTAAACC
1 CTAAACC
162110963 CTAAACC
1 CTAAACC
162110970 CTAAACC
1 CTAAACC
162110977 CTAAAACC
1 CT-AAACC
162110985 CTAAACC
1 CTAAACC
162110992 CTAAACC
1 CTAAACC
162110999 CTAAACC
1 CTAAACC
162111006 CTAAACC
1 CTAAACC
162111013 CTAAACC
1 CTAAACC
162111020 CTAAACC
1 CTAAACC
162111027 CT-AACC
1 CTAAACC
162111033 CTAAACC
1 CTAAACC
162111040 CT-AACC
1 CTAAACC
162111046 CTAAACC
1 CTAAACC
162111053 CTAAACC
1 CTAAACC
162111060 CTAAACC
1 CTAAACC
162111067 CTAAACC
1 CTAAACC
162111074 CTAAACC
1 CTAAACC
162111081 CTAAACC
1 CTAAACC
162111088 CTAAACC
1 CTAAACC
162111095 CTAAACC
1 CTAAACC
162111102 CTAAACC
1 CTAAACC
162111109 CTAAACC
1 CTAAACC
162111116 CTAAACC
1 CTAAACC
162111123 CTAAACC
1 CTAAACC
162111130 CTAAACC
1 CTAAACC
162111137 CTAAACC
1 CTAAACC
162111144 CTAAACC
1 CTAAACC
162111151 CT-AACC
1 CTAAACC
162111157 CTAAACC
1 CTAAACC
162111164 CTAAACC
1 CTAAACC
162111171 CTAAACC
1 CTAAACC
162111178 CTAAACC
1 CTAAACC
162111185 CTAAACC
1 CTAAACC
162111192 CTAAACC
1 CTAAACC
162111199 CTAAACC
1 CTAAACC
162111206 CTAAA-C
1 CTAAACC
162111212 CTAAACC
1 CTAAACC
162111219 CTAAACC
1 CTAAACC
162111226 CTAAAACC
1 CT-AAACC
162111234 CTAAACC
1 CTAAACC
162111241 CTAAACC
1 CTAAACC
162111248 CTAAACC
1 CTAAACC
162111255 CTAAACC
1 CTAAACC
162111262 CTAAACC
1 CTAAACC
162111269 CTAAACC
1 CTAAACC
162111276 CTAAACC
1 CTAAACC
162111283 CTAAACC
1 CTAAACC
162111290 CTAAACC
1 CTAAACC
162111297 CTAAAACC
1 CT-AAACC
162111305 CTAAACC
1 CTAAACC
162111312 CTAAACC
1 CTAAACC
162111319 CTAAACC
1 CTAAACC
162111326 CTAAA-C
1 CTAAACC
162111332 CTAAACC
1 CTAAACC
162111339 CTAAACC
1 CTAAACC
162111346 CTAAACC
1 CTAAACC
162111353 CTAAACC
1 CTAAACC
162111360 CTAAACC
1 CTAAACC
162111367 CTAAACC
1 CTAAACC
162111374 CTAAACC
1 CTAAACC
162111381 CTAAACC
1 CTAAACC
162111388 CTAAAACC
1 CT-AAACC
162111396 CTAAACC
1 CTAAACC
162111403 CTAAACC
1 CTAAACC
162111410 CTAAACC
1 CTAAACC
162111417 CTAAACC
1 CTAAACC
162111424 CTAAACC
1 CTAAACC
162111431 CTAAACC
1 CTAAACC
162111438 CTAAACC
1 CTAAACC
162111445 CTAAACC
1 CTAAACC
162111452 CTAAACC
1 CTAAACC
162111459 CTAAACC
1 CTAAACC
162111466 CTAAACC
1 CTAAACC
162111473 CTAAA-C
1 CTAAACC
162111479 CTAAACC
1 CTAAACC
162111486 CTAAACC
1 CTAAACC
162111493 CTAAAACC
1 CT-AAACC
162111501 CTAAACC
1 CTAAACC
162111508 CTAAAACC
1 CT-AAACC
162111516 CTAAACC
1 CTAAACC
*
162111523 CTAAAAC
1 CTAAACC
162111530 CTAAACC
1 CTAAACC
162111537 CTAAACC
1 CTAAACC
162111544 CTAAACC
1 CTAAACC
162111551 CTAAACC
1 CTAAACC
162111558 CTAAACC
1 CTAAACC
162111565 CTAAACC
1 CTAAACC
162111572 CTAAACC
1 CTAAACC
162111579 CTAAACC
1 CTAAACC
162111586 CTAAACC
1 CTAAACC
162111593 CTAAACC
1 CTAAACC
162111600 CTAAACC
1 CTAAACC
162111607 CTAAACC
1 CTAAACC
162111614 CTAAACC
1 CTAAACC
162111621 CTAAACC
1 CTAAACC
162111628 CTAAACC
1 CTAAACC
162111635 CTAAACC
1 CTAAACC
162111642 CTAAACC
1 CTAAACC
162111649 CTAAACC
1 CTAAACC
162111656 CTAAACC
1 CTAAACC
162111663 CTAAACC
1 CTAAACC
162111670 CTAAACC
1 CTAAACC
162111677 CTAAACC
1 CTAAACC
162111684 CTAAACC
1 CTAAACC
162111691 CTAAAACC
1 CT-AAACC
162111699 CTAAACC
1 CTAAACC
162111706 CTAAACC
1 CTAAACC
162111713 CTAAACC
1 CTAAACC
162111720 CTAAAACC
1 CT-AAACC
162111728 CTAAACC
1 CTAAACC
162111735 CTAAACC
1 CTAAACC
162111742 CTAAACC
1 CTAAACC
162111749 CTAAACC
1 CTAAACC
162111756 CTAAACC
1 CTAAACC
162111763 CTAAACC
1 CTAAACC
162111770 CTAAACC
1 CTAAACC
162111777 CTAAACC
1 CTAAACC
162111784 CTAAACC
1 CTAAACC
162111791 CTAAACC
1 CTAAACC
162111798 CTAAACC
1 CTAAACC
162111805 CTAAAACC
1 CT-AAACC
162111813 CTAAA-C
1 CTAAACC
162111819 CTAAACC
1 CTAAACC
162111826 CTAAACC
1 CTAAACC
162111833 CTAAACC
1 CTAAACC
162111840 CTAAACC
1 CTAAACC
162111847 CTAAACC
1 CTAAACC
162111854 CTAAACC
1 CTAAACC
162111861 CTAAACC
1 CTAAACC
162111868 CTAAACC
1 CTAAACC
162111875 CTAAACC
1 CTAAACC
162111882 CTAAACC
1 CTAAACC
162111889 CTAAACC
1 CTAAACC
162111896 CTAAAACC
1 CT-AAACC
162111904 CTAAACC
1 CTAAACC
162111911 CTAAACC
1 CTAAACC
162111918 CTAAACC
1 CTAAACC
162111925 CTAAACC
1 CTAAACC
162111932 CTAAACC
1 CTAAACC
162111939 CTAAACC
1 CTAAACC
162111946 CTAAACC
1 CTAAACC
162111953 CTAAACC
1 CTAAACC
162111960 CTAAACC
1 CTAAACC
162111967 CTAAACC
1 CTAAACC
162111974 CTAAACC
1 CTAAACC
162111981 CTAAAACC
1 CT-AAACC
162111989 CTAAACC
1 CTAAACC
162111996 CTAAACC
1 CTAAACC
162112003 CTAAACC
1 CTAAACC
162112010 CTAAACC
1 CTAAACC
162112017 CTAAACC
1 CTAAACC
162112024 CTAAACC
1 CTAAACC
162112031 CTAAACC
1 CTAAACC
162112038 CTAAA-C
1 CTAAACC
162112044 C--AACC
1 CTAAACC
162112049 CTAAACC
1 CTAAACC
162112056 CTAAACC
1 CTAAACC
162112063 CTAAACC
1 CTAAACC
162112070 CTAAACC
1 CTAAACC
162112077 CTAAACC
1 CTAAACC
162112084 CTAAACC
1 CTAAACC
162112091 CTAAACC
1 CTAAACC
162112098 CTAAACC
1 CTAAACC
162112105 CTAAAACC
1 CT-AAACC
162112113 CTAAACC
1 CTAAACC
162112120 CTAAACC
1 CTAAACC
162112127 CTAAACC
1 CTAAACC
162112134 CTAAACC
1 CTAAACC
162112141 CTAAACC
1 CTAAACC
162112148 CTAAACC
1 CTAAACC
162112155 CTAAACC
1 CTAAACC
162112162 CTAAACC
1 CTAAACC
162112169 CTAAACC
1 CTAAACC
162112176 CTAAACC
1 CTAAACC
162112183 CTAAACC
1 CTAAACC
162112190 CTAAACC
1 CTAAACC
162112197 CTAAACC
1 CTAAACC
162112204 CTAAACC
1 CTAAACC
162112211 CTAAACC
1 CTAAACC
162112218 CTAAACC
1 CTAAACC
162112225 CTAAACC
1 CTAAACC
162112232 CTAAACC
1 CTAAACC
162112239 CTAAACC
1 CTAAACC
162112246 CTAAACC
1 CTAAACC
162112253 CTAAACC
1 CTAAACC
162112260 CTAAACC
1 CTAAACC
162112267 CTAAACC
1 CTAAACC
162112274 CTAAACC
1 CTAAACC
162112281 CTAAACC
1 CTAAACC
162112288 CTAAACC
1 CTAAACC
162112295 CTAAACC
1 CTAAACC
162112302 CTAAACC
1 CTAAACC
162112309 CTAAACC
1 CTAAACC
162112316 CTAAACC
1 CTAAACC
162112323 CTAAACC
1 CTAAACC
162112330 CTAAACC
1 CTAAACC
162112337 CTAAACC
1 CTAAACC
162112344 CTAAACC
1 CTAAACC
162112351 CTAAACC
1 CTAAACC
162112358 CTAAACC
1 CTAAACC
162112365 CTAAACC
1 CTAAACC
162112372 CTAAAACC
1 CT-AAACC
162112380 CTAAACC
1 CTAAACC
162112387 CTAAACC
1 CTAAACC
162112394 CTAAACC
1 CTAAACC
162112401 CTAAACC
1 CTAAACC
162112408 CTAAACC
1 CTAAACC
162112415 CTAAACC
1 CTAAACC
162112422 CTAAACC
1 CTAAACC
162112429 CTAAACC
1 CTAAACC
162112436 CTAAAACC
1 CT-AAACC
162112444 CTAAACC
1 CTAAACC
162112451 CTAAACC
1 CTAAACC
162112458 CTAAACC
1 CTAAACC
162112465 CTAAACC
1 CTAAACC
162112472 CTAAACC
1 CTAAACC
162112479 CTAAACC
1 CTAAACC
162112486 CTAAACC
1 CTAAACC
162112493 CTAAA-C
1 CTAAACC
162112499 CTAAACC
1 CTAAACC
162112506 CTAAACC
1 CTAAACC
162112513 CTAAACC
1 CTAAACC
162112520 CTAAACC
1 CTAAACC
162112527 CTAAACC
1 CTAAACC
162112534 CTAAACC
1 CTAAACC
162112541 CTAAACC
1 CTAAACC
162112548 CTAAACC
1 CTAAACC
162112555 CTAAACC
1 CTAAACC
162112562 CTAAACC
1 CTAAACC
162112569 CTAACACC
1 CTAA-ACC
*
162112577 CTAAAAC
1 CTAAACC
162112584 C-AAACC
1 CTAAACC
162112590 CTAAACC
1 CTAAACC
162112597 CTAAACC
1 CTAAACC
162112604 CT-AACC
1 CTAAACC
162112610 CTAAACC
1 CTAAACC
162112617 CTAAA-C
1 CTAAACC
162112623 CTAAACC
1 CTAAACC
162112630 CTAAACC
1 CTAAACC
162112637 CTAAACC
1 CTAAACC
162112644 CT-AACC
1 CTAAACC
162112650 CTAAACC
1 CTAAACC
162112657 CTAAACC
1 CTAAACC
162112664 CTAAAACC
1 CT-AAACC
162112672 CTAAACC
1 CTAAACC
162112679 CTAAACC
1 CTAAACC
162112686 CTAAACC
1 CTAAACC
162112693 CTAAACC
1 CTAAACC
162112700 CTAAACC
1 CTAAACC
162112707 CTAAACC
1 CTAAACC
162112714 CTAAAACC
1 CT-AAACC
162112722 CTAAACC
1 CTAAACC
162112729 CTAAACC
1 CTAAACC
162112736 CTAAACC
1 CTAAACC
162112743 CTAAACC
1 CTAAACC
162112750 CTAAAACC
1 CT-AAACC
162112758 CTAAACC
1 CTAAACC
162112765 CTAAA-C
1 CTAAACC
162112771 CT-AACC
1 CTAAACC
162112777 CTAAAACC
1 CT-AAACC
162112785 CTAAAACC
1 CT-AAACC
162112793 CTAAACC
1 CTAAACC
162112800 CTAAACC
1 CTAAACC
162112807 CTAAACC
1 CTAAACC
162112814 CT-AACC
1 CTAAACC
162112820 CTAAACC
1 CTAAACC
162112827 CTAAACC
1 CTAAACC
162112834 CTAAACC
1 CTAAACC
162112841 CTAAACC
1 CTAAACC
162112848 CTAAACC
1 CTAAACC
162112855 CTAAAACC
1 CT-AAACC
*
162112863 CCAAACC
1 CTAAACC
162112870 CTAAACC
1 CTAAACC
162112877 CT-AACC
1 CTAAACC
*
162112883 CCAAACC
1 CTAAACC
*
162112890 CCAAACC
1 CTAAACC
162112897 CTAAACC
1 CTAAACC
162112904 CTAAACC
1 CTAAACC
162112911 CTAAAACC
1 CT-AAACC
*
162112919 C-CAA-C
1 CTAAACC
162112924 C-AAACC
1 CTAAACC
162112930 CTAAAACC
1 CT-AAACC
162112938 C-AAACC
1 CTAAACC
162112944 C--AACC
1 CTAAACC
162112949 CTAAA-C
1 CTAAACC
162112955 C-AAA-C
1 CTAAACC
162112960 C-AAACC
1 CTAAACC
*
162112966 CCAAACC
1 CTAAACC
*
162112973 CCAAACC
1 CTAAACC
162112980 CTAAAACC
1 CT-AAACC
*
162112988 CCAAACC
1 CTAAACC
*
162112995 CCAAACC
1 CTAAACC
162113002 CTAAACC
1 CTAAACC
162113009 C-AAACC
1 CTAAACC
162113015 CTAAACC
1 CTAAACC
*
162113022 CCAAACC
1 CTAAACC
*
162113029 CCAAACC
1 CTAAACC
162113036 CTAAACC
1 CTAAACC
*
162113043 CCAAACCC
1 CTAAA-CC
*
162113051 CAAAAAACC
1 C--TAAACC
*
162113060 CCAAACC
1 CTAAACC
*
162113067 CCAAACC
1 CTAAACC
*
162113074 C-CAACC
1 CTAAACC
*
162113080 CCAAACC
1 CTAAACC
*
162113087 C--CACC
1 CTAAACC
*
162113092 CCAAACC
1 CTAAACC
162113099 C-AAACC
1 CTAAACC
*
162113105 CCAAACC
1 CTAAACC
*
162113112 CCAAACC
1 CTAAACC
162113119 CTAAACC
1 CTAAACC
*
162113126 CCAAACCC
1 CTAAA-CC
*
162113134 CAAAACC
1 CTAAACC
*
162113141 CCAAACCC
1 CTAAA-CC
*
162113149 CAAAACC
1 CTAAACC
*
162113156 CCAAACC
1 CTAAACC
162113163 CTAAACCC
1 CTAAA-CC
162113171 CTAAACC
1 CTAAACC
*
162113178 CCAAACC
1 CTAAACC
162113185 CTAAA-C
1 CTAAACC
162113191 CT-AACC
1 CTAAACC
162113197 CTAAACC
1 CTAAACC
162113204 CTAAAACC
1 CT-AAACC
162113212 CTAAACC
1 CTAAACC
*
162113219 CAAAACC
1 CTAAACC
162113226 C-AAACC
1 CTAAACC
162113232 C-AAA-C
1 CTAAACC
162113237 C-AAACC
1 CTAAACC
162113243 C-AAACC
1 CTAAACC
162113249 CTAAAACC
1 CT-AAACC
162113257 C-AAACC
1 CTAAACC
*
162113263 CTAACCC
1 CTAAACC
162113270 CTAAACC
1 CTAAACC
162113277 CTAAACC
1 CTAAACC
162113284 CTAAACC
1 CTAAACC
*
162113291 CCAAACC
1 CTAAACC
*
162113298 CCAAACC
1 CTAAACC
*
162113305 CCAAACC
1 CTAAACC
*
162113312 CCAAACC
1 CTAAACC
*
162113319 CCAAACC
1 CTAAACC
*
162113326 CCAAACC
1 CTAAACC
*
162113333 CCAAACC
1 CTAAACC
*
162113340 CCAAACCC
1 CTAAA-CC
162113348 CTAAACC
1 CTAAACC
162113355 CTAAACC
1 CTAAACC
162113362 CTAAACC
1 CTAAACC
162113369 CTAAACC
1 CTAAACC
162113376 CTAAACC
1 CTAAACC
162113383 CTAAACC
1 CTAAACC
162113390 CTAAA--
1 CTAAACC
*
162113395 -AAAACC
1 CTAAACC
162113401 CT-AACC
1 CTAAACC
162113407 CTAAACC
1 CTAAACC
162113414 CTAAACC
1 CTAAACC
162113421 CTAAAACC
1 CT-AAACC
162113429 CTAAACC
1 CTAAACC
*
162113436 CCAAACCC
1 CTAAA-CC
162113444 CTAAACCC
1 CTAAA-CC
162113452 CTAAACC
1 CTAAACC
162113459 C-AAACC
1 CTAAACC
*
162113465 CCAAACC
1 CTAAACC
*
162113472 CCAAACC
1 CTAAACC
*
162113479 CCAAACC
1 CTAAACC
*
162113486 CCAAACC
1 CTAAACC
162113493 CTAAACC
1 CTAAACC
162113500 CTAAACC
1 CTAAACC
162113507 CTAAACC
1 CTAAACC
162113514 CTAAACC
1 CTAAACC
162113521 CTAAACC
1 CTAAACC
162113528 CTAAACC
1 CTAAACC
162113535 CTAAACC
1 CTAAACC
162113542 CTAAACCC
1 CTAAA-CC
162113550 CTACAACC
1 CTA-AACC
162113558 C-AAACC
1 CTAAACC
*
162113564 CCAAACC
1 CTAAACC
* *
162113571 CCAAAAC
1 CTAAACC
162113578 CTAAACC
1 CTAAACC
*
162113585 ATAAACC
1 CTAAACC
162113592 CT-AACC
1 CTAAACC
162113598 CTAAACC
1 CTAAACC
162113605 CTAAAAACCC
1 CT--AAA-CC
*
162113615 CAAAACC
1 CTAAACC
162113622 C-AAACC
1 CTAAACC
*
162113628 CCAAACC
1 CTAAACC
162113635 CTAAACC
1 CTAAACC
* *
162113642 ATAAAAC
1 CTAAACC
162113649 CTAAAACC
1 CT-AAACC
162113657 CTAAACC
1 CTAAACC
162113664 C-ACAACC
1 CTA-AACC
162113671 C-AAACC
1 CTAAACC
162113677 CGTAAACC
1 C-TAAACC
*
162113685 CTAGACC
1 CTAAACC
* *
162113692 CCAAACT
1 CTAAACC
162113699 CTAAACC
1 CTAAACC
162113706 C
1 C
162113707 AAAAAACCTA
Statistics
Matches: 3371, Mismatches: 58, Indels: 202
0.93 0.02 0.06
Matches are distributed among these distances:
4 5 0.00
5 32 0.01
6 227 0.07
7 2787 0.83
8 299 0.09
9 15 0.00
10 6 0.00
ACGTcount: A:0.44, C:0.44, G:0.00, T:0.12
Consensus pattern (7 bp):
CTAAACC
Found at i:162113735 original size:22 final size:22
Alignment explanation
Indices: 162113707--162113852 Score: 131
Period size: 22 Copynumber: 6.7 Consensus size: 22
162113697 CTCTAAACCC
* * *
162113707 AAAAAACCTAAGCGGGTTCCCA
1 AAAAAACCGAACCGGGTTCCCT
*
162113729 AAAAAACCGAACCGAGTTCCCT
1 AAAAAACCGAACCGGGTTCCCT
* *
162113751 TAAAAACCGAACCGGCTTCCCTT
1 AAAAAACCGAACCGGGTTCCC-T
* *
162113774 AAAAAACCGAACCGAGAT---T
1 AAAAAACCGAACCGGGTTCCCT
* *
162113793 -AAAAACCGAACTGGGATCCCTT
1 AAAAAACCGAACCGGGTTCCC-T
*
162113815 AAAAAGCCGAACCGGGTTGCCC-
1 AAAAAACCGAACCGGGTT-CCCT
162113837 AAAAAACCGAACCGGG
1 AAAAAACCGAACCGGG
162113853 ATCAATAAAC
Statistics
Matches: 100, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
18 15 0.15
19 1 0.01
22 52 0.52
23 29 0.29
24 3 0.03
ACGTcount: A:0.40, C:0.29, G:0.18, T:0.13
Consensus pattern (22 bp):
AAAAAACCGAACCGGGTTCCCT
Found at i:162113813 original size:41 final size:41
Alignment explanation
Indices: 162113750--162113828 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
162113740 CCGAGTTCCC
*
162113750 TTAAAAACCGAACCGGCTTCCCTTAAAAAACCGAACCGAGA
1 TTAAAAACCGAACCGGCATCCCTTAAAAAACCGAACCGAGA
* * *
162113791 TTAAAAACCGAACTGGGATCCCTTAAAAAGCCGAACCG
1 TTAAAAACCGAACCGGCATCCCTTAAAAAACCGAACCG
162113829 GGTTGCCCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.41, C:0.28, G:0.16, T:0.15
Consensus pattern (41 bp):
TTAAAAACCGAACCGGCATCCCTTAAAAAACCGAACCGAGA
Found at i:162113813 original size:63 final size:63
Alignment explanation
Indices: 162113730--162113869 Score: 176
Period size: 63 Copynumber: 2.2 Consensus size: 63
162113720 GGGTTCCCAA
* *
162113730 AAAAACCGAACCGAGTTCCCTTAAAAA-CCGAACCGGCTT-CCCTTAAAAAACCGAACCGAGATT
1 AAAAACCGAACCGAGATCCCTTAAAAAGCCGAACCGGCTTGCCC--AAAAAACCGAACCGAGATC
* * * *
162113793 AAAAACCGAACTGGGATCCCTTAAAAAGCCGAACCGGGTTGCCCAAAAAACCGAACCGGGATC
1 AAAAACCGAACCGAGATCCCTTAAAAAGCCGAACCGGCTTGCCCAAAAAACCGAACCGAGATC
162113856 AATAAACCCGAACC
1 AA-AAA-CCGAACC
162113870 TGGATCAATA
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
63 43 0.65
64 14 0.21
65 9 0.14
ACGTcount: A:0.40, C:0.30, G:0.17, T:0.13
Consensus pattern (63 bp):
AAAAACCGAACCGAGATCCCTTAAAAAGCCGAACCGGCTTGCCCAAAAAACCGAACCGAGATC
Found at i:162113890 original size:20 final size:20
Alignment explanation
Indices: 162113843--162113892 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
162113833 GCCCAAAAAA
*
162113843 CCGAACCGGGATCAATAAAC
1 CCGAACCTGGATCAATAAAC
162113863 CCGAACCTGGATCAATAAAC
1 CCGAACCTGGATCAATAAAC
162113883 CCGAACCTGG
1 CCGAACCTGG
162113893 TTCCCAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.36, C:0.32, G:0.20, T:0.12
Consensus pattern (20 bp):
CCGAACCTGGATCAATAAAC
Found at i:162116412 original size:324 final size:324
Alignment explanation
Indices: 162115817--162116461 Score: 1245
Period size: 324 Copynumber: 2.0 Consensus size: 324
162115807 GAACAGGAGA
162115817 GAAGGAAAATATTTGAAAACAAGGGAAAAAACAGTAGTTGATAAAGGAGAAAGGAACGTTAGAAA
1 GAAGGAAAATATTTGAAAACAAGGGAAAAAACAGTAGTTGATAAAGGAGAAAGGAACGTTAGAAA
162115882 TAAGGGAAAAACAGGAGAGAATAAAGGAATAAGGAACGTGATCCATACTTTCAAATACTGAAAGA
66 TAAGGGAAAAACAGGAGAGAATAAAGGAATAAGGAACGTGATCCATACTTTCAAATACTGAAAGA
*
162115947 AATAGACTTTCTCTAAAGCTGAAAATCAAAATCTCTGACAAAAGTACACAGTAAACAAACAAAAA
131 AATAGACTTTCTCTAAAGCTGAAAATCAAAATCTCTGACAAAAGAACACAGTAAACAAACAAAAA
162116012 GAATAAACAGAACGAGATCAATAGATTTGTAACACGGAACAAAACAGTGATGTCTAACCGCTAAC
196 GAATAAACAGAACGAGATCAATAGATTTGTAACACGGAACAAAACAGTGATGTCTAACCGCTAAC
*
162116077 ATCTATCGTTTCTAATAAGGAATGAAACAGTGATTCTCTAAAGGTGAAAACCAAAAACCGTGAC
261 ATCTATCGTTTCTAATAAGGAACGAAACAGTGATTCTCTAAAGGTGAAAACCAAAAACCGTGAC
162116141 GAAGGAAAATATTTGAAAACAAGGGAAAAAACAGTAGTTGATAAAGGAGAAAGGAACGTTAGAAA
1 GAAGGAAAATATTTGAAAACAAGGGAAAAAACAGTAGTTGATAAAGGAGAAAGGAACGTTAGAAA
*
162116206 TAAGGGAAAAACAGGAGAGAATAAAGGAATAAGGAACGTGATCCATAGTTTCAAATACTGAAAGA
66 TAAGGGAAAAACAGGAGAGAATAAAGGAATAAGGAACGTGATCCATACTTTCAAATACTGAAAGA
162116271 AATAGACTTTCTCTAAAGCTGAAAATCAAAATCTCTGACAAAAGAACACAGTAAACAAACAAAAA
131 AATAGACTTTCTCTAAAGCTGAAAATCAAAATCTCTGACAAAAGAACACAGTAAACAAACAAAAA
*
162116336 GAATAAACAGAATGAGATCAATAGATTTGTAACACGGAACAAAACAGTGATGTCTAACCGCTAAC
196 GAATAAACAGAACGAGATCAATAGATTTGTAACACGGAACAAAACAGTGATGTCTAACCGCTAAC
*
162116401 ATCTTTCGTTTCTAATAAGGAACGAAACAGTGATTCTCTAAAGGTGAAAACCAAAAACCGT
261 ATCTATCGTTTCTAATAAGGAACGAAACAGTGATTCTCTAAAGGTGAAAACCAAAAACCGT
162116462 TACAAAGACA
Statistics
Matches: 316, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
324 316 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (324 bp):
GAAGGAAAATATTTGAAAACAAGGGAAAAAACAGTAGTTGATAAAGGAGAAAGGAACGTTAGAAA
TAAGGGAAAAACAGGAGAGAATAAAGGAATAAGGAACGTGATCCATACTTTCAAATACTGAAAGA
AATAGACTTTCTCTAAAGCTGAAAATCAAAATCTCTGACAAAAGAACACAGTAAACAAACAAAAA
GAATAAACAGAACGAGATCAATAGATTTGTAACACGGAACAAAACAGTGATGTCTAACCGCTAAC
ATCTATCGTTTCTAATAAGGAACGAAACAGTGATTCTCTAAAGGTGAAAACCAAAAACCGTGAC
Found at i:162123486 original size:30 final size:31
Alignment explanation
Indices: 162123450--162123514 Score: 123
Period size: 30 Copynumber: 2.1 Consensus size: 31
162123440 AAGAAAGAAA
162123450 GAAACTTGTATAGGTGCTCTCCT-TACTGAT
1 GAAACTTGTATAGGTGCTCTCCTCTACTGAT
162123480 GAAACTTGTATAGGTGCTCTCCTCTACTGAT
1 GAAACTTGTATAGGTGCTCTCCTCTACTGAT
162123511 GAAA
1 GAAA
162123515 GTTGGAAAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 23 0.68
31 11 0.32
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (31 bp):
GAAACTTGTATAGGTGCTCTCCTCTACTGAT
Found at i:162138201 original size:31 final size:32
Alignment explanation
Indices: 162138135--162138205 Score: 83
Period size: 31 Copynumber: 2.2 Consensus size: 32
162138125 AGTGGGGAAT
* * *
162138135 CGGGATATTCCTAATATGGGATAAACCCAAGC
1 CGGGATATACCTAACATGGGATAAAACCAAGC
*
162138167 CGGGATATACC-AACATGGGATAACAACGAA-C
1 CGGGATATACCTAACATGGGATAA-AACCAAGC
162138198 CGGGATAT
1 CGGGATAT
162138206 CCCTGGAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
31 20 0.59
32 14 0.41
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (32 bp):
CGGGATATACCTAACATGGGATAAAACCAAGC
Found at i:162144911 original size:39 final size:39
Alignment explanation
Indices: 162144847--162144929 Score: 121
Period size: 39 Copynumber: 2.1 Consensus size: 39
162144837 GGTGGTGACG
*
162144847 GGTGGACCGATGGTGACTACCTGACTGGTGAACAATGAT
1 GGTGGACCGATGGTGACTACCTGACTGGTGAACAACGAT
* * * *
162144886 GGTGTACCGGTGGTGACTGCCTGACTGGTGAACGACGAT
1 GGTGGACCGATGGTGACTACCTGACTGGTGAACAACGAT
162144925 GGTGG
1 GGTGG
162144930 TGGCCGGTGG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.20, C:0.18, G:0.39, T:0.23
Consensus pattern (39 bp):
GGTGGACCGATGGTGACTACCTGACTGGTGAACAACGAT
Found at i:162148476 original size:16 final size:16
Alignment explanation
Indices: 162148425--162148478 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
162148415 ATCCGCAGGT
*
162148425 GGGATATACCTCAGCC
1 GGGATATACCTAAGCC
* **
162148441 GGGCTAT-CCTAAGTA
1 GGGATATACCTAAGCC
*
162148456 AGGATATACCTAAGCC
1 GGGATATACCTAAGCC
162148472 GGGATAT
1 GGGATAT
162148479 CCTCGGAATT
Statistics
Matches: 28, Mismatches: 9, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
15 10 0.36
16 18 0.64
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (16 bp):
GGGATATACCTAAGCC
Found at i:162148672 original size:42 final size:43
Alignment explanation
Indices: 162148578--162148692 Score: 135
Period size: 42 Copynumber: 2.7 Consensus size: 43
162148568 CGAACCGGGA
* * * *
162148578 TGGGATATCAGAGGGATATCCCCGGAATTGATTATTCTAAGAG
1 TGGGATATGAGAGGGATATCCCTGGAATAGATTATTCCAAGAG
*
162148621 -GGGAAATGAGAGGGATATCCCTGGAATAGATTATTCCAAG-G
1 TGGGATATGAGAGGGATATCCCTGGAATAGATTATTCCAAGAG
* * * *
162148662 TGGGATATGAGCGGTATTTACCTGGAATAGA
1 TGGGATATGAGAGGGATATCCCTGGAATAGA
162148693 AAAGAGAACG
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
41 1 0.02
42 60 0.98
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.26
Consensus pattern (43 bp):
TGGGATATGAGAGGGATATCCCTGGAATAGATTATTCCAAGAG
Found at i:162149016 original size:99 final size:98
Alignment explanation
Indices: 162148815--162149003 Score: 251
Period size: 99 Copynumber: 1.9 Consensus size: 98
162148805 GATTTGCAAG
*
162148815 AAAATGTCGTTAAATACAAAGGGAAACTAACAATCAAAAAATAAAATAAAATAAAACACATAACA
1 AAAATGTCGTTAAATACAAAGGGAAACAAACAATC-AAAAATAAAATAAAATAAAACACATAACA
* ** * *
162148880 GGCAAATAAAATCTAATTAATGGGATTCAATTAT
65 GGCAAATAAAATCAAAAAAATGGAAATCAATTAT
* *
162148914 AAAATGTCGTTAAATACAAAGGGAAACAAACAATC-AGAA-AAAATAAAATAAAACACATTACAG
1 AAAATGTCGTTAAATACAAAGGGAAACAAACAATCAAAAATAAAATAAAATAAAACACATAACAG
162148977 GC-AATAAACTATCAAAAAAAT-GAAATC
66 GCAAATAAA--ATCAAAAAAATGGAAATC
162149004 GAAAGATTTA
Statistics
Matches: 80, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
95 6 0.08
96 29 0.36
97 11 0.14
99 34 0.43
ACGTcount: A:0.58, C:0.12, G:0.10, T:0.20
Consensus pattern (98 bp):
AAAATGTCGTTAAATACAAAGGGAAACAAACAATCAAAAATAAAATAAAATAAAACACATAACAG
GCAAATAAAATCAAAAAAATGGAAATCAATTAT
Found at i:162153680 original size:31 final size:31
Alignment explanation
Indices: 162153642--162153704 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
162153632 AGTACGAGAA
162153642 GGGAGGAAGAGAGAATAATGAAAACAAAAAG
1 GGGAGGAAGAGAGAATAATGAAAACAAAAAG
162153673 GGGAGGAAGAGAGAATAATGAAAACAAAAAG
1 GGGAGGAAGAGAGAATAATGAAAACAAAAAG
162153704 G
1 G
162153705 AAATAAGGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.57, C:0.03, G:0.33, T:0.06
Consensus pattern (31 bp):
GGGAGGAAGAGAGAATAATGAAAACAAAAAG
Found at i:162155806 original size:40 final size:40
Alignment explanation
Indices: 162155729--162155945 Score: 334
Period size: 40 Copynumber: 5.5 Consensus size: 40
162155719 AAACCAAGTA
* *
162155729 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
162155768 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
162155808 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
162155848 CCTTCGGGAC-TAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
162155887 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
162155927 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
162155946 TTATCATCCG
Statistics
Matches: 167, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 54 0.32
40 113 0.68
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:162155872 original size:79 final size:79
Alignment explanation
Indices: 162155729--162155945 Score: 332
Period size: 79 Copynumber: 2.7 Consensus size: 79
162155719 AAACCAAGTA
* * *
162155729 CCTTCGGGATTTAG-CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
162155793 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
162155808 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC-TAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
162155872 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
162155887 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
162155946 TTATCATCCG
Statistics
Matches: 127, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
78 1 0.01
79 86 0.68
80 40 0.31
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTCGCACAAATG
Found at i:162155942 original size:119 final size:119
Alignment explanation
Indices: 162155729--162155945 Score: 332
Period size: 119 Copynumber: 1.8 Consensus size: 119
162155719 AAACCAAGTA
* * *
162155729 CCTTCGGGATTTAGCCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGT
1 CCTTCGGGATCTAGCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
162155794 AACTCGCACAAATGCCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
66 AACTAGCACAAATGCCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
162155848 CCTTCGGGA-CTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATT
1 CCTTCGGGATCTAG-CCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-T
* *
162155910 AGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
63 AGTAACTAGCACAAATGCCTTCGGGACCTAGCCCGG
162155946 TTATCATCCG
Statistics
Matches: 89, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
118 5 0.06
119 84 0.94
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (119 bp):
CCTTCGGGATCTAGCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTAGCACAAATGCCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:162164301 original size:40 final size:40
Alignment explanation
Indices: 162164196--162164357 Score: 231
Period size: 40 Copynumber: 4.1 Consensus size: 40
162164186 CGGATGATAA
* *
162164196 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
162164236 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
162164275 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
162164315 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
162164355 CCG
1 CCG
162164358 ACTAAATTTC
Statistics
Matches: 111, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
39 36 0.32
40 75 0.68
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:162164372 original size:79 final size:79
Alignment explanation
Indices: 162164196--162164364 Score: 200
Period size: 79 Copynumber: 2.1 Consensus size: 79
162164186 CGGATGATAA
* * * * *
162164196 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGT
1 CCGGACTAAATCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGA
*
162164261 GCGAGTTACTATAT
66 GCAAGTTACTATAT
** * *
162164275 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGACTAAATCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGCATTT
162164339 GAGCAAG-TAGCTATAT
64 GAGCAAGTTA-CTATAT
162164355 CC-GACTAAAT
1 CCGGACTAAAT
162164365 TTCGAAGGTA
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
78 2 0.03
79 50 0.64
80 26 0.33
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGACTAAATCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGA
GCAAGTTACTATAT
Found at i:162167193 original size:40 final size:40
Alignment explanation
Indices: 162167116--162167331 Score: 316
Period size: 39 Copynumber: 5.5 Consensus size: 40
162167106 AAACCAAGTA
* *
162167116 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
162167155 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
162167195 CCTTC-GGACCTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
162167234 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
162167274 CCTTC-GGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
162167313 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
162167332 TTATCATCCG
Statistics
Matches: 162, Mismatches: 10, Indels: 9
0.90 0.06 0.05
Matches are distributed among these distances:
38 1 0.01
39 85 0.52
40 76 0.47
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:162167247 original size:79 final size:78
Alignment explanation
Indices: 162167130--162167335 Score: 317
Period size: 79 Copynumber: 2.6 Consensus size: 78
162167120 CGGGATTTAG
* *
162167130 CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCGGATATAG-TACTCACACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
162167195 CCTTCGGACCTAGC
65 CCTTCGGACCTAGC
*
162167209 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCGGATATAGT-ACTCACACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
162167274 CCTTCGGACTTAGC
65 CCTTCGGACCTAGC
162167288 CCGGA-ATTAGTCACT-AGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCGGATA-TAGT-ACTCA-CACAAATGCCTTCGGGACTTAGCCCGGTTAT
162167336 CATCCGGATA
Statistics
Matches: 118, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
78 3 0.03
79 115 0.97
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (78 bp):
CCGGATATAGTACTCACACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGC
CTTCGGACCTAGC
Found at i:162174929 original size:39 final size:39
Alignment explanation
Indices: 162174850--162174945 Score: 167
Period size: 39 Copynumber: 2.5 Consensus size: 39
162174840 ACTAAGATCC
*
162174850 AAGGCGTTCGTGCGAGTTAATAAAT-CGGGTTAAGCCCG
1 AAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCG
*
162174888 AAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGCCCG
1 AAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCG
162174927 AAGGCATTCGTGCGAGTTA
1 AAGGCATTCGTGCGAGTTA
162174946 CTATAACCGG
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
38 23 0.43
39 31 0.57
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (39 bp):
AAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCG
Found at i:162174956 original size:39 final size:38
Alignment explanation
Indices: 162174850--162174974 Score: 162
Period size: 39 Copynumber: 3.2 Consensus size: 38
162174840 ACTAAGATCC
* *
162174850 AAGGCGTTCGTGCGAGTTAATAAATCGGGTTAAGCCCG
1 AAGGCATTCGTGCGAGTTAATAAACCGGGTTAAGCCCG
*
162174888 AAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGCCCG
1 AAGGCATTCGTGCGAGTTAATAAA-CCGGGTTAAGCCCG
* *
162174927 AAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTCCCG
1 AAGGCATTCGTGCGAGTTAATA-AACC-GGGTTAAG-CCCG
162174967 AAGGCATT
1 AAGGCATT
162174975 TGAGCTAGTC
Statistics
Matches: 77, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
38 22 0.29
39 36 0.47
40 19 0.25
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (38 bp):
AAGGCATTCGTGCGAGTTAATAAACCGGGTTAAGCCCG
Found at i:162174994 original size:79 final size:76
Alignment explanation
Indices: 162174850--162174999 Score: 167
Period size: 79 Copynumber: 1.9 Consensus size: 76
162174840 ACTAAGATCC
* * * *
162174850 AAGGCGTTCGTGCGAGTTAATAAATCGGGTTAAGCCCGAAGGCATTTGTGCGAGTTAATAAATCC
1 AAGGCATTCGTGCGAGTTAATAAACCGGGTTAAGCCCGAAGGCATTTGAGCGAGTCAATAAATCC
162174915 GGGTTAAGCCCG
66 -GGTTAAGCCCG
* * * ** *
162174927 AAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTCCCGAAGGCATTTGAGCTAGTCGTTATA
1 AAGGCATTCGTGCGAGTTAATA-AACC-GGGTTAAG-CCCGAAGGCATTTGAGCGAGTCAATAAA
162174991 TCCGGTTAA
63 TCCGGTTAA
162175000 ATTCCGAAGG
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
77 20 0.33
78 10 0.17
79 30 0.50
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (76 bp):
AAGGCATTCGTGCGAGTTAATAAACCGGGTTAAGCCCGAAGGCATTTGAGCGAGTCAATAAATCC
GGTTAAGCCCG
Found at i:162182944 original size:39 final size:39
Alignment explanation
Indices: 162182834--162182933 Score: 173
Period size: 39 Copynumber: 2.6 Consensus size: 39
162182824 GGACTAAGAT
*
162182834 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
* *
162182873 CCGAAGGCATTTGTACGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
162182912 CCGAAGGCATTCGTGCGAGTTA
1 CCGAAGGCATTCGTGCGAGTTA
162182934 CTATAACCGG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
Found at i:162191241 original size:14 final size:14
Alignment explanation
Indices: 162191222--162191251 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
162191212 TACTGAAGAG
162191222 ATGTGAAGAGGCGA
1 ATGTGAAGAGGCGA
162191236 ATGTGAAGAGGCGA
1 ATGTGAAGAGGCGA
162191250 AT
1 AT
162191252 CTTGTCCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.07, G:0.40, T:0.17
Consensus pattern (14 bp):
ATGTGAAGAGGCGA
Found at i:162199591 original size:48 final size:47
Alignment explanation
Indices: 162199425--162199781 Score: 247
Period size: 47 Copynumber: 7.6 Consensus size: 47
162199415 TATAATGTCA
* * *
162199425 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATTAAGT--CG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTCA-CTA-TACGTGCCG
* *
162199472 ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATCCGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-A-ACTCAC-TATACGTGCCG
* *
162199522 ATGCCATGTCCCATACGTGGTCTTACACTAACAT-AGCTATACGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAAC-TCA-CTATACGTGCCG
* * * * *
162199570 ATGCCATGTCCCAAACATGGTCTTACACTGACACA-TCT-CGTAACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTCACTATACGT-GCCG
** * * * *
162199616 ATG-CATGTCCCAGACAT-GTCTTACACTTGCTTAC-ATCTCGAGACG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTCACTAT-ACGTGCCG
* * * *
162199661 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCCCGTCT-CAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTCAC-TATAC-GTGCCG
* ** * * * *
162199707 ATGCCATGT-CCAGACATGGTTTTACACTGGCTCTCAAAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTCACTATACGT-GCCG
162199754 ATG-CATGTCCCAGACAT-GTCTTACACTA
1 ATGCCATGTCCCAGACATGGTCTTACACTA
162199782 GCACACAATT
Statistics
Matches: 250, Mismatches: 40, Indels: 41
0.76 0.12 0.12
Matches are distributed among these distances:
44 13 0.05
45 50 0.20
46 39 0.16
47 64 0.26
48 47 0.19
49 8 0.03
50 29 0.12
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAACTCACTATACGTGCCG
Found at i:162199633 original size:45 final size:46
Alignment explanation
Indices: 162199425--162199735 Score: 209
Period size: 45 Copynumber: 6.7 Consensus size: 46
162199415 TATAATGTCA
* * *
162199425 ATGCCATGTCCCAGACATGGTCTTACACT-AGCTCATC-CATTAAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGA-CACATCTC-GTAA-CCG
* *
162199472 ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATCCGT-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGA----CACATCT-CGTAACCG
* * * * * *
162199522 ATGCCATGTCCCATACGTGGTCTTACACTAACATAGCTATACGT-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACACA--TCT-CGTAACCG
*
162199570 ATGCCATGTCCCAAACATGGTCTTACACTGACACATCTCGTAACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAACCG
162199616 ATG-CATGTCCCAGACAT-GTCTTACACTTG-CTTACATCTCG-AGA-CG
1 ATGCCATGTCCCAGACATGGTCTTACAC-TGAC--ACATCTCGTA-ACCG
* * *
162199661 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCCCGTCTC--AATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTAA--CCG
*
162199707 ATGCCATGT-CCAGACATGGTTTTACACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTG
162199736 GCTCTCAAAA
Statistics
Matches: 222, Mismatches: 21, Indels: 43
0.78 0.07 0.15
Matches are distributed among these distances:
43 1 0.00
44 12 0.05
45 53 0.24
46 34 0.15
47 44 0.20
48 42 0.19
50 30 0.14
51 4 0.02
52 1 0.00
53 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAACCG
Found at i:162200999 original size:35 final size:35
Alignment explanation
Indices: 162200931--162201099 Score: 178
Period size: 35 Copynumber: 4.6 Consensus size: 35
162200921 TCCTCATTGA
*** *
162200931 AATACCATACCTACATTTTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACA--TTTCACAACTCAGTAT-GGAT
* **
162200968 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
162201008 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
162201043 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
162201078 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
162201100 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
35 74 0.63
37 14 0.12
39 3 0.03
40 27 0.23
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.33
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:162208502 original size:75 final size:73
Alignment explanation
Indices: 162208414--162208585 Score: 217
Period size: 75 Copynumber: 2.4 Consensus size: 73
162208404 GGTTTTCCTC
*** * * **
162208414 ATTGAAATACCATACCTACATTTTTTAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
162208478 TCAGTATGG
65 TCAGTATGG
*
162208487 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
162208552 CTCAGTATGG
64 CTCAGTATGG
162208562 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
162208586 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 57 0.65
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:162208583 original size:35 final size:35
Alignment explanation
Indices: 162208419--162208585 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
162208409 TCCTCATTGA
*** *
162208419 AATACCATACCTACATTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
162208454 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
162208494 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
162208529 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
162208564 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
162208586 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
35 88 0.75
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:162212575 original size:16 final size:16
Alignment explanation
Indices: 162212554--162212587 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
162212544 TAAATCGTAT
162212554 AATACTAGAATATAAA
1 AATACTAGAATATAAA
* *
162212570 AATACTAGTATTTAAA
1 AATACTAGAATATAAA
162212586 AA
1 AA
162212588 AATTGGGTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (16 bp):
AATACTAGAATATAAA
Found at i:162213129 original size:29 final size:27
Alignment explanation
Indices: 162213074--162213135 Score: 70
Period size: 29 Copynumber: 2.2 Consensus size: 27
162213064 TTATATTTGA
162213074 ATTTCAAATTTAATTTACATTTCAATTC
1 ATTT-AAATTTAATTTACATTTCAATTC
* * *
162213102 ATTTAAATTTATATTTTCCATTTTAATTT
1 ATTTAAATTTA-A-TTTACATTTCAATTC
162213131 ATTTA
1 ATTTA
162213136 TTTATCATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 7 0.24
28 5 0.17
29 17 0.59
ACGTcount: A:0.34, C:0.10, G:0.00, T:0.56
Consensus pattern (27 bp):
ATTTAAATTTAATTTACATTTCAATTC
Found at i:162213157 original size:20 final size:21
Alignment explanation
Indices: 162213100--162213158 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
162213090 ACATTTCAAT
*
162213100 TCATTTAAATTTA--TATTT-
1 TCATTTCAATTTATTTATTTA
*
162213118 TCCATTTTAATTTATTTATTTA
1 T-CATTTCAATTTATTTATTTA
162213140 TCATTTCAATTT-TTTATTT
1 TCATTTCAATTTATTTATTT
162213159 CATTTTTTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
18 1 0.03
19 11 0.31
20 7 0.20
21 15 0.43
22 1 0.03
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.64
Consensus pattern (21 bp):
TCATTTCAATTTATTTATTTA
Found at i:162213167 original size:21 final size:21
Alignment explanation
Indices: 162213122--162213172 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
162213112 ATATTTTCCA
162213122 TTTT-AATTTATTTATTTATC
1 TTTTCAATTTATTTATTTATC
* *
162213142 ATTTCAATTT-TTTATTTCATT
1 TTTTCAATTTATTTATTT-ATC
162213163 TTTTC-ATTTA
1 TTTTCAATTTA
162213173 AATTTATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.69
Consensus pattern (21 bp):
TTTTCAATTTATTTATTTATC
Found at i:162213184 original size:33 final size:35
Alignment explanation
Indices: 162213099--162213184 Score: 83
Period size: 33 Copynumber: 2.6 Consensus size: 35
162213089 TACATTTCAA
162213099 TTCATTTAAATTTAT-ATTTTCCATTTTAATTTAT
1 TTCATTTAAATTTATAATTTTCCATTTTAATTTAT
* * ** *
162213133 TT-ATTTATCATTT-CAATTTTTTA-TTTCATTT-T
1 TTCATTTA-AATTTATAATTTTCCATTTTAATTTAT
162213165 TTCATTTAAATTTATAATTT
1 TTCATTTAAATTTATAATTT
162213185 ATTTTCATTT
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
32 7 0.17
33 22 0.54
34 12 0.29
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (35 bp):
TTCATTTAAATTTATAATTTTCCATTTTAATTTAT
Found at i:162213286 original size:5 final size:5
Alignment explanation
Indices: 162213221--162213277 Score: 51
Period size: 5 Copynumber: 10.6 Consensus size: 5
162213211 TCATAATCAC
* * *
162213221 CATTT CATTT CATTT CGTTT CATATT CATTAT AAATTA CATTT CATTT
1 CATTT CATTT CATTT CATTT CAT-TT CATT-T -CATTT CATTT CATTT
162213269 CATATT CAT
1 CAT-TT CAT
162213278 ATTTCATTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
5 28 0.67
6 11 0.26
7 3 0.07
ACGTcount: A:0.28, C:0.18, G:0.02, T:0.53
Consensus pattern (5 bp):
CATTT
Found at i:162213463 original size:10 final size:10
Alignment explanation
Indices: 162213445--162213478 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
162213435 ATCAGGGTTA
162213445 TTTAAATTTT
1 TTTAAATTTT
*
162213455 TTTATATTTT
1 TTTAAATTTT
162213465 ATTTAAATTTT
1 -TTTAAATTTT
162213476 TTT
1 TTT
162213479 GTCAATTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (10 bp):
TTTAAATTTT
Found at i:162213474 original size:11 final size:11
Alignment explanation
Indices: 162213442--162213475 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
162213432 AGTATCAGGG
162213442 TTATTTAAATT
1 TTATTTAAATT
*
162213453 TT-TTTATATT
1 TTATTTAAATT
162213463 TTATTTAAATT
1 TTATTTAAATT
162213474 TT
1 TT
162213476 TTTGTCAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTATTTAAATT
Found at i:162213706 original size:5 final size:5
Alignment explanation
Indices: 162213698--162213788 Score: 101
Period size: 5 Copynumber: 16.6 Consensus size: 5
162213688 CCTTTTTTTT
*
162213698 TTTCA TTTCA TTTCAA TTTCA ATTCTA TTTCA TTTCA TTTCAA TTTTCA
1 TTTCA TTTCA TTTC-A TTTCA TTTC-A TTTCA TTTCA TTTC-A -TTTCA
162213747 TTTCA TTTCAA TTTTCA TTTCA TTTTCA TTTCCA TTTCA TTT
1 TTTCA TTTC-A -TTTCA TTTCA -TTTCA TTT-CA TTTCA TTT
162213789 AAATTATATT
Statistics
Matches: 76, Mismatches: 2, Indels: 16
0.81 0.02 0.17
Matches are distributed among these distances:
5 45 0.59
6 23 0.30
7 8 0.11
ACGTcount: A:0.22, C:0.19, G:0.00, T:0.59
Consensus pattern (5 bp):
TTTCA
Found at i:162213718 original size:11 final size:11
Alignment explanation
Indices: 162213698--162213793 Score: 99
Period size: 11 Copynumber: 8.7 Consensus size: 11
162213688 CCTTTTTTTT
162213698 TTTC-ATTTCA
1 TTTCAATTTCA
162213708 TTTCAATTTCA
1 TTTCAATTTCA
* *
162213719 ATTCTATTTCA
1 TTTCAATTTCA
162213730 TTTC-ATTTCAA
1 TTTCAATTTC-A
162213741 TTTTC-ATTTCA
1 -TTTCAATTTCA
162213752 TTTCAATTTTCA
1 TTTCAA-TTTCA
*
162213764 TTTCATTTTCA
1 TTTCAATTTCA
*
162213775 TTTCCATTTCA
1 TTTCAATTTCA
*
162213786 TTTAAATT
1 TTTCAATT
162213794 ATATTTTTTC
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
10 13 0.18
11 41 0.56
12 19 0.26
ACGTcount: A:0.24, C:0.18, G:0.00, T:0.58
Consensus pattern (11 bp):
TTTCAATTTCA
Found at i:162213729 original size:17 final size:17
Alignment explanation
Indices: 162213698--162213799 Score: 57
Period size: 17 Copynumber: 5.8 Consensus size: 17
162213688 CCTTTTTTTT
*
162213698 TTTCATTTC-ATTTCAA
1 TTTCAATTCTATTTCAA
162213714 TTTCAATTCTATTTCATTTCA
1 TTTCAATTCTATTTCA----A
*
162213735 TTTCAATTTTCATTTC-A
1 TTTCAATTCT-ATTTCAA
* *
162213752 TTTCAATTTTCATTTCAT
1 TTTCAATTCT-ATTTCAA
* *
162213770 TTTCATTTCCATTTC-A
1 TTTCAATTCTATTTCAA
* *
162213786 TTTAAATTATATTT
1 TTTCAATTCTATTT
162213800 TTTCCATTTA
Statistics
Matches: 68, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
16 18 0.26
17 28 0.41
18 7 0.10
21 10 0.15
22 5 0.07
ACGTcount: A:0.25, C:0.17, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTCAATTCTATTTCAA
Found at i:162213799 original size:22 final size:21
Alignment explanation
Indices: 162213784--162213932 Score: 92
Period size: 22 Copynumber: 6.8 Consensus size: 21
162213774 ATTTCCATTT
* *
162213784 CATTTAAATTATA-TTTTTTC
1 CATTTAATTTAAATTTTTTTC
162213804 CATTTAATTT-AATTTTTTTCC
1 CATTTAATTTAAATTTTTTT-C
* *
162213825 TCATTTCATTTAATTTATCTATCTTCC
1 -CATTTAATTTAAATT-T-T-T-TT-C
162213852 CATTTTAATTT--ATTTTTTTC
1 CA-TTTAATTTAAATTTTTTTC
* *
162213872 TCATTTTATTTATATTATTTTTC
1 -CATTTAATTTAAATT-TTTTTC
162213895 CATTTAAATTT-AATTTTTTTC
1 CATTT-AATTTAAATTTTTTTC
*
162213916 TCATTTCATTTAAATTT
1 -CATTTAATTTAAATTT
162213933 AAATTTTTTT
Statistics
Matches: 103, Mismatches: 10, Indels: 30
0.72 0.07 0.21
Matches are distributed among these distances:
19 1 0.01
20 23 0.22
21 15 0.15
22 31 0.30
23 14 0.14
24 2 0.02
25 3 0.03
26 3 0.03
27 11 0.11
ACGTcount: A:0.25, C:0.13, G:0.00, T:0.62
Consensus pattern (21 bp):
CATTTAATTTAAATTTTTTTC
Found at i:162213812 original size:19 final size:20
Alignment explanation
Indices: 162213784--162213913 Score: 61
Period size: 20 Copynumber: 6.0 Consensus size: 20
162213774 ATTTCCATTT
162213784 CATTTAAA-TTATATTTTTTC
1 CATTTAAATTTA-ATTTTTTC
162213804 CATTT-AATTTAATTTTTTTCC
1 CATTTAAATTTAA-TTTTTT-C
*
162213825 TCATTTCATTTAATTT-ATCTATCTTCC
1 -CATTT-A---AATTTAAT-T-T-TTTC
* *
162213852 CATTTTAATTTATTTTTTTC
1 CATTTAAATTTAATTTTTTC
*
162213872 TCATTT-TATTTATATTATTTTTC
1 -CATTTAAATTTA-A-T-TTTTTC
162213895 CATTTAAATTTAATTTTTT
1 CATTTAAATTTAATTTTTT
162213914 TCTCATTTCA
Statistics
Matches: 85, Mismatches: 7, Indels: 36
0.66 0.05 0.28
Matches are distributed among these distances:
19 3 0.04
20 27 0.32
21 8 0.09
22 18 0.21
23 12 0.14
25 1 0.01
26 7 0.08
27 7 0.08
28 2 0.02
ACGTcount: A:0.25, C:0.12, G:0.00, T:0.63
Consensus pattern (20 bp):
CATTTAAATTTAATTTTTTC
Found at i:162213836 original size:27 final size:25
Alignment explanation
Indices: 162213804--162214144 Score: 189
Period size: 27 Copynumber: 14.0 Consensus size: 25
162213794 ATATTTTTTC
162213804 CATTTAATTTAATTTTTTTCCTCATTT
1 CATTTAATTT-ATTTTTTT-CTCATTT
* * *
162213831 CATTTAATTTATCTATCTTCCCA--T
1 CATTTAATTTAT-TTTTTTCTCATTT
162213855 --TTTAATTTATTTTTTTCTCATTT
1 CATTTAATTTATTTTTTTCTCATTT
*
162213878 TATTT-A--TATTATTTTTC-CATTT
1 CATTTAATTTATT-TTTTTCTCATTT
162213900 -A---AATTTAATTTTTTTCTCATTT
1 CATTTAATTT-ATTTTTTTCTCATTT
162213922 CATTTAAATTTAAATTTTTTTCTCATTT
1 CATTT-AATTT--ATTTTTTTCTCATTT
*
162213950 CATTTAATTTA----TCTCTCATTT
1 CATTTAATTTATTTTTTTCTCATTT
* *
162213971 CATTTTAATTTAATTTTTTTATCTTTT
1 CA-TTTAATTT-ATTTTTTTCTCATTT
162213998 CATTT-ATATTATTTTTTTC-CATTT
1 CATTTAAT-TTATTTTTTTCTCATTT
* *
162214022 -A---AATTTAATATTTTCCTCATTT
1 CATTTAATTT-ATTTTTTTCTCATTT
* * *
162214044 TATTTAAATTATCTTTATTT-TAATTT
1 CATTTAATTTAT-TTT-TTTCTCATTT
162214070 -A---AATTTAATTTTTTTCTCATTT
1 CATTTAATTT-ATTTTTTTCTCATTT
*
162214092 CATTTAAATTTATTTTTTTTCTCTTTT
1 CATTT-AATTTA-TTTTTTTCTCATTT
*
162214119 CATTTAAATTATCTTTCTTTC-CATTT
1 CATTTAATTTAT-TTT-TTTCTCATTT
162214145 TAATTTACAT
Statistics
Matches: 248, Mismatches: 23, Indels: 87
0.69 0.06 0.24
Matches are distributed among these distances:
19 1 0.00
20 2 0.01
21 38 0.15
22 52 0.21
23 14 0.06
24 6 0.02
25 18 0.07
26 34 0.14
27 62 0.25
28 21 0.08
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.63
Consensus pattern (25 bp):
CATTTAATTTATTTTTTTCTCATTT
Found at i:162213933 original size:33 final size:28
Alignment explanation
Indices: 162213906--162213960 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
162213896 ATTTAAATTT
162213906 AATTTTTTTCTCATTTCATTTAAATTT-A
1 AATTTTTTTCTCATTTCATTT-AATTTAA
162213934 AATTTTTTTCTCATTTCATTTAATTTA
1 AATTTTTTTCTCATTTCATTTAATTTA
162213961 TCTCTCATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 5 0.19
28 21 0.81
ACGTcount: A:0.27, C:0.11, G:0.00, T:0.62
Consensus pattern (28 bp):
AATTTTTTTCTCATTTCATTTAATTTAA
Found at i:162214035 original size:48 final size:47
Alignment explanation
Indices: 162213852--162214112 Score: 219
Period size: 48 Copynumber: 5.4 Consensus size: 47
162213842 TCTATCTTCC
* * *
162213852 CATTTTAATTTATTTTTTTCTCATTT-TATTTATATTATTTTTC-CATTT
1 CATTTAAATTTATCTTTTT-TCATTTAAATTTA-ATT-TTTTTCTCATTT
* * * **
162213900 AAATTTAATTTTTTTCTCATTTCATTTAAATTTAAATTTTTTTCTCATTT
1 -CATTTAA-ATTTATCTTTTTTCATTTAAATTT-AATTTTTTTCTCATTT
* * * *
162213950 CATTT-AATTTATCTCTCATTTCATTTTAATTTAATTTTTTTATCTTTT
1 CATTTAAATTTATCT-T-TTTTCATTTAAATTTAATTTTTTTCTCATTT
* * *
162213998 CATTTATA-TTAT-TTTTTTCCATTTAAATTTAATATTTTCCTCATTT
1 CATTTAAATTTATCTTTTTT-CATTTAAATTTAATTTTTTTCTCATTT
* *
162214044 TATTTAAA-TTATCTTTATTTTAATTTAAATTTAATTTTTTTCTCATTT
1 CATTTAAATTTATC-TT-TTTTCATTTAAATTTAATTTTTTTCTCATTT
*
162214092 CATTTAAATTTATTTTTTTTC
1 CATTTAAATTTATCTTTTTTC
162214113 TCTTTTCATT
Statistics
Matches: 170, Mismatches: 30, Indels: 26
0.75 0.13 0.12
Matches are distributed among these distances:
45 3 0.02
46 33 0.19
47 11 0.06
48 59 0.35
49 44 0.26
50 19 0.11
51 1 0.01
ACGTcount: A:0.25, C:0.10, G:0.00, T:0.64
Consensus pattern (47 bp):
CATTTAAATTTATCTTTTTTCATTTAAATTTAATTTTTTTCTCATTT
Found at i:162214077 original size:94 final size:96
Alignment explanation
Indices: 162213922--162214110 Score: 258
Period size: 94 Copynumber: 2.0 Consensus size: 96
162213912 TTTCTCATTT
* * * * *
162213922 CATTTAAATTTAAATTTTTTTCTCATTTCATTTAATTTATCTCTCATTTCATTTTAATTTAATTT
1 CATTTAAATTTAAATATTTTCCTCATTTCATTTAAATTATCTCTCATTTAATTTAAATTTAATTT
* *
162213987 TTTTATCTTTTCATTTATA-TTATTTTTTTC
66 TTTTATCATTTCATTTAAATTTATTTTTTTC
* *
162214017 CATTTAAATTT-AATATTTTCCTCATTTTATTTAAATTATCT-TTATTTTAATTTAAATTTAATT
1 CATTTAAATTTAAATATTTTCCTCATTTCATTTAAATTATCTCTCA-TTTAATTTAAATTTAATT
*
162214080 TTTTTCTCATTTCATTTAAATTTATTTTTTT
65 TTTTTATCATTTCATTTAAATTTATTTTTTT
162214111 TCTCTTTTCA
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
93 2 0.02
94 59 0.72
95 21 0.26
ACGTcount: A:0.26, C:0.10, G:0.00, T:0.63
Consensus pattern (96 bp):
CATTTAAATTTAAATATTTTCCTCATTTCATTTAAATTATCTCTCATTTAATTTAAATTTAATTT
TTTTATCATTTCATTTAAATTTATTTTTTTC
Found at i:162214103 original size:75 final size:76
Alignment explanation
Indices: 162214017--162214159 Score: 200
Period size: 75 Copynumber: 1.9 Consensus size: 76
162214007 TATTTTTTTC
*
162214017 CATTTAAATTTAATATTTTCCTCATTTT-ATTTAAATTATCTTTATTTTAATTTAAATTTA-ATT
1 CATTTAAATTTAATATTTTCCTC-TTTTCATTTAAATTATCTTTATTTCAATTTAAATTTACATT
162214080 TTTTTCTCATTT
65 TTTTTCTCATTT
* * * * * *
162214092 CATTTAAATTTATTTTTTTTCTCTTTTCATTTAAATTATCTTTCTTTCCATTTTAATTTACATTT
1 CATTTAAATTTAATATTTTCCTCTTTTCATTTAAATTATCTTTATTTCAATTTAAATTTACATTT
162214157 TTT
66 TTT
162214160 CATATTAATT
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
74 4 0.07
75 48 0.81
76 7 0.12
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (76 bp):
CATTTAAATTTAATATTTTCCTCTTTTCATTTAAATTATCTTTATTTCAATTTAAATTTACATTT
TTTTCTCATTT
Found at i:162214124 original size:48 final size:46
Alignment explanation
Indices: 162213804--162214125 Score: 206
Period size: 48 Copynumber: 6.7 Consensus size: 46
162213794 ATATTTTTTC
* * * * * *
162213804 CATTTAATTTAATTTTTTTCCTCATTTCATTTAATTTATCTATC-TTCC
1 CATTTAATTTATTTTTTTTCCT--TTTAATTTAATTTTTTTCTCATT-T
*
162213852 CATTTTAATTTATTTTTTTCTCATTTT-ATTTATATTATTTTTC-CATTT
1 CA-TTTAATTTATTTTTTT-TCCTTTTAATTTA-ATT-TTTTTCTCATTT
* * *
162213900 AAATTTAATTT-TTTTCTCATTTCATTTAAATTTAAATTTTTTTCTCATTT
1 -CATTTAATTTATTTT-T--TTTCCTTTTAATTT-AATTTTTTTCTCATTT
** * * *
162213950 CATTTAATTTATCTCTCATTTCATTTTAATTTAATTTTTTTATCTTTT
1 CATTTAATTTAT-T-TTTTTTCCTTTTAATTTAATTTTTTTCTCATTT
* * *
162213998 CATTT-ATATTA-TTTTTTTCCATTTAAATTTAATATTTTCCTCATTT
1 CATTTAAT-TTATTTTTTTTCC-TTTTAATTTAATTTTTTTCTCATTT
* * ** *
162214044 TATTTAAATTATCTTTATTTTAATTTAAATTTAATTTTTTTCTCATTT
1 CATTTAATTTAT-TTT-TTTTCCTTTTAATTTAATTTTTTTCTCATTT
*
162214092 CATTTAAATTTATTTTTTTTCTCTTTTCATTTAA
1 CATTT-AATTTATTTTTTTTC-CTTTTAATTTAA
162214126 ATTATCTTTC
Statistics
Matches: 217, Mismatches: 34, Indels: 46
0.73 0.11 0.15
Matches are distributed among these distances:
45 5 0.02
46 28 0.13
47 16 0.07
48 82 0.38
49 65 0.30
50 18 0.08
51 2 0.01
52 1 0.00
ACGTcount: A:0.25, C:0.12, G:0.00, T:0.63
Consensus pattern (46 bp):
CATTTAATTTATTTTTTTTCCTTTTAATTTAATTTTTTTCTCATTT
Found at i:162214144 original size:48 final size:48
Alignment explanation
Indices: 162213781--162214160 Score: 157
Period size: 48 Copynumber: 7.9 Consensus size: 48
162213771 TTCATTTCCA
* * *
162213781 TTTCATTTAAATTATATTT-TTTCCATTT-AATTTAATTTTTTTCCTCA
1 TTTCATTTAAATTATCTTTCTTTCCATTTAAATTT-ATTTTTTTTCTCT
* * * *
162213828 TTTCATTTAATTTATCTATCTTCCCATTTTAATTTA-TTTTTTTCTCAT
1 TTTCATTTAAATTATCTTTCTTTCCATTTAAATTTATTTTTTTTCTC-T
* * *
162213876 TTT-ATTTATATTA---TT-TTTCCATTTAAATTTAATTTTTTTCTCA
1 TTTCATTTAAATTATCTTTCTTTCCATTTAAATTTATTTTTTTTCTCT
** * * * * * *
162213919 TTTCATTTAAATTTAAATTTTTTTCTCATTT-CATTTAATTTATCTCTCA
1 TTTCATTTAAA-TTATCTTTCTTTC-CATTTAAATTTATTTTTTTTCTCT
* * * *
162213968 TTTCATTTTAATTTAATTTTTTTATCTTTTCATTTATA-TTA-TTTTTTTC-CAT
1 TTTCA-TTT-A---AATTATCTT-TCTTTCCATTTAAATTTATTTTTTTTCTC-T
** * * * **
162214020 TTAAATTTAATATTTTC-CTCATTT-TATTTAAA-TTATCTTTATTTT-AAT
1 TTTCATTTAA-ATTATCTTTC-TTTCCATTTAAATTTAT-TTT-TTTTCTCT
** * *
162214068 TTAAATTT-AATT-TTTTTCTCATTTCATTTAAATTTATTTTTTTTCTCT
1 TTTCATTTAAATTATCTTTCT--TTCCATTTAAATTTATTTTTTTTCTCT
* **
162214116 TTTCATTTAAATTATCTTTCTTTCCATTTTAATTTACATTTTTTC
1 TTTCATTTAAATTATCTTTCTTTCCATTTAAATTTATTTTTTTTC
162214161 ATATTAATTT
Statistics
Matches: 256, Mismatches: 44, Indels: 65
0.70 0.12 0.18
Matches are distributed among these distances:
43 17 0.07
44 17 0.07
45 5 0.02
46 16 0.06
47 44 0.17
48 68 0.27
49 41 0.16
50 15 0.06
51 5 0.02
52 9 0.04
53 12 0.05
54 7 0.03
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.63
Consensus pattern (48 bp):
TTTCATTTAAATTATCTTTCTTTCCATTTAAATTTATTTTTTTTCTCT
Found at i:162214145 original size:27 final size:27
Alignment explanation
Indices: 162214060--162214156 Score: 103
Period size: 27 Copynumber: 3.6 Consensus size: 27
162214050 AATTATCTTT
162214060 ATTTTAATTTAAATTTAATTTTTTTCTC
1 ATTTTAATTTAAATTT-ATTTTTTTCTC
*
162214088 A-TTTCATTTAAATTTATTTTTTTTCTC
1 ATTTTAATTTAAATTTA-TTTTTTTCTC
*
162214115 -TTTTCATTTAAA-TTATCTTTCTTTC-C
1 ATTTTAATTTAAATTTAT-TTT-TTTCTC
*
162214141 ATTTTAATTTACATTT
1 ATTTTAATTTAAATTT
162214157 TTTCATATTA
Statistics
Matches: 60, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
25 1 0.02
26 8 0.13
27 48 0.80
28 3 0.05
ACGTcount: A:0.25, C:0.11, G:0.00, T:0.64
Consensus pattern (27 bp):
ATTTTAATTTAAATTTATTTTTTTCTC
Found at i:162221455 original size:46 final size:46
Alignment explanation
Indices: 162221400--162221493 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
162221390 TTAAGGTGGG
162221400 AATTAAAGAAGTTAGGTGAATCTCAACATTCTTTACCTCATGGTTT
1 AATTAAAGAAGTTAGGTGAATCTCAACATTCTTTACCTCATGGTTT
162221446 AATTAAAGAAGTTAGGTGAATCTCAACATTCTTTACCTCATGGTTT
1 AATTAAAGAAGTTAGGTGAATCTCAACATTCTTTACCTCATGGTTT
162221492 AA
1 AA
162221494 GTACTTTTTG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (46 bp):
AATTAAAGAAGTTAGGTGAATCTCAACATTCTTTACCTCATGGTTT
Found at i:162228658 original size:27 final size:27
Alignment explanation
Indices: 162228624--162228686 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
162228614 TCCTTTTGAC
162228624 TTTT-GAAAAT-ATTTTCTATTTTTCAT
1 TTTTAGAAAATAATTTTC-ATTTTTCAT
*
162228650 TTTTAGAAAATAATTTTCATTTTTTAT
1 TTTTAGAAAATAATTTTCATTTTTCAT
162228677 TTTTA-AAAAT
1 TTTTAGAAAAT
162228687 TAAAAATATG
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
26 9 0.26
27 19 0.56
28 6 0.18
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (27 bp):
TTTTAGAAAATAATTTTCATTTTTCAT
Found at i:162233198 original size:12 final size:11
Alignment explanation
Indices: 162233169--162233202 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
162233159 ATTTTTTAAA
162233169 TATAAAAAATT
1 TATAAAAAATT
*
162233180 TAAAAAAAATAT
1 TATAAAAAAT-T
162233192 TATAAAAAATT
1 TATAAAAAATT
162233203 AGAAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TATAAAAAATT
Found at i:162236276 original size:26 final size:26
Alignment explanation
Indices: 162236240--162236349 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
162236230 TGATACAAAT
162236240 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
162236266 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
162236292 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
162236318 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
162236344 TGATAA
1 TGATAA
162236350 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:162238373 original size:136 final size:136
Alignment explanation
Indices: 162238129--162238413 Score: 552
Period size: 136 Copynumber: 2.1 Consensus size: 136
162238119 GAGTAGTCTC
162238129 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
162238194 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
162238259 CTGTTA
131 CTGTTA
162238265 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
162238330 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
162238395 CTGTTA
131 CTGTTA
**
162238401 CCTGAATGGGCTT
1 CCCAAATGGGCTT
162238414 AGGCCCAATG
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
136 147 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:162242191 original size:26 final size:26
Alignment explanation
Indices: 162242155--162242264 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
162242145 TGATACAAAT
162242155 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
162242181 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
162242207 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
162242233 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
162242259 TGATAA
1 TGATAA
162242265 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:162244299 original size:127 final size:128
Alignment explanation
Indices: 162244045--162244320 Score: 455
Period size: 136 Copynumber: 2.1 Consensus size: 128
162244035 GAGTAGTCTC
162244045 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
162244110 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCT-------A-TTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
162244175 CTGTTA
123 CTGTTA
162244181 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
162244246 GTTATCTGAATAAGGGGCT-TTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTGTTA
66 GTTATCTGAATAAGGGGCTATTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTGTTA
**
162244308 CCTGAATGGGCTT
1 CCCAAATGGGCTT
162244321 AGGCCCAATG
Statistics
Matches: 138, Mismatches: 2, Indels: 9
0.93 0.01 0.06
Matches are distributed among these distances:
127 54 0.39
136 84 0.61
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (128 bp):
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTATTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTGTTA
Found at i:162247641 original size:40 final size:39
Alignment explanation
Indices: 162247596--162247801 Score: 195
Period size: 40 Copynumber: 5.2 Consensus size: 39
162247586 CGGAATACAA
*
162247596 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
162247636 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
162247676 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
162247716 CCGGATGGT---CACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGAT-ATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
162247754 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
162247794 CCGGATAT
1 CCGGATAT
162247802 CATTCAATTG
Statistics
Matches: 140, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
37 5 0.04
38 27 0.19
40 104 0.74
41 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:162247784 original size:78 final size:80
Alignment explanation
Indices: 162247596--162247800 Score: 229
Period size: 78 Copynumber: 2.6 Consensus size: 80
162247586 CGGAATACAA
* * *
162247596 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT
1 CCGGATATAACAACTA-GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAAT
*
162247660 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * * **
162247676 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GGTC-ACTAGCAC-AATG
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAAT-
*
162247738 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * * *
162247754 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
162247801 TCATTCAATT
Statistics
Matches: 106, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
77 3 0.03
78 59 0.56
79 2 0.02
80 42 0.40
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:162255684 original size:40 final size:39
Alignment explanation
Indices: 162255639--162255846 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
162255629 CGGAATACAA
*
162255639 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
162255679 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
162255719 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
162255759 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
162255799 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
162255839 CCGGATAT
1 CCGGATAT
162255847 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:162255779 original size:80 final size:80
Alignment explanation
Indices: 162255639--162255845 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
162255629 CGGAATACAA
* * *
162255639 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
162255703 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
162255719 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
162255783 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
162255799 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
162255846 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:162259904 original size:2 final size:2
Alignment explanation
Indices: 162259897--162259932 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
162259887 ATGAGTTCGG
*
162259897 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
162259933 GCATTCGGCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:162261137 original size:47 final size:47
Alignment explanation
Indices: 162261068--162261218 Score: 182
Period size: 47 Copynumber: 3.3 Consensus size: 47
162261058 ATCTTAAGAT
162261068 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
* ** * *
162261115 CGAATGGGCAATGTGATGAATGTGAAAGTGCATACATGTGATACGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
** * *
162261162 CGAATGGTTAATGTGAT-ATATGTGTAA--GTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGTGTGTATATGTGATAAGGC
*
162261207 CGAATGACCAAT
1 CGAATGGCCAAT
162261219 TGTGTAAAGT
Statistics
Matches: 87, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
45 22 0.25
46 1 0.01
47 64 0.74
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
Found at i:162262519 original size:40 final size:40
Alignment explanation
Indices: 162262473--162262697 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
162262463 CTTGCACAAG
* * *
162262473 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
162262513 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
162262553 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
162262593 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
162262633 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
162262674 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
162262698 CATTCGAATA
Statistics
Matches: 159, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.81
41 29 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:162262568 original size:80 final size:80
Alignment explanation
Indices: 162262437--162262697 Score: 312
Period size: 80 Copynumber: 3.3 Consensus size: 80
162262427 CTCAAGTAAT
* * * * * * *
162262437 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
162262500 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
162262515 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
162262579 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
162262595 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
162262660 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
162262676 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
162262698 CATTCGAATA
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 12 0.08
79 16 0.10
80 94 0.61
81 33 0.21
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:162270540 original size:40 final size:40
Alignment explanation
Indices: 162270494--162270717 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
162270484 CTTGCACAAG
* * *
162270494 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
162270534 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
162270574 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
162270614 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
162270654 GCCTTC-GATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
162270694 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
162270718 CATTCGAATA
Statistics
Matches: 157, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 18 0.11
40 126 0.80
41 13 0.08
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:162270589 original size:80 final size:79
Alignment explanation
Indices: 162270458--162270717 Score: 310
Period size: 80 Copynumber: 3.3 Consensus size: 79
162270448 CTCAAGTAAT
* * * * * * *
162270458 CTTCGGGATTTAG-CCGGATATAACTACTTGCACAAGGCCTTCGGGTCTTAGCCCGGATGTGGTC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAGTC
*
162270522 ACTAGCATAAATGC
66 ACTAGCACAAATGC
* *
162270536 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAG
*
162270600 TCGCTAGCACAAATGC
64 TCACTAGCACAAATGC
* * * * *
162270616 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTC-GATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAGT
*
162270680 CACCTAGCACAAAAGC
65 CA-CTAGCACAAATGC
162270696 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
162270718 CATTCGAATA
Statistics
Matches: 156, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
78 12 0.08
79 33 0.21
80 111 0.71
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAGTC
ACTAGCACAAATGC
Found at i:162270687 original size:120 final size:118
Alignment explanation
Indices: 162270458--162270717 Score: 321
Period size: 120 Copynumber: 2.2 Consensus size: 118
162270448 CTCAAGTAAT
* * *
162270458 CTTCGGGATTTAG-CCGGATATAACTACTTGCACAAGGCCTTCGGGTCTTAGCCCGGATGTGGTC
1 CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGGGTCTTAGCCCGGATATAGTC
* *
162270522 ACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
66 ACTAGCACAAATGCCTTC-GGACTTAGCCCGGATATAGTCACTAGCACAAAAGC
* * *
162270576 CTTCGGGTTTTAGCCCGGATATAA-TCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGATTTAGCCCGGATATAACT-ACTAGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATAG
* * * *
162270640 -CAACTCGCACGAATGCCTTC-GATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
64 TC-ACTAGCACAAATGCCTTCGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAAAGC
*
162270696 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGATTTAGCCCGGATAT
162270718 CATTCGAATA
Statistics
Matches: 122, Mismatches: 14, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
118 15 0.12
119 34 0.28
120 73 0.60
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (118 bp):
CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGGGTCTTAGCCCGGATATAGTC
ACTAGCACAAATGCCTTCGGACTTAGCCCGGATATAGTCACTAGCACAAAAGC
Found at i:162274337 original size:40 final size:39
Alignment explanation
Indices: 162274279--162274590 Score: 408
Period size: 40 Copynumber: 7.8 Consensus size: 39
162274269 GCCGATGATC
*
162274279 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGTTATATT
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATA-T
* * * *
162274319 CGGGCTAAGTCACAAAGAGCATACGTACTGGTGTTATAT
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATAT
* * *
162274358 CCGGCTAAGTCCCGAAGAGCATACCTGCTGGTGTTATAT
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATAT
* *
162274397 CTGGGCTAAGTCTCGGAGAGCATTCGTGCTGGTGTTATAT
1 C-GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATAT
*
162274437 CTGGGCTAAGTCCCGAAGACCATTCGTGCTGGTGTTATAT
1 C-GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATAT
* *
162274477 CCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTATAT
1 -CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATAT
* *
162274517 CAGGGTTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATAT
1 C-GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATAT
* * *
162274557 CCGGTCTAGGTCCCGAAGAGCATTCATGCTGGTG
1 -CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
162274591 ATGTGTATTC
Statistics
Matches: 240, Mismatches: 28, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.15
40 201 0.84
41 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATAT
Found at i:162274804 original size:25 final size:25
Alignment explanation
Indices: 162274754--162274804 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
162274744 TGTGTAACAA
*
162274754 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGGGGCACTATGAGTG
*
162274779 CAAATGATTAGGGGCACTGA-GAGTG
1 CAAATGAATAGGGGCACT-ATGAGTG
162274804 C
1 C
162274805 GAGTTCTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.31, C:0.14, G:0.33, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGGGGCACTATGAGTG
Found at i:162278471 original size:40 final size:40
Alignment explanation
Indices: 162278426--162278642 Score: 267
Period size: 40 Copynumber: 5.4 Consensus size: 40
162278416 CTTGCACAAG
* * *
162278426 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
162278466 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
162278506 GCCTTC-GGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
162278545 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
162278585 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
162278626 GCCTTCGGGACTTAGCC
1 GCCTTCGGGTCTTAGCC
162278643 TAGATATCAT
Statistics
Matches: 151, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.25
40 91 0.60
41 23 0.15
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:162278520 original size:79 final size:79
Alignment explanation
Indices: 162278390--162278642 Score: 278
Period size: 79 Copynumber: 3.2 Consensus size: 79
162278380 CTCAAGTAAT
* * * * * * * *
162278390 CTTCGAGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTC-GGTCTTAGCCCGGATATAGT
*
162278453 CACTAGCATAAATGC
65 CACTAGCACAAATGC
* * *
162278468 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGTTTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGTCTTAGCCCGGATATAGT
*
162278532 CGCTAGCACAAATGC
65 CACTAGCACAAATGC
* * * * *
162278547 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGG-TCTTAGCCCGGATATAGT
*
162278612 CACCTAGCACAAAAGC
65 CA-CTAGCACAAATGC
162278628 CTTCGGGACTTAGCC
1 CTTCGGGACTTAGCC
162278643 TAGATATCAT
Statistics
Matches: 146, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
78 12 0.08
79 84 0.58
80 24 0.16
81 26 0.18
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGTCTTAGCCCGGATATAGTC
ACTAGCACAAATGC
Found at i:162283970 original size:40 final size:40
Alignment explanation
Indices: 162283911--162284052 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
162283901 AAATTGAATG
* * *
162283911 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
162283951 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
162283991 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
162284031 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
162284053 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:162284053 original size:40 final size:39
Alignment explanation
Indices: 162283950--162284078 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
162283940 TGCTGGAAAT
* * *
162283950 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
162283990 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
162284030 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
162284070 TATATCCGG
1 TATATCCGG
162284079 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:162291840 original size:17 final size:19
Alignment explanation
Indices: 162291817--162291862 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
162291807 AAGAAGCATG
162291817 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
162291835 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
162291853 AATCATGCTC
1 AATCATGCTC
162291863 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:162298850 original size:40 final size:40
Alignment explanation
Indices: 162298805--162298969 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
162298795 CGGAATATAA
162298805 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
162298845 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
162298885 CCGG--ATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
162298923 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
162298962 CCGGATAT
1 CCGGATAT
162298970 CATTCAATTT
Statistics
Matches: 103, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
38 30 0.29
39 14 0.14
40 59 0.57
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:162298926 original size:38 final size:37
Alignment explanation
Indices: 162298821--162298929 Score: 128
Period size: 38 Copynumber: 2.8 Consensus size: 37
162298811 ATAATCACGT
* *
162298821 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT--AACAACTA
* *
162298861 GCACGAATGCCTTCGGGCCTTAGCCCGGATAACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAACAACTA
*
162298899 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
162298930 TAATTTCCAG
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
37 2 0.03
38 31 0.51
40 28 0.46
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (37 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAACAACTA
Found at i:162298953 original size:78 final size:77
Alignment explanation
Indices: 162298821--162298968 Score: 192
Period size: 78 Copynumber: 1.9 Consensus size: 77
162298811 ATAATCACGT
*
162298821 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
162298886 CGGATAACCACTA
65 CGGATAACCACTA
* * ** * *
162298899 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
162298962 CCGGATA
64 CCGGATA
162298969 TCATTCAATT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
77 16 0.26
78 45 0.74
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (77 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATAACCACTA
Found at i:162299814 original size:17 final size:19
Alignment explanation
Indices: 162299791--162299836 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
162299781 AAGAAGCATG
162299791 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
162299809 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
162299827 AATCATGCTC
1 AATCATGCTC
162299837 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:162301834 original size:15 final size:15
Alignment explanation
Indices: 162301814--162301869 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
162301804 GTATCTTGGG
*
162301814 TTTCTTTTTTCTGGA
1 TTTCTTTATTCTGGA
162301829 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
162301844 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
162301859 TTTCTTTATTC
1 TTTCTTTATTC
162301870 GGTTTCCTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
14 2 0.06
15 32 0.89
16 2 0.06
ACGTcount: A:0.11, C:0.16, G:0.11, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:162304320 original size:46 final size:45
Alignment explanation
Indices: 162304270--162304445 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
162304260 TGGTTGAGCA
*
162304270 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
162304316 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* **
162304363 TCCGAGCTCGTTGAGTTGAGTCAAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
162304409 CCCGACCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
162304446 GCGGGTTACG
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.62
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:162304426 original size:93 final size:93
Alignment explanation
Indices: 162304267--162304437 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
162304257 GGATGGTTGA
** * *
162304267 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCAAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
162304332 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
162304360 GCATCCGAGCTCGTTGAGTTGAGTCAAAGTTCACTTATGGATGCGAACGCCCGACCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCAAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
162304425 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
162304438 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCAAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:162307695 original size:16 final size:14
Alignment explanation
Indices: 162307670--162307740 Score: 54
Period size: 16 Copynumber: 4.5 Consensus size: 14
162307660 TTCTAAATTG
162307670 TATATATATTATTTT
1 TATAT-TATTATTTT
162307685 ATATATGTATTATATATT
1 -TATAT-TATTAT-T-TT
162307703 TATATTATTATTTACT
1 TATATTATTATTT--T
162307719 TATATT-TTATTATAT
1 TATATTATTATT-T-T
162307734 TATATTA
1 TATATTA
162307741 CTTCATAATT
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
14 1 0.02
15 13 0.28
16 25 0.53
17 6 0.13
18 2 0.04
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (14 bp):
TATATTATTATTTT
Found at i:162307759 original size:28 final size:26
Alignment explanation
Indices: 162307702--162307752 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
162307692 TATTATATAT
162307702 TTATATTATTATTTACTTATATTTTA
1 TTATATTATTATTTACTTATATTTTA
162307728 TTATATTA-TA-TTACTTCATAATTTT
1 TTATATTATTATTTACTT-AT-ATTTT
162307753 CTATTATCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 6 0.26
25 4 0.17
26 13 0.57
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (26 bp):
TTATATTATTATTTACTTATATTTTA
Found at i:162307894 original size:16 final size:16
Alignment explanation
Indices: 162307875--162307949 Score: 56
Period size: 16 Copynumber: 4.9 Consensus size: 16
162307865 TTTAACAATA
162307875 TATTATTTCATATTAT
1 TATTATTTCATATTAT
162307891 TATTA--TC-TATTA-
1 TATTATTTCATATTAT
*
162307903 TATATATTTTCATGTATAT
1 TAT-TA-TTTCATAT-TAT
*
162307922 TATTA-TTCACATTAT
1 TATTATTTCATATTAT
162307937 TATT-TTT-ATATTA
1 TATTATTTCATATTA
162307950 AATTGATATT
Statistics
Matches: 47, Mismatches: 4, Indels: 18
0.68 0.06 0.26
Matches are distributed among these distances:
12 3 0.06
13 7 0.15
14 7 0.15
15 9 0.19
16 12 0.26
17 2 0.04
18 4 0.09
19 3 0.06
ACGTcount: A:0.32, C:0.07, G:0.01, T:0.60
Consensus pattern (16 bp):
TATTATTTCATATTAT
Found at i:162308045 original size:20 final size:20
Alignment explanation
Indices: 162308020--162308059 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
162308010 TTTATCCAAA
*
162308020 ACTATTTTATAAATT-ATTAT
1 ACTATTTCA-AAATTCATTAT
162308040 ACTATTTCAAAATTCATTAT
1 ACTATTTCAAAATTCATTAT
162308060 TAATTACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (20 bp):
ACTATTTCAAAATTCATTAT
Found at i:162308086 original size:21 final size:22
Alignment explanation
Indices: 162308052--162308095 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
162308042 TATTTCAAAA
*
162308052 TTCATTATTAATT-ACTATGTT
1 TTCATTATTAATTAAATATGTT
162308073 TTCATGTATT-ATTAAATATGTT
1 TTCAT-TATTAATTAAATATGTT
162308095 T
1 T
162308096 ATTATCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (22 bp):
TTCATTATTAATTAAATATGTT
Found at i:162312756 original size:42 final size:42
Alignment explanation
Indices: 162312650--162312768 Score: 116
Period size: 43 Copynumber: 2.8 Consensus size: 42
162312640 CGGAAAGCTC
* * * * *
162312650 GTACAATGCCAACATCCTAGACGTGGTCTTACATGTAATCAA
1 GTACGATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAA
* * *
162312692 ATATCGATGCC-ACTGTCTCAGACAG-GGTCTTATACGAAATCAA
1 GTA-CGATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATCAA
*
162312735 GTACGATGCCAACGTCCCAGACGTGCTCTTACAC
1 GTACGATGCCAACGTCCCAGACGTGGTCTTACAC
162312769 CATAACACAT
Statistics
Matches: 60, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
41 1 0.02
42 27 0.45
43 31 0.52
44 1 0.02
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (42 bp):
GTACGATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAA
Found at i:162322082 original size:93 final size:93
Alignment explanation
Indices: 162321970--162322140 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
162321960 GCCCATAAGT
* *
162321970 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
162322035 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
162322063 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
162322128 CGAGTTCGGATGC
66 CGAGTTCGGATGC
162322141 TAACCATCCT
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:162322137 original size:46 final size:46
Alignment explanation
Indices: 162321962--162322137 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
162321952 TGTAACCCGC
* * *
162321962 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
162322008 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
162322058 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
162322101 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
162322138 TGCTAACCAT
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:162324553 original size:30 final size:30
Alignment explanation
Indices: 162324509--162324597 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
162324499 CAAAGATAAC
162324509 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
162324538 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
162324568 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
162324598 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:162324557 original size:15 final size:15
Alignment explanation
Indices: 162324509--162324588 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
162324499 CAAAGATAAC
*
162324509 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
162324523 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
162324538 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
162324553 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
162324568 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
162324583 AAGAAA
1 AAGAAA
162324589 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:162324597 original size:15 final size:15
Alignment explanation
Indices: 162324520--162324597 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
162324510 AGAAAACCGA
162324520 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
162324535 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
162324549 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
162324564 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
162324580 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
162324595 ATA
1 ATA
162324598 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:162327664 original size:46 final size:48
Alignment explanation
Indices: 162327542--162327671 Score: 164
Period size: 46 Copynumber: 2.8 Consensus size: 48
162327532 TGTAACCCGC
162327542 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * *
162327592 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A-TTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT-ACAT
162327635 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
162327672 TGCTAACCAT
Statistics
Matches: 71, Mismatches: 5, Indels: 12
0.81 0.06 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 29 0.41
47 29 0.41
48 2 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (48 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Found at i:162330404 original size:29 final size:28
Alignment explanation
Indices: 162330370--162330472 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
162330360 TACTCAATCA
*
162330370 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
162330399 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
162330428 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
162330457 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
162330473 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:162338388 original size:27 final size:28
Alignment explanation
Indices: 162338332--162338401 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
162338322 AAATTTGTAC
162338332 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
162338360 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
162338387 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
162338402 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:162338412 original size:27 final size:27
Alignment explanation
Indices: 162338332--162338413 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
162338322 AAATTTGTAC
* *
162338332 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
162338360 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
162338387 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
162338414 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:162346183 original size:27 final size:28
Alignment explanation
Indices: 162346127--162346196 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
162346117 AAATTTGTAC
162346127 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
162346155 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
162346182 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
162346197 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:162346207 original size:27 final size:27
Alignment explanation
Indices: 162346127--162346208 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
162346117 AAATTTGTAC
* *
162346127 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
162346155 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
162346182 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
162346209 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:162351314 original size:47 final size:47
Alignment explanation
Indices: 162351263--162351734 Score: 801
Period size: 47 Copynumber: 10.1 Consensus size: 47
162351253 GATTCTATGA
*
162351263 GATGAATGTGAACATGCATATGTGTGATAATGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* *
162351310 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
162351357 GATGAATG-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
162351403 GATGAATG-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * *
162351449 GATGAATGTCAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
162351496 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
*
162351543 GATAAATG-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
162351589 GATGAATG-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
*
162351635 GATGAATGTGAACATGCA-ATTATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATA-TGTGTGATAAGGCCGAATGGCCAATGT
* **
162351682 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
162351729 GATGAA
1 GATGAA
162351735 CGTGGAAGTG
Statistics
Matches: 405, Mismatches: 16, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
46 182 0.45
47 222 0.55
48 1 0.00
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
Found at i:162351426 original size:139 final size:141
Alignment explanation
Indices: 162351263--162351734 Score: 819
Period size: 139 Copynumber: 3.4 Consensus size: 141
162351253 GATTCTATGA
*
162351263 GATGAATGTGAACATGCATATGTGTGATAATGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
162351328 AATATGTGATAAGGCCGAATGGCCAATGTGATGAATG-GAACATGCATATGTGTGATAAGGCCGA
66 AATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
162351392 ATGGCCAATGT
131 ATGGCCAATGT
*
162351403 GATGAATG-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTCAACATGCA
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
162351467 AATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
66 AATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
162351532 ATGGCCAATGT
131 ATGGCCAATGT
*
162351543 GATAAATG-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG-GAACATGCA
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
* * *
162351606 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA-ATTATGTGATAAGGCCG
66 AATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATA-TGTGTGATAAGGCCG
162351670 AATGGCCAATGT
130 AATGGCCAATGT
* **
162351682 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGTGATGAA
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAA
162351735 CGTGGAAGTG
Statistics
Matches: 318, Mismatches: 11, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
138 1 0.00
139 177 0.56
140 140 0.44
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (141 bp):
GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
AATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
ATGGCCAATGT
Found at i:162351577 original size:186 final size:186
Alignment explanation
Indices: 162351263--162351731 Score: 848
Period size: 186 Copynumber: 2.5 Consensus size: 186
162351253 GATTCTATGA
* * *
162351263 GATGAATGTGAACATGCATATGTGTGATAATGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
* *
162351328 AATATGTGATAAGGCCGAATGGCCAATGTGATGAATGGAACATGCATATGTGTGATAAGGCCGAA
66 TATATGTGATAAGGCCGAATGGCCAATGTGATAAATGGAACATGCATATGTGTGATAAGGCCGAA
162351393 TGGCCAATGTGATGAATGGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
131 TGGCCAATGTGATGAATGGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
*
162351449 GATGAATGTCAACATGCAAATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
*
162351514 TATGTGTGATAAGGCCGAATGGCCAATGTGATAAATGGAACATGCATATGTGTGATAAGGCCGAA
66 TATATGTGATAAGGCCGAATGGCCAATGTGATAAATGGAACATGCATATGTGTGATAAGGCCGAA
162351579 TGGCCAATGTGATGAATGGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
131 TGGCCAATGTGATGAATGGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
*
162351635 GATGAATGTGAACATGCAATTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
**
162351700 TATATGTGATAAGGTAGAATGGCCAATGTGAT
66 TATATGTGATAAGGCCGAATGGCCAATGTGAT
162351732 GAACGTGGAA
Statistics
Matches: 271, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
186 271 1.00
ACGTcount: A:0.34, C:0.13, G:0.29, T:0.25
Consensus pattern (186 bp):
GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
TATATGTGATAAGGCCGAATGGCCAATGTGATAAATGGAACATGCATATGTGTGATAAGGCCGAA
TGGCCAATGTGATGAATGGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
Found at i:162364525 original size:18 final size:19
Alignment explanation
Indices: 162364491--162364538 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
162364481 TTCCTGTCAG
**
162364491 AAAATAATTAATTTTTA-T
1 AAAATAATTAAAGTTTACT
162364509 AAAATAATTAAAGTTTACTT
1 AAAATAATTAAAGTTTAC-T
162364529 AAAAT-ATTAA
1 AAAATAATTAA
162364539 CATGTTGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 15 0.58
19 5 0.19
20 6 0.23
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (19 bp):
AAAATAATTAAAGTTTACT
Done.