Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 526 of 770
Found at i:163209360 original size:40 final size:40
Alignment explanation
Indices: 163209304--163209471 Score: 184
Period size: 40 Copynumber: 4.2 Consensus size: 40
163209294 CAATTGAATG
* *
163209304 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
163209345 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
163209384 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
163209424 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
163209464 ATATCCGG
1 ATATCCGG
163209472 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:163209437 original size:80 final size:79
Alignment explanation
Indices: 163209304--163209471 Score: 239
Period size: 80 Copynumber: 2.1 Consensus size: 79
163209294 CAATTGAATG
* *
163209304 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
163209369 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
163209384 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
163209448 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
163209464 ATATCCGG
1 ATATCCGG
163209472 TTGTATTCCG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 2 0.03
80 76 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:163217359 original size:40 final size:40
Alignment explanation
Indices: 163217303--163217470 Score: 184
Period size: 40 Copynumber: 4.2 Consensus size: 40
163217293 CAATTGAATG
* *
163217303 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
163217344 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
163217383 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
163217423 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
163217463 ATATCCGG
1 ATATCCGG
163217471 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:163217436 original size:80 final size:79
Alignment explanation
Indices: 163217303--163217470 Score: 239
Period size: 80 Copynumber: 2.1 Consensus size: 79
163217293 CAATTGAATG
* *
163217303 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
163217368 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
163217383 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
163217447 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
163217463 ATATCCGG
1 ATATCCGG
163217471 TTGTATTCCG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 2 0.03
80 76 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:163219866 original size:27 final size:26
Alignment explanation
Indices: 163219835--163219886 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
163219825 AGTCATACAT
*
163219835 CTCATAAGGGCATAATAGTCACTTTAC
1 CTCATAAGGGCATAACAGTCA-TTTAC
*
163219862 CTCATAGGGGCATAACAGTCATTTA
1 CTCATAAGGGCATAACAGTCATTTA
163219887 TCAATTTGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
CTCATAAGGGCATAACAGTCATTTAC
Found at i:163223110 original size:17 final size:19
Alignment explanation
Indices: 163223078--163223115 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
163223068 AAACCTTCAA
163223078 TTTTCTCTTTTCTTCTTTC
1 TTTTCTCTTTTCTTCTTTC
163223097 TTTTCTC-TTT-TTCTTTC
1 TTTTCTCTTTTCTTCTTTC
163223114 TT
1 TT
163223116 CCTTCCCCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.47
18 3 0.16
19 7 0.37
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTCTCTTTTCTTCTTTC
Found at i:163243601 original size:40 final size:40
Alignment explanation
Indices: 163243514--163243717 Score: 174
Period size: 40 Copynumber: 5.1 Consensus size: 40
163243504 TGAATGATAC
* ** *
163243514 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTAATTATAC
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTTGTTATAT
* * * *
163243554 CCAGGCTAAGTCCCGAAGGCATTTATGCTAGTTGGTAAAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTTGTTATAT
** *
163243594 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTTGTTATAT
* * * * **** *
163243634 CCGGGCCAAGACCCGAAGGCAATTGTGCAAGTCACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTTGTTATAT
* * * * * *
163243674 CCGGGTTAAGACCCAAAGGCAATTGTGCTTGTAGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTTGTTATAT
163243714 CCGG
1 CCGG
163243718 TTGAATCCCG
Statistics
Matches: 132, Mismatches: 32, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 132 1.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCTAGTTGTTATAT
Found at i:163243649 original size:80 final size:79
Alignment explanation
Indices: 163243514--163243717 Score: 210
Period size: 80 Copynumber: 2.5 Consensus size: 79
163243504 TGAATGATAC
* * * * * * * *
163243514 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTAATTATACCCAGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCA-TTGTGCTAGTAGTTATATCCGGGCCAAGACCCGAAGGCAATTA
* ****
163243579 TGCTAGTTGGTAAAT
65 TGCAAGTCACCAAAT
* * *
163243594 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCCAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCATT-GTGCTAGTAGTTATATCCGGGCCAAGACCCGAAGGCAATTA
163243659 TGCAAGTCACCAAAT
65 TGCAAGTCACCAAAT
* * *
163243674 CCGGGTTAAGACCCAAAGGCAATTGTGCTTGTAGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCTAGTAGTTATATCCGG
163243718 TTGAATCCCG
Statistics
Matches: 101, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
79 2 0.02
80 96 0.95
81 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCTAGTAGTTATATCCGGGCCAAGACCCGAAGGCAATTAT
GCAAGTCACCAAAT
Found at i:163245738 original size:9 final size:9
Alignment explanation
Indices: 163245724--163246016 Score: 306
Period size: 9 Copynumber: 33.7 Consensus size: 9
163245714 TAACTCTAAT
163245724 TAAGTTATG
1 TAAGTTATG
163245733 TAAGTTATG
1 TAAGTTATG
*
163245742 -ATA-TTATA
1 TA-AGTTATG
*
163245750 TATATTTATG
1 TA-AGTTATG
163245760 T-A-TTATG
1 TAAGTTATG
163245767 TAAGTTATG
1 TAAGTTATG
*
163245776 TAAATTATG
1 TAAGTTATG
163245785 TAAGTTCA-G
1 TAAGTT-ATG
*
163245794 TAAGTTATT
1 TAAGTTATG
*
163245803 TGAGTTATG
1 TAAGTTATG
*
163245812 TGAGTTATG
1 TAAGTTATG
163245821 TAAGTTATG
1 TAAGTTATG
*
163245830 TAA---ATA
1 TAAGTTATG
163245836 TAAGTTATG
1 TAAGTTATG
163245845 TAAGTTATG
1 TAAGTTATG
*
163245854 TGAGTTATG
1 TAAGTTATG
*
163245863 CAAGTTATG
1 TAAGTTATG
*
163245872 TAAGTTATA
1 TAAGTTATG
163245881 TAAGTTATG
1 TAAGTTATG
163245890 TAAGTTATG
1 TAAGTTATG
*
163245899 TGAGTTATG
1 TAAGTTATG
163245908 T-A---A-G
1 TAAGTTATG
163245912 TAAGTTATG
1 TAAGTTATG
*
163245921 TGAGTTATG
1 TAAGTTATG
163245930 TAAGTTATG
1 TAAGTTATG
*
163245939 TAAGTTATA
1 TAAGTTATG
163245948 TAAGTTATG
1 TAAGTTATG
*
163245957 TATGTTATG
1 TAAGTTATG
*
163245966 TGAGTTATG
1 TAAGTTATG
**
163245975 TGTGTTATG
1 TAAGTTATG
163245984 TAAGTTATG
1 TAAGTTATG
163245993 TAAGTTATG
1 TAAGTTATG
*
163246002 TGAGTTATG
1 TAAGTTATG
163246011 TAAGTT
1 TAAGTT
163246017 CAAGTATATA
Statistics
Matches: 240, Mismatches: 29, Indels: 30
0.80 0.10 0.10
Matches are distributed among these distances:
4 2 0.01
5 2 0.01
6 5 0.02
7 6 0.03
8 10 0.04
9 209 0.87
10 6 0.03
ACGTcount: A:0.32, C:0.01, G:0.22, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:163246323 original size:29 final size:29
Alignment explanation
Indices: 163246285--163246412 Score: 107
Period size: 29 Copynumber: 4.3 Consensus size: 29
163246275 ATCACATGAA
*
163246285 AAAAATTTATTTTAATTAAATAATATTTAT
1 AAAAA-TTATATTAATTAAATAATATTTAT
*
163246315 AAAAATTATATTAATTTAATAATATTTAT
1 AAAAATTATATTAATTAAATAATATTTAT
* * * * *
163246344 ATAAATTA-ATCCAAATTATATTATTAATTAAT
1 AAAAATTATAT--TAATTA-AATAAT-ATTTAT
**
163246376 CCAAATTATATTAATTAAATAATATTTA-
1 AAAAATTATATTAATTAAATAATATTTAT
163246404 AATAAATTA
1 AA-AAATTA
163246413 ATCCAAATTA
Statistics
Matches: 76, Mismatches: 16, Indels: 13
0.72 0.15 0.12
Matches are distributed among these distances:
28 2 0.03
29 39 0.51
30 13 0.17
31 9 0.12
32 11 0.14
33 2 0.03
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (29 bp):
AAAAATTATATTAATTAAATAATATTTAT
Found at i:163246362 original size:19 final size:19
Alignment explanation
Indices: 163246340--163246432 Score: 91
Period size: 19 Copynumber: 4.7 Consensus size: 19
163246330 TTAATAATAT
163246340 TTATATAAATTAATCCAAA
1 TTATATAAATTAATCCAAA
163246359 TTATATTATTAATTAATCCAAA
1 TTATA-TA--AATTAATCCAAA
*
163246381 TTATATTAATTAAAT--AATA
1 TTATATAAATT-AATCCAA-A
*
163246400 TTTAAATAAATTAATCCAAA
1 -TTATATAAATTAATCCAAA
*
163246420 TTATATTAATTAA
1 TTATATAAATTAA
163246433 AATAAAATTG
Statistics
Matches: 61, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
18 2 0.03
19 24 0.39
20 15 0.25
21 3 0.05
22 17 0.28
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (19 bp):
TTATATAAATTAATCCAAA
Found at i:163246375 original size:22 final size:23
Alignment explanation
Indices: 163246347--163246432 Score: 98
Period size: 22 Copynumber: 4.1 Consensus size: 23
163246337 TATTTATATA
163246347 AATTAATCCAAATTATATT-ATT
1 AATTAATCCAAATTATATTAATT
163246369 AATTAATCCAAATTATATTAATT
1 AATTAATCCAAATTATATTAATT
* *
163246392 AAATAAT----ATT-TA--AATA
1 AATTAATCCAAATTATATTAATT
163246408 AATTAATCCAAATTATATTAATT
1 AATTAATCCAAATTATATTAATT
163246431 AA
1 AA
163246433 AATAAAATTG
Statistics
Matches: 52, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
16 9 0.17
18 2 0.04
19 3 0.06
20 3 0.06
21 2 0.04
22 19 0.37
23 14 0.27
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (23 bp):
AATTAATCCAAATTATATTAATT
Found at i:163246387 original size:61 final size:62
Alignment explanation
Indices: 163246317--163246432 Score: 207
Period size: 61 Copynumber: 1.9 Consensus size: 62
163246307 ATATTTATAA
* *
163246317 AAATTATATTAATTTAATAATATTTATATAAATTAATCCAAATTATATT-ATTAATTAATCC
1 AAATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATTAATTAATTAATCC
163246378 AAATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATTAATTAA
1 AAATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATTAATTAA
163246433 AATAAAATTG
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
61 47 0.90
62 5 0.10
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (62 bp):
AAATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATTAATTAATTAATCC
Found at i:163247267 original size:2 final size:2
Alignment explanation
Indices: 163247260--163247293 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
163247250 ACGAAAGATA
163247260 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
163247294 TTATTGTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:163247417 original size:11 final size:11
Alignment explanation
Indices: 163247384--163247417 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
163247374 AAATATTAGA
*
163247384 AAATTATTTTT
1 AAATTATATTT
163247395 AAATTATAATTT
1 AAATTAT-ATTT
163247407 AAATTATATTT
1 AAATTATATTT
163247418 GATGTTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
AAATTATATTT
Found at i:163251109 original size:28 final size:29
Alignment explanation
Indices: 163251042--163251142 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
163251032 ATAGTGAATC
*
163251042 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
163251071 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
163251099 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
163251129 CGCACACTTAGTGC
1 CGCACACTTAGTGC
163251143 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:163258920 original size:28 final size:29
Alignment explanation
Indices: 163258853--163258953 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
163258843 ATAGTGAATC
*
163258853 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
163258882 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
163258910 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
163258940 CGCACACTTAGTGC
1 CGCACACTTAGTGC
163258954 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:163260663 original size:37 final size:37
Alignment explanation
Indices: 163260596--163260707 Score: 163
Period size: 37 Copynumber: 3.0 Consensus size: 37
163260586 CTTTAGCTCG
* *
163260596 AATAGTCTCCACACGTAGTTATCGGGTCTTACCCGGA
1 AATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
* **
163260633 CAA-AATCTCAACACGTAGTCATCGTTTCTTACCCGGA
1 -AATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
163260670 AATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
163260707 A
1 A
163260708 TATATTTCCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
36 2 0.03
37 61 0.94
38 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.26
Consensus pattern (37 bp):
AATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
Found at i:163260905 original size:48 final size:48
Alignment explanation
Indices: 163260847--163261222 Score: 646
Period size: 48 Copynumber: 7.8 Consensus size: 48
163260837 ATATACACAC
*
163260847 ATCTCCTACATATTTCACACTAGCCATTCGAG-TTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCG-GCTTTACCACATATACAT
*
163260895 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
163260943 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
163260991 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
**
163261039 ATCTCATACATATTTCACTTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
163261087 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
163261135 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
163261183 ATCTCATATATATTTCACACTAGCCATTCGCCTTTACCAC
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
163261223 GCACATGTAT
Statistics
Matches: 314, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
48 314 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:163267878 original size:188 final size:187
Alignment explanation
Indices: 163267522--163267889 Score: 420
Period size: 188 Copynumber: 2.0 Consensus size: 187
163267512 AAGGCTATAA
* * * **
163267522 AACGACGCAGTTTCTGCAATCTATTAATAGATTTTTGTGGCGTTTCTAGCGAAAACGCCGGTATT
1 AACGACGCAGTTTCTGCAATCTACTAATAGATGTTTGTGGCGTTTCTAGCGAAAACGCCAGTAAA
* ** * *
163267587 TCACATCTTTTGTGGCCTTTATAAAAGCGCCACTAATAAAAGGCTATAAAACGATGACGTTTTGA
66 TCACACCTTTTGCAGCCTTTATAAAAGCGCCACTAATAAAAGGATATAAAACGACGACGTTTTGA
163267652 AATCTCTTTAGATGTTTTGTGACATTTTTCCAAGAAGTGCCACTAATAACTTGGTAAT
131 AATCTCTTTAGATGTTTTGTGA-ATTTTTCCAAGAAGTGCCACTAATAACTTGGTAAT
* * * * * *
163267710 AACGATGCCGTTT-TGCAATCTACTAATAGATGTTTGTGGTGTTTTCTTGTGAAAACGTCAGTAA
1 AACGACGCAGTTTCTGCAATCTACTAATAGATGTTTGTGGCG-TTTCTAGCGAAAACGCCAGTAA
* * * *
163267774 ATCACACCTTTTGCAGCGTTTATAGAAGCGCCACTAATAAGAAGGATAT-AAAGGACGCCGTTTT
65 ATCACACCTTTTGCAGCCTTTATAAAAGCGCCACTAATAA-AAGGATATAAAACGACGACGTTTT
* * * ***
163267838 -ACATTCTCTTAATGGATGTTTTGTG-GTTTTTTTTAGAAGTGCCACTAATAAC
129 GA-AATCTCTT--TAGATGTTTTGTGAATTTTTCCAAGAAGTGCCACTAATAAC
163267890 AAAGCTTCAA
Statistics
Matches: 149, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
187 26 0.17
188 104 0.70
189 7 0.05
190 12 0.08
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (187 bp):
AACGACGCAGTTTCTGCAATCTACTAATAGATGTTTGTGGCGTTTCTAGCGAAAACGCCAGTAAA
TCACACCTTTTGCAGCCTTTATAAAAGCGCCACTAATAAAAGGATATAAAACGACGACGTTTTGA
AATCTCTTTAGATGTTTTGTGAATTTTTCCAAGAAGTGCCACTAATAACTTGGTAAT
Found at i:163268402 original size:21 final size:22
Alignment explanation
Indices: 163268378--163268433 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
163268368 GTTTAAGGTT
*
163268378 TTATGGTTTTGA-ATTTAGGGC
1 TTATGGTTTTAAGATTTAGGGC
*
163268399 TTATGG-TTTAAGATTTAGGGT
1 TTATGGTTTTAAGATTTAGGGC
*
163268420 TTATAGTTTTAAGA
1 TTATGGTTTTAAGA
163268434 CGTTTTATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.13
21 19 0.63
22 7 0.23
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.48
Consensus pattern (22 bp):
TTATGGTTTTAAGATTTAGGGC
Found at i:163268546 original size:32 final size:30
Alignment explanation
Indices: 163268472--163268548 Score: 75
Period size: 32 Copynumber: 2.5 Consensus size: 30
163268462 AGGTTTACAA
*
163268472 TTTTATGATTTAGGAATCTATATTTAAGGG
1 TTTTATGATTTAGGAACCTATATTTAAGGG
* * * *
163268502 TTTAAGGGTTTAGTACTACCTATAGTTT-AGGG
1 TTTTATGATTTAGGA--ACCTATA-TTTAAGGG
163268534 TTTTATGATTTAGGA
1 TTTTATGATTTAGGA
163268549 TTCAAGGTTT
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
30 11 0.31
32 21 0.60
33 3 0.09
ACGTcount: A:0.27, C:0.05, G:0.22, T:0.45
Consensus pattern (30 bp):
TTTTATGATTTAGGAACCTATATTTAAGGG
Found at i:163268594 original size:21 final size:21
Alignment explanation
Indices: 163268527--163268594 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
163268517 CTACCTATAG
* *
163268527 TTTAGGGTTTTATGATTTAGGA
1 TTTAAGGTTTAAT-ATTTAGGA
* *
163268549 TTCAAGGTTTAATATTTAGGG
1 TTTAAGGTTTAATATTTAGGA
*
163268570 TTTAAGGTTT-ATAGTTTATGA
1 TTTAAGGTTTAATA-TTTAGGA
163268591 TTTA
1 TTTA
163268595 CGACTACAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
20 3 0.08
21 25 0.66
22 10 0.26
ACGTcount: A:0.26, C:0.01, G:0.22, T:0.50
Consensus pattern (21 bp):
TTTAAGGTTTAATATTTAGGA
Found at i:163269538 original size:40 final size:40
Alignment explanation
Indices: 163269475--163269558 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 40
163269465 CTATAGGTCA
** * *
163269475 ATCTTTAGCGGCGCTTCCTTAAAAATGTCGCTAATGCTCG
1 ATCTTTAGCGGCGCTTCAATAAAAACGCCGCTAATGCTCG
* * *
163269515 ATCTTTAGCGGCGCTTTAATAAAAACGCCTCTAATTCTCG
1 ATCTTTAGCGGCGCTTCAATAAAAACGCCGCTAATGCTCG
163269555 ATCT
1 ATCT
163269559 ATTCGATTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (40 bp):
ATCTTTAGCGGCGCTTCAATAAAAACGCCGCTAATGCTCG
Found at i:163272460 original size:40 final size:40
Alignment explanation
Indices: 163272415--163272582 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
163272405 CGGAATATAA
163272415 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
163272455 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
163272495 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
163272535 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
163272575 CCGGATAT
1 CCGGATAT
163272583 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:163280456 original size:40 final size:40
Alignment explanation
Indices: 163280411--163280577 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
163280401 CGGAATATAA
163280411 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
163280451 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
163280491 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
163280531 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
163280570 CCGGATAT
1 CCGGATAT
163280578 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:163284109 original size:26 final size:26
Alignment explanation
Indices: 163284074--163284123 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
163284064 CTAAGTATGG
*
163284074 AAAATTACCATTATACCCCTAGGGGC
1 AAAATGACCATTATACCCCTAGGGGC
*
163284100 AAAATGACCATTTTACCCCTAGGG
1 AAAATGACCATTATACCCCTAGGG
163284124 TTAATTATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (26 bp):
AAAATGACCATTATACCCCTAGGGGC
Found at i:163302539 original size:30 final size:30
Alignment explanation
Indices: 163302481--163302541 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
163302471 TTCCCAAGCC
*
163302481 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTATAAATATGCAAAAGTT
* * * *
163302511 TAGGGGCAAAATTATAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTATAAATATGCAAAAGTT
163302541 T
1 T
163302542 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTATAAATATGCAAAAGTT
Found at i:163310689 original size:27 final size:27
Alignment explanation
Indices: 163310310--163310731 Score: 356
Period size: 27 Copynumber: 15.7 Consensus size: 27
163310300 TACCCTAGAG
* * *
163310310 GGGTATTTTGGTAATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* * * *
163310337 GGTTATTTTGGTAATTTTATAAA-CTAA
1 GGGTATTTCGGTAATTTTACAAATC-GA
*
163310364 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * * *
163310391 GGATATTTCAGTAATTTTACAATTTGT
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
163310418 GGGTATGTCGATAATTTTACAAA-CTGG
1 GGGTATTTCGGTAATTTTACAAATC-GA
*
163310445 GGGTATTTTGGTAATTTTAC-AATCTGA
1 GGGTATTTCGGTAATTTTACAAATC-GA
163310472 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
***
163310499 GGGTATTTTTATAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * *
163310526 GGGTATTTCAGTAATTTAAGAAATCAGG
1 GGGTATTTCGGTAATTTTACAAATC-GA
* * *
163310554 GGGTATTTTGATAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
** *
163310581 GGGTATTTTAGTAA-TTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * *
163310607 GGGTATTTTGGTAATTTCACATATCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
** * *
163310634 GGGTATTTCGGTAATTTTGTAAGTTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
163310661 GGGTATTTCGGTAATTTCACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
**
163310688 GGGTA-TTCGGTAA-TTCCCAAATC-A
1 GGGTATTTCGGTAATTTTACAAATCGA
*
163310712 GGGGTATTTTGGTAATTTTA
1 -GGGTATTTCGGTAATTTTA
163310732 AACAATTTGT
Statistics
Matches: 322, Mismatches: 62, Indels: 22
0.79 0.15 0.05
Matches are distributed among these distances:
24 1 0.00
25 14 0.04
26 43 0.13
27 237 0.74
28 27 0.08
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:163311868 original size:58 final size:58
Alignment explanation
Indices: 163311778--163311887 Score: 211
Period size: 58 Copynumber: 1.9 Consensus size: 58
163311768 GGGAAGAAGA
*
163311778 AAAGTTCGATTTCGACACAAAAATTAAGTGTCTAATCGGCCAAGGAAGTAGCAATTGC
1 AAAGTTCGATTTCAACACAAAAATTAAGTGTCTAATCGGCCAAGGAAGTAGCAATTGC
163311836 AAAGTTCGATTTCAACACAAAAATTAAGTGTCTAATCGGCCAAGGAAGTAGC
1 AAAGTTCGATTTCAACACAAAAATTAAGTGTCTAATCGGCCAAGGAAGTAGC
163311888 GATTCGAGAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (58 bp):
AAAGTTCGATTTCAACACAAAAATTAAGTGTCTAATCGGCCAAGGAAGTAGCAATTGC
Found at i:163315409 original size:68 final size:70
Alignment explanation
Indices: 163315337--163315534 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
163315327 ACACCCTGTA
* * * *
163315337 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
163315399 ATAAAT
65 ATAAAT
*
163315405 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
163315470 ATAAAT
65 ATAAAT
*
163315476 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
163315535 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:163315448 original size:41 final size:41
Alignment explanation
Indices: 163315403--163315520 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
163315393 TGAAAGATAA
163315403 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
163315444 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
163315474 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
163315515 ATGTAG
1 ATGTAG
163315521 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:163315460 original size:71 final size:71
Alignment explanation
Indices: 163315371--163315534 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
163315361 GAGATGTATC
163315371 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
163315436 AGGACA
66 AGGACA
163315442 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
163315507 AGGACA
66 AGGACA
163315513 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
163315535 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:163322975 original size:68 final size:70
Alignment explanation
Indices: 163322903--163323100 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
163322893 ACACCCTGTA
* * * *
163322903 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
163322965 ATAAAT
65 ATAAAT
*
163322971 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
163323036 ATAAAT
65 ATAAAT
*
163323042 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
163323101 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:163323014 original size:41 final size:41
Alignment explanation
Indices: 163322969--163323086 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
163322959 TGAAAGATAA
163322969 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
163323010 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
163323040 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
163323081 ATGTAG
1 ATGTAG
163323087 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:163323026 original size:71 final size:71
Alignment explanation
Indices: 163322937--163323100 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
163322927 GAGATGTATC
163322937 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
163323002 AGGACA
66 AGGACA
163323008 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
163323073 AGGACA
66 AGGACA
163323079 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
163323101 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:163332555 original size:24 final size:24
Alignment explanation
Indices: 163332516--163332569 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
163332506 CCGGTTAGGT
* * *
163332516 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGATGATCCGACGAGCCA
*
163332540 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
163332564 TCCCGG
1 TCCCGG
163332570 GATACACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.13, C:0.41, G:0.31, T:0.15
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:163332694 original size:58 final size:59
Alignment explanation
Indices: 163332603--163332723 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
163332593 CCCTCCCCAA
* *
163332603 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
163332662 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
163332720 TCCC
1 TCCC
163332724 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:163333147 original size:24 final size:24
Alignment explanation
Indices: 163333120--163333197 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
163333110 CCGGTTAGGT
* *
163333120 TCCCGGCGGTGCTCCGGCGATCTA
1 TCCCGGCGGTGCTCCGGCGAGCCA
163333144 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
163333168 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
163333192 TCCCGG
1 TCCCGG
163333198 AATATCGAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.08, C:0.41, G:0.36, T:0.15
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:163333518 original size:85 final size:85
Alignment explanation
Indices: 163333384--163334084 Score: 861
Period size: 85 Copynumber: 8.2 Consensus size: 85
163333374 CACATTGCTG
* * * * * *
163333384 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
163333449 CCACCATCGGCAACCTAGGCGC
65 GCACCATCGGC-ACCTAGGCGC
* * * ** *
163333471 C-TGG-TCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTCATGTAGGAGCTTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
163333534 CCACCATCGGCAACCTAGGC-C
65 GCACCATCGGC-ACCTAGGCGC
*
163333555 CTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
163333619 GCACCATCGGCACCTTGGTG-
65 GCACCATCGGCACCTAGGCGC
*
163333639 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
163333704 GCACCATCGGCAACCTAGGC-C
65 GCACCATCGGC-ACCTAGGCGC
*
163333725 CTTGG-TCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
163333788 CCACCATCGGCACCTAGGC-C
65 GCACCATCGGCACCTAGGCGC
*
163333808 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
163333873 GCACCATCGGCACTTTGGTG-
65 GCACCATCGGCACCTAGGCGC
** *
163333893 CTTGGATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
163333958 GCACCATCGGCACCTTGGTGC
65 GCACCATCGGCACCTAGGCGC
* * * * **
163333979 CTTGGATGTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
*
163334043 ACACCATCGGCAACCTAGGACG-
65 GCACCATCGGC-ACCTAGG-CGC
*
163334065 -TTGGATGTGCGGGTGCCTCG
1 CTTGGATGTGCGGGAGCCTCG
163334085 AGCAGCAGGG
Statistics
Matches: 549, Mismatches: 49, Indels: 34
0.87 0.08 0.05
Matches are distributed among these distances:
83 29 0.05
84 88 0.16
85 343 0.62
86 87 0.16
87 2 0.00
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (85 bp):
CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
CACCATCGGCACCTAGGCGC
Found at i:163333528 original size:42 final size:42
Alignment explanation
Indices: 163333384--163334084 Score: 833
Period size: 43 Copynumber: 16.5 Consensus size: 42
163333374 CACATTGCTG
* * * * * *
163333384 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
*
163333427 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGC-C
*
163333471 C-TGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * ** * *
163333512 CCTGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
163333555 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* **
163333597 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
163333639 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
163333682 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
163333725 CTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
163333766 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
163333808 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * **
163333851 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACTTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** *
163333893 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
163333936 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC
* * * * **
163333979 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
163334021 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
163334064 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
163334085 AGCAGCAGGG
Statistics
Matches: 581, Mismatches: 60, Indels: 34
0.86 0.09 0.05
Matches are distributed among these distances:
41 32 0.06
42 241 0.41
43 305 0.52
44 3 0.01
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:163333990 original size:128 final size:128
Alignment explanation
Indices: 163333368--163334084 Score: 961
Period size: 128 Copynumber: 5.6 Consensus size: 128
163333358 GGTACGGGAG
* * * * * * *
163333368 CATCGGCACATTGCTGCTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCCCTTGGT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT
* *
163333433 CGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGCC-TGGTCGTGCGGGAGCCTCGGCCAC
66 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC-CCTTGGTCGTGCGGGAGCCTCGGGCAC
* ** * * * *
163333496 CATCGGCACCTAGGCCCCTGGTCATGT--AGGAGCTTCGGCCACCATCGGCAACCTAGGCCCTTG
1 CATCGGCACCTTGGTGCTTGG--ATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTG
*
163333559 GTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
64 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* *
163333623 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT
*
163333688 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-AC
66 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* ** *
163333750 CATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCTTGG
1 CATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG
*
163333813 AT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCAC
65 -TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* * *
163333877 CATCGGCACTTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT
* * * *
163333942 CGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTTGGAT-GTGCGGGAGCCTCGAGCAG
66 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCAC
* * *
163334005 CATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACGTTGGA
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-
*
163334070 T-GTGCGGGTGCCTCG
65 TCGTGCGGGAGCCTCG
163334085 AGCAGCAGGG
Statistics
Matches: 522, Mismatches: 52, Indels: 30
0.86 0.09 0.05
Matches are distributed among these distances:
125 4 0.01
126 73 0.14
127 204 0.39
128 236 0.45
129 2 0.00
130 3 0.01
ACGTcount: A:0.14, C:0.33, G:0.34, T:0.18
Consensus pattern (128 bp):
CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT
CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
Found at i:163341969 original size:24 final size:24
Alignment explanation
Indices: 163341930--163341983 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
163341920 CCGGTTAGGT
* * *
163341930 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGATGATCCGACGAGCCA
*
163341954 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
163341978 TCCCGG
1 TCCCGG
163341984 GATACACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.13, C:0.41, G:0.31, T:0.15
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:163342108 original size:58 final size:59
Alignment explanation
Indices: 163342017--163342137 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
163342007 CCCTCCCCAA
* *
163342017 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
163342076 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
163342134 TCCC
1 TCCC
163342138 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:163342605 original size:57 final size:57
Alignment explanation
Indices: 163342517--163342633 Score: 234
Period size: 57 Copynumber: 2.1 Consensus size: 57
163342507 TTATTAAGTT
163342517 CACCGTCAATGTTAATAATTACAGCACATTGAATTAAGGATAAGATAAGAATGAATG
1 CACCGTCAATGTTAATAATTACAGCACATTGAATTAAGGATAAGATAAGAATGAATG
163342574 CACCGTCAATGTTAATAATTACAGCACATTGAATTAAGGATAAGATAAGAATGAATG
1 CACCGTCAATGTTAATAATTACAGCACATTGAATTAAGGATAAGATAAGAATGAATG
163342631 CAC
1 CAC
163342634 AGTGAACAAG
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.44, C:0.14, G:0.17, T:0.26
Consensus pattern (57 bp):
CACCGTCAATGTTAATAATTACAGCACATTGAATTAAGGATAAGATAAGAATGAATG
Found at i:163346728 original size:37 final size:37
Alignment explanation
Indices: 163346687--163346760 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
163346677 ATAGGGACTG
*
163346687 TATAAGCTTAAACAATTAATTGTAAAATTATAATTAA
1 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
*
163346724 TATAAGCTTAAACAATTAGTTGCAAAATTATAATTAA
1 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
163346761 CAATTTGATG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (37 bp):
TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
Found at i:163347443 original size:16 final size:18
Alignment explanation
Indices: 163347422--163347465 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
163347412 ATGTTAAATC
*
163347422 ATTTGAT-TGA-AGTCTA
1 ATTTGATATGATAGTATA
163347438 ATTTGAATATGATAGTATA
1 ATTTG-ATATGATAGTATA
163347457 ATTTGATAT
1 ATTTGATAT
163347466 ACTTTAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 5 0.21
17 2 0.08
18 7 0.29
19 10 0.42
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.45
Consensus pattern (18 bp):
ATTTGATATGATAGTATA
Found at i:163348569 original size:17 final size:17
Alignment explanation
Indices: 163348542--163348581 Score: 71
Period size: 17 Copynumber: 2.3 Consensus size: 17
163348532 CACTGGAAGA
163348542 ATCCAACAAATTGAAATT
1 ATCC-ACAAATTGAAATT
163348560 ATCCACAAATTGAAATT
1 ATCCACAAATTGAAATT
163348577 ATCCA
1 ATCCA
163348582 ACTAATCACC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.47, C:0.20, G:0.05, T:0.28
Consensus pattern (17 bp):
ATCCACAAATTGAAATT
Found at i:163349967 original size:27 final size:28
Alignment explanation
Indices: 163349911--163349980 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
163349901 AAATTTGTAC
163349911 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
163349939 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
163349966 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
163349981 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:163349991 original size:27 final size:27
Alignment explanation
Indices: 163349911--163349992 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
163349901 AAATTTGTAC
* *
163349911 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
163349939 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
163349966 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
163349993 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:163358023 original size:24 final size:24
Alignment explanation
Indices: 163357991--163358041 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
163357981 CCATTTCAAC
163357991 TACTTAGTTTCATATTAAAAAACA
1 TACTTAGTTTCATATTAAAAAACA
163358015 TACTTAGTTTCATATTAAAAAACA
1 TACTTAGTTTCATATTAAAAAACA
163358039 TAC
1 TAC
163358042 CAAATCCAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.45, C:0.14, G:0.04, T:0.37
Consensus pattern (24 bp):
TACTTAGTTTCATATTAAAAAACA
Found at i:163369857 original size:28 final size:28
Alignment explanation
Indices: 163369825--163369908 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
163369815 AATTGTGATC
163369825 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
163369853 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
163369875 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
163369903 ACGTGT
1 ACGTGT
163369909 ACGGATAATT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:163369942 original size:48 final size:49
Alignment explanation
Indices: 163369770--163369999 Score: 277
Period size: 48 Copynumber: 4.7 Consensus size: 49
163369760 TCTATTGTGA
* * * ** *
163369770 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * **
163369819 GTGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 G-G-TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
163369870 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
163369919 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA-GTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
163369967 GGTCGCATGTGTAGTAACTATGTGCA-GCTACTA
1 GGTCACATGTGTAGT-ACTAAGTGCAGGCTACTA
163370000 TGCGTACCAG
Statistics
Matches: 160, Mismatches: 16, Indels: 11
0.86 0.09 0.06
Matches are distributed among these distances:
47 5 0.03
48 62 0.39
49 16 0.10
50 38 0.24
51 38 0.24
52 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:163374543 original size:27 final size:28
Alignment explanation
Indices: 163374487--163374556 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
163374477 AAATTTGTAC
163374487 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
163374515 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
163374542 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
163374557 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:163385590 original size:27 final size:28
Alignment explanation
Indices: 163385534--163385603 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
163385524 AAATTTGTAC
163385534 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
163385562 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
163385589 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
163385604 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:163389455 original size:32 final size:33
Alignment explanation
Indices: 163389411--163389504 Score: 86
Period size: 32 Copynumber: 2.8 Consensus size: 33
163389401 TCAAGCCCAT
*
163389411 TGGGCCTA-AGCCCATTCAGATAACAGTGATAC
1 TGGGCCTAGAGCCCATTCAGATAACAGTGAAAC
* * *
163389443 TGGGCC-AGAGCCCTTTTCAGATTACA-TTAAAC
1 TGGGCCTAGAGCCC-ATTCAGATAACAGTGAAAC
* *
163389475 TGGGCCTTAGCGCCTTATTCAGATAACAGT
1 TGGGCC-TAGAGCC-CATTCAGATAACAGT
163389505 ATGGCCCATA
Statistics
Matches: 48, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
31 1 0.02
32 21 0.44
33 10 0.21
34 15 0.31
35 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (33 bp):
TGGGCCTAGAGCCCATTCAGATAACAGTGAAAC
Found at i:163389852 original size:25 final size:26
Alignment explanation
Indices: 163389815--163389866 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
163389805 TCAAACATGC
163389815 ATTTAGGTCAATTTAACCCCAGGGGT
1 ATTTAGGTCAATTTAACCCCAGGGGT
* * *
163389841 ATTTCGGT-AATTTATCTCCAGGGGT
1 ATTTAGGTCAATTTAACCCCAGGGGT
163389866 A
1 A
163389867 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCCAGGGGT
Found at i:163397654 original size:21 final size:21
Alignment explanation
Indices: 163397630--163397672 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
163397620 CTCGTGATTT
*
163397630 TATCCCTTAAAAATTTCCTGA
1 TATCCCCTAAAAATTTCCTGA
163397651 TATCCCCTAAAAATTTCCTGA
1 TATCCCCTAAAAATTTCCTGA
163397672 T
1 T
163397673 TTTATCACAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.37
Consensus pattern (21 bp):
TATCCCCTAAAAATTTCCTGA
Found at i:163398695 original size:14 final size:15
Alignment explanation
Indices: 163398676--163398707 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
163398666 ACTTGTTCTT
163398676 AAAG-AAAAGAAAAA
1 AAAGAAAAAGAAAAA
163398690 AAAGAAAAAGAAAAA
1 AAAGAAAAAGAAAAA
163398705 AAA
1 AAA
163398708 AACTATGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAGAAAAA
Found at i:163404123 original size:29 final size:29
Alignment explanation
Indices: 163404084--163404162 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
163404074 CTTAATAATC
*
163404084 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
163404114 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
163404143 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
163404163 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:163407122 original size:6 final size:6
Alignment explanation
Indices: 163407110--163407142 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
163407100 TTGTGAATAA
*
163407110 TAAAA- TAAAAA TAAAAT TAAAAT TAAAAT TAAA
1 TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAA
163407143 TGAAGAAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (6 bp):
TAAAAT
Found at i:163409322 original size:40 final size:40
Alignment explanation
Indices: 163409249--163409456 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
163409239 CAATTGAATG
* * ** *
163409249 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * * **
163409289 ATACCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTAATT
* * **
163409329 ACATCTGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
163409369 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * **
163409409 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
163409449 ATATCCGG
1 ATATCCGG
163409457 TTGTATTCCG
Statistics
Matches: 137, Mismatches: 29, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
39 4 0.03
40 129 0.94
41 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
Found at i:163409391 original size:80 final size:80
Alignment explanation
Indices: 163409251--163409456 Score: 209
Period size: 80 Copynumber: 2.6 Consensus size: 80
163409241 ATTGAATGAT
* * ** * ** * * *
163409251 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATACCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGG-CAT
*
163409315 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
163409331 ATCTGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCATT
** *
163409396 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
163409411 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGG
163409457 TTGTATTCCG
Statistics
Matches: 104, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
79 2 0.02
80 100 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:163416099 original size:40 final size:40
Alignment explanation
Indices: 163416054--163416183 Score: 147
Period size: 40 Copynumber: 3.2 Consensus size: 40
163416044 CGGAATATAA
163416054 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
163416094 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
163416134 CCGGATGTAGCCACTAGCACAATTGCCTTCGCGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCG-GGTCTTAGC
163416175 CC-GATATAA
1 CCGGATATAA
163416184 TTTCCAGCAT
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
39 1 0.01
40 62 0.85
41 10 0.14
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:163422987 original size:7 final size:7
Alignment explanation
Indices: 163422975--163423003 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
163422965 CTTGGTATCA
163422975 TTGATGT
1 TTGATGT
163422982 TTGATGT
1 TTGATGT
163422989 TTGATGT
1 TTGATGT
163422996 TTGATGT
1 TTGATGT
163423003 T
1 T
163423004 GTGGTGGTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.28, T:0.59
Consensus pattern (7 bp):
TTGATGT
Found at i:163423936 original size:28 final size:28
Alignment explanation
Indices: 163423867--163423965 Score: 101
Period size: 28 Copynumber: 3.5 Consensus size: 28
163423857 GACAAGATTG
* * * *
163423867 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
*
163423897 GCACTAAGTGTGCGAGTTTGATTCTATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* **
163423925 GCACTAAGTGTGCGAG-CTGAAAATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
163423952 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
163423966 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 21 0.34
28 22 0.36
30 18 0.30
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.28
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:163423959 original size:27 final size:28
Alignment explanation
Indices: 163423896--163423965 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
163423886 AAAATTGTAC
* ***
163423896 AGCACTAAGTGTGCGAGTTTGATTCTAT
1 AGCACTAAGTGTGCGAGTCTGAAAATAT
163423924 AGCACTAAGTGTGCGAG-CTGAAAATAT
1 AGCACTAAGTGTGCGAGTCTGAAAATAT
163423951 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
163423966 GATTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAAAATAT
Found at i:163425519 original size:28 final size:28
Alignment explanation
Indices: 163425421--163425519 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
163425411 TCACAAATTG
* * *
163425421 GCACTAAGTGTGCG-GATTCAAATTATACA
1 GCACTAAGTGTGCGAG-TTC-GACTATATA
* * *
163425450 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTCGACTATATA
163425478 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTCGACTATAT-A
163425506 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
163425520 GGCTTATTGC
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 1 0.02
28 44 0.72
29 15 0.25
30 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTCGACTATATA
Found at i:163445170 original size:16 final size:16
Alignment explanation
Indices: 163445149--163445182 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
163445139 AACTGTAAAG
163445149 GCTAAAAAGCCAAAAA
1 GCTAAAAAGCCAAAAA
* *
163445165 GCTAAAAGGCTAAAAA
1 GCTAAAAAGCCAAAAA
163445181 GC
1 GC
163445183 CGAAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.18, G:0.18, T:0.09
Consensus pattern (16 bp):
GCTAAAAAGCCAAAAA
Found at i:163445609 original size:27 final size:27
Alignment explanation
Indices: 163445579--163445750 Score: 150
Period size: 27 Copynumber: 6.4 Consensus size: 27
163445569 TTATTTACTT
*
163445579 GTAAAATAACCAAAATACCCCTATAGG
1 GTAAAATGACCAAAATACCCCTATAGG
* * *
163445606 GTAAAATAACCGAAATATCCGC-ATTA-G
1 GTAAAATGACCAAAATA-CCCCTA-TAGG
163445633 GTAAAATGACCAAAATACCCCTATAGG
1 GTAAAATGACCAAAATACCCCTATAGG
* * * * *
163445660 ATAAAATGATCGAAATACCCTTGTAGG
1 GTAAAATGACCAAAATACCCCTATAGG
*** * *
163445687 GTAAAATGACTGTAATACCCCTGTTGG
1 GTAAAATGACCAAAATACCCCTATAGG
* * * *
163445714 GTAAAATGGCTATAATACCCCTATAAG
1 GTAAAATGACCAAAATACCCCTATAGG
163445741 GTAAAATGAC
1 GTAAAATGAC
163445751 TATTTTTCCC
Statistics
Matches: 119, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
26 5 0.04
27 109 0.92
28 5 0.04
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (27 bp):
GTAAAATGACCAAAATACCCCTATAGG
Found at i:163445809 original size:53 final size:54
Alignment explanation
Indices: 163445713--163445850 Score: 154
Period size: 53 Copynumber: 2.6 Consensus size: 54
163445703 ACCCCTGTTG
* ** * ** * * *
163445713 GGTAAAATGGCTATAATACCCCTATAAGGTAAAATGACTATTTTTCCCTTATGT
1 GGTAAAATGACTATTTTACCCTTATGTGGTAAAATGACGATTTTACCCTTATGA
* *
163445767 GTTAAAATGA-TGA-TTTGCCCTTATGTGGTAAAATGACGATTTTACCCTTATGA
1 GGTAAAATGACT-ATTTTACCCTTATGTGGTAAAATGACGATTTTACCCTTATGA
163445820 GGTAAAATGACTATTTTACCCTTATGTGGTA
1 GGTAAAATGACTATTTTACCCTTATGTGGTA
163445851 GGATGATTGT
Statistics
Matches: 68, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
53 42 0.62
54 26 0.38
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.37
Consensus pattern (54 bp):
GGTAAAATGACTATTTTACCCTTATGTGGTAAAATGACGATTTTACCCTTATGA
Found at i:163445856 original size:27 final size:27
Alignment explanation
Indices: 163445713--163445850 Score: 154
Period size: 27 Copynumber: 5.1 Consensus size: 27
163445703 ACCCCTGTTG
* ** * **
163445713 GGTAAAATGGCTATAATACCCCTATAA
1 GGTAAAATGACTATTTTACCCTTATGT
*
163445740 GGTAAAATGACTATTTTTCCCTTATGT
1 GGTAAAATGACTATTTTACCCTTATGT
* *
163445767 GTTAAAATGA-TGA-TTTGCCCTTATGT
1 GGTAAAATGACT-ATTTTACCCTTATGT
* *
163445793 GGTAAAATGACGATTTTACCCTTATGA
1 GGTAAAATGACTATTTTACCCTTATGT
163445820 GGTAAAATGACTATTTTACCCTTATGT
1 GGTAAAATGACTATTTTACCCTTATGT
163445847 GGTA
1 GGTA
163445851 GGATGATTGT
Statistics
Matches: 93, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
26 23 0.25
27 70 0.75
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.37
Consensus pattern (27 bp):
GGTAAAATGACTATTTTACCCTTATGT
Found at i:163446230 original size:18 final size:18
Alignment explanation
Indices: 163446207--163446247 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
163446197 TGCATACTGC
163446207 TTACTGTAACTGCACTAA
1 TTACTGTAACTGCACTAA
* * *
163446225 TTACTGTTACTTCACTAT
1 TTACTGTAACTGCACTAA
163446243 TTACT
1 TTACT
163446248 ATTAAGCAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.27, C:0.22, G:0.07, T:0.44
Consensus pattern (18 bp):
TTACTGTAACTGCACTAA
Found at i:163448053 original size:20 final size:20
Alignment explanation
Indices: 163448028--163448066 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
163448018 TAAATGTGGT
163448028 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
163448048 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
163448067 TGTATTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:163448200 original size:24 final size:24
Alignment explanation
Indices: 163448116--163448262 Score: 206
Period size: 25 Copynumber: 6.0 Consensus size: 24
163448106 GGAGGAAGTG
163448116 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
163448140 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
* *
163448165 GATAAAGGGCTTATGCCCCAATTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
163448190 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
163448214 TAAAAGGGCTTATACCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
163448238 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
163448263 ATGATAAAGC
Statistics
Matches: 113, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
24 55 0.49
25 58 0.51
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:163448208 original size:49 final size:49
Alignment explanation
Indices: 163448118--163448271 Score: 204
Period size: 48 Copynumber: 3.1 Consensus size: 49
163448108 AGGAAGTGTA
*
163448118 AAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATTA-AAAGGGCTTATGCCCCAGTTATGAT
* *
163448168 AAAGGGCTTATGCCCCAATTATTAAAAGGGCTTATGCCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATGAT
* *
163448216 AAAGGGCTTATACCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATATGAT
1 AAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC-CCAG-T-TATGAT
163448268 AAAG
1 AAAG
163448272 CAGCTATGCT
Statistics
Matches: 92, Mismatches: 7, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
48 31 0.34
49 30 0.33
50 23 0.25
51 4 0.04
52 4 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATGAT
Found at i:163451340 original size:17 final size:18
Alignment explanation
Indices: 163451298--163451346 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
163451288 AGTTGAAAAG
163451298 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
163451317 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
163451334 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
163451347 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:163452234 original size:40 final size:40
Alignment explanation
Indices: 163452168--163452334 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
163452158 AAATTGAATG
* * *
163452168 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
163452207 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
163452247 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
163452287 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
163452327 ATATCCGG
1 ATATCCGG
163452335 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:163459341 original size:17 final size:18
Alignment explanation
Indices: 163459299--163459347 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
163459289 AGTTGAAAAG
163459299 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
163459318 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
163459335 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
163459348 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:163460234 original size:40 final size:40
Alignment explanation
Indices: 163460168--163460334 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
163460158 AAATTGAATG
* * *
163460168 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
163460207 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
163460247 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
163460287 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
163460327 ATATCCGG
1 ATATCCGG
163460335 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:163466088 original size:28 final size:28
Alignment explanation
Indices: 163466019--163466119 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
163466009 GACAAGATTG
* * * *
163466019 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
163466049 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
163466077 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
163466106 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
163466120 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:163473588 original size:29 final size:29
Alignment explanation
Indices: 163473554--163473685 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
163473544 TACTCGATTT
** * *
163473554 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
163473583 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
163473612 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
163473641 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
163473670 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
163473686 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:163481514 original size:29 final size:29
Alignment explanation
Indices: 163481481--163481554 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
163481471 CCTTCGAGCT
163481481 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
163481510 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
163481539 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
163481555 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:163481515 original size:58 final size:58
Alignment explanation
Indices: 163481422--163481554 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
163481412 ATACTCGATT
* * * * *
163481422 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
163481480 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
163481538 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
163481555 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:163484933 original size:28 final size:28
Alignment explanation
Indices: 163484864--163484964 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
163484854 GACAAGATTG
* * * *
163484864 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
163484894 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
163484922 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
163484951 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
163484965 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:163486603 original size:2 final size:2
Alignment explanation
Indices: 163486596--163486621 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
163486586 ATGTGCAAAC
163486596 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
163486622 GTGCAAGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:163489390 original size:29 final size:29
Alignment explanation
Indices: 163489350--163489451 Score: 147
Period size: 29 Copynumber: 3.6 Consensus size: 29
163489340 GTTGAGAGAT
*
163489350 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
163489379 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
*
163489408 TGGCACT-AGTGTGCGAG-TTTAAA-GCATA
1 TGGCACTAAGTGTGCGAGCTTGAAATGC--A
163489436 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
163489452 CGGCTGATTA
Statistics
Matches: 68, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
26 2 0.03
27 5 0.07
28 18 0.26
29 43 0.63
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:163492968 original size:29 final size:29
Alignment explanation
Indices: 163492929--163493007 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
163492919 CTTAATAATC
*
163492929 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
163492959 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
163492988 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
163493008 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:163494140 original size:17 final size:18
Alignment explanation
Indices: 163494103--163494140 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
163494093 CACTTTTTTT
163494103 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
163494122 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
163494139 TT
1 TT
163494141 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:163501034 original size:40 final size:40
Alignment explanation
Indices: 163500989--163501155 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
163500979 CGGAATATAA
163500989 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
163501029 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
163501069 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
163501109 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
163501148 CCGGATAT
1 CCGGATAT
163501156 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:163501139 original size:80 final size:79
Alignment explanation
Indices: 163500989--163501155 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
163500979 CGGAATATAA
* *
163500989 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
163501054 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
163501069 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
163501131 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
163501148 CCGGATAT
1 CCGGATAT
163501156 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:163502004 original size:17 final size:19
Alignment explanation
Indices: 163501981--163502026 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
163501971 AAGAAGCATG
163501981 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
163501999 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
163502017 AATCATGCTC
1 AATCATGCTC
163502027 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:163515195 original size:24 final size:24
Alignment explanation
Indices: 163515163--163515225 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
163515153 AATCTCAAAT
163515163 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
163515187 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
163515211 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
163515226 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:163522367 original size:25 final size:25
Alignment explanation
Indices: 163522330--163522409 Score: 110
Period size: 26 Copynumber: 3.2 Consensus size: 25
163522320 GGCCTAGCAT
163522330 CTTTT-AAT-AACTGGGGCAAAGCC
1 CTTTTCAATAAACTGGGGCAAAGCC
163522353 CTTTTCAATAAACTGGGGCAAAGCC
1 CTTTTCAATAAACTGGGGCAAAGCC
* *
163522378 CTTTTTCGATAAATTGGGGCAAAAGCC
1 C-TTTTCAATAAACTGGGGC-AAAGCC
163522405 CTTTT
1 CTTTT
163522410 GCACTTCCTC
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
23 5 0.10
24 3 0.06
25 16 0.31
26 20 0.39
27 7 0.14
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (25 bp):
CTTTTCAATAAACTGGGGCAAAGCC
Found at i:163522390 original size:26 final size:26
Alignment explanation
Indices: 163522331--163522409 Score: 110
Period size: 25 Copynumber: 3.1 Consensus size: 26
163522321 GCCTAGCATC
163522331 TTTT-AAT-AACTGGGGCAAAGCCC-
1 TTTTCAATAAACTGGGGCAAAGCCCT
163522354 TTTTCAATAAACTGGGGCAAAGCCCT
1 TTTTCAATAAACTGGGGCAAAGCCCT
* *
163522380 TTTTCGATAAATTGGGGCAAAAGCCCT
1 TTTTCAATAAACTGGGGC-AAAGCCCT
163522407 TTT
1 TTT
163522410 GCACTTCCTC
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
23 4 0.08
24 3 0.06
25 16 0.32
26 16 0.32
27 11 0.22
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
TTTTCAATAAACTGGGGCAAAGCCCT
Found at i:163522488 original size:11 final size:11
Alignment explanation
Indices: 163522457--163522504 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
163522447 AAATGAATAC
163522457 ATCATGTGCAT
1 ATCATGTGCAT
*
163522468 ATCA--TACAT
1 ATCATGTGCAT
163522477 ATCATGTGCAT
1 ATCATGTGCAT
*
163522488 ATCATGTCCA-
1 ATCATGTGCAT
163522498 ATCATGT
1 ATCATGT
163522505 ATATCAAAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 7 0.22
11 17 0.53
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:163530003 original size:30 final size:31
Alignment explanation
Indices: 163529940--163530022 Score: 134
Period size: 30 Copynumber: 2.7 Consensus size: 31
163529930 TCAATCTCAA
163529940 CATAT-ACTGGGCCGAAGCCTTTGCATTATT
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
*
163529970 CATATCACTGGGCCGAAGCCTTTTCATTA-T
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
*
163530000 CATATCACTGGGTCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
163530023 ACCATAAACG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 28 0.56
31 22 0.44
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTGCATTATT
Found at i:163530271 original size:25 final size:25
Alignment explanation
Indices: 163530243--163530313 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
163530233 CTCTTTTAAT
* *
163530243 AACTGGGGCAAAGACCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
163530268 AACTGGGGCAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
163530293 GACTAGGGCAAAAGCCCTTTT
1 AACTGGGGC-AAAGCCCTTTT
163530314 GCACTTCCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 30 0.73
26 11 0.27
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:163530407 original size:10 final size:11
Alignment explanation
Indices: 163530363--163530409 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
163530353 ATGAATACAC
*
163530363 CATGTGCATAT
1 CATGTACATAT
163530374 CA--TACATAT
1 CATGTACATAT
163530383 CATGTACATAT
1 CATGTACATAT
*
163530394 CATGTCCA-AT
1 CATGTACATAT
163530404 CATGTA
1 CATGTA
163530410 TATCAAAGTC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
9 8 0.26
10 7 0.23
11 16 0.52
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (11 bp):
CATGTACATAT
Found at i:163535123 original size:39 final size:39
Alignment explanation
Indices: 163535080--163535216 Score: 179
Period size: 39 Copynumber: 3.5 Consensus size: 39
163535070 TGTTTTTCAG
*
163535080 TATTGTGATATATGCTTAAATGTTATGAGATTATATGTA
1 TATTGTGATATATGCTTAAATGTTATGTGATTATATGTA
*
163535119 TATTGTGATATATGCTTGAATGTTATGTGATTATATG-A
1 TATTGTGATATATGCTTAAATGTTATGTGATTATATGTA
* * * *
163535157 GTATTGTGATATATGCTTGATTGTTAGGTGATTATATGTG
1 -TATTGTGATATATGCTTAAATGTTATGTGATTATATGTA
*
163535197 TAATAG-GATATATGCTTAAA
1 T-ATTGTGATATATGCTTAAA
163535217 ACTTAAAATG
Statistics
Matches: 87, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
38 1 0.01
39 83 0.95
40 3 0.03
ACGTcount: A:0.31, C:0.03, G:0.21, T:0.45
Consensus pattern (39 bp):
TATTGTGATATATGCTTAAATGTTATGTGATTATATGTA
Found at i:163535147 original size:22 final size:22
Alignment explanation
Indices: 163535122--163535194 Score: 59
Period size: 22 Copynumber: 3.5 Consensus size: 22
163535112 ATATGTATAT
163535122 TGTGATATATGCTTGAATGTTA
1 TGTGATATATGCTTGAATGTTA
*
163535144 TGTGAT-TAT--ATG-A-G-TA
1 TGTGATATATGCTTGAATGTTA
*
163535160 TTGTGATATATGCTTGATTGTTA
1 -TGTGATATATGCTTGAATGTTA
*
163535183 GGTGATTATATG
1 TGTGA-TATATG
163535195 TGTAATAGGA
Statistics
Matches: 39, Mismatches: 4, Indels: 15
0.67 0.07 0.26
Matches are distributed among these distances:
16 2 0.05
17 7 0.18
18 4 0.10
19 2 0.05
20 2 0.05
21 3 0.08
22 11 0.28
23 8 0.21
ACGTcount: A:0.26, C:0.03, G:0.25, T:0.47
Consensus pattern (22 bp):
TGTGATATATGCTTGAATGTTA
Found at i:163535328 original size:22 final size:22
Alignment explanation
Indices: 163535299--163535341 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
163535289 AACTGTTGAG
163535299 GTTGTGC-TGTATGG-TTGTTTC
1 GTTGTGCTTG-ATGGATTGTTTC
163535320 GTTGATGCTTGATGGATTGTTT
1 GTTG-TGCTTGATGGATTGTTT
163535342 GCATGGTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 4 0.21
22 7 0.37
23 8 0.42
ACGTcount: A:0.09, C:0.07, G:0.33, T:0.51
Consensus pattern (22 bp):
GTTGTGCTTGATGGATTGTTTC
Found at i:163538042 original size:49 final size:48
Alignment explanation
Indices: 163538007--163538157 Score: 257
Period size: 49 Copynumber: 3.1 Consensus size: 48
163537997 GGCCTAACTT
*
163538007 CTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
163538055 CTTTTTAATAACTGGGGCATAAGCCCTTTTTAATAACTGGGGCATAAGCC
1 C-TTTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCC
* *
163538105 CTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
163538153 CTTTT
1 CTTTT
163538158 GCACTTCCTC
Statistics
Matches: 98, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
48 28 0.29
49 46 0.47
50 24 0.24
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (48 bp):
CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
Found at i:163538066 original size:25 final size:24
Alignment explanation
Indices: 163538007--163538157 Score: 257
Period size: 24 Copynumber: 6.2 Consensus size: 24
163537997 GGCCTAACTT
*
163538007 CTTTTAATAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
163538031 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
163538055 CTTTTTAATAACTGGGGCATAAGCC
1 C-TTTTAATAACTGGGGCATAAGCC
163538080 CTTTTTAATAACTGGGGCATAAGCC
1 C-TTTTAATAACTGGGGCATAAGCC
*
163538105 CTTTTAATAACTAGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
163538129 CTTTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
163538153 CTTTT
1 CTTTT
163538158 GCACTTCCTC
Statistics
Matches: 122, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
24 73 0.60
25 49 0.40
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:163538228 original size:16 final size:16
Alignment explanation
Indices: 163538207--163538258 Score: 72
Period size: 16 Copynumber: 3.3 Consensus size: 16
163538197 TTATGAATAC
163538207 ATCATGTGCATATCAT
1 ATCATGTGCATATCAT
163538223 ATCATGTGCATATCAT
1 ATCATGTGCATATCAT
*
163538239 A-CATGT-CATGTGCAT
1 ATCATGTGCATAT-CAT
163538254 ATCAT
1 ATCAT
163538259 ACATACCATG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
14 4 0.12
15 9 0.27
16 20 0.61
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (16 bp):
ATCATGTGCATATCAT
Found at i:163538269 original size:20 final size:18
Alignment explanation
Indices: 163538203--163538262 Score: 88
Period size: 20 Copynumber: 3.3 Consensus size: 18
163538193 GCATTTATGA
163538203 ATACATCATGTGCATATC
1 ATACATCATGTGCATATC
163538221 AT--ATCATGTGCATATC
1 ATACATCATGTGCATATC
163538237 ATACATGTCATGTGCATATC
1 ATACA--TCATGTGCATATC
163538257 ATACAT
1 ATACAT
163538263 ACCATGTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
16 16 0.42
18 4 0.11
20 18 0.47
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (18 bp):
ATACATCATGTGCATATC
Found at i:163538338 original size:25 final size:25
Alignment explanation
Indices: 163538306--163538353 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
163538296 ATATATAAAC
* *
163538306 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
163538331 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
163538354 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:163541985 original size:29 final size:29
Alignment explanation
Indices: 163541952--163542053 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
163541942 TGACGAGATC
163541952 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
163541981 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
163542010 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
163542039 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
163542054 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:163549837 original size:29 final size:29
Alignment explanation
Indices: 163549804--163549905 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
163549794 TGACGAGATC
163549804 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
163549833 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
163549862 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
163549891 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
163549906 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:163554426 original size:40 final size:40
Alignment explanation
Indices: 163554318--163554527 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
163554308 CGGGATTTAA
* * * * *
163554318 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
163554358 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
163554398 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
163554438 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
163554478 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
163554518 CCGGATATAT
1 CCGGATATAT
163554528 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:163562559 original size:40 final size:40
Alignment explanation
Indices: 163562451--163562660 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
163562441 CGGGATTTAA
* * * * *
163562451 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
163562491 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
163562531 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
163562571 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
163562611 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
163562651 CCGGATATAT
1 CCGGATATAT
163562661 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:163564501 original size:40 final size:40
Alignment explanation
Indices: 163564423--163564571 Score: 178
Period size: 40 Copynumber: 3.8 Consensus size: 40
163564413 GGCTGTCACA
*
163564423 GAGTTACTATTTCCGGGCTAAG-CCCGAAGGCATTTGTGC
1 GAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
* * * *
163564462 GAGTTACAATGTCTGGGCTAAGTCTCGAAGGCATTTGTGC
1 GAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
* * *
163564502 GAGTTACTATAACCGGGCTACGTCCCGAAGGCATTTGAGC
1 GAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
* *
163564542 GAG-TAGCTATATCC-GGCTAAATTCCGAAGG
1 GAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
163564572 TACTTGGTTT
Statistics
Matches: 93, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 34 0.37
40 59 0.63
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
Found at i:163567290 original size:39 final size:39
Alignment explanation
Indices: 163567247--163567378 Score: 228
Period size: 39 Copynumber: 3.4 Consensus size: 39
163567237 GGTCTTTAAC
* ** *
163567247 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
163567286 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
163567325 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
163567364 CCGGATATATTTCCA
1 CCGGATATATTTCCA
163567379 ATCTCATATA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:163568527 original size:2 final size:2
Alignment explanation
Indices: 163568520--163568583 Score: 67
Period size: 2 Copynumber: 32.0 Consensus size: 2
163568510 ACATCAAATC
** *
163568520 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GCC GA -A TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA
* *
163568562 TA TA CA TA TA TA TA TT TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA
163568584 GCTCACAAAC
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
1 1 0.02
2 51 0.98
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (2 bp):
TA
Found at i:163577038 original size:43 final size:43
Alignment explanation
Indices: 163576990--163577075 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
163576980 AGCTAAATAC
163576990 CTAGTGAATGCATATGGGAATATGGAATATGGCATGAAATCTA
1 CTAGTGAATGCATATGGGAATATGGAATATGGCATGAAATCTA
163577033 CTAGTGAATGCATATGGGAATATGGAATATGGCATGAAATCTA
1 CTAGTGAATGCATATGGGAATATGGAATATGGCATGAAATCTA
163577076 TGGAAACACA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.37, C:0.09, G:0.26, T:0.28
Consensus pattern (43 bp):
CTAGTGAATGCATATGGGAATATGGAATATGGCATGAAATCTA
Found at i:163587563 original size:38 final size:38
Alignment explanation
Indices: 163587504--163587597 Score: 152
Period size: 38 Copynumber: 2.4 Consensus size: 38
163587494 TCAATCATGC
*
163587504 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
* *
163587543 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
163587581 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
163587598 ACTGTAAACG
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
38 41 0.79
39 11 0.21
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:163587833 original size:24 final size:24
Alignment explanation
Indices: 163587787--163587880 Score: 113
Period size: 23 Copynumber: 4.0 Consensus size: 24
163587777 GCTTTATCAT
*
163587787 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
** *
163587812 ATAACTGGGGCCGAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
163587836 ATAACT-GGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
163587858 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
163587881 TCACTTCCTC
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
22 6 0.10
23 29 0.47
24 15 0.24
25 12 0.19
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:163587955 original size:20 final size:20
Alignment explanation
Indices: 163587930--163587989 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
163587920 TATGATTACC
163587930 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
163587950 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
163587970 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
163587990 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:163595829 original size:37 final size:38
Alignment explanation
Indices: 163595761--163595853 Score: 152
Period size: 37 Copynumber: 2.4 Consensus size: 38
163595751 TCAATCATGC
*
163595761 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
163595800 ACTGGGCCGAAGCCTTTTCAT-TTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
163595837 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
163595854 ACTGTAAACG
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
37 32 0.62
38 9 0.17
39 11 0.21
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.39
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:163596091 original size:24 final size:24
Alignment explanation
Indices: 163596045--163596139 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
163596035 GCTTTATCAT
*
163596045 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
163596070 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
163596094 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
163596117 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
163596140 TCANNNNNNN
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 25 0.39
24 26 0.41
25 13 0.20
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Done.