Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 525 of 770
Found at i:163072392 original size:40 final size:40
Alignment explanation
Indices: 163072297--163072479 Score: 231
Period size: 40 Copynumber: 4.5 Consensus size: 40
163072287 GTGTCCGGGC
* * * ** *
163072297 TAAGTCCCGAAGGCTTTTGTGCTAAGTGATTAAATCTGGGT
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAACTGGGT
* * *
163072338 CAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACTGGGT
163072378 TAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACTGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACTGGGT
* * *
163072418 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACTGGGT
* *
163072458 TAATTCCCGAAGGCAATTGTGC
1 TAAGTCCCGAAGGCATTTGTGC
163072480 AAATTACTAT
Statistics
Matches: 125, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 106 0.85
41 19 0.15
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACTGGGT
Found at i:163072487 original size:40 final size:40
Alignment explanation
Indices: 163072293--163072509 Score: 229
Period size: 40 Copynumber: 5.4 Consensus size: 40
163072283 AATGGTGTCC
* * * * *
163072293 GGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGATTAAATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAACT
* * *
163072334 GGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACC
1 GGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAACT
* *
163072374 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAACT
* *
163072414 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAACT
* * * * * *
163072454 GGGCTAATTCCCGAAGGCAATTGTGCAAATTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAACT
* *
163072494 GAGCTATGTCCCGAAG
1 GGGCTAAGTCCCGAAG
163072510 ATAATCGAGC
Statistics
Matches: 151, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
40 128 0.85
41 23 0.15
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAACT
Found at i:163076899 original size:11 final size:11
Alignment explanation
Indices: 163076868--163076913 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
163076858 ATGAATATAA
163076868 CATGTGCATAT
1 CATGTGCATAT
*
163076879 CA--TACATAT
1 CATGTGCATAT
163076888 CATGTGCATAT
1 CATGTGCATAT
*
163076899 CATGT-CAAAT
1 CATGTGCATAT
163076909 CATGT
1 CATGT
163076914 ATATCAGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
9 8 0.27
10 9 0.30
11 13 0.43
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.35
Consensus pattern (11 bp):
CATGTGCATAT
Found at i:163081261 original size:6 final size:6
Alignment explanation
Indices: 163081246--163081456 Score: 186
Period size: 6 Copynumber: 34.8 Consensus size: 6
163081236 AACCAAAATG
* *
163081246 AGAATC AGAATT AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
163081294 AGTAA-C AGAATT AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
*
163081343 AGAATC AGAATC AGTAA-C AGAATC AGAATC AGTAA-C AGAATC AAAATC
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AG-AATC AGAATC AGAATC
* * * *
163081391 AGAATC AGTATT AGTAA-C AGAATC AGAATC AGAATC AGAATT ACGTGA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC
163081440 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
163081457 GTGAATGCAA
Statistics
Matches: 167, Mismatches: 20, Indels: 36
0.75 0.09 0.16
Matches are distributed among these distances:
5 13 0.08
6 139 0.83
7 12 0.07
8 3 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:163081379 original size:109 final size:103
Alignment explanation
Indices: 163081251--163081456 Score: 322
Period size: 103 Copynumber: 1.9 Consensus size: 103
163081241 AAATGAGAAT
* *
163081251 CAGAATTAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATTAGAATCAGAA
1 CAGAATCAGAATCAGTAACAGAATCAAAATCAGAATCAATATTAGTAAC------AGAATCAGAA
*
163081316 TCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATCAGTAA
60 TCAGAATCAGAATTACGTGACAGAATCAGAATCAGAATCAGTAA
*
163081360 CAGAATCAGAATCAGTAACAGAATCAAAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAA
1 CAGAATCAGAATCAGTAACAGAATCAAAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAA
163081425 TCAGAATTACGTGACAGAATCAGAATCAGAAT
66 TCAGAATTACGTGACAGAATCAGAATCAGAAT
163081457 GTGAATGCAA
Statistics
Matches: 93, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
103 47 0.51
109 46 0.49
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (103 bp):
CAGAATCAGAATCAGTAACAGAATCAAAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAA
TCAGAATTACGTGACAGAATCAGAATCAGAATCAGTAA
Found at i:163081611 original size:27 final size:26
Alignment explanation
Indices: 163081574--163081639 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
163081564 AGCATGGCTG
* *
163081574 CCAGAACAGATATCGTGACTGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
163081600 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
163081627 CCAGAATCAGATA
1 CCAGAA-CAGATA
163081640 ATGTGGCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:163081654 original size:27 final size:27
Alignment explanation
Indices: 163081598--163081655 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
163081588 GTGACTGAGT
* * *
163081598 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
163081625 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
163081652 CACC
1 CACC
163081656 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:163081860 original size:22 final size:22
Alignment explanation
Indices: 163081812--163081870 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
163081802 GTAAATACGT
*
163081812 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
163081834 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
163081856 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
163081871 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:163082037 original size:27 final size:26
Alignment explanation
Indices: 163081958--163082040 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
163081948 TCGATCGGTC
* * *
163081958 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
163081984 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
163082011 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
163082038 AAC
1 AAC
163082041 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:163082270 original size:27 final size:26
Alignment explanation
Indices: 163082240--163082425 Score: 201
Period size: 27 Copynumber: 7.0 Consensus size: 26
163082230 GGGCAAAATG
* * * *
163082240 GTAATTTTATCCTACAAAGGTATCTC
1 GTAATTCTACCCTACAAGGGTATTTC
*
163082266 AGTAATTCTACCCTACAGGGGTATTTC
1 -GTAATTCTACCCTACAAGGGTATTTC
*
163082293 GTATTTCTACCCTACAAGGGTATTTC
1 GTAATTCTACCCTACAAGGGTATTTC
* *
163082319 GATAATTCTACCCTACAGGGGTATTTTG
1 G-TAATTCTACCCTACAAGGGTA-TTTC
* *
163082347 GTAATTCTATCCTATAAGGGTATTTC
1 GTAATTCTACCCTACAAGGGTATTTC
* *
163082373 AGTAATTCTACCCTATAGGGGTATTTC
1 -GTAATTCTACCCTACAAGGGTATTTC
* *
163082400 AGAAATTCTACCCTACAGGGGTATTT
1 -GTAATTCTACCCTACAAGGGTATTT
163082426 TAGTAATTTC
Statistics
Matches: 138, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 28 0.20
27 106 0.77
28 4 0.03
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (26 bp):
GTAATTCTACCCTACAAGGGTATTTC
Found at i:163082308 original size:53 final size:53
Alignment explanation
Indices: 163082240--163082433 Score: 246
Period size: 54 Copynumber: 3.6 Consensus size: 53
163082230 GGGCAAAATG
* * * *
163082240 GTAATTTTATCCTACAAAGGTATCTCAGTAATTCTACCCTACAGGGGTATTTC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* *
163082293 GTATTTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTA-TTTC
* * *
163082347 GTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * *
163082400 AGAAATTCTACCCTACAGGGGTATTTTAGTAATT
1 -GTAATTCTACCCTACAAGGGTATTTCAGTAATT
163082434 TCACAATCAA
Statistics
Matches: 121, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 1 0.01
53 45 0.37
54 74 0.61
55 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (53 bp):
GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
Found at i:163082412 original size:81 final size:80
Alignment explanation
Indices: 163082266--163082433 Score: 248
Period size: 81 Copynumber: 2.1 Consensus size: 80
163082256 AAGGTATCTC
* *
163082266 AGTAATTCTACCCTACAGGGGTATTTCGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACC
1 AGTAATTCTACCCTACAAGGGTATTTCGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
163082331 CTACAGGGGTATTTT
66 CTACAGGGGTATTTT
* * * * *
163082346 GGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGA-AATTCTA
1 AGTAATTCTACCCTACAAGGGTATTTC-GTAATTCTACCCTACAAGGGTATTTC-GATAATTCTA
163082410 CCCTACAGGGGTATTTT
64 CCCTACAGGGGTATTTT
163082427 AGTAATT
1 AGTAATT
163082434 TCACAATCAA
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
80 23 0.29
81 53 0.68
82 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (80 bp):
AGTAATTCTACCCTACAAGGGTATTTCGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
CTACAGGGGTATTTT
Found at i:163082433 original size:27 final size:27
Alignment explanation
Indices: 163082266--163082433 Score: 205
Period size: 27 Copynumber: 6.3 Consensus size: 27
163082256 AAGGTATCTC
163082266 AGTAATTCTACCCTACAGGGGTA-TTT
1 AGTAATTCTACCCTACAGGGGTATTTT
* * *
163082292 CGTATTTCTACCCTACAAGGGTA-TTT
1 AGTAATTCTACCCTACAGGGGTATTTT
*
163082318 CGATAATTCTACCCTACAGGGGTATTTT
1 AG-TAATTCTACCCTACAGGGGTATTTT
* * * * *
163082346 GGTAATTCTATCCTATAAGGGTATTTC
1 AGTAATTCTACCCTACAGGGGTATTTT
* *
163082373 AGTAATTCTACCCTATAGGGGTATTTC
1 AGTAATTCTACCCTACAGGGGTATTTT
*
163082400 AGAAATTCTACCCTACAGGGGTATTTT
1 AGTAATTCTACCCTACAGGGGTATTTT
163082427 AGTAATT
1 AGTAATT
163082434 TCACAATCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
26 25 0.20
27 94 0.76
28 4 0.03
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (27 bp):
AGTAATTCTACCCTACAGGGGTATTTT
Found at i:163082448 original size:107 final size:107
Alignment explanation
Indices: 163082238--163082448 Score: 266
Period size: 107 Copynumber: 2.0 Consensus size: 107
163082228 AGGGGCAAAA
* * *
163082238 TGGTAATTTTATCCTACAAAGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGTATTTCTAC
1 TGGTAATTCTATCCTACAAAGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGAAATTCTAC
* ** *
163082303 CCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
66 CCTACAAGGGTATTTAGATAATTCTACAATACAAGGGTATTT
* * * *
163082345 TGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGAAATTCTA
1 TGGTAATTCTATCCTACAAAGGTATCTCAGTAATTCTACCCTACAGGGGTATTTC-GAAATTCTA
*
163082410 CCCTACAGGGGTATTTTAG-TAATT-TCACAAT-CAAGGGTA
65 CCCTACAAGGGTA-TTTAGATAATTCT-ACAATACAAGGGTA
163082449 AAACGGTAAT
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
107 58 0.65
108 27 0.30
109 4 0.04
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (107 bp):
TGGTAATTCTATCCTACAAAGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGAAATTCTAC
CCTACAAGGGTATTTAGATAATTCTACAATACAAGGGTATTT
Found at i:163082468 original size:27 final size:27
Alignment explanation
Indices: 163082438--163082523 Score: 127
Period size: 27 Copynumber: 3.2 Consensus size: 27
163082428 GTAATTTCAC
* *
163082438 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* **
163082465 AATCGAGGGTAAAACGATAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTTTGTA
163082492 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
163082519 AATCG
1 AATCG
163082524 GGAGTAGTTT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:163082552 original size:54 final size:53
Alignment explanation
Indices: 163082428--163082554 Score: 139
Period size: 54 Copynumber: 2.4 Consensus size: 53
163082418 GGGTATTTTA
* *
163082428 GTAATTTCACAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTACAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * * ****
163082481 ATAATTTTAAAAATCGAGGGTAAAACGGTAATTTTGTAAATCG-GGAGTAGTTTG
1 GTAATTTT-ACAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGG-GTAAAACG
163082535 GTAATTTTACAAGTCGAGGG
1 GTAATTTTACAA-TCGAGGG
163082555 CATTTCAGTA
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
53 11 0.18
54 49 0.82
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.29
Consensus pattern (53 bp):
GTAATTTTACAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:163087457 original size:27 final size:27
Alignment explanation
Indices: 163087427--163087523 Score: 110
Period size: 27 Copynumber: 3.6 Consensus size: 27
163087417 TTAGTTTACC
*
163087427 AAAATTACCGAAATACCTT-TAGTTTGT
1 AAAATTACCGAAATACCTTCGA-TTTGT
* *
163087454 AAAA-TACTGAAATACCCTCGATTTGT
1 AAAATTACCGAAATACCTTCGATTTGT
* *
163087480 AAAATTACTGAAATACCTTCGACTTGT
1 AAAATTACCGAAATACCTTCGATTTGT
163087507 AAAATTACC-AAAGTACC
1 AAAATTACCGAAA-TACC
163087524 CCGATTTACA
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
26 24 0.39
27 37 0.61
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
AAAATTACCGAAATACCTTCGATTTGT
Found at i:163087529 original size:53 final size:53
Alignment explanation
Indices: 163087427--163087530 Score: 124
Period size: 53 Copynumber: 2.0 Consensus size: 53
163087417 TTAGTTTACC
* * *
163087427 AAAATTACCGAAATACCTTTAGTTTGTAAAATACTGAAATACCCTCGATTTGT
1 AAAATTACCGAAATACCTTGAGCTTGTAAAATACTCAAATACCCTCGATTTGT
*
163087480 AAAATTACTGAAATACCTTCGA-CTTGTAAAATTAC-CAAAGTACCC-CGATTT
1 AAAATTACCGAAATACCTT-GAGCTTGTAAAA-TACTCAAA-TACCCTCGATTT
163087531 ACAGAATTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
53 35 0.80
54 9 0.20
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (53 bp):
AAAATTACCGAAATACCTTGAGCTTGTAAAATACTCAAATACCCTCGATTTGT
Found at i:163087565 original size:27 final size:26
Alignment explanation
Indices: 163087520--163087837 Score: 377
Period size: 27 Copynumber: 11.8 Consensus size: 26
163087510 ATTACCAAAG
163087520 TACCC-CGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
*
163087546 TACCCTCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
*
163087573 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
163087600 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTAC-GTTT
* *
163087627 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
*
163087654 TACCCTCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
* *
163087681 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
*
163087708 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTAC-GTTT
*
163087735 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
* * *
163087762 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-GTTT
* * * *
163087789 TTCTCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-GTTT
*
163087816 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
163087838 AGAAATACCC
Statistics
Matches: 254, Mismatches: 32, Indels: 11
0.86 0.11 0.04
Matches are distributed among these distances:
26 8 0.03
27 244 0.96
28 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (26 bp):
TACCCTCGATTTACAGAATTACGTTT
Found at i:163087637 original size:81 final size:81
Alignment explanation
Indices: 163087520--163087837 Score: 433
Period size: 81 Copynumber: 3.9 Consensus size: 81
163087510 ATTACCAAAG
*
163087520 TACCC-CGATTTACAGAATTA-TCGTTTTACCCTCGATTTACATAATTACCGTTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTACT-GTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGAT
163087583 TTACAAAATTACCGTTT
65 TTACAAAATTACCGTTT
* *
163087600 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
* **
163087665 TACAGAATTATTGTTT
66 TACAAAATTACCGTTT
* * * * *
163087681 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
*
163087746 TACAAAATTATCGTTT
66 TACAAAATTACCGTTT
* * * * * * **
163087762 TACCGTCGATTTATAGAATTACTATTTTTCTCTTGATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
163087827 TACAAAATTAC
66 TACAAAATTAC
163087838 AGAAATACCC
Statistics
Matches: 214, Mismatches: 22, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
80 5 0.02
81 208 0.97
82 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
TACAAAATTACCGTTT
Found at i:163087846 original size:27 final size:27
Alignment explanation
Indices: 163087816--163087901 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
163087806 ATTACTATTT
*
163087816 TACCCTCGATTTACAAAATTA-CAGAAA
1 TACCCTCAATTTACAAAATTACCA-AAA
**
163087843 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAA
* **
163087870 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTC-AATTTACAAAATTACCAAAA
163087897 TACCC
1 TACCC
163087902 ATGGTTTGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.02
27 50 0.94
28 2 0.04
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCAAAA
Found at i:163087864 original size:54 final size:54
Alignment explanation
Indices: 163087520--163087837 Score: 458
Period size: 54 Copynumber: 5.9 Consensus size: 54
163087510 ATTACCAAAG
* * * *
163087520 TACCC-CGATTTACAGAATTATCGTTTTACCCTCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
163087573 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* *
163087627 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* *
163087681 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * *
163087735 TACCCTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * * ** *
163087789 TTCTCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTAC
163087838 AGAAATACCC
Statistics
Matches: 240, Mismatches: 24, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
53 5 0.02
54 235 0.98
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:163087908 original size:27 final size:26
Alignment explanation
Indices: 163087830--163087974 Score: 130
Period size: 27 Copynumber: 5.4 Consensus size: 26
163087820 CTCGATTTAC
**
163087830 AAAATTA-CAGAAATACCCTCAATTTGT
1 AAAATTACCA-AAATACCC-CTGTTTGT
163087857 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCT-GTTTGT
* *
163087884 AAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACCAAAATACCCCT-GTTTGT
* **
163087911 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACCAAAATACCCCTGT-TTGT
* * **
163087938 AAAATTACTAAAATACCCTTGTGGGGT
1 AAAATTACCAAAATACCCCTGT-TTGT
163087965 AAAATTACCA
1 AAAATTACCA
163087975 TTTTGCCCCT
Statistics
Matches: 102, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
26 3 0.03
27 97 0.95
28 2 0.02
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.28
Consensus pattern (26 bp):
AAAATTACCAAAATACCCCTGTTTGT
Found at i:163088670 original size:27 final size:28
Alignment explanation
Indices: 163088593--163088661 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
163088583 GCGTAGATCA
*
163088593 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
163088621 CGAAATTACCCCTAAAGAGTAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
*
163088649 CGATA-TACCCCTA
1 CGAAATTACCCCTA
163088662 GGGTTTAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGTAAAATTAC
Found at i:163091780 original size:27 final size:27
Alignment explanation
Indices: 163091704--163091793 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
163091694 TTTAGTTTAC
* *
163091704 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
163091731 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
163091758 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
163091785 TAAAATTAC
1 TAAAATTAC
163091794 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:163091803 original size:54 final size:54
Alignment explanation
Indices: 163091704--163091810 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
163091694 TTTAGTTTAC
* * *
163091704 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
163091758 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
163091811 ACAGAATTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:163091818 original size:27 final size:27
Alignment explanation
Indices: 163091799--163092117 Score: 332
Period size: 27 Copynumber: 11.8 Consensus size: 27
163091789 ATTACCAAAG
*
163091799 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
*
163091826 TACCCCCGATTTACATAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
163091853 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
163091880 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
163091907 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* **
163091934 TACCCTCGATTTACAGAATTATTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
163091961 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
** *
163091988 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
163092015 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
** * **
163092042 TACCGTCGATTTATAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * ** **
163092069 TTCTCTTGATTTACAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
163092096 TACCCTCGATTTACAAAATTAC
1 TACCCCCGATTTACAGAATTAC
163092118 AGAAATACCC
Statistics
Matches: 252, Mismatches: 40, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 252 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCCCGATTTACAGAATTACCGTTT
Found at i:163091836 original size:81 final size:81
Alignment explanation
Indices: 163091745--163092035 Score: 206
Period size: 81 Copynumber: 3.6 Consensus size: 81
163091735 AATACTGAAA
* * * **
163091745 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
163091810 TACAGAATTA-TCGTTT
66 TACAGAATTACT-GTTT
* * * *** * **** *
163091826 TACCCCCGATTTACATAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
163091891 TACAGAATTACTGTTT
66 TACAGAATTACTGTTT
*** * * ****** *
163091907 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTATTGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
* * *
163091972 TATAAAATTACCGTTT
66 TACAGAATTACTGTTT
* * * * *** *
163091988 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTA
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTA
163092036 TCGTTTTACC
Statistics
Matches: 178, Mismatches: 31, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
81 177 0.99
82 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
TACAGAATTACTGTTT
Found at i:163092036 original size:81 final size:81
Alignment explanation
Indices: 163091799--163092116 Score: 429
Period size: 81 Copynumber: 3.9 Consensus size: 81
163091789 ATTACCAAAG
* * * *
163091799 TACCCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
*
163091864 TACAAAATTACCGTTT
66 TACAAAATTATCGTTT
* * *
163091880 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
* *
163091945 TACAGAATTATTGTTT
66 TACAAAATTATCGTTT
* * * *
163091961 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
163092026 TACAAAATTATCGTTT
66 TACAAAATTATCGTTT
* * ** * * * **
163092042 TACCGTCGATTTATAGAATTACTATTTTTCTCTTGATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
163092107 TACAAAATTA
66 TACAAAATTA
163092117 CAGAAATACC
Statistics
Matches: 212, Mismatches: 25, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 212 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
TACAAAATTATCGTTT
Found at i:163092126 original size:27 final size:27
Alignment explanation
Indices: 163092096--163092181 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
163092086 ATTACTATTT
*
163092096 TACCCTCGATTTACAAAATTA-CAGAAA
1 TACCCTCAATTTACAAAATTACCA-AAA
**
163092123 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAA
* **
163092150 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTC-AATTTACAAAATTACCAAAA
163092177 TACCC
1 TACCC
163092182 ATGGTTTGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.02
27 50 0.94
28 2 0.04
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCAAAA
Found at i:163092144 original size:54 final size:54
Alignment explanation
Indices: 163091799--163092117 Score: 449
Period size: 54 Copynumber: 5.9 Consensus size: 54
163091789 ATTACCAAAG
* * * * * *
163091799 TACCCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
163091853 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* *
163091907 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* *
163091961 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * *
163092015 TACCCTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * * ** *
163092069 TTCTCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTAC
163092118 AGAAATACCC
Statistics
Matches: 239, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 239 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:163092168 original size:54 final size:53
Alignment explanation
Indices: 163092110--163092236 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 53
163092100 CTCGATTTAC
* **
163092110 AAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGT-TTGT
1 AAAATTACAGAAATACCCT-AATTTGAAAAATTACCAAAATACCCCT-GTAGGGT
** *
163092164 AAAATTACCA-AAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTA-CAGAAATACCC-TAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
*
163092218 AAAATTACTGAAATACCCT
1 AAAATTACAGAAATACCCT
163092237 TGTGGGGTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
53 4 0.06
54 55 0.89
55 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACAGAAATACCCTAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
Found at i:163092188 original size:27 final size:27
Alignment explanation
Indices: 163092110--163092208 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
163092100 CTCGATTTAC
*
163092110 AAAATTA-CAGAAATACCC-TCAATTTGT
1 AAAATTACCA-AAATACCCAT-AGTTTGT
*
163092137 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCATAGTTTGT
* *
163092164 AAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACCAAAATACCCATAGTTTGT
*
163092191 AAAATTACTAAAATACCC
1 AAAATTACCAAAATACCC
163092209 CTGTAGGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 62 0.95
28 3 0.05
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCATAGTTTGT
Found at i:163092221 original size:27 final size:27
Alignment explanation
Indices: 163092135--163092254 Score: 109
Period size: 27 Copynumber: 4.4 Consensus size: 27
163092125 CCCTCAATTT
**
163092135 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* * **
163092162 GTAAAATTACCAAAATACCCATGGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* *
163092189 GAAAAATTACTAAAATACCCCT-GTAGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
** *
163092216 GTAAAATTACTGAAATA-CCCTTGTGGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
163092243 GTAAAATTACCA
1 GTAAAATTACCA
163092255 TTTTGCCCCT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.08
27 73 0.92
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTGG
Found at i:163092949 original size:27 final size:28
Alignment explanation
Indices: 163092872--163092940 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
163092862 GCGTAGATCA
*
163092872 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
163092900 CGAAATTACCCCTAAAGAGTAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
*
163092928 CGATA-TACCCCTA
1 CGAAATTACCCCTA
163092941 GGGTTTAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGTAAAATTAC
Found at i:163096059 original size:27 final size:27
Alignment explanation
Indices: 163095983--163096072 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
163095973 TTTAGTTTAC
* *
163095983 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
163096010 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
163096037 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
163096064 TAAAATTAC
1 TAAAATTAC
163096073 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:163096082 original size:54 final size:54
Alignment explanation
Indices: 163095983--163096089 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
163095973 TTTAGTTTAC
* * *
163095983 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
163096037 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
163096090 ACAGAATTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:163096097 original size:27 final size:27
Alignment explanation
Indices: 163096078--163096396 Score: 323
Period size: 27 Copynumber: 11.8 Consensus size: 27
163096068 ATTACCAAAG
*
163096078 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
*
163096105 TACCCCCGATTTACATAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
163096132 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
163096159 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
163096186 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* **
163096213 TACCCTCGATTTACAGAATTATTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
163096240 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
** **
163096267 TACCCTTGATTTACAGAATTATTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
163096294 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
** * **
163096321 TACCGTCGATTTATAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * ** **
163096348 TTCTCTTGATTTACAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
163096375 TACCCTCGATTTACAAAATTAC
1 TACCCCCGATTTACAGAATTAC
163096397 AGAAATACCC
Statistics
Matches: 252, Mismatches: 40, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 252 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCCCGATTTACAGAATTACCGTTT
Found at i:163096115 original size:81 final size:81
Alignment explanation
Indices: 163096024--163096233 Score: 206
Period size: 81 Copynumber: 2.6 Consensus size: 81
163096014 AATACTGAAA
* * * **
163096024 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
163096089 TACAGAATTA-TCGTTT
66 TACAGAATTACT-GTTT
* * * *** * **** *
163096105 TACCCCCGATTTACATAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
163096170 TACAGAATTACTGTTT
66 TACAGAATTACTGTTT
*** * *
163096186 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTA
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTA
163096234 TTGTTTTACC
Statistics
Matches: 107, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
81 106 0.99
82 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.10, T:0.36
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
TACAGAATTACTGTTT
Found at i:163096240 original size:81 final size:81
Alignment explanation
Indices: 163096078--163096395 Score: 422
Period size: 81 Copynumber: 3.9 Consensus size: 81
163096068 ATTACCAAAG
* * *
163096078 TACCCCCGATTTACAGAATTA-TCGTTTTACCCCCGATTTACATAATTACCGTTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTACT-GTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGAT
*
163096142 TTACAAAATTACCGTTT
65 TTACAAAATTATCGTTT
* *
163096159 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
* *
163096224 TACAGAATTATTGTTT
66 TACAAAATTATCGTTT
* * * * **
163096240 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTATTGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
163096305 TACAAAATTATCGTTT
66 TACAAAATTATCGTTT
* * * * * * **
163096321 TACCGTCGATTTATAGAATTACTATTTTTCTCTTGATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
163096386 TACAAAATTA
66 TACAAAATTA
163096396 CAGAAATACC
Statistics
Matches: 211, Mismatches: 25, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
81 210 1.00
82 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
TACAAAATTATCGTTT
Found at i:163096405 original size:27 final size:27
Alignment explanation
Indices: 163096375--163096460 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
163096365 ATTACTATTT
*
163096375 TACCCTCGATTTACAAAATTA-CAGAAA
1 TACCCTCAATTTACAAAATTACCA-AAA
**
163096402 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAA
* **
163096429 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTC-AATTTACAAAATTACCAAAA
163096456 TACCC
1 TACCC
163096461 ATGGTTTGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.02
27 50 0.94
28 2 0.04
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCAAAA
Found at i:163096423 original size:54 final size:54
Alignment explanation
Indices: 163096078--163096396 Score: 440
Period size: 54 Copynumber: 5.9 Consensus size: 54
163096068 ATTACCAAAG
* * * * * *
163096078 TACCCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
163096132 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* *
163096186 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * *
163096240 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * *
163096294 TACCCTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * * ** *
163096348 TTCTCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTAC
163096397 AGAAATACCC
Statistics
Matches: 239, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 239 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:163096447 original size:54 final size:53
Alignment explanation
Indices: 163096389--163096515 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 53
163096379 CTCGATTTAC
* **
163096389 AAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGT-TTGT
1 AAAATTACAGAAATACCCT-AATTTGAAAAATTACCAAAATACCCCT-GTAGGGT
** *
163096443 AAAATTACCA-AAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTA-CAGAAATACCC-TAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
*
163096497 AAAATTACTGAAATACCCT
1 AAAATTACAGAAATACCCT
163096516 TGTGGGGTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
53 4 0.06
54 55 0.89
55 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACAGAAATACCCTAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
Found at i:163096467 original size:27 final size:27
Alignment explanation
Indices: 163096389--163096487 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
163096379 CTCGATTTAC
*
163096389 AAAATTA-CAGAAATACCC-TCAATTTGT
1 AAAATTACCA-AAATACCCAT-AGTTTGT
*
163096416 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCATAGTTTGT
* *
163096443 AAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACCAAAATACCCATAGTTTGT
*
163096470 AAAATTACTAAAATACCC
1 AAAATTACCAAAATACCC
163096488 CTGTAGGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 62 0.95
28 3 0.05
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCATAGTTTGT
Found at i:163096500 original size:27 final size:27
Alignment explanation
Indices: 163096414--163096533 Score: 109
Period size: 27 Copynumber: 4.4 Consensus size: 27
163096404 CCCTCAATTT
**
163096414 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* * **
163096441 GTAAAATTACCAAAATACCCATGGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* *
163096468 GAAAAATTACTAAAATACCCCT-GTAGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
** *
163096495 GTAAAATTACTGAAATA-CCCTTGTGGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
163096522 GTAAAATTACCA
1 GTAAAATTACCA
163096534 TTTTGCCCCT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.08
27 73 0.92
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTGG
Found at i:163097229 original size:27 final size:28
Alignment explanation
Indices: 163097152--163097220 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
163097142 GCGTAGATCA
*
163097152 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
163097180 CGAAATTACCCCTAAAGAGTAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
*
163097208 CGATA-TACCCCTA
1 CGAAATTACCCCTA
163097221 GGGTTTAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGTAAAATTAC
Found at i:163100314 original size:27 final size:27
Alignment explanation
Indices: 163100238--163100327 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
163100228 TTTAGTTTAC
* *
163100238 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
163100265 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
163100292 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
163100319 TAAAATTAC
1 TAAAATTAC
163100328 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:163100337 original size:54 final size:54
Alignment explanation
Indices: 163100238--163100344 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
163100228 TTTAGTTTAC
* * *
163100238 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
163100292 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
163100345 ACAGAATTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:163100490 original size:79 final size:80
Alignment explanation
Indices: 163100333--163100642 Score: 341
Period size: 79 Copynumber: 3.9 Consensus size: 80
163100323 ATTACCAAAG
* * *
163100333 TACCCCCGATTTACAGAATTA-TCG---TACCCCCGATTTACATAATTACCGTTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTACT-GTTTTACCCTCGATTTACAGAATTACCG-TTTACCCTCGAT
*
163100394 TTACAAAATTACCGTTT
64 TTACAAAATTACTGTTT
* *
163100411 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCGTTTA-CCTCGATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTACCCTCGATTT
*
163100475 ACAGAATTACTGTTT
66 ACAAAATTACTGTTT
* * * * *
163100490 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTG-TTACCCTCGATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTACCCTCGATTT
163100554 AC-AAATTA-TCGTTT
66 ACAAAATTACT-GTTT
* * * * * * **
163100568 TACCGTCGATTTATAGAATTACTATTTTTCTCTTGATTTACAGAATTACTATTTTA-CCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTAC-CGTTTACCCTCGATT
163100632 TACAAAATTAC
65 TACAAAATTAC
163100643 AGAAATACCC
Statistics
Matches: 200, Mismatches: 22, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
77 1 0.00
78 76 0.38
79 89 0.44
80 13 0.06
81 21 0.10
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (80 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTACCCTCGATTT
ACAAAATTACTGTTT
Found at i:163100501 original size:106 final size:106
Alignment explanation
Indices: 163100363--163100670 Score: 381
Period size: 106 Copynumber: 2.9 Consensus size: 106
163100353 ATCGTACCCC
* *
163100363 CGATTTACATAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGA
1 CGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGA
163100428 ATTACTGTTTTACCCTCGATTTATAAAATTACCG-TTTACC-T
66 ATTACTG--TTACCCTCGATTTATAAAATTACCGTTTTACCGT
* *
163100469 CGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGA
1 CGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGA
* *
163100534 ATTACTGTTACCCTCGATTTA-CAAATTATCGTTTTACCGT
66 ATTACTGTTACCCTCGATTTATAAAATTACCGTTTTACCGT
* * * * * * ** *
163100574 CGATTTATAGAATTACTATTTTTCTCTTGATTTACAGAATTACTATTTTA-CCTCGATTTACAAA
1 CGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGA
* * * *
163100638 ATTACAGAAATACCCTCAATTTGTAAAATTACC
66 ATTACTG--TTACCCTCGATTTATAAAATTACC
163100671 AAAATACCCC
Statistics
Matches: 174, Mismatches: 23, Indels: 9
0.84 0.11 0.04
Matches are distributed among these distances:
103 8 0.05
104 38 0.22
105 42 0.24
106 79 0.45
107 7 0.04
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (106 bp):
CGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGA
ATTACTGTTACCCTCGATTTATAAAATTACCGTTTTACCGT
Found at i:163100595 original size:27 final size:27
Alignment explanation
Indices: 163100333--163100642 Score: 336
Period size: 27 Copynumber: 11.8 Consensus size: 27
163100323 ATTACCAAAG
*
163100333 TACCCCCGATTTACAGAATTA-TCG---
1 TACCCTCGATTTACAGAATTACT-GTTT
* * *
163100357 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
163100384 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
163100411 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
163100438 TACCCTCGATTTATAAAATTACCG-TT
1 TACCCTCGATTTACAGAATTACTGTTT
163100464 TA-CCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
163100490 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
163100517 TACCCTTGATTTACAGAATTACTG--T
1 TACCCTCGATTTACAGAATTACTGTTT
163100542 TACCCTCGATTTACA-AATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* * *
163100568 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * * *
163100595 TTCTCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
163100622 TA-CCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
163100643 AGAAATACCC
Statistics
Matches: 243, Mismatches: 32, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
23 1 0.00
24 27 0.11
25 33 0.14
26 38 0.16
27 143 0.59
28 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:163100665 original size:27 final size:27
Alignment explanation
Indices: 163100635--163100735 Score: 116
Period size: 27 Copynumber: 3.7 Consensus size: 27
163100625 CTCGATTTAC
163100635 AAAATTA-CAGAAATA-CCCTCAATTTGT
1 AAAATTACCA-AAATACCCCT-AATTTGT
*
163100662 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAATTTGT
* ** *
163100689 AAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACCAAAATACCCCTAATTTGT
*
163100716 AAAATTACTAAAATACCCCT
1 AAAATTACCAAAATACCCCT
163100736 GTAGGGTAAA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
27 60 0.91
28 6 0.09
ACGTcount: A:0.45, C:0.21, G:0.07, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAATTTGT
Found at i:163100696 original size:158 final size:158
Alignment explanation
Indices: 163100364--163100679 Score: 373
Period size: 158 Copynumber: 2.0 Consensus size: 158
163100354 TCGTACCCCC
* *
163100364 GATTTACATAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAA
1 GATTTACAGAATTA-C-TGTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAA
* * * * * ***
163100429 TTACTGTTTTACCCTCGATTTATAAAATTACCGTTTACCTCGATTTACAGAATTACTGTTTTACC
64 TTACTATTTTACCCTCGATTTACAAAATTACAGTTTACCTCGATTTACAAAATTACAGAAATACC
* **** *
163100494 CTCGATTTATAAAATTACCGTTTTACCCTT
129 CTCAATTTATAAAATTACCAAAATACCCTA
* * *
163100524 GATTTACAGAATTACTGTTACCCTCGATTTAC-AAATTATCGTTTTACCGTCGATTTATAGAATT
1 GATTTACAGAATTACTGTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATT
* * * * *
163100588 ACTATTTTTCTCTTGATTTACAGAATTACTATTTTACCTCGATTTACAAAATTACAGAAATACCC
66 ACTATTTTACCCTCGATTTACAAAATTAC-AGTTTACCTCGATTTACAAAATTACAGAAATACCC
*
163100653 TCAATTTGTAAAATTACCAAAATACCC
130 TCAATTTATAAAATTACCAAAATACCC
163100680 CTAGTTTGTA
Statistics
Matches: 131, Mismatches: 24, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
157 52 0.40
158 65 0.50
159 1 0.01
160 13 0.10
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.40
Consensus pattern (158 bp):
GATTTACAGAATTACTGTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATT
ACTATTTTACCCTCGATTTACAAAATTACAGTTTACCTCGATTTACAAAATTACAGAAATACCCT
CAATTTATAAAATTACCAAAATACCCTA
Found at i:163100703 original size:54 final size:53
Alignment explanation
Indices: 163100635--163100761 Score: 132
Period size: 54 Copynumber: 2.4 Consensus size: 53
163100625 CTCGATTTAC
* **
163100635 AAAATTA-CAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGT-TTGT
1 AAAATTACCA-AAATACCCT-AATTTGAAAAATTACCAAAATACCCCT-GTAGGGT
** *
163100689 AAAATTACCAAAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACCAAAATACCC-TAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
**
163100743 AAAATTACTGAAATACCCT
1 AAAATTACCAAAATACCCT
163100762 TGTGGGTAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
53 3 0.05
54 56 0.90
55 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
Found at i:163100746 original size:27 final size:27
Alignment explanation
Indices: 163100660--163100778 Score: 116
Period size: 27 Copynumber: 4.4 Consensus size: 27
163100650 CCCTCAATTT
**
163100660 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* * **
163100687 GTAAAATTACCAAAATACCCATGGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* *
163100714 GAAAAATTACTAAAATACCCCT-GTAGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
** *
163100741 GTAAAATTACTGAAATA-CCCTTGTGG
1 GTAAAATTACCAAAATACCCCTAGTGG
163100767 GTAAAATTACCA
1 GTAAAATTACCA
163100779 TTTTGCCCCT
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
26 18 0.23
27 61 0.77
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTGG
Found at i:163101423 original size:27 final size:28
Alignment explanation
Indices: 163101392--163101449 Score: 109
Period size: 27 Copynumber: 2.1 Consensus size: 28
163101382 GCGTAGATCA
163101392 CGAAATTACCCCTAAAGAGC-AAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
163101419 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
163101447 CGA
1 CGA
163101450 TATACCCTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 20 0.67
28 10 0.33
ACGTcount: A:0.45, C:0.26, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:163109599 original size:31 final size:31
Alignment explanation
Indices: 163109561--163109624 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
163109551 CCTTTTCATA
163109561 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
163109592 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
163109623 TT
1 TT
163109625 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:163109867 original size:24 final size:24
Alignment explanation
Indices: 163109816--163109958 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
163109806 GCTTTATCAT
*
163109816 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
163109841 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
163109865 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
163109888 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
163109912 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
163109936 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
163109959 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:163109895 original size:47 final size:48
Alignment explanation
Indices: 163109816--163109957 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
163109806 GCTTTATCAT
* *
163109816 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
163109865 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
163109912 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
163109958 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:163109916 original size:71 final size:72
Alignment explanation
Indices: 163109815--163109958 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
163109805 TGCTTTATCA
*
163109815 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
163109880 GCCCTTT
66 GCCCTTT
* * **
163109887 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
163109950 AGCCCTTT
65 AGCCCTTT
163109958 T
1 T
163109959 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:163110037 original size:11 final size:11
Alignment explanation
Indices: 163110007--163110060 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
163109997 TTTATGAATC
163110007 TCATGTGCATA
1 TCATGTGCATA
*
163110018 TCA--TACATA
1 TCATGTGCATA
163110027 TCATGTGCATA
1 TCATGTGCATA
*
163110038 TCA--TACAT-
1 TCATGTGCATA
163110046 TCATGTGCATA
1 TCATGTGCATA
163110057 TCAT
1 TCAT
163110061 ACATACCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 3 0.09
9 12 0.35
10 4 0.12
11 15 0.44
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:163110051 original size:19 final size:20
Alignment explanation
Indices: 163110007--163110065 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
163109997 TTTATGAATC
163110007 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
163110027 TCATGTGCATATCATACAT-
1 TCATGTGCATATCATACATA
163110046 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
163110066 CCATATTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:163110140 original size:25 final size:25
Alignment explanation
Indices: 163110108--163110155 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
163110098 ATACATAAAC
* * *
163110108 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
163110133 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
163110156 CATGTATAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:163116636 original size:31 final size:31
Alignment explanation
Indices: 163116598--163116661 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
163116588 CCTTTTCATA
163116598 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
163116629 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
163116660 TT
1 TT
163116662 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:163116904 original size:24 final size:24
Alignment explanation
Indices: 163116853--163116995 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
163116843 GCTTTATCAT
*
163116853 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
163116878 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
163116902 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
163116925 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
163116949 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
163116973 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
163116996 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:163116932 original size:47 final size:48
Alignment explanation
Indices: 163116853--163116994 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
163116843 GCTTTATCAT
* *
163116853 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
163116902 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
163116949 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
163116995 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:163116953 original size:71 final size:72
Alignment explanation
Indices: 163116852--163116995 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
163116842 TGCTTTATCA
*
163116852 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
163116917 GCCCTTT
66 GCCCTTT
* * **
163116924 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
163116987 AGCCCTTT
65 AGCCCTTT
163116995 T
1 T
163116996 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:163117069 original size:20 final size:20
Alignment explanation
Indices: 163117041--163117104 Score: 103
Period size: 20 Copynumber: 3.2 Consensus size: 20
163117031 GCATTTATGA
*
163117041 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
163117061 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
163117081 ACAT-TCATGTGCATCTCAT
1 ACATATCATGTGCATATCAT
163117100 ACATA
1 ACATA
163117105 CCATATTTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
19 18 0.44
20 23 0.56
ACGTcount: A:0.33, C:0.23, G:0.09, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:163117179 original size:25 final size:25
Alignment explanation
Indices: 163117147--163117194 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
163117137 ATACATAAAC
* * *
163117147 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
163117172 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
163117195 CATGTATAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:163121466 original size:43 final size:43
Alignment explanation
Indices: 163121342--163121490 Score: 153
Period size: 43 Copynumber: 3.5 Consensus size: 43
163121332 AGAAAGCTCG
* * *
163121342 TACAATGCCAACGTCCCAGACGTGGTCTTACATAT-AATCAAA
1 TACAATGCCAACATCCCAGACATGGTCTTACATGTAAATCAAA
* * * *
163121384 TATCGATGCC-ACTGTCCCAGACAGGGTCTTACACG-AAATCAAA
1 TA-CAATGCCAAC-ATCCCAGACATGGTCTTACATGTAAATCAAA
163121427 TACAATGCCAACATCCCAGACATGGTCTTACATGTAAATCATAA
1 TACAATGCCAACATCCCAGACATGGTCTTACATGTAAATCA-AA
* *
163121471 GT-CGATGCCAACATTCCAGA
1 -TACAATGCCAACATCCCAGA
163121491 TGTGGTATTA
Statistics
Matches: 89, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
42 29 0.33
43 41 0.46
44 18 0.20
45 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (43 bp):
TACAATGCCAACATCCCAGACATGGTCTTACATGTAAATCAAA
Found at i:163125570 original size:31 final size:31
Alignment explanation
Indices: 163125527--163125590 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
163125517 CCTTTTCATA
163125527 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
163125558 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
163125589 TT
1 TT
163125591 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:163125827 original size:23 final size:24
Alignment explanation
Indices: 163125796--163125946 Score: 254
Period size: 23 Copynumber: 6.4 Consensus size: 24
163125786 CTGGAGGCCT
163125796 AGCCTCTTTTAATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
163125820 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
163125844 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
163125867 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
163125891 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
163125915 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
163125938 AGCCCTTTT
1 AGCCCTTTT
163125947 TCACTTCCTC
Statistics
Matches: 122, Mismatches: 2, Indels: 6
0.94 0.02 0.05
Matches are distributed among these distances:
23 63 0.52
24 59 0.48
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:163125882 original size:47 final size:47
Alignment explanation
Indices: 163125803--163125945 Score: 245
Period size: 47 Copynumber: 3.1 Consensus size: 47
163125793 CCTAGCCTCT
163125803 TTTAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
163125849 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
163125896 TTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
163125943 TTT
1 TTT
163125946 TTCACTTCCT
Statistics
Matches: 92, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
46 19 0.21
47 51 0.55
48 22 0.24
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:163125907 original size:71 final size:70
Alignment explanation
Indices: 163125796--163125946 Score: 266
Period size: 71 Copynumber: 2.1 Consensus size: 70
163125786 CTGGAGGCCT
163125796 AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGG
1 AGCC-CTTTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGG
163125861 GGCATA
65 GGCATA
* *
163125867 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
1 AGCCCTTTTAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGG
163125932 GGCATA
65 GGCATA
163125938 AGCCCTTTT
1 AGCCCTTTT
163125947 TCACTTCCTC
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
70 17 0.22
71 60 0.78
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (70 bp):
AGCCCTTTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGG
GCATA
Found at i:163126019 original size:20 final size:20
Alignment explanation
Indices: 163125994--163126060 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
163125984 TTATGATTAC
163125994 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
163126014 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
163126034 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
163126054 ACCATGT
1 ATCATGT
163126061 ATTAAAATCA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:163126025 original size:11 final size:11
Alignment explanation
Indices: 163125994--163126049 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
163125984 TTATGATTAC
163125994 ATCATGTGCAT
1 ATCATGTGCAT
*
163126005 ATCA--TACAT
1 ATCATGTGCAT
163126014 ATCATGTGCAT
1 ATCATGTGCAT
*
163126025 ATCA--TACAT
1 ATCATGTGCAT
*
163126034 GTCATGTGCAT
1 ATCATGTGCAT
163126045 ATCAT
1 ATCAT
163126050 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:163126112 original size:25 final size:25
Alignment explanation
Indices: 163126080--163126127 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
163126070 ATACATAAAC
* * *
163126080 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
163126105 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
163126128 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:163133632 original size:31 final size:31
Alignment explanation
Indices: 163133589--163133652 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
163133579 CCTTTTCATA
163133589 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* ** *
163133620 TTTCATATTTCATATTACTGGGTCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
163133651 TT
1 TT
163133653 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:163133890 original size:23 final size:24
Alignment explanation
Indices: 163133859--163133985 Score: 215
Period size: 23 Copynumber: 5.4 Consensus size: 24
163133849 CTGGAGGCCT
163133859 AGCCTCTTTTAATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
163133883 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
163133907 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
163133930 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
163133954 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
163133977 AGCCCTTTT
1 AGCCCTTTT
163133986 CACTTCCTCC
Statistics
Matches: 98, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
23 63 0.64
24 35 0.36
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:163133945 original size:47 final size:47
Alignment explanation
Indices: 163133866--163133985 Score: 224
Period size: 47 Copynumber: 2.6 Consensus size: 47
163133856 CCTAGCCTCT
163133866 TTTAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
163133912 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
163133959 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
163133986 CACTTCCTCC
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
46 16 0.22
47 56 0.78
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:163134058 original size:20 final size:20
Alignment explanation
Indices: 163134033--163134099 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
163134023 TTATGATTAC
163134033 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
163134053 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
163134073 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
163134093 ACCATGT
1 ATCATGT
163134100 ATTAAAATCA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:163134064 original size:11 final size:11
Alignment explanation
Indices: 163134033--163134088 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
163134023 TTATGATTAC
163134033 ATCATGTGCAT
1 ATCATGTGCAT
*
163134044 ATCA--TACAT
1 ATCATGTGCAT
163134053 ATCATGTGCAT
1 ATCATGTGCAT
*
163134064 ATCA--TACAT
1 ATCATGTGCAT
*
163134073 GTCATGTGCAT
1 ATCATGTGCAT
163134084 ATCAT
1 ATCAT
163134089 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:163134151 original size:25 final size:25
Alignment explanation
Indices: 163134119--163134166 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
163134109 ATACATAAAC
* * *
163134119 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
163134144 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
163134167 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:163138780 original size:25 final size:25
Alignment explanation
Indices: 163138751--163138798 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
163138741 TTATAATATG
* * *
163138751 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
163138776 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
163138799 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:163138867 original size:20 final size:20
Alignment explanation
Indices: 163138842--163138900 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
163138832 TAAATATGGT
163138842 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
163138862 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
163138882 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
163138901 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:163138981 original size:23 final size:24
Alignment explanation
Indices: 163138951--163139045 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
163138941 GAGGAAGTGA
163138951 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
163138974 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
163138998 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
163139022 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
163139046 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:163139019 original size:47 final size:49
Alignment explanation
Indices: 163138952--163139045 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
163138942 AGGAAGTGAA
*
163138952 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
163138999 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
163139046 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:163139306 original size:31 final size:31
Alignment explanation
Indices: 163139259--163139373 Score: 133
Period size: 31 Copynumber: 3.5 Consensus size: 31
163139249 AGTATTATGA
163139259 AATATG-AACATGAAAAGGCTTCGGCCCAGT
1 AATATGAAACATGAAAAGGCTTCGGCCCAGT
*
163139289 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 AATATGAAACATGAAAAGGCTTCGGCCCAG-----T
163139325 GAAATATGAAACATGAAAAGGCTTCGGCCCAGT
1 --AATATGAAACATGAAAAGGCTTCGGCCCAGT
* *
163139358 ATTATGAAATATGAAA
1 AATATGAAACATGAAA
163139374 TACGAAAAGG
Statistics
Matches: 73, Mismatches: 4, Indels: 15
0.79 0.04 0.16
Matches are distributed among these distances:
30 6 0.08
31 36 0.49
33 1 0.01
36 1 0.01
38 29 0.40
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (31 bp):
AATATGAAACATGAAAAGGCTTCGGCCCAGT
Found at i:163139341 original size:38 final size:38
Alignment explanation
Indices: 163139289--163139396 Score: 180
Period size: 38 Copynumber: 2.8 Consensus size: 38
163139279 TCGGCCCAGT
163139289 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
163139327 AATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
* *
163139365 AATATGAAATACGAAAAGGGCTACGGCCCAGT
1 AATATGAAATATGAAAA-GGCTTCGGCCCAGT
163139397 GCATGATTGA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 52 0.80
39 13 0.20
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
Found at i:163139355 original size:69 final size:67
Alignment explanation
Indices: 163139236--163139373 Score: 249
Period size: 69 Copynumber: 2.0 Consensus size: 67
163139226 CGTTTACAGT
163139236 AAAGGCTTCGCCCAGTATTATGAAATATGAACATGAAAAGGCTTCGGCCCAGTAATATGAAATAT
1 AAAGGCTTCGCCCAGTATTATGAAATATGAACATGAAAAGGCTTCGGCCCAGTAATATGAAATAT
163139301 GA
66 GA
*
163139303 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTC-GCCCAGTATTATGAAATATG-AACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
163139368 ATGA
64 ATGA
163139372 AA
1 AA
163139374 TACGAAAAGG
Statistics
Matches: 68, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
67 9 0.13
68 20 0.29
69 39 0.57
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (67 bp):
AAAGGCTTCGCCCAGTATTATGAAATATGAACATGAAAAGGCTTCGGCCCAGTAATATGAAATAT
GA
Found at i:163147123 original size:25 final size:25
Alignment explanation
Indices: 163147094--163147141 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
163147084 TTATAATATG
* * *
163147094 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
163147119 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
163147142 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:163147210 original size:20 final size:20
Alignment explanation
Indices: 163147185--163147243 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
163147175 TAAATATGGT
163147185 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
163147205 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
163147225 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
163147244 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:163147346 original size:47 final size:49
Alignment explanation
Indices: 163147294--163147387 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
163147284 AGGAAGTGAA
*
163147294 AAAGGGCTTAT-GCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
163147341 AAAGGGCTTTGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTTGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
163147388 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTTGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:163147349 original size:24 final size:24
Alignment explanation
Indices: 163147293--163147387 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
163147283 GAGGAAGTGA
163147293 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
163147316 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
163147340 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
163147364 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
163147388 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:163149786 original size:41 final size:41
Alignment explanation
Indices: 163149741--163149858 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
163149731 TGAAAGATAA
163149741 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
163149782 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
163149812 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
163149853 ATGTAG
1 ATGTAG
163149859 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:163149797 original size:71 final size:71
Alignment explanation
Indices: 163149709--163149872 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
163149699 GAGATGTATC
163149709 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
163149774 AGGACA
66 AGGACA
163149780 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
163149845 AGGACA
66 AGGACA
163149851 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
163149873 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:163157325 original size:41 final size:41
Alignment explanation
Indices: 163157280--163157397 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
163157270 TGAAAGATAA
163157280 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
163157321 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
163157351 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
163157392 ATGTAG
1 ATGTAG
163157398 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:163157336 original size:71 final size:71
Alignment explanation
Indices: 163157248--163157411 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
163157238 GAGATGTATC
163157248 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
163157313 AGGACA
66 AGGACA
163157319 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
163157384 AGGACA
66 AGGACA
163157390 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
163157412 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:163159104 original size:12 final size:12
Alignment explanation
Indices: 163159087--163159111 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
163159077 TGGTTTGGAA
163159087 GAGATCTAGAAG
1 GAGATCTAGAAG
163159099 GAGATCTAGAAG
1 GAGATCTAGAAG
163159111 G
1 G
163159112 CGGTTATGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.36, T:0.16
Consensus pattern (12 bp):
GAGATCTAGAAG
Found at i:163159301 original size:40 final size:39
Alignment explanation
Indices: 163159257--163159395 Score: 152
Period size: 40 Copynumber: 3.5 Consensus size: 39
163159247 GAAATTATAA
* * * *
163159257 CCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGTGATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGC-AGTCGTGATAT
* **
163159297 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGC-AGTCGTGATAT
* *
163159337 CCGGGCTAAGACCCGAAGGCATTTGTGCAATCGTGATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAGTCGTGATAT
* * *
163159376 CCGGGTTAAGTCCCGTAGGC
1 CCGGGCTAAGACCCGAAGGC
163159396 CTTGGTGCGG
Statistics
Matches: 83, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
39 24 0.29
40 59 0.71
ACGTcount: A:0.23, C:0.24, G:0.31, T:0.22
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCAGTCGTGATAT
Found at i:163159417 original size:79 final size:80
Alignment explanation
Indices: 163159257--163159423 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 80
163159247 GAAATTATAA
* * *
163159257 CCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGTGATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATGGTGCTAATCGTGATATCCGGGCTAAGACCCGAAGGCATTCG
*
163159322 TGCGAGTCATTCTAT
66 TGCGAGTCATCCTAT
* * * * * * *
163159337 CCGGGCTAAGACCCGAAGGCATTTGTGC-AATCGTGATATCCGGGTTAAGTCCCGTAGGCCTTGG
1 CCGGGCTAAGACCCGAAGGCAATGGTGCTAATCGTGATATCCGGGCTAAGACCCGAAGGCATTCG
* *
163159401 TGCGGGTTA-CCATAT
66 TGCGAGTCATCC-TAT
163159416 CCGGGCTA
1 CCGGGCTA
163159424 TGTCCGAAGG
Statistics
Matches: 73, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
78 1 0.01
79 47 0.64
80 25 0.34
ACGTcount: A:0.22, C:0.24, G:0.31, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATGGTGCTAATCGTGATATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATCCTAT
Found at i:163162806 original size:40 final size:40
Alignment explanation
Indices: 163162751--163162967 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
163162741 CGGATGATAA
* *
163162751 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
163162791 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
163162831 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
163162871 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
163162911 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
163162950 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
163162968 TACTTGGCTT
Statistics
Matches: 158, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
38 15 0.09
39 15 0.09
40 128 0.81
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:163165210 original size:12 final size:13
Alignment explanation
Indices: 163165188--163165219 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
163165178 TTTGTTAAGT
163165188 AATTATTATTTAA
1 AATTATTATTTAA
163165201 AATT-TTATTTAA
1 AATTATTATTTAA
163165213 AA-TATTA
1 AATTATTA
163165220 GTATTTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 1 0.06
12 13 0.72
13 4 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
AATTATTATTTAA
Found at i:163167241 original size:33 final size:33
Alignment explanation
Indices: 163167199--163167268 Score: 106
Period size: 33 Copynumber: 2.1 Consensus size: 33
163167189 CACACGCCCA
163167199 TGTGCTTTGGGACACGC-CAGTGTCCCCTACCCG
1 TGTGCTTTGGGACACGCACA-TGTCCCCTACCCG
* *
163167232 TGTGCTTTGGGACACTCACATGTCCCCTACCTG
1 TGTGCTTTGGGACACGCACATGTCCCCTACCCG
163167265 TGTG
1 TGTG
163167269 GAATGAATAG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 32 0.94
34 2 0.06
ACGTcount: A:0.13, C:0.33, G:0.26, T:0.29
Consensus pattern (33 bp):
TGTGCTTTGGGACACGCACATGTCCCCTACCCG
Found at i:163168864 original size:27 final size:27
Alignment explanation
Indices: 163168834--163168915 Score: 105
Period size: 27 Copynumber: 3.1 Consensus size: 27
163168824 ATCTCATATC
* *
163168834 TGTAGGCTAGTATTACTGAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCT
*
163168861 TGTAGGGTAGAATTACTGAAATGTCCC-
1 TGTAGGGTAGAATTACTGAAAT-ACCCT
*
163168888 TGTAGGGTAGAATTATTG-AATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCT
163168914 TG
1 TG
163168916 GTTTACAAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
25 3 0.06
26 5 0.10
27 37 0.77
28 3 0.06
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (27 bp):
TGTAGGGTAGAATTACTGAAATACCCT
Found at i:163168933 original size:26 final size:26
Alignment explanation
Indices: 163168898--163168955 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
163168888 TGTAGGGTAG
*
163168898 AATTATTGAATACCCTTGGTTTACAA
1 AATTACTGAATACCCTTGGTTTACAA
163168924 AATTACTGAATACCCTTGGTTTACAA
1 AATTACTGAATACCCTTGGTTTACAA
163168950 AATTAC
1 AATTAC
163168956 CAAAATACCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.36
Consensus pattern (26 bp):
AATTACTGAATACCCTTGGTTTACAA
Found at i:163168978 original size:27 final size:27
Alignment explanation
Indices: 163168948--163169291 Score: 198
Period size: 27 Copynumber: 12.7 Consensus size: 27
163168938 CTTGGTTTAC
* *
163168948 AAAATTACCAAAATACCCTCGATTAGA
1 AAAATTACCAAAATACCCTCGATTTGT
*
163168975 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTGT
* * *
163169002 AAAATTATCACAATA-CCTCTAATTTGT
1 AAAATTACCAAAATACCCTC-GATTTGT
* * * *
163169029 GAAATTATCGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
* *** * **
163169056 AAATTTATTGAAATACCATCGATTCAT
1 AAAATTACCAAAATACCCTCGATTTGT
* *
163169083 AAAATTACCAAAATACCCTTGATTTGG
1 AAAATTACCAAAATACCCTCGATTTGT
* *
163169110 AAAATTACCAAAATACCCTTGATTTGG
1 AAAATTACCAAAATACCCTCGATTTGT
**
163169137 AAAATTACCAAAATACCCTTAATTTAG-
1 AAAATTACCAAAATACCCTCGATTT-GT
* * **
163169164 AAAATTA-TAGAAATACCC-CTAATTTAC
1 AAAATTACCA-AAATACCCTC-GATTTGT
* **
163169191 AAAATTA-CAGAAATACCCTTGACTTTCA
1 AAAATTACCA-AAATACCCTCGA-TTTGT
* * * *
163169219 AAAATTA-CAGAAATACCATTGGTTTGC
1 AAAATTACCA-AAATACCCTCGATTTGT
* * * *
163169246 AAAATTATCGAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
* * *
163169273 AGATTTACCAAAACACCCT
1 AAAATTACCAAAATACCCT
163169292 TGTAGGGCAA
Statistics
Matches: 258, Mismatches: 48, Indels: 22
0.79 0.15 0.07
Matches are distributed among these distances:
26 5 0.02
27 223 0.86
28 30 0.12
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTGT
Found at i:163169151 original size:81 final size:81
Alignment explanation
Indices: 163168932--163169293 Score: 257
Period size: 81 Copynumber: 4.5 Consensus size: 81
163168922 AAAATTACTG
* * * * * *
163168932 AATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTAGAAAAATTACCAAAATACC-CCTA
1 AATACCCTTGATTTGCAAAATTACCAAAATACCCTTGATTTGAAAAATTACCAAAATACCATCGA
* *
163168996 GTTTGTAAAATTATCAC
66 -TTTATAAAATTATCAA
* ** * * * * * * ***
163169013 AATA-CCTCTAATTTGTGAAATTATCGAAATACCCTCGACTTGTAAATTTATTGAAATACCATCG
1 AATACCCT-TGATTTGCAAAATTACCAAAATACCCTTGATTTGAAAAATTACCAAAATACCATCG
* *
163169077 ATTCATAAAATTACCAA
65 ATTTATAAAATTATCAA
* * * **
163169094 AATACCCTTGATTTGGAAAATTACCAAAATACCCTTGATTTGGAAAATTACCAAAATACCCTTAA
1 AATACCCTTGATTTGCAAAATTACCAAAATACCCTTGATTTGAAAAATTACCAAAATACCATCGA
*
163169159 TTTAGAAAATTAT-AGA
66 TTTATAAAATTATCA-A
* * * *
163169175 AATACCCCTAATTTACAAAATTA-CAGAAATACCCTTGACTTTCAAAAATTA-CAGAAATACCAT
1 AATACCCTTGATTTGCAAAATTACCA-AAATACCCTTGA-TTTGAAAAATTACCA-AAATACCAT
* * ** *
163169238 TGGTTTGCAAAATTATCGA
63 CGATTTATAAAATTATCAA
* * * * *
163169257 AATACCCTTGGTTTGTAGATTTACCAAAACACCCTTG
1 AATACCCTTGATTTGCAAAATTACCAAAATACCCTTG
163169294 TAGGGCAAAA
Statistics
Matches: 214, Mismatches: 58, Indels: 17
0.74 0.20 0.06
Matches are distributed among these distances:
80 6 0.03
81 144 0.67
82 62 0.29
83 2 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATACCCTTGATTTGCAAAATTACCAAAATACCCTTGATTTGAAAAATTACCAAAATACCATCGA
TTTATAAAATTATCAA
Found at i:163169249 original size:55 final size:53
Alignment explanation
Indices: 163168906--163169266 Score: 216
Period size: 54 Copynumber: 6.7 Consensus size: 53
163168896 AGAATTATTG
* * ** *
163168906 AATACCCTTGGTTTACAAAATTA-CTGAATACCCTTGGTTTACAAAATTACCA-A
1 AATACCCTTGATTTGCAAAATTACCAAAATACCCTTGATTTA-AAAATTA-CAGA
* * * * * *
163168959 AATACCCTCGATTAGAAAAATTACCAAAATACCCCT-AGTTTGTAAAATTATCA-C
1 AATACCCTTGATTTGCAAAATTACCAAAATACCCTTGA-TTT-AAAAATTA-CAGA
* ** * * * * **
163169013 AATA-CCTCTAATTTGTGAAATTATCGAAATACCCTCGACTTGT-AAATTTATTGA
1 AATACCCT-TGATTTGCAAAATTACCAAAATACCCTTGA-TT-TAAAAATTACAGA
* * *** *
163169067 AATACCATCGATTCATAAAATTACCAAAATACCCTTGATTTGGAAAATTACCA-A
1 AATACCCTTGATTTGCAAAATTACCAAAATACCCTTGATTT-AAAAATTA-CAGA
* * *
163169121 AATACCCTTGATTTGGAAAATTACCAAAATACCCTTAATTTAGAAAATTATAGA
1 AATACCCTTGATTTGCAAAATTACCAAAATACCCTTGATTTA-AAAATTACAGA
* * *
163169175 AATACCCCTAATTTACAAAATTA-CAGAAATACCCTTGACTTTCAAAAATTACAGA
1 AATACCCTTGATTTGCAAAATTACCA-AAATACCCTTGA-TTT-AAAAATTACAGA
* * * *
163169230 AATACCATTGGTTTGCAAAATTATCGAAATACCCTTG
1 AATACCCTTGATTTGCAAAATTACCAAAATACCCTTG
163169267 GTTTGTAGAT
Statistics
Matches: 233, Mismatches: 58, Indels: 32
0.72 0.18 0.10
Matches are distributed among these distances:
52 1 0.00
53 26 0.11
54 156 0.67
55 47 0.20
56 3 0.01
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (53 bp):
AATACCCTTGATTTGCAAAATTACCAAAATACCCTTGATTTAAAAATTACAGA
Found at i:163169576 original size:41 final size:41
Alignment explanation
Indices: 163169531--163169653 Score: 201
Period size: 41 Copynumber: 3.0 Consensus size: 41
163169521 GGAGGAAAAA
163169531 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
163169572 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* * * * *
163169613 ATTAAGGATTGTAGGGTTGCTTGACGATCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
163169654 GTGGCTTTTA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 77 1.00
ACGTcount: A:0.20, C:0.22, G:0.32, T:0.26
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:163169847 original size:22 final size:22
Alignment explanation
Indices: 163169795--163169859 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
163169785 GCAAATTATT
*
163169795 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTTTGTGCCAAC
*
163169817 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
163169839 CTGATTATGG-TTGTGTGCCAA
1 CTGATTATGGCTT-TGTGCCAA
163169860 ACGTATTTGC
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
21 3 0.08
22 33 0.89
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:163170089 original size:22 final size:22
Alignment explanation
Indices: 163170064--163170115 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
163170054 TGCTGCGATG
163170064 TTTACGGCTATGTGCTATCCTA
1 TTTACGGCTATGTGCTATCCTA
* * *
163170086 TTTATGGCTATGTGCTGTCCTG
1 TTTACGGCTATGTGCTATCCTA
*
163170108 TCTACGGC
1 TTTACGGC
163170116 GTTGAGCCGT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.23, T:0.40
Consensus pattern (22 bp):
TTTACGGCTATGTGCTATCCTA
Found at i:163176113 original size:18 final size:18
Alignment explanation
Indices: 163176090--163176128 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
163176080 GGGCTAACCA
163176090 ATCCATGCCAAGGATTAC
1 ATCCATGCCAAGGATTAC
*
163176108 ATCCATGCCAAGTATTAC
1 ATCCATGCCAAGGATTAC
163176126 ATC
1 ATC
163176129 AAACTCATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (18 bp):
ATCCATGCCAAGGATTAC
Found at i:163182635 original size:40 final size:40
Alignment explanation
Indices: 163182590--163182756 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
163182580 CGGAATATAA
163182590 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
163182630 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
163182670 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
163182710 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
163182749 CCGGATAT
1 CCGGATAT
163182757 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:163182740 original size:80 final size:79
Alignment explanation
Indices: 163182606--163182756 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
163182596 ATAATCACGT
*
163182606 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
163182671 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
163182686 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
163182749 CCGGATAT
64 CCGGATAT
163182757 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:163190632 original size:40 final size:40
Alignment explanation
Indices: 163190587--163190753 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
163190577 CGGAATATAA
163190587 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
163190627 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
163190667 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
163190707 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
163190746 CCGGATAT
1 CCGGATAT
163190754 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:163190737 original size:80 final size:79
Alignment explanation
Indices: 163190603--163190753 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
163190593 ATAATCACGT
*
163190603 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
163190668 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
163190683 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
163190746 CCGGATAT
64 CCGGATAT
163190754 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:163195729 original size:13 final size:13
Alignment explanation
Indices: 163195711--163195735 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
163195701 AATTGATATC
163195711 TGTGAAAATTTTG
1 TGTGAAAATTTTG
163195724 TGTGAAAATTTT
1 TGTGAAAATTTT
163195736 ATTGTTTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
TGTGAAAATTTTG
Found at i:163199052 original size:40 final size:40
Alignment explanation
Indices: 163198997--163199206 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
163198987 AACATTGGAA
163198997 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
163199037 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
163199077 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
163199117 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
163199156 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
163199197 CTATATCCGG
1 ATATATCCGG
163199207 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:163207188 original size:40 final size:40
Alignment explanation
Indices: 163207133--163207342 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
163207123 AACATTGGAA
163207133 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
163207173 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
163207213 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
163207253 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
163207292 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
163207333 CTATATCCGG
1 ATATATCCGG
163207343 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Done.