Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 527 of 770
Found at i:163596124 original size:47 final size:49
Alignment explanation
Indices: 163596045--163596138 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
163596035 GCTTTATCAT
*
163596045 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGG-CATAAGCCCTTTCA
163596094 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCATAAGCCCTTT
163596139 TTCANNNNNN
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 2 0.05
47 19 0.45
48 9 0.21
49 12 0.29
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (49 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:163610532 original size:31 final size:31
Alignment explanation
Indices: 163610494--163610556 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
163610484 TCAATTTGAA
163610494 ATTAGGTCTAGGTTTCACACGGCCAAGACAC
1 ATTAGGTCTAGGTTTCACACGGCCAAGACAC
*
163610525 ATTAGGTCTAGTTTTCACACGGCCAAGACAC
1 ATTAGGTCTAGGTTTCACACGGCCAAGACAC
163610556 A
1 A
163610557 CTCCCGTGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (31 bp):
ATTAGGTCTAGGTTTCACACGGCCAAGACAC
Found at i:163625118 original size:36 final size:37
Alignment explanation
Indices: 163625071--163625141 Score: 117
Period size: 36 Copynumber: 1.9 Consensus size: 37
163625061 AGCTCAGACG
*
163625071 AAATCTCCACACGAAGTTATCGGGTC-TACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
*
163625107 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
163625142 ATATATTTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 24 0.75
37 8 0.25
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:163625414 original size:48 final size:48
Alignment explanation
Indices: 163625288--163625473 Score: 293
Period size: 48 Copynumber: 3.8 Consensus size: 48
163625278 GCACATCGCC
*
163625288 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
163625338 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
163625386 TGCATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
163625434 TACATATTTCACATTAGCCATTCGGCTTTACCACATATAC
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATAC
163625474 GCATGTTCAT
Statistics
Matches: 125, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
48 82 0.66
49 2 0.02
50 41 0.33
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:163625578 original size:47 final size:47
Alignment explanation
Indices: 163625442--163625588 Score: 177
Period size: 47 Copynumber: 3.1 Consensus size: 47
163625432 CATACATATT
* * * * *
163625442 TCACATTAGCCATTCGGCTTTACCACATATACGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* ** *
163625489 CCACATTGGCCATTCGGCCTTATCACGCATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
163625536 TCACATTGGCCAATCGGCCTTATCACATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
163625583 TCACAT
1 TCACAT
163625589 AAAATCCTAA
Statistics
Matches: 83, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 83 1.00
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.31
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:163626664 original size:14 final size:14
Alignment explanation
Indices: 163626645--163626675 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
163626635 CTCGGAAGTG
163626645 GTCGACGATTAGAT
1 GTCGACGATTAGAT
163626659 GTCGACGATTAGAT
1 GTCGACGATTAGAT
163626673 GTC
1 GTC
163626676 CACGGCTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (14 bp):
GTCGACGATTAGAT
Found at i:163629617 original size:86 final size:86
Alignment explanation
Indices: 163629460--163629620 Score: 216
Period size: 86 Copynumber: 1.9 Consensus size: 86
163629450 TAAAAAGAGG
* * * **
163629460 TGATTATGTGTGAGACCATGCCTGGGACATTGGCATCATATTGCGATTACGTGTAAGACCATGTC
1 TGATTATGTGTAAGACCATGCCTGGGACATTGGCATCATATTGCGATAACATGTAAGACCAAATC
*
163629525 TGGGACATTGGCATCGTTATA
66 TAGGACATTGGCATCGTTATA
* * * *
163629546 TGATTTTGTGTAAGACCATGTCTGGGACATTGGCATCGATA-TGTGATAACATGTAAGACTAAAT
1 TGATTATGTGTAAGACCATGCCTGGGACATTGGCATC-ATATTGCGATAACATGTAAGACCAAAT
163629610 CTAGGACATTG
65 CTAGGACATTG
163629621 CATTTTACGA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
86 61 0.95
87 3 0.05
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (86 bp):
TGATTATGTGTAAGACCATGCCTGGGACATTGGCATCATATTGCGATAACATGTAAGACCAAATC
TAGGACATTGGCATCGTTATA
Found at i:163629620 original size:43 final size:43
Alignment explanation
Indices: 163629459--163629604 Score: 186
Period size: 43 Copynumber: 3.4 Consensus size: 43
163629449 TTAAAAAGAG
* * *
163629459 GTGATTATGTGTGAGACCATGCCTGGGACATTGGCATC-ATATT
1 GTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATA-T
* *
163629502 GCGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAT
1 GTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATAT
* **
163629545 ATGATTTTGTGTAAGACCATGTCTGGGACATTGGCATCGATAT
1 GTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATAT
* *
163629588 GTGATAACATGTAAGAC
1 GTGATTACGTGTAAGAC
163629605 TAAATCTAGG
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
43 85 0.98
44 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.32
Consensus pattern (43 bp):
GTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATAT
Found at i:163633297 original size:46 final size:46
Alignment explanation
Indices: 163633230--163633358 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
163633220 TGTAACCCGC
* * * *
163633230 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
163633276 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
163633322 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
163633359 TGCTCAACCA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:163633377 original size:46 final size:45
Alignment explanation
Indices: 163633238--163633377 Score: 140
Period size: 46 Copynumber: 3.0 Consensus size: 45
163633228 GCCCATAAGC
* ** * *
163633238 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
163633284 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
163633330 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
163633376 GA
1 GA
163633378 CATGTCACTT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
46 79 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:163640810 original size:45 final size:45
Alignment explanation
Indices: 163640736--163640861 Score: 184
Period size: 45 Copynumber: 2.8 Consensus size: 45
163640726 TGTAACCCGC
* * *
163640736 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAG-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
163640782 CCATAAGTGAACTCAG-CTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAG-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
163640827 CCATAA-GAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGGAACTCGGACTCAACTCAACGAGTTCGGA
163640862 TGCTCAACCA
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
43 7 0.10
44 20 0.27
45 32 0.44
46 14 0.19
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (45 bp):
CCATAAGGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:163643652 original size:39 final size:37
Alignment explanation
Indices: 163643590--163643691 Score: 123
Period size: 39 Copynumber: 2.7 Consensus size: 37
163643580 TGAGAAATTG
*
163643590 AATGATATCCGGGCTAAGCCCCGAAGACAATTATGCT
1 AATGATATCCGGGCTAAGACCCGAAGACAATTATGCT
* * * *
163643627 GAAATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 --AATGATATCCGGGCTAAGACCCGAAGACAATTATGCT
* *
163643666 AGTGCTATCCGGGCTAAGACCCGAAG
1 AATGATATCCGGGCTAAGACCCGAAG
163643692 GCATTCGTGC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
37 22 0.41
39 32 0.59
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.22
Consensus pattern (37 bp):
AATGATATCCGGGCTAAGACCCGAAGACAATTATGCT
Found at i:163643723 original size:38 final size:35
Alignment explanation
Indices: 163643634--163643740 Score: 133
Period size: 38 Copynumber: 2.9 Consensus size: 35
163643624 GCTGAAATTA
*
163643634 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGC
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGC-AGTGC
**
163643671 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTTT
1 TATCCGGGCTAAGACCCGAAGGCATT-GTGCAGTGC
163643707 TAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 T--ATCCGGGCTAAGACCCGAAGGCA-TTGTGCA
163643741 AATCGTGATA
Statistics
Matches: 63, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
36 7 0.11
37 26 0.41
38 28 0.44
39 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (35 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCAGTGC
Found at i:163651539 original size:39 final size:40
Alignment explanation
Indices: 163651481--163651581 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
163651471 AAATTGAATG
* *
163651481 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
163651520 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
163651560 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
163651582 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:163651574 original size:40 final size:40
Alignment explanation
Indices: 163651481--163651631 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
163651471 AAATTGAATG
* * * * *
163651481 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
163651520 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
163651560 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
163651600 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
163651632 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
39 32 0.33
40 62 0.65
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:163651646 original size:40 final size:38
Alignment explanation
Indices: 163651477--163651648 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 38
163651467 TGAGAAATTG
* *
163651477 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
163651516 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
163651553 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
163651593 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
163651633 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
163651649 TAAAGTCCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 26 0.24
40 74 0.68
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:163665712 original size:27 final size:27
Alignment explanation
Indices: 163665650--163665739 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
163665640 AGGAAGCGTC
*
163665650 CTGGTGGCTA-TGCCACAAATTATTTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
163665678 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
163665705 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
163665734 CTGGTG
1 CTGGTG
163665740 ACTCTGTCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 22 0.41
28 25 0.46
29 7 0.13
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:163665750 original size:29 final size:28
Alignment explanation
Indices: 163665660--163665750 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
163665650 CTGGTGGCTA
* * * *
163665660 TGCCACAAATTATTTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
163665688 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
163665715 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
163665744 TGTCACA
1 TGCCACA
163665751 TTTTCTGTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 23 0.43
28 15 0.28
29 15 0.28
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:163665758 original size:55 final size:56
Alignment explanation
Indices: 163665650--163665764 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
163665640 AGGAAGCGTC
* * *
163665650 CTGGTGGCTATGCCACAAATTATTTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
163665705 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
163665761 CTGG
1 CTGG
163665765 CAGCCATACT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:163668570 original size:24 final size:25
Alignment explanation
Indices: 163668543--163668594 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
163668533 GCCTAGCCTC
163668543 TTTTAAT-AACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
*
163668567 TTTTGATAAACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
163668592 TTT
1 TTT
163668595 CGGTAAATTG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAGCCCT
Found at i:163668584 original size:25 final size:25
Alignment explanation
Indices: 163668550--163668619 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
163668540 CTCTTTTAAT
*
163668550 AACTAGGGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
163668575 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
* * *
163668600 AATTGGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
163668620 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:163669485 original size:27 final size:27
Alignment explanation
Indices: 163669424--163669500 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
163669414 GGGCATATTT
* *
163669424 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCCTATAGGGGTATTACGG
*
163669451 TCACTTTACCCTATAGGGGCT-TTACGG
1 TCATTTTACCCTATAGGGG-TATTACGG
*
163669478 TCTTTTTA-CCTATTAGGGGTATT
1 TCATTTTACCCTA-TAGGGGTATT
163669501 TTAGTCATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (27 bp):
TCATTTTACCCTATAGGGGTATTACGG
Found at i:163669571 original size:27 final size:27
Alignment explanation
Indices: 163669541--163669646 Score: 94
Period size: 27 Copynumber: 3.9 Consensus size: 27
163669531 GTAAATCTAC
163669541 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
163669568 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* **
163669594 AGAAAGTCAAGGGTATTTTTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* *
163669624 AAATC-AGGGTATTT-GGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
163669647 ACAAATTGAG
Statistics
Matches: 67, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
25 8 0.12
26 10 0.15
27 24 0.36
28 7 0.10
29 17 0.25
30 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:163669804 original size:27 final size:27
Alignment explanation
Indices: 163669768--163669924 Score: 226
Period size: 27 Copynumber: 5.9 Consensus size: 27
163669758 TCGAGGGTAT
* *
163669768 GGTAATTTTGTAAATCAAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* *
163669795 GGTAATTTTGTAAATCAAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
*
163669822 GGTAATTCTGTAAATCGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAAC
*
163669849 GGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* *
163669876 AGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
*
163669903 -GTAATTCTATAAATCGAGGGTA
1 GGTAATTCTGTAAATCGAGGGTA
163669925 CTTTGGTAAT
Statistics
Matches: 120, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
26 20 0.17
27 100 0.83
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:163669863 original size:81 final size:80
Alignment explanation
Indices: 163669766--163669924 Score: 255
Period size: 81 Copynumber: 2.0 Consensus size: 80
163669756 AATCGAGGGT
* * *
163669766 ATGGTAATTTTGTAAATCAAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAACGGTAATTCT
1 ATGGTAATTCTATAAATCAAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAAC-GTAATTCT
*
163669831 GTAAATCGAGGGTAAA
65 ATAAATCGAGGGTAAA
* *
163669847 ATGGTAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGTAATTCTA
1 ATGGTAATTCTATAAATCAAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAACGTAATTCTA
163669912 TAAATCGAGGGTA
66 TAAATCGAGGGTA
163669925 CTTTGGTAAT
Statistics
Matches: 72, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
80 21 0.29
81 51 0.71
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.30
Consensus pattern (80 bp):
ATGGTAATTCTATAAATCAAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAACGTAATTCTA
TAAATCGAGGGTAAA
Found at i:163669943 original size:27 final size:27
Alignment explanation
Indices: 163669603--163669943 Score: 164
Period size: 27 Copynumber: 12.9 Consensus size: 27
163669593 TAGAAAGTCA
* *
163669603 AGGGTATTTTTGTAATTTTGTAAATC-
1 AGGGTATTTTGGTAATTTTATAAATCG
* *
163669629 AGGGTA-TTTGGTAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTATAAATCG
* * *
163669655 AGGGTATTTTGGTAATTTCACAAA-CC
1 AGGGTATTTTGGTAATTTTATAAATCG
* *
163669681 AGTGGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTGGTAATTTTATAAATCG
* **
163669708 AGGGGTATTTTGGTAATTCTATCCTAT--
1 A-GGGTATTTTGGTAATTTTAT-AAATCG
* * *
163669735 AGGGTATTTTAGTAATTTCA-CAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
* *
163669761 AGGGTA---TGGTAATTTTGTAAATCA
1 AGGGTATTTTGGTAATTTTATAAATCG
**** * *
163669785 AGGGTAAAACGGTAATTTTGTAAATCA
1 AGGGTATTTTGGTAATTTTATAAATCG
**** * *
163669812 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
*** *
163669839 AGGGTAAAATGGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
***** *
163669866 AGGGTAAAACAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
**** *
163669893 AGGGTA-AAACGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
* *
163669919 AGGGTACTTTGGTAATTTTACAAAT
1 AGGGTATTTTGGTAATTTTATAAAT
163669944 TAAGGACATT
Statistics
Matches: 261, Mismatches: 41, Indels: 25
0.80 0.13 0.08
Matches are distributed among these distances:
23 8 0.03
24 13 0.05
25 15 0.06
26 58 0.22
27 165 0.63
28 2 0.01
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.36
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAATCG
Found at i:163669969 original size:80 final size:81
Alignment explanation
Indices: 163669779--163669951 Score: 213
Period size: 81 Copynumber: 2.1 Consensus size: 81
163669769 GTAATTTTGT
** * *
163669779 AAATCAAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGT
1 AAATCAAGGACAAAACAGTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGT
*
163669844 AAAATGGTAATTCTAT
66 AAAATGGTAATTCTAC
* ** *
163669860 AAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAAC-GTAATTCTATAAATCGAGGGT
1 AAATCAAGGACAAAACAGTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGT
*** *
163669924 ACTTTGGTAATTTTAC
66 AAAATGGTAATTCTAC
*
163669940 AAATTAAGGACA
1 AAATCAAGGACA
163669952 TTTTAGTAAT
Statistics
Matches: 79, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
80 39 0.49
81 40 0.51
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.29
Consensus pattern (81 bp):
AAATCAAGGACAAAACAGTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGT
AAAATGGTAATTCTAC
Found at i:163672521 original size:25 final size:25
Alignment explanation
Indices: 163672485--163672553 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
163672475 CTCTTTTAAT
*
163672485 AACT-GGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
163672509 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
163672534 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
163672554 AGCACTTCTC
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 4 0.10
25 37 0.90
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:163672528 original size:24 final size:24
Alignment explanation
Indices: 163672472--163672553 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 24
163672462 CTGGAGGCCT
*
163672472 AGCCTCTTTTAAT-AACT-GGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
163672495 AGCCCTTTTTGATAAACTGGGGCAA
1 AGCCC-TTTTGATAAACTGGGGCAA
* *
163672520 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-GATAAACTGGGGCAA
163672545 AGCCCTTTT
1 AGCCCTTTT
163672554 AGCACTTCTC
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
22 1 0.02
23 10 0.19
24 8 0.15
25 33 0.63
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:163673421 original size:27 final size:26
Alignment explanation
Indices: 163673360--163673423 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 26
163673350 GGGCATATTC
163673360 GTCATTTTACCATACAGGGTATTACG
1 GTCATTTTACCATACAGGGTATTACG
* *
163673386 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACA-GGG-TATTACG
*
163673413 GTCTTTTTACC
1 GTCATTTTACC
163673424 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 14 0.44
27 17 0.53
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.36
Consensus pattern (26 bp):
GTCATTTTACCATACAGGGTATTACG
Found at i:163673507 original size:27 final size:27
Alignment explanation
Indices: 163673477--163673582 Score: 92
Period size: 27 Copynumber: 3.9 Consensus size: 27
163673467 GTAAATCTAC
163673477 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
163673504 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
163673530 AGAAAGTCAAGGGTATTT-TGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
163673559 AAATCAGGGGTATTTTGGTAATTT
1 AAACCAAGGGTATTTCAGTAATTT
163673583 ACAAATTGAG
Statistics
Matches: 66, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
26 12 0.18
27 32 0.48
28 11 0.17
29 11 0.17
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:163673572 original size:26 final size:27
Alignment explanation
Indices: 163673481--163673608 Score: 102
Period size: 26 Copynumber: 4.7 Consensus size: 27
163673471 ATCTACAAAC
* *
163673481 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCTGTAATTTTGTAAAT
* *
163673508 CAATGGTATTTCTATAATTTT-TAGAAAGT
1 CAAGGGTATTTCTGTAATTTTGT--AAA-T
163673537 CAAGGGTATTT-TGTAATTTTGTAAAT
1 CAAGGGTATTTCTGTAATTTTGTAAAT
* **
163673563 CAGGGGTATTT-TGGTAA-TTTACAAAT
1 CAAGGGTATTTCT-GTAATTTTGTAAAT
** *
163673589 TGAGGGTATTTCGGTAATTT
1 CAAGGGTATTTCTGTAATTT
163673609 CACAAACCAG
Statistics
Matches: 81, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
26 32 0.40
27 27 0.33
28 11 0.14
29 11 0.14
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTCTGTAATTTTGTAAAT
Found at i:163673785 original size:27 final size:27
Alignment explanation
Indices: 163673715--163673879 Score: 214
Period size: 27 Copynumber: 6.3 Consensus size: 27
163673705 AGAATTTCAC
163673715 AATCGA-GGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
163673741 AA-CTG-GGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
* * *
163673767 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* *
163673794 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
*
163673821 AATCGAGGGTAAAATAGTAA-TTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* *
163673847 AATCGAGGGTGAAACGGTAA-TTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
163673873 AATCGAG
1 AATCGAG
163673880 TGTACTTTGG
Statistics
Matches: 123, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
25 1 0.01
26 59 0.48
27 63 0.51
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:163673786 original size:53 final size:54
Alignment explanation
Indices: 163673721--163673876 Score: 203
Period size: 53 Copynumber: 2.9 Consensus size: 54
163673711 TCACAATCGA
163673721 GGTAAAATGGTAATTTTGTAAA-CTG-GGGTAAAATGGTAATTTTGTAAATCAAG
1 GGTAAAATGGTAATTTTGTAAATC-GAGGGTAAAATGGTAATTTTGTAAATCAAG
* * * * *
163673774 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAG
1 GGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAG
* * *
163673828 GGTAAAATAGTAA-TTTGTAAATCGAGGGTGAAACGGTAA-TTTGTAAATC
1 GGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATC
163673877 GAGTGTACTT
Statistics
Matches: 89, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
52 8 0.09
53 44 0.49
54 37 0.42
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.31
Consensus pattern (54 bp):
GGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAG
Found at i:163676357 original size:71 final size:71
Alignment explanation
Indices: 163676271--163676434 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
163676261 CGATTTGTCT
163676271 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
163676336 CTTTCA
66 CTTTCA
163676342 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
163676407 CTTTCA
66 CTTTCA
163676413 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
163676435 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:163676472 original size:71 final size:70
Alignment explanation
Indices: 163676271--163676468 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
163676261 CGATTTGTCT
* * * *
163676271 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
163676336 CTTTCA
65 CTTTCA
* * * *
163676342 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
163676407 CTTTCA
65 CTTTCA
* *
163676413 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
163676469 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:163684349 original size:39 final size:40
Alignment explanation
Indices: 163684226--163684391 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
163684216 AAATTGAATG
* * *
163684226 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * ***
163684265 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
163684305 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * *
163684344 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTAATT
163684384 ATATCCGG
1 ATATCCGG
163684392 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 44 0.42
40 55 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:163684358 original size:79 final size:79
Alignment explanation
Indices: 163684226--163684375 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
163684216 AAATTGAATG
*
163684226 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
163684291 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
163684305 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
163684368 ATTTGTGC
64 AATTGTGC
163684376 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:163687487 original size:40 final size:40
Alignment explanation
Indices: 163687421--163687586 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
163687411 AAATTGAATG
* * *
163687421 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
163687460 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
163687500 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * **
163687540 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGT-ATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
163687579 ATATCCGG
1 ATATCCGG
163687587 TTATATTCCA
Statistics
Matches: 105, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
39 26 0.25
40 77 0.73
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:163689145 original size:34 final size:34
Alignment explanation
Indices: 163689107--163689181 Score: 123
Period size: 34 Copynumber: 2.2 Consensus size: 34
163689097 TCATTCAACT
163689107 TTTCATTTCCAAAATAACACTATCTCAATTATGC
1 TTTCATTTCCAAAATAACACTATCTCAATTATGC
* *
163689141 TTTCATTTCGAATATAACACTATCTCAATTATGC
1 TTTCATTTCCAAAATAACACTATCTCAATTATGC
*
163689175 TTACATT
1 TTTCATT
163689182 CAAACATATA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.04, T:0.41
Consensus pattern (34 bp):
TTTCATTTCCAAAATAACACTATCTCAATTATGC
Found at i:163689401 original size:35 final size:35
Alignment explanation
Indices: 163689336--163689515 Score: 198
Period size: 35 Copynumber: 5.1 Consensus size: 35
163689326 TTATTACTTG
* * *
163689336 TATGGCCAAATACACATAGTTCATTATATCATCACA
1 TATGGCCGAATATACA-AGTTCAATATATCATCACA
* *
163689372 TATGGCCGAATATACAAGTACAATATATCATCATA
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
* * * *
163689407 TATGACCGAATATACAAGTTCTATAAAACATCACA
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
*** * * *
163689442 TGCAGTCGAATATTCAAGTTCAATATAACATCACA
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
* *
163689477 TGTGGCCAAATATACAAGTTCAATATATCATCACA
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
163689512 TATG
1 TATG
163689516 TACATATCTA
Statistics
Matches: 118, Mismatches: 26, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
35 104 0.88
36 14 0.12
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (35 bp):
TATGGCCGAATATACAAGTTCAATATATCATCACA
Found at i:163699743 original size:12 final size:12
Alignment explanation
Indices: 163699706--163699744 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
163699696 TACACGCCCA
*
163699706 TGTGCCAAGCCG
1 TGTGCCAGGCCG
163699718 TGTGCCAGGCCG
1 TGTGCCAGGCCG
* *
163699730 TGTGCTAGGTCG
1 TGTGCCAGGCCG
163699742 TGT
1 TGT
163699745 AACAGCCTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.10, C:0.26, G:0.38, T:0.26
Consensus pattern (12 bp):
TGTGCCAGGCCG
Found at i:163714360 original size:40 final size:40
Alignment explanation
Indices: 163714315--163714482 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
163714305 CGGAATACAA
163714315 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
163714355 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
163714395 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
163714435 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
163714475 CCGGATAT
1 CCGGATAT
163714483 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:163714455 original size:80 final size:80
Alignment explanation
Indices: 163714315--163714482 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
163714305 CGGAATACAA
* *
163714315 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
163714380 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
163714395 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
163714458 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
163714475 CCGGATAT
1 CCGGATAT
163714483 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:163717284 original size:14 final size:14
Alignment explanation
Indices: 163717267--163717293 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
163717257 ATTTTTATGG
163717267 AATGATTTCGTGAA
1 AATGATTTCGTGAA
163717281 AATGATTTCGTGA
1 AATGATTTCGTGA
163717294 CAATTTCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.37
Consensus pattern (14 bp):
AATGATTTCGTGAA
Found at i:163718429 original size:42 final size:41
Alignment explanation
Indices: 163718370--163718520 Score: 171
Period size: 42 Copynumber: 3.6 Consensus size: 41
163718360 GAGACTATGC
* *
163718370 GTAAGACCATATCTGGGATATGGCATCAATATGGGACTTCGA
1 GTAAGACCATATCTGGGATATGGCATCGATATGAGA-TTCGA
* * *
163718412 GTAAGACCATAACTGGGATATGGCATCGATGTGAGATTTCGT
1 GTAAGACCATATCTGGGATATGGCATCGATATGAGA-TTCGA
*
163718454 GTAAGACCATAGT-TGGGCTATTGGCATCGATATGAGATTAC-A
1 GTAAGACCATA-TCTGGGATA-TGGCATCGATATGAGATT-CGA
*
163718496 TGTAAGACCATATCTAGGATATGGC
1 -GTAAGACCATATCTGGGATATGGC
163718521 GTTGGTATGG
Statistics
Matches: 92, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
42 60 0.65
43 32 0.35
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (41 bp):
GTAAGACCATATCTGGGATATGGCATCGATATGAGATTCGA
Found at i:163724440 original size:46 final size:45
Alignment explanation
Indices: 163724373--163724539 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 45
163724363 CGCCCCTAAG
*
163724373 TGAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCG-GCATTCGCATCCATAAA
* * **
163724419 TGAACTCGGACTCAACTCAACGAGTTCGG-A-TCCCTAGTTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC-A--TCCAT-AAA
* * *
163724466 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCATCCATAAA
163724512 TGAACTC-GACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
163724540 ATGCTCAACC
Statistics
Matches: 101, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
43 3 0.03
44 2 0.02
45 22 0.22
46 37 0.37
47 33 0.33
49 2 0.02
50 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCATCCATAAA
Found at i:163724489 original size:93 final size:92
Alignment explanation
Indices: 163724374--163724541 Score: 284
Period size: 93 Copynumber: 1.8 Consensus size: 92
163724364 GCCCCTAAGT
163724374 GAACTCGGACTCAACTCAACGAGCTC-GAGCATTCGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAATGAACTC-GACTCAACTCA
163724438 ACGAGTTCGGATCCCTAGTTACATCTCAC
64 ACGAGTTCGGATCCCTAGTTACATCTCAC
* * *
163724467 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGACTCAACTCAAC
163724532 GAGTTCGGAT
66 GAGTTCGGAT
163724542 GCTCAACCAT
Statistics
Matches: 71, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
92 23 0.32
93 46 0.65
94 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGACTCAACTCAAC
GAGTTCGGATCCCTAGTTACATCTCAC
Found at i:163724996 original size:30 final size:30
Alignment explanation
Indices: 163724962--163725021 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
163724952 ATTTAATACG
163724962 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
163724992 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
163725022 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:163732682 original size:27 final size:27
Alignment explanation
Indices: 163732638--163732704 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
163732628 TTTAAAACCC
*
163732638 TAGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGTAATTTCGGTAATTTTGCTCTT
163732664 TAGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGTAATTTCGGTAATTTTGCTCTT
163732691 TAGGGGTAATTTCG
1 TA-GGGTAATTTCG
163732705 TGATCTACGC
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 6 0.16
27 21 0.55
28 11 0.29
ACGTcount: A:0.19, C:0.10, G:0.25, T:0.45
Consensus pattern (27 bp):
TAGGGTAATTTCGGTAATTTTGCTCTT
Found at i:163734352 original size:20 final size:20
Alignment explanation
Indices: 163734329--163734366 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
163734319 CACATCCAAA
*
163734329 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
163734349 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
163734367 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:163740688 original size:28 final size:28
Alignment explanation
Indices: 163740642--163740710 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
163740632 TTTAAAACCC
*
163740642 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
163740669 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
163740697 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
163740711 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:163749774 original size:17 final size:17
Alignment explanation
Indices: 163749749--163749804 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 17
163749739 AATCCTTAGT
*
163749749 TTTCTCTTTTATTTTTC
1 TTTCCCTTTTATTTTTC
163749766 TTTCCC-----TTTTTC
1 TTTCCCTTTTATTTTTC
*
163749778 TTTCTCTTTTATTTTTC
1 TTTCCCTTTTATTTTTC
163749795 TTTCCCTTTT
1 TTTCCCTTTT
163749805 TCTTTCTCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
12 11 0.35
17 20 0.65
ACGTcount: A:0.04, C:0.23, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTCCCTTTTATTTTTC
Found at i:163749780 original size:6 final size:6
Alignment explanation
Indices: 163749748--163749819 Score: 56
Period size: 6 Copynumber: 12.0 Consensus size: 6
163749738 AAATCCTTAG
* ** * *
163749748 TTTTCT CTTTTAT TTTTCT TTCCCT TTTTCT TTCTC- TTTTAT TTTTCT
1 TTTTCT -TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
** *
163749796 TTCCCT TTTTCT TTCTCT TTTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT
163749820 CCCCTGCTTC
Statistics
Matches: 48, Mismatches: 16, Indels: 3
0.72 0.24 0.04
Matches are distributed among these distances:
5 3 0.06
6 40 0.83
7 5 0.10
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.74
Consensus pattern (6 bp):
TTTTCT
Found at i:163749783 original size:29 final size:29
Alignment explanation
Indices: 163749749--163749816 Score: 136
Period size: 29 Copynumber: 2.3 Consensus size: 29
163749739 AATCCTTAGT
163749749 TTTCTCTTTTATTTTTCTTTCCCTTTTTC
1 TTTCTCTTTTATTTTTCTTTCCCTTTTTC
163749778 TTTCTCTTTTATTTTTCTTTCCCTTTTTC
1 TTTCTCTTTTATTTTTCTTTCCCTTTTTC
163749807 TTTCTCTTTT
1 TTTCTCTTTT
163749817 TCTCCCCTGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.74
Consensus pattern (29 bp):
TTTCTCTTTTATTTTTCTTTCCCTTTTTC
Found at i:163751001 original size:1 final size:1
Alignment explanation
Indices: 163750991--163751071 Score: 72
Period size: 1 Copynumber: 81.0 Consensus size: 1
163750981 GGCCTCTCCA
* * * * * * * * *
163750991 TTTTTCTTTTTTTTTTTCTTTTTTTTTCTCTTTTTCTTTTCTTTTGTTTTCTTTTTTTTCTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
163751056 TTTTCTTTTTTTTTTT
1 TTTTTTTTTTTTTTTT
163751072 GAAATAGAAG
Statistics
Matches: 60, Mismatches: 20, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.00, C:0.11, G:0.01, T:0.88
Consensus pattern (1 bp):
T
Found at i:163751012 original size:10 final size:10
Alignment explanation
Indices: 163750999--163751069 Score: 99
Period size: 10 Copynumber: 6.9 Consensus size: 10
163750989 CATTTTTCTT
163750999 TTTTTTTTTC
1 TTTTTTTTTC
163751009 TTTTTTTTTCTC
1 -TTTTTTTT-TC
163751021 TTTTTCTTTTC
1 TTTTT-TTTTC
*
163751032 TTTTGTTTTC
1 TTTTTTTTTC
163751042 -TTTTTTTTC
1 TTTTTTTTTC
163751051 TTTTTTTTTC
1 TTTTTTTTTC
163751061 TTTTTTTTT
1 TTTTTTTTT
163751070 TTGAAATAGA
Statistics
Matches: 55, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
9 8 0.15
10 23 0.42
11 19 0.35
12 5 0.09
ACGTcount: A:0.00, C:0.11, G:0.01, T:0.87
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:163751178 original size:1 final size:1
Alignment explanation
Indices: 163751153--163751209 Score: 51
Period size: 1 Copynumber: 57.0 Consensus size: 1
163751143 CTTGACCGAG
* * * * * * *
163751153 TTTTGTTTTCTTTTTGTTTTCTTTTTTTTCTTTTTTTTCTTTTTTTCTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
163751210 GAAATAGAAG
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.00, C:0.09, G:0.04, T:0.88
Consensus pattern (1 bp):
T
Found at i:163751186 original size:8 final size:9
Alignment explanation
Indices: 163751153--163751207 Score: 76
Period size: 9 Copynumber: 5.9 Consensus size: 9
163751143 CTTGACCGAG
163751153 TTTTGTTTTC
1 TTTT-TTTTC
163751163 TTTTTGTTTTC
1 -TTTT-TTTTC
163751174 TTTTTTTTC
1 TTTTTTTTC
163751183 TTTTTTTTC
1 TTTTTTTTC
163751192 -TTTTTTTC
1 TTTTTTTTC
163751200 TTTTTTTT
1 TTTTTTTT
163751208 TTGAAATAGA
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.19
9 21 0.49
10 4 0.09
11 10 0.23
ACGTcount: A:0.00, C:0.09, G:0.04, T:0.87
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:163751189 original size:17 final size:18
Alignment explanation
Indices: 163751153--163751207 Score: 76
Period size: 17 Copynumber: 2.9 Consensus size: 18
163751143 CTTGACCGAG
163751153 TTTTGTTTTCTTTTTGTTTTC
1 TTTT-TTTTC-TTTT-TTTTC
163751174 TTTTTTTTCTTTTTTTTC
1 TTTTTTTTCTTTTTTTTC
163751192 -TTTTTTTCTTTTTTTT
1 TTTTTTTTCTTTTTTTT
163751208 TTGAAATAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.47
18 5 0.15
19 4 0.12
20 5 0.15
21 4 0.12
ACGTcount: A:0.00, C:0.09, G:0.04, T:0.87
Consensus pattern (18 bp):
TTTTTTTTCTTTTTTTTC
Found at i:163751237 original size:138 final size:142
Alignment explanation
Indices: 163751010--163751291 Score: 500
Period size: 138 Copynumber: 2.0 Consensus size: 142
163751000 TTTTTTTTCT
*
163751010 TTTTTTTTCTCTTTTTCTTTTCTTTTGTTTTCTTTTTTTTCTTTTTTTTTCTTTTTTTTTTTGAA
1 TTTTGTTTCTCTTTTTCTTTTCTTTTGTTTTCTTTTTTTTC-TTTTTTTTCTTTTTTTTTTTGAA
*
163751075 ATAGAAGTCCCAAAGTGCCTTTTGCGAGTTTTCACCTTGGCTTCCCTTCTCCTTCATACAAAGTA
65 ATAGAAGTCCCAAAGTGCCCTTTGCGAGTTTTCACCTTGGCTTCCCTTCTCCTTCATACAAAGTA
163751140 CTCCTTGACCGAG
130 CTCCTTGACCGAG
*
163751153 TTTTGTTT-TCTTTTTGTTTTCTTTT-TTTTCTTTTTTTTC-TTTTTTTC-TTTTTTTTTTGAAA
1 TTTTGTTTCTCTTTTTCTTTTCTTTTGTTTTCTTTTTTTTCTTTTTTTTCTTTTTTTTTTTGAAA
163751214 TAGAAGTCCCAAAGTGCCCTTTGCGAGTTTTCACCTTGGCTTCCCTTCTCCTTCATACAAAGTAC
66 TAGAAGTCCCAAAGTGCCCTTTGCGAGTTTTCACCTTGGCTTCCCTTCTCCTTCATACAAAGTAC
163751279 TCCTTGACCGAG
131 TCCTTGACCGAG
163751291 T
1 T
163751292 CCAAATTCAC
Statistics
Matches: 136, Mismatches: 3, Indels: 5
0.94 0.02 0.03
Matches are distributed among these distances:
138 91 0.67
139 8 0.06
141 14 0.10
142 16 0.12
143 7 0.05
ACGTcount: A:0.13, C:0.21, G:0.11, T:0.55
Consensus pattern (142 bp):
TTTTGTTTCTCTTTTTCTTTTCTTTTGTTTTCTTTTTTTTCTTTTTTTTCTTTTTTTTTTTGAAA
TAGAAGTCCCAAAGTGCCCTTTGCGAGTTTTCACCTTGGCTTCCCTTCTCCTTCATACAAAGTAC
TCCTTGACCGAG
Found at i:163755347 original size:29 final size:29
Alignment explanation
Indices: 163755315--163755446 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
163755305 ATAGTGAATC
163755315 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
163755344 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
163755374 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
163755403 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
163755432 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
163755447 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:163755456 original size:59 final size:59
Alignment explanation
Indices: 163755315--163755446 Score: 239
Period size: 59 Copynumber: 2.3 Consensus size: 59
163755305 ATAGTGAATC
163755315 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
* *
163755374 CGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
163755432 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
163755447 GTACAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 24 0.34
59 47 0.66
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:163755931 original size:2 final size:2
Alignment explanation
Indices: 163755924--163755954 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
163755914 CATACTTATG
163755924 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
163755955 GGGCATCACG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:163756824 original size:19 final size:18
Alignment explanation
Indices: 163756800--163756835 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
163756790 CCCCCTTTTT
*
163756800 CTTTTCTTATTTTATTCCC
1 CTTTTCTT-TTTAATTCCC
163756819 CTTTTCTTTTTAATTCC
1 CTTTTCTTTTTAATTCC
163756836 TTTCTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.11, C:0.25, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTTTCTTTTTAATTCCC
Found at i:163763208 original size:12 final size:12
Alignment explanation
Indices: 163763191--163763216 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
163763181 AATATTTGTG
163763191 GAAGGAGATCCA
1 GAAGGAGATCCA
163763203 GAAGGAGATCCA
1 GAAGGAGATCCA
163763215 GA
1 GA
163763217 GATGGCAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.35, T:0.08
Consensus pattern (12 bp):
GAAGGAGATCCA
Found at i:163767058 original size:12 final size:12
Alignment explanation
Indices: 163767041--163767066 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
163767031 AATATTTGTG
163767041 GAAGGAGATCCA
1 GAAGGAGATCCA
163767053 GAAGGAGATCCA
1 GAAGGAGATCCA
163767065 GA
1 GA
163767067 GATGGCAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.35, T:0.08
Consensus pattern (12 bp):
GAAGGAGATCCA
Found at i:163777899 original size:39 final size:40
Alignment explanation
Indices: 163777811--163777976 Score: 214
Period size: 39 Copynumber: 4.2 Consensus size: 40
163777801 TGAATGATAC
* * *
163777811 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
163777851 CCGGGCTAAGACCCGAAGGCA-TTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
163777890 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA-
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
163777929 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
163777969 CC-GGCTAA
1 CCGGGCTAA
163777977 ATTCCGAAGA
Statistics
Matches: 112, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
39 72 0.64
40 40 0.36
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:163777954 original size:79 final size:79
Alignment explanation
Indices: 163777811--163777976 Score: 221
Period size: 79 Copynumber: 2.1 Consensus size: 79
163777801 TGAATGATAC
* * *
163777811 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTGT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATATCCGGGCTAAGACCCGAAGGCATTGT
*
163777876 GCGAGTTGTTATAT
66 GCGAGTGGTTATAT
* *
163777890 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATA-CCGGGTTAAGACCCGAAGGCAATT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATATCCGGGCTAAGACCCGAAGGC-ATT
**
163777953 GTGCTTGTGGTTATAT
64 GTGCGAGTGGTTATAT
163777969 CC-GGCTAA
1 CCGGGCTAA
163777977 ATTCCGAAGA
Statistics
Matches: 77, Mismatches: 8, Indels: 5
0.86 0.09 0.06
Matches are distributed among these distances:
78 25 0.32
79 50 0.65
80 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATATCCGGGCTAAGACCCGAAGGCATTGT
GCGAGTGGTTATAT
Found at i:163785932 original size:40 final size:40
Alignment explanation
Indices: 163785826--163786032 Score: 294
Period size: 40 Copynumber: 5.2 Consensus size: 40
163785816 TGAATGATAC
* * *
163785826 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
163785866 CCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
163785905 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
163785945 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
163785985 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
163786025 CC-GGCTAA
1 CCGGGCTAA
163786033 ATTCCGAAGA
Statistics
Matches: 152, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 39 0.26
40 113 0.74
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:163789255 original size:30 final size:32
Alignment explanation
Indices: 163789221--163789279 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 32
163789211 TTGAATTTTT
*
163789221 ATACATACTTGTA-CC-ATCGTACCAATTTCC
1 ATACATACATGTACCCTATCGTACCAATTTCC
*
163789251 ATACATACATGTACCCTCTCGTACCAATT
1 ATACATACATGTACCCTATCGTACCAATT
163789280 CTCATACTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 12 0.48
31 2 0.08
32 11 0.44
ACGTcount: A:0.31, C:0.31, G:0.07, T:0.32
Consensus pattern (32 bp):
ATACATACATGTACCCTATCGTACCAATTTCC
Found at i:163789467 original size:56 final size:56
Alignment explanation
Indices: 163789349--163789467 Score: 139
Period size: 56 Copynumber: 2.1 Consensus size: 56
163789339 TGCCAAACCT
* * * * * * *
163789349 GATACCTCACACACTAAGTGTCGTTCTGGATGTTTCATACACTAAGTGCCGTCCTC
1 GATACTTCACACACTAAGTGCCATTCTGGATGTATCATACACAAAGTGCCATCCCC
* * * *
163789405 GTTACTTCGCACACTAAGTGCCATTCTGGATGTATCGTTCACAAAGTGCCATCCCC
1 GATACTTCACACACTAAGTGCCATTCTGGATGTATCATACACAAAGTGCCATCCCC
163789461 GATACTT
1 GATACTT
163789468 TGTACGTTAA
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.30
Consensus pattern (56 bp):
GATACTTCACACACTAAGTGCCATTCTGGATGTATCATACACAAAGTGCCATCCCC
Found at i:163805542 original size:47 final size:47
Alignment explanation
Indices: 163805473--163805567 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
163805463 ACAACATTCG
*
163805473 AGGTAAGTCTTCGAGTAATGAAACTTAGTTTATGATTTGATTAAGTC
1 AGGTAAGTCTTCGAGTAATGAAACTTAGTTTATGATTCGATTAAGTC
163805520 AGGTAAGTCTTCGAGTAATGAAACTTAGTTTATGATTCGATTAAGTC
1 AGGTAAGTCTTCGAGTAATGAAACTTAGTTTATGATTCGATTAAGTC
163805567 A
1 A
163805568 TGTCATATAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (47 bp):
AGGTAAGTCTTCGAGTAATGAAACTTAGTTTATGATTCGATTAAGTC
Found at i:163805859 original size:40 final size:40
Alignment explanation
Indices: 163805804--163806024 Score: 311
Period size: 40 Copynumber: 5.5 Consensus size: 40
163805794 TATTCGAATG
* *
163805804 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
163805844 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
163805884 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * * *
163805924 ATATCCGGGCTAAGTCCCGAAAGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * * *
163805964 ATATCCGGGCTAAGACCCGAAGGCATTTGCGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATT
*
163806004 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
163806025 ATACTTGGGT
Statistics
Matches: 164, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
39 13 0.08
40 149 0.91
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:163814040 original size:37 final size:39
Alignment explanation
Indices: 163813979--163814061 Score: 145
Period size: 37 Copynumber: 2.2 Consensus size: 39
163813969 ACATTCGAGG
163813979 TAAGTC-TTCGAGTAATGAAACTTAGTTTATGATTTGAT
1 TAAGTCATTCGAGTAATGAAACTTAGTTTATGATTTGAT
163814017 TAAGTCATT-GAGT-ATGAAACTTAGTTTATGATTTGAT
1 TAAGTCATTCGAGTAATGAAACTTAGTTTATGATTTGAT
163814054 TAAGTCAT
1 TAAGTCAT
163814062 GTCATAAAGC
Statistics
Matches: 44, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
37 32 0.73
38 10 0.23
39 2 0.05
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.42
Consensus pattern (39 bp):
TAAGTCATTCGAGTAATGAAACTTAGTTTATGATTTGAT
Found at i:163814351 original size:40 final size:40
Alignment explanation
Indices: 163814296--163814518 Score: 332
Period size: 40 Copynumber: 5.7 Consensus size: 40
163814286 TATTCGAATG
* *
163814296 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
163814336 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
163814376 ATATCCGGGCTAAGT-CCGAAGGCA-TT-T-CTA--GATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
163814410 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
163814450 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
163814490 ATATCCGGGCTAAGACCCGAAGGCATTTG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTG
163814519 CGAGTTGCTA
Statistics
Matches: 169, Mismatches: 8, Indels: 12
0.89 0.04 0.06
Matches are distributed among these distances:
34 19 0.11
35 8 0.05
36 5 0.03
37 2 0.01
38 5 0.03
39 9 0.05
40 121 0.72
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:163814496 original size:114 final size:117
Alignment explanation
Indices: 163814296--163814549 Score: 390
Period size: 114 Copynumber: 2.2 Consensus size: 117
163814286 TATTCGAATG
*
163814296 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
* * *
163814361 TTTGTGCTATTGATTATATCCGGGCTAAG-TCCGAAGGCATTT-CTAGAT-T
66 TTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCATTTGCGAGATCT
* * *
163814410 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
*
163814475 TTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCATTTGCGAGTTGCT
66 TTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCATTTGCGAGAT-CT
*
163814528 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
163814550 TACTTGGGTT
Statistics
Matches: 127, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
114 89 0.70
115 12 0.09
116 4 0.03
117 15 0.12
118 7 0.06
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.30
Consensus pattern (117 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCATTTGCGAGATCT
Found at i:163826011 original size:24 final size:25
Alignment explanation
Indices: 163825969--163826021 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
163825959 TTTTCTTTCT
163825969 ATATTATTAATATTATTT-ATTTAA
1 ATATTATTAATATTATTTAATTTAA
*
163825993 ATATTATTAATA-TATTTTAATTTAT
1 ATATTATTAATATTA-TTTAATTTAA
163826018 ATAT
1 ATAT
163826022 ATTTAAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 2 0.08
24 15 0.58
25 9 0.35
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
ATATTATTAATATTATTTAATTTAA
Found at i:163826024 original size:24 final size:23
Alignment explanation
Indices: 163825968--163826037 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 23
163825958 ATTTTCTTTC
163825968 TATAT-TATTAATATTATTTATT
1 TATATATATTAATATTATTTATT
*
163825990 TAAATATTATTAATA-TATTTTAATT
1 TATATA-TATTAATATTA-TTT-ATT
*
163826015 TATATATATTTAA-ATTATATATT
1 TATATATA-TTAATATTATTTATT
163826038 GAAATGATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 11
0.74 0.06 0.21
Matches are distributed among these distances:
22 4 0.10
23 5 0.13
24 16 0.41
25 14 0.36
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
TATATATATTAATATTATTTATT
Found at i:163826032 original size:15 final size:14
Alignment explanation
Indices: 163826002--163826037 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
163825992 AATATTATTA
*
163826002 ATATATTTTAATTT
1 ATATATTTTAAATT
163826016 ATATATATTTAAATT
1 ATATAT-TTTAAATT
163826031 ATATATT
1 ATATATT
163826038 GAAATGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
ATATATTTTAAATT
Found at i:163826248 original size:21 final size:21
Alignment explanation
Indices: 163826208--163826246 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
163826198 AAATCATGGA
163826208 TAAATCCAAGCGACTCTTTCT
1 TAAATCCAAGCGACTCTTTCT
163826229 TAAATCCAAGCGA-TCTTT
1 TAAATCCAAGCGACTCTTT
163826247 TCGTAGGCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (21 bp):
TAAATCCAAGCGACTCTTTCT
Found at i:163828790 original size:12 final size:12
Alignment explanation
Indices: 163828773--163828797 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
163828763 ATTTTATAAC
163828773 ATAAATATTGTT
1 ATAAATATTGTT
163828785 ATAAATATTGTT
1 ATAAATATTGTT
163828797 A
1 A
163828798 ATAGCCTCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
ATAAATATTGTT
Found at i:163840556 original size:13 final size:15
Alignment explanation
Indices: 163840530--163840569 Score: 66
Period size: 13 Copynumber: 2.8 Consensus size: 15
163840520 CCTTAATTTA
163840530 TTAATATTTATTAAT
1 TTAATATTTATTAAT
163840545 TTAAT-TTT-TTAAT
1 TTAATATTTATTAAT
163840558 TTAATATTTATT
1 TTAATATTTATT
163840570 TAATAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.43
14 6 0.26
15 7 0.30
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTAATATTTATTAAT
Found at i:163843356 original size:14 final size:14
Alignment explanation
Indices: 163843337--163843365 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
163843327 ACAGATGGAT
163843337 TCGTATAATTCTTA
1 TCGTATAATTCTTA
163843351 TCGTATAATTCTTA
1 TCGTATAATTCTTA
163843365 T
1 T
163843366 ATATATTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52
Consensus pattern (14 bp):
TCGTATAATTCTTA
Found at i:163847598 original size:20 final size:21
Alignment explanation
Indices: 163847532--163847600 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
163847522 TCACTTCGTT
163847532 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
163847553 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
* * *
163847574 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
163847595 -CTTTTT
1 TCTTTTT
163847601 TCTTTGTGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.12, C:0.25, G:0.09, T:0.55
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:163849999 original size:18 final size:18
Alignment explanation
Indices: 163849966--163850059 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
163849956 AAGGTTTTCT
163849966 TATTGATGATA-T--CGA
1 TATTGATGATAGTGACGA
163849981 TATTGATGATAGTGACGA
1 TATTGATGATAGTGACGA
*
163849999 TATTGATGCTAGTGACGA
1 TATTGATGATAGTGACGA
* *
163850017 TATTGATGCTAGTGACGC
1 TATTGATGATAGTGACGA
*
163850035 TATTGATGATAGTGACGC
1 TATTGATGATAGTGACGA
163850053 TATTGAT
1 TATTGAT
163850060 CGTGACCTTG
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.36
Consensus pattern (18 bp):
TATTGATGATAGTGACGA
Found at i:163858327 original size:14 final size:14
Alignment explanation
Indices: 163858308--163858335 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
163858298 TATATTAGTA
163858308 TTTTCTATTCTATT
1 TTTTCTATTCTATT
163858322 TTTTCTATTCTATT
1 TTTTCTATTCTATT
163858336 AGTATTAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTCTATTCTATT
Found at i:163858343 original size:6 final size:6
Alignment explanation
Indices: 163858332--163858410 Score: 66
Period size: 5 Copynumber: 14.2 Consensus size: 6
163858322 TTTTCTATTC
* *
163858332 TATTAG TATTAGAG TATTAG -ATTAG TATT-C TATT-C TATTAG TATTAG
1 TATTAG TATT--AG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
163858379 -ATTAG TATTAG --TTAG -ATTAG -ATTAG TATTAG T
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG T
163858411 TAGTGATCCC
Statistics
Matches: 64, Mismatches: 2, Indels: 14
0.80 0.03 0.17
Matches are distributed among these distances:
4 4 0.06
5 28 0.44
6 26 0.41
8 6 0.09
ACGTcount: A:0.33, C:0.03, G:0.16, T:0.48
Consensus pattern (6 bp):
TATTAG
Found at i:163858358 original size:11 final size:11
Alignment explanation
Indices: 163858333--163858414 Score: 50
Period size: 11 Copynumber: 7.5 Consensus size: 11
163858323 TTTCTATTCT
163858333 ATTAGTATTAG
1 ATTAGTATTAG
163858344 ---AGTATTAG
1 ATTAGTATTAG
**
163858352 ATTAGTATTCT
1 ATTAGTATTAG
*
163858363 ATT-CTATTAG
1 ATTAGTATTAG
163858373 TATTAG-ATTAG
1 -ATTAGTATTAG
163858384 TATTAGTTAGATTAG
1 -ATTAG-T--ATTAG
163858399 ATTAGTATTAG
1 ATTAGTATTAG
163858410 -TTAGT
1 ATTAGT
163858415 GATCCCGGCT
Statistics
Matches: 56, Mismatches: 6, Indels: 19
0.69 0.07 0.23
Matches are distributed among these distances:
8 8 0.14
10 9 0.16
11 28 0.50
13 1 0.02
14 5 0.09
15 5 0.09
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (11 bp):
ATTAGTATTAG
Found at i:163858399 original size:20 final size:21
Alignment explanation
Indices: 163858369--163858414 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
163858359 TTCTATTCTA
163858369 TTAGTATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
163858390 TTAG-ATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
163858410 TTAGT
1 TTAGT
163858415 GATCCCGGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.48
Consensus pattern (21 bp):
TTAGTATTAGATTAGTATTAG
Found at i:163867460 original size:40 final size:39
Alignment explanation
Indices: 163867295--163867478 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
163867285 AAATTGAATG
* * *
163867295 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
163867335 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
163867375 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
163867415 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
163867454 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
163867479 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:163867503 original size:80 final size:81
Alignment explanation
Indices: 163867335--163867523 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
163867325 GCTGGAAATT
* * * *
163867335 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
163867400 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
163867416 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
163867479 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
163867495 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
163867524 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:163875551 original size:40 final size:39
Alignment explanation
Indices: 163875386--163875569 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
163875376 AAATTGAATG
* * *
163875386 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
163875426 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
163875466 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
163875506 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
163875545 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
163875570 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:163875594 original size:80 final size:81
Alignment explanation
Indices: 163875426--163875614 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
163875416 GCTGGAAATT
* * * *
163875426 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
163875491 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
163875507 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
163875570 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
163875586 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
163875615 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:163878199 original size:40 final size:40
Alignment explanation
Indices: 163878094--163878310 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
163878084 CGGATGATAA
* *
163878094 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
163878134 TCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
163878173 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
163878213 CCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
163878253 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
163878293 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
163878311 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 12, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
39 50 0.31
40 112 0.69
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:163878262 original size:80 final size:80
Alignment explanation
Indices: 163878090--163878316 Score: 309
Period size: 79 Copynumber: 2.9 Consensus size: 80
163878080 TATTCGGATG
* * *
163878090 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTTCGGGCTAAG-CCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA-TCCGGGCTAAGTCCCGAAGGC
*
163878153 ATTTGTGCGAGTTACT
65 ACTTGTGCGAGTTACT
* * *
163878169 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
163878234 CTTGTGCGAGTTACT
66 CTTGTGCGAGTTACT
* * * *
163878249 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCC-GGCTAAATTCCGAAGGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CTATATCCGGGCTAAGTCCCGAAGGC
163878312 ACTTG
65 ACTTG
163878317 GTTTGGGAAT
Statistics
Matches: 132, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
79 68 0.52
80 64 0.48
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
CTTGTGCGAGTTACT
Found at i:163878308 original size:119 final size:119
Alignment explanation
Indices: 163878090--163878310 Score: 313
Period size: 119 Copynumber: 1.9 Consensus size: 119
163878080 TATTCGGATG
* * **
163878090 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTTCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* * *
163878155 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TTGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACT
*
163878209 ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
*
163878273 ATTTGAGCAAG-TAGCTATATCC-GGCTAAATTCCGAAGG
64 ATTTGAGCAAGTTA-CTATATCCGGGCTAAATCCCGAAGG
163878311 TACTTGGTTT
Statistics
Matches: 90, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
118 2 0.02
119 62 0.69
120 26 0.29
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACT
Found at i:163886613 original size:40 final size:40
Alignment explanation
Indices: 163886471--163886606 Score: 236
Period size: 40 Copynumber: 3.4 Consensus size: 40
163886461 ATAGCAGCTC
* * * *
163886471 GCACGAATGCCTTCGGGACTTAGCCCAGACATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTA
163886511 GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTA
163886551 GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTA
163886591 GCACAAATGCCTTCGG
1 GCACAAATGCCTTCGG
163886607 ATCTTAGTCC
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 92 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTA
Found at i:163890178 original size:16 final size:17
Alignment explanation
Indices: 163890157--163890189 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
163890147 GAGTTGTAAC
163890157 AATCTC-GAAACCCAAA
1 AATCTCAGAAACCCAAA
*
163890173 AATCTCAGAATCCCAAA
1 AATCTCAGAAACCCAAA
163890190 CTTTCTTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.48, C:0.30, G:0.06, T:0.15
Consensus pattern (17 bp):
AATCTCAGAAACCCAAA
Found at i:163891703 original size:29 final size:29
Alignment explanation
Indices: 163891684--163891747 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
163891674 TGCATTTGAT
163891684 TTGGGCCTAATGGACCATATGAATGTGAA
1 TTGGGCCTAATGGACCATATGAATGTGAA
* * * *
163891713 TTGGGCCTCATGGGCCATATAAATGAG-A
1 TTGGGCCTAATGGACCATATGAATGTGAA
163891741 TTGGGCC
1 TTGGGCC
163891748 AAGTAGGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 8 0.26
29 23 0.74
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (29 bp):
TTGGGCCTAATGGACCATATGAATGTGAA
Found at i:163894180 original size:32 final size:32
Alignment explanation
Indices: 163894139--163894202 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
163894129 CATTCAAAAT
163894139 TTCCATAAAACCAATCCATGAATATCCACTAA
1 TTCCATAAAACCAATCCATGAATATCCACTAA
163894171 TTCCATAAAACCAATCCATGAATATCCACTAA
1 TTCCATAAAACCAATCCATGAATATCCACTAA
163894203 CTATATAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.44, C:0.28, G:0.03, T:0.25
Consensus pattern (32 bp):
TTCCATAAAACCAATCCATGAATATCCACTAA
Found at i:163894211 original size:32 final size:32
Alignment explanation
Indices: 163894142--163894211 Score: 113
Period size: 32 Copynumber: 2.2 Consensus size: 32
163894132 TCAAAATTTC
* *
163894142 CATAAAACCAATCCATGAATATCCACTAATTC
1 CATAAAACCAATCCATGAATATCCACTAACTA
163894174 CATAAAACCAATCCATGAATATCCACTAACTA
1 CATAAAACCAATCCATGAATATCCACTAACTA
*
163894206 TATAAA
1 CATAAA
163894212 TTGTGTATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.47, C:0.26, G:0.03, T:0.24
Consensus pattern (32 bp):
CATAAAACCAATCCATGAATATCCACTAACTA
Found at i:163897352 original size:25 final size:25
Alignment explanation
Indices: 163897318--163897368 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
163897308 CTTGGAAAGA
163897318 TGGCCGAACCTAAGTTTTATCTCTT
1 TGGCCGAACCTAAGTTTTATCTCTT
163897343 TGGCCGAACCTAAGTTTTATCTCTT
1 TGGCCGAACCTAAGTTTTATCTCTT
163897368 T
1 T
163897369 CTTTTGTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.41
Consensus pattern (25 bp):
TGGCCGAACCTAAGTTTTATCTCTT
Found at i:163899884 original size:40 final size:40
Alignment explanation
Indices: 163899825--163899966 Score: 117
Period size: 40 Copynumber: 3.5 Consensus size: 40
163899815 AAATTGAATG
* *
163899825 ATATCCGGGCTAA-ATCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGA-CCCGAAGACAATTATGCTAGAAACT
* * * ***
163899865 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
163899905 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
163899945 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
163899967 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.03
40 82 0.95
41 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:163899967 original size:40 final size:39
Alignment explanation
Indices: 163899864--163899992 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
163899854 TGCTGGAAAT
* * *
163899864 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
163899904 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
163899944 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
163899984 TATATCCGG
1 TATATCCGG
163899993 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:163907863 original size:40 final size:40
Alignment explanation
Indices: 163907797--163907963 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
163907787 AAATTGAATG
* * *
163907797 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
163907836 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
163907876 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
163907916 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
163907956 ATATCCGG
1 ATATCCGG
163907964 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:163913193 original size:58 final size:59
Alignment explanation
Indices: 163913102--163913222 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
163913092 GGGAGGGACA
* *
163913102 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
* *
163913160 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
163913219 GGGA
1 GGGA
163913223 TTGGGAGGGA
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 51 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:163913285 original size:23 final size:23
Alignment explanation
Indices: 163913258--163913305 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
163913248 GTGTATCCCG
* * *
163913258 GGATGGCTCGCCGGATCATCGCC
1 GGATGGATCGCCGGAGCACCGCC
*
163913281 GGATGGATCGTCGGAGCACCGCC
1 GGATGGATCGCCGGAGCACCGCC
163913304 GG
1 GG
163913306 GAACCTAACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.15, C:0.31, G:0.40, T:0.15
Consensus pattern (23 bp):
GGATGGATCGCCGGAGCACCGCC
Found at i:163913952 original size:171 final size:172
Alignment explanation
Indices: 163913662--163914005 Score: 477
Period size: 171 Copynumber: 2.0 Consensus size: 172
163913652 TTTTAATTGA
* * *
163913662 AAATTTTTTCTGTTGGCCCAAAAAAATACAAGAAGCCGAATGAAATATGGCATGATGGCACGGTA
1 AAATTTTTTCTGTTGGCCCAAAAAAATACAAGAA--CGAATG-AACATGGCATGACGGCACGGCA
* * *
163913727 GATAATTGAACAAGTGCCGGGCCGCCAACAGTTGGGAGCTCGCACTCGCACCACCACGGCCCCCG
63 GAAAATTGAACAAGTGCCGGG-CGCCAACACTTGGGAGCTCGCACCCGCACCACCACGGCCCCCG
163913792 TTGTG-C-TGTTTCCCGAGGGGGCGGCACGGCCAAGTGTTTAACTTAG
127 TTGTGCCATGTTT-CCG-GGGGGCGGCACGGCCAAGTGTTTAACTTAG
* *
163913838 AAATTTTTTCTGTTGGCCCAAAACAAATACAAG-A-GTATG-GCATGGCATGGCACGGCACGGCA
1 AAATTTTTTCTGTTGGCCCAAAA-AAATACAAGAACGAATGAACATGGCAT-G-ACGGCACGGCA
163913900 GAAAATTGAACAAGTGCCCGGG-G-CAACACTTGGGAGCTCGCACCCGCACCACCACGGCCCCCG
63 GAAAATTGAACAAGTG-CCGGGCGCCAACACTTGGGAGCTCGCACCCGCACCACCACGGCCCCCG
163913963 TTGTGCCATGTTTCCGGGGGGCGGCACGGCCAAGTGTTTAACT
127 TTGTGCCATGTTTCCGGGGGGCGGCACGGCCAAGTGTTTAACT
163914006 AACTCCTTAC
Statistics
Matches: 154, Mismatches: 8, Indels: 17
0.86 0.04 0.09
Matches are distributed among these distances:
171 77 0.50
172 6 0.04
173 33 0.21
174 5 0.03
176 24 0.16
177 9 0.06
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.20
Consensus pattern (172 bp):
AAATTTTTTCTGTTGGCCCAAAAAAATACAAGAACGAATGAACATGGCATGACGGCACGGCAGAA
AATTGAACAAGTGCCGGGCGCCAACACTTGGGAGCTCGCACCCGCACCACCACGGCCCCCGTTGT
GCCATGTTTCCGGGGGGCGGCACGGCCAAGTGTTTAACTTAG
Found at i:163921729 original size:41 final size:41
Alignment explanation
Indices: 163921596--163921874 Score: 233
Period size: 43 Copynumber: 6.6 Consensus size: 41
163921586 TTTCTTTAGC
* ** *
163921596 CCGCACATCCGAGCCACC-AGGTGCCCCTGCTGCTCGAGGCAC
1 CCGCACATCCAAG-CACCAAGGTGCCAATGCTGCTCGAGGC-T
* * * * *
163921638 CCGCATATCCAA-CGTCCTAGGTTGCCGATGGTG-TCTGAGGCT
1 CCGCACATCCAAGC-ACCAAGG-TGCCAATGCTGCTC-GAGGCT
*
163921680 CCAGCACATCCAATCACCAAGGTGCCAATGCTGCTCGAGGCT
1 CC-GCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
*
163921722 TCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
1 CCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
* * *
163921763 CCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCT
1 -CCGCACATCCAA-GCACCAAGGTGCCAATGCTGCTCGAGGCT
* ** * * * *
163921806 CCCGCA-AGACCAAGGGCCGAGGTTGCCGATGGTGTTCGAGGCT
1 -CCGCACA-TCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCT
163921849 CCCGCACATCCAAGCACCAAGGTGCC
1 -CCGCACATCCAAGCACCAAGGTGCC
163921875 GATGGTACCC
Statistics
Matches: 197, Mismatches: 28, Indels: 24
0.79 0.11 0.10
Matches are distributed among these distances:
40 1 0.01
41 40 0.20
42 55 0.28
43 99 0.50
44 2 0.01
ACGTcount: A:0.21, C:0.36, G:0.27, T:0.16
Consensus pattern (41 bp):
CCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
Found at i:163921774 original size:126 final size:127
Alignment explanation
Indices: 163921595--163922579 Score: 478
Period size: 127 Copynumber: 7.8 Consensus size: 127
163921585 TTTTCTTTAG
* ** * * *
163921595 CCCGCACATCCGAGCCACC-AGGTGCCCCTGCTGCTCGAGGCACCCGCATATCCAACGTCCTAGG
1 CCCGCACATCCAAG-CACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCAA-GACCTAGG
* * * *
163921659 TTGCCGATGGTGTCTGAGGCTCCAGCACA-TCCAATCACCAAGG-TGCCAATGCTGCTCGAGGCT
64 TTGCCGATGGTGCCCGAGGCTCCAGCA-AGACCAAGCACCAAGGTTGCCAATGCTGCTCGAGGCT
* *
163921722 -TCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCAAGGCACCAAGG
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCAA-G-ACCTAGG
* ** * * * *
163921786 -TGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCGAGGTTGCCGATGGTGTTCGAGGCT
64 TTGCCGATGGTGCCCGAGGCTCCAGCAAGACCAAGCACCAAGGTTGCCAATGCTGCTCGAGGCT
* * * * * * *
163921849 CCCGCACATCCAAGCACCAAGGTGCCGATGGTACCCGAGGTTCTCGCACGAT-CAAGGCCTAGGT
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGACCTAGGT
* * * * * * * * *
163921913 TGCCGATGGTGCCCGAGGTTCTC-GTACGATCAAG-GCCTAGGTTGCCGATGGTGCCCGAGGCT
65 TGCCGATGGTGCCCGAGGCTC-CAGCAAGACCAAGCACCAAGGTTGCCAATGCTGCTCGAGGCT
** * * *
163921975 CCCGCACATCCAAG-GGCTAGGTGCCAATGGTGGC-CGAGGCTCCCGCACGA-CCAAGGGCCTAG
1 CCCGCACATCCAAGCACCAAGGTGCCAATGCT-GCTCGAGGCTCCCGCAC-ATCCAA-GACCTAG
* * * * ** * * * *
163922037 G-TGCCGATTGT-CCCAAGGCTATC-GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
63 GTTGCCGATGGTGCCCGAGGCT-CCAGCAAGACCAAGCACCAAGGTTGCCAATGCTGCTCGAGGC
163922099 T
127 T
* ** * * * * *
163922100 CCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACC-AA
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCACATCCAAG-ACCTAG
* * * ** * * * *
163922163 GATGCCGATAGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCT
63 GTTGCCGATGGTGCCCGAGGCTCCAGCAAGACCAAGCACCAAGGTTGCCAATGCTGCTCGAGGCT
* ** * * * * ** * *
163922227 CTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGGC-CGAAGCTCCTACACGA-CCAGGGGCCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCT-GCTCGAGGCTCCCGCAC-ATCCA-AGACCT
* * * ** * * * * *
163922289 AGG-TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGTCGAAG
61 AGGTTGCCGATGGTGCCCGAGGCTCCAGCAAGACCAAGCACCAAGGTTGCCAATGCTGCTCGAGG
163922353 CT
126 CT
* ** * * * * * * *
163922355 CCCGCACGA-CCAGGGGCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAA-GACCTAG
* ** * ** * *
163922418 GTT-CCGATGGTGCCCGAGGCTCTC-GCACGACCAAGGGCCTAGGTTGCTGATGGT-ATCGAGGC
63 GTTGCCGATGGTGCCCGAGGCTC-CAGCAAGACCAAGCACCAAGGTTGCCAATGCTGCTCGAGGC
163922480 T
127 T
* * ** * * * * *
163922481 CCCGCGCGA-CCAGGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCCCACATCCAAGCACCAAG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCACATCCAAG-ACCTAG
* * *
163922545 G-TGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAG
63 GTTGCCGATGGTGCCCGAGGCTCCAGCAAGACCAAG
163922580 GGGCTAGGTG
Statistics
Matches: 731, Mismatches: 91, Indels: 72
0.82 0.10 0.08
Matches are distributed among these distances:
124 17 0.02
125 83 0.11
126 176 0.24
127 336 0.46
128 117 0.16
129 2 0.00
ACGTcount: A:0.19, C:0.34, G:0.32, T:0.16
Consensus pattern (127 bp):
CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCAAGACCTAGGTT
GCCGATGGTGCCCGAGGCTCCAGCAAGACCAAGCACCAAGGTTGCCAATGCTGCTCGAGGCT
Found at i:163921888 original size:42 final size:42
Alignment explanation
Indices: 163921653--163922639 Score: 1001
Period size: 42 Copynumber: 23.4 Consensus size: 42
163921643 TATCCAACGT
* * * ***
163921653 CCTAGGTTGCCGATGGTGTCTGAGGCTCCAGCAC-ATCCAATCA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * * **
163921696 CCAAGGTGCCAATGCTGCTCGAGGCT-TCGCAC-ATCCAAGCA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * *
163921737 CCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGGCA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-G
* *
163921780 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** **
163921822 CCGAGGTTGCCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * *
163921865 CCAAGGTGCCGATGGTACCCGAGGTTCTCGCACGATCAA-GG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
163921906 CCTAGGTTGCCGATGGTGCCCGAGGTTCTCGTACGATCAA-GG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
163921948 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* *
163921991 -CTAGGTGCCAATGGTGGCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
163922032 CCTAGGTGCCGATTGT-CCCAAGGCTATCGCACGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
163922073 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
**
163922116 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * *
163922159 CCAAGATGCCGATAGTGCCCGAGGCTCCAGCACGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
163922201 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * ** *
163922243 CCTAGGTTGCCGATGGTGGCCGAAGCTCCTACACGACCAGGGG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
163922286 CCTAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * *
163922328 CCTAGGTTGCCGATGGTGGTCGAAGCTCCCGCACGACCAGGGG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
163922371 CCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
163922413 CCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * *
163922455 CCTAGGTTGCTGATGGT-ATCGAGGCTCCCGCGCGACCAGGGG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
163922497 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCCCAC-ATCCAAGCA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* *
163922540 CCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * ** * *
163922582 GCTAGGTGCCGATGGTGCCCGAGGCACCCGCACGATAAACGT
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
163922624 CCTAGGTTGCCGATGG
1 CCTAGG-TGCCGATGG
163922640 CGTCCAAGGC
Statistics
Matches: 809, Mismatches: 113, Indels: 44
0.84 0.12 0.05
Matches are distributed among these distances:
41 103 0.13
42 448 0.55
43 257 0.32
44 1 0.00
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.16
Consensus pattern (42 bp):
CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:163921912 original size:23 final size:23
Alignment explanation
Indices: 163921886--163921955 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 23
163921876 ATGGTACCCG
163921886 AGGTTCTCGCACGATCAAGGCCT
1 AGGTTCTCGCACGATCAAGGCCT
*** * *
163921909 AGG-T-T-GC-CGATGGTGCCCG
1 AGGTTCTCGCACGATCAAGGCCT
*
163921928 AGGTTCTCGTACGATCAAGGCCT
1 AGGTTCTCGCACGATCAAGGCCT
163921951 AGGTT
1 AGGTT
163921956 GCCGATGGTG
Statistics
Matches: 32, Mismatches: 11, Indels: 8
0.63 0.22 0.16
Matches are distributed among these distances:
19 10 0.31
20 3 0.09
21 2 0.06
22 2 0.06
23 15 0.47
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (23 bp):
AGGTTCTCGCACGATCAAGGCCT
Found at i:163921961 original size:169 final size:170
Alignment explanation
Indices: 163921653--163922639 Score: 1062
Period size: 169 Copynumber: 5.8 Consensus size: 170
163921643 TATCCAACGT
* * * * *
163921653 CCTAGGTTGCCGATGGTG-TCTGAGGCTCCAGCAC-ATCCAATCACCAAGGTGCCAATGCTGCTC
1 CCTAGGTTGCCGATGGTGCTC-GAGGCTCCCGCACGA-CCAAGCACCAAGGTGCCGATGGTGCCC
** * * * *
163921716 GAGGCT-TCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAG
64 GAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
*
163921777 GCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGG
127 G--CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGG
* * *
163921822 CCGAGGTTGCCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTACCCG
1 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGA-CCAAGCACCAAGGTGCCGATGGTGCCCG
* * * * * *
163921886 AGGTTCTCGCACGATCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGTTCTCGTACGATCAAGGCC
65 AGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCC
*
163921950 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACA-TCCAAGGG
130 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCA-AGACCAAGGG
* ** * * *
163921991 -CTAGG-TGCCAATGGTGGC-CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATTGT-CCCA
1 CCTAGGTTGCCGATGGT-GCTCGAGGCTCCCGCACGACCAAGCACCAAGGTGCCGATGGTGCCCG
* *
163922052 AGGCTATCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGC
65 AGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGC
* **
163922117 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACA-TCCAAGCA
129 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA-AGACCAAGGG
* * * * * ** *
163922159 CC-AAGATGCCGATAGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGCACCAAGGTGCCGATGGTGCCCGA
* * ** *
163922223 GGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCGAAGCTCCTACACGACCAGGGGCC
66 GGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGCC
* *
163922288 TAGG-TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGG
130 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGG
* * * ** * *
163922328 CCTAGGTTGCCGATGGTGGTCGAAGCTCCCGCACGACCAGGGGCCTAGGTTCCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGCACCAAGGTGCCGATGGTGCCCGA
*
163922393 GGCTCTCGCACGACCAAGGGCCTAGGTT-CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCC
66 GGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCC
* ** ** *
163922457 TAGGTTGCTGATGGT-ATCGAGGCTCCCGCGCGACCAGGGG
130 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGG
* *
163922497 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCCCAC-ATCCAAGCACCAAGGTGCCGGTGGTGCCCG
1 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGA-CCAAGCACCAAGGTGCCGATGGTGCCCG
* * * ** *
163922561 AGGCTCCCGCACGACCAAGGGGCTAGG-TGCCGATGGTGCCCGAGGCACCCGCACGATAAACGTC
65 AGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGC
163922625 CTAGGTTGCCGATGG
129 CTAGGTTGCCGATGG
163922640 CGTCCAAGGC
Statistics
Matches: 704, Mismatches: 93, Indels: 42
0.84 0.11 0.05
Matches are distributed among these distances:
166 18 0.03
167 79 0.11
168 60 0.09
169 349 0.50
170 196 0.28
171 2 0.00
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.16
Consensus pattern (170 bp):
CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGCACCAAGGTGCCGATGGTGCCCGA
GGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCT
AGGTTGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGG
Found at i:163922652 original size:85 final size:85
Alignment explanation
Indices: 163921653--163922639 Score: 1038
Period size: 85 Copynumber: 11.7 Consensus size: 85
163921643 TATCCAACGT
* * * *** * * * *
163921653 CCTAGGTTGCCGATGGTGTCTGAGGCTCCAGCAC-ATCCAATCACCAAGGTGCCAATGCTGCTCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCG
* **
163921717 AGGCT-TCGCAC-ATCCAAGCA
65 AGGCTCCCGCACGA-CCAAGGG
* * * * * *
163921737 CCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTGCCGATGGTGCCC
*
163921800 GAGGCTCCCGCAAGACCAAGGG
64 GAGGCTCCCGCACGACCAAGGG
* ** ** * *
163921822 CCGAGGTTGCCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTACCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCG
* * *
163921886 AGGTTCTCGCACGATCAA-GG
65 AGGCTCCCGCACGACCAAGGG
* * * *
163921906 CCTAGGTTGCCGATGGTGCCCGAGGTTCTCGTACGATCAA-GGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCG
163921970 AGGCTCCCGCAC-ATCCAAGGG
65 AGGCTCCCGCACGA-CCAAGGG
* * * *
163921991 -CTAGG-TGCCAATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATTGT-CCCAA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGA
**
163922053 GGCTATCGCACGACCAAGGG
66 GGCTCCCGCACGACCAAGGG
*
163922073 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCG
**
163922138 AGGCTCCCGCAC-ATCCAAGCA
65 AGGCTCCCGCACGA-CCAAGGG
* * * *
163922159 CC-AAGATGCCGATAGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGA
*
163922223 GGCTCTCGCACGACCAAGGG
66 GGCTCCCGCACGACCAAGGG
* * ** * *
163922243 CCTAGGTTGCCGATGGTGGCCGAAGCTCCTACACGACCAGGGGCCTAGGTGCCGATGGTGGCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGA
163922308 GGCTCCCGCACGACCAAGGG
66 GGCTCCCGCACGACCAAGGG
** * * *
163922328 CCTAGGTTGCCGATGGTGGTCGAAGCTCCCGCACGACCAGGGGCCTAGGTTCCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGA
*
163922393 GGCTCTCGCACGACCAAGGG
66 GGCTCCCGCACGACCAAGGG
* * **
163922413 CCTAGGTT-CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCTGATGGT-ATCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCG
* *
163922476 AGGCTCCCGCGCGACCAGGGG
65 AGGCTCCCGCACGACCAAGGG
* * ** * *
163922497 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCCCAC-ATCCAAGCACCAAGGTGCCGGTGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCG
163922561 AGGCTCCCGCACGACCAAGGG
65 AGGCTCCCGCACGACCAAGGG
* * ** * *
163922582 GCTAGG-TGCCGATGGTGCCCGAGGCACCCGCACGATAAACGTCCTAGGTTGCCGATGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGG
163922640 CGTCCAAGGC
Statistics
Matches: 762, Mismatches: 118, Indels: 45
0.82 0.13 0.05
Matches are distributed among these distances:
82 20 0.03
83 75 0.10
84 277 0.36
85 338 0.44
86 52 0.07
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.16
Consensus pattern (85 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGA
GGCTCCCGCACGACCAAGGG
Found at i:163922652 original size:127 final size:129
Alignment explanation
Indices: 163921756--163922639 Score: 1050
Period size: 127 Copynumber: 7.0 Consensus size: 129
163921746 CAATGCTGCT
* * *
163921756 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAG
1 CGAGGCTCCCGCACGATCCAA-GCGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
* ** ** * *
163921820 GGCCGAGGTTGCCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTAC
65 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGC
163921883 C
129 C
* * * * * *
163921884 CGAGGTTCTCGCACGAT-CAAG-GCCTAGGTTGCCGATGGTGCCCGAGGTTCTCGTACGATCAA-
1 CGAGGCTCCCGCACGATCCAAGCGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
* *
163921946 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGG-CTAGG-TGCCAATGGTGG
65 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGC
163922008 C
129 C
* * * **
163922009 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATTGT-CCCAAGGCTATCGCACGACCAAGG
1 CGAGGCTCCCGCACGATCCAAGCGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
163922072 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
66 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
163922136 CGAGGCTCCCGCAC-ATCCAAGCACCAAGATGCCGATAGTGCCCGAGGCTCCAGCACGACCAAGG
1 CGAGGCTCCCGCACGATCCAAGCGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* *
163922200 GCCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGC
66 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * *
163922263 CGAAGCTCCTACACGA-CCAGGGGCCTAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGATCCAAGCGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
** * *
163922327 GCCTAGGTTGCCGATGGTGGTCGAAGCTCCCGCACGACCAGGGGCCTAGGTT-CCGATGGTGCC
66 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
163922390 CGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGG
1 CGAGGCTCCCGCACGATCCAAGCGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* ** * * *
163922454 GCCTAGGTTGCTGATGGT-ATCGAGGCTCCCGCGCGACCAGGGGCCTAGGTTGCCGATGGTGCT
66 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
163922517 CGAGGCTCCCCCAC-ATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGATCCAAGCGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * ** * *
163922581 GGCTAGG-TGCCGATGGTGCCCGAGGCACCCGCACGATAAACGTCCTAGGTTGCCGATGG
66 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
163922640 CGTCCAAGGC
Statistics
Matches: 651, Mismatches: 90, Indels: 31
0.84 0.12 0.04
Matches are distributed among these distances:
124 17 0.03
125 83 0.13
126 99 0.15
127 368 0.57
128 82 0.13
129 2 0.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.15
Consensus pattern (129 bp):
CGAGGCTCCCGCACGATCCAAGCGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
Found at i:163922883 original size:24 final size:24
Alignment explanation
Indices: 163922851--163922925 Score: 123
Period size: 24 Copynumber: 3.1 Consensus size: 24
163922841 TTTTGATATT
163922851 CCGGGATGGCTCGCCGGAGCACCG
1 CCGGGATGGCTCGCCGGAGCACCG
163922875 CCGGGATGGCTCGCCGGAGCACCG
1 CCGGGATGGCTCGCCGGAGCACCG
* * *
163922899 CTGGGATGGATCGCCAGAGCACCG
1 CCGGGATGGCTCGCCGGAGCACCG
163922923 CCG
1 CCG
163922926 AGAACCTAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.15, C:0.36, G:0.40, T:0.09
Consensus pattern (24 bp):
CCGGGATGGCTCGCCGGAGCACCG
Found at i:163929545 original size:58 final size:58
Alignment explanation
Indices: 163929454--163929569 Score: 187
Period size: 58 Copynumber: 2.0 Consensus size: 58
163929444 GGGAGGGATA
* * *
163929454 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACTGTATCCGAATCCTACCTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTT
* *
163929512 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTT
163929570 TAGGATTGGG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (58 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTT
Found at i:163938281 original size:43 final size:43
Alignment explanation
Indices: 163938130--163939138 Score: 899
Period size: 43 Copynumber: 23.6 Consensus size: 43
163938120 CATCCAACGT
* * **
163938130 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * **
163938173 CCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
** *
163938215 CGAAGG-TGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
163938257 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * ** **
163938300 CCTAGGTTGCCGATGGTGTCTGAGGCTCCCGTGC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
** * *
163938343 CGAAGG-TGCCGATGGTGCCTGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
163938385 CCTAGGTTACCGATAGTGCCCAAGGCTCCCGTACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
163938428 CCTAGG-TCCCAATGGTGCCTGAGGCTCTCGCACGACC-AGAGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GG
* * * *
163938470 CCTAGGTTGCCGATGGTGCCCAAGGATCCCGCACGACTAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
163938513 CTTAGGTTGCCGATGGTGCCAGACGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
163938556 CCCAGGTTGCCGATAGTGCCCGAGGCTTCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
163938599 CCTAGGTTGCAGATGGTGCCGATGGTGTGAGGCTCTCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCC-------CGAGGCTCCCGCACGACCAAGGG
* * * *
163938649 CCTAGGCTGCCGATGGTG-CCGAGACTCCCGCACGACTAAGTG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
163938691 CCTAGGTTGCCGATGGTGTCCGAGGCTTCCGCAC-ATCCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * *
163938734 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * *
163938777 CCAAGG-TGCCGATGGTGTCCGAGGCTCCCGTACAACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
163938819 CCTAGGTTGCCGATGGTGTCCGAGG-TCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
163938861 CCTAGGTTGCGGA-AGTG-CCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
163938902 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGTACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
163938945 CCTAGGTTACCGATGGTGCCCGTGGCTCCCGTACGACCAAGGT
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * ** **
163938988 CCTAGGTTGCCAATGGTG-CCGAGGCTCTCGCAC-ATCCTTGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * **
163939030 CCAAGG-TGCCGATGGTGCCCAAGGCTCCCGCAC-ATCCGAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * * *
163939072 CCAAAG-TGCTGATGGT-CACCGAGGCTCCTGCACAACCAAGAG
1 CCTAGGTTGCCGATGGTGC-CCGAGGCTCCCGCACGACCAAGGG
* * *
163939114 CCTAGTTTGCCGATAGTGTCCGAGG
1 CCTAGGTTGCCGATGGTGCCCGAGG
163939139 TGTCCGAGGC
Statistics
Matches: 805, Mismatches: 133, Indels: 56
0.81 0.13 0.06
Matches are distributed among these distances:
40 6 0.01
41 44 0.05
42 311 0.39
43 406 0.50
44 1 0.00
49 1 0.00
50 36 0.04
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (43 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:163938281 original size:85 final size:86
Alignment explanation
Indices: 163938130--163939138 Score: 899
Period size: 85 Copynumber: 11.8 Consensus size: 86
163938120 CATCCAACGT
* * ** * * * *
163938130 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
**
163938193 GAGGCTCCCGCAC-ATCCAAGCA
65 GAGGCTCCCGCACGA-CCAAGGG
** * *
163938215 CGAAGG-TGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTACCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
163938279 AGGCTCCCGCACGACCAAGGG
66 AGGCTCCCGCACGACCAAGGG
* * ** ** ** *
163938300 CCTAGGTTGCCGATGGTGTCTGAGGCTCCCGTGC-ATCCAAGCACGAAGG-TGCCGATGGTGCCT
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
*
163938363 GAGGCTCCCGCACGACCAGGGG
65 GAGGCTCCCGCACGACCAAGGG
* * * * * * * *
163938385 CCTAGGTTACCGATAGTGCCCAAGGCTCCCGTACGACCAGGGGCCTAGG-TCCCAATGGTGCCTG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
163938449 AGGCTCTCGCACGACC-AGAGG
66 AGGCTCCCGCACGACCAAG-GG
* * * * * *
163938470 CCTAGGTTGCCGATGGTGCCCAAGGATCCCGCACGACTAGGGGCTTAGGTTGCCGATGGTGCCAG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
163938535 ACGCTCCCGCACGACCAGGGG
66 AGGCTCCCGCACGACCAAGGG
* * * * *
163938556 CCCAGGTTGCCGATAGTGCCCGAGGCTTCCGCACGACCAGGGGCCTAGGTTGCAGATGGTGCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC--
* * *
163938621 TGGTGTGAGGCTCTCGCACGACCAGGGG
64 -----CGAGGCTCCCGCACGACCAAGGG
* * * * *
163938649 CCTAGGCTGCCGATGGTG-CCGAGACTCCCGCACGACTAAGTGCCTAGGTTGCCGATGGTGTCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
163938713 AGGCTTCCGCAC-ATCCAAGGG
66 AGGCTCCCGCACGA-CCAAGGG
* * * * *
163938734 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCGCCAAGG-TGCCGATGGTGTCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* *
163938797 GAGGCTCCCGTACAACCAAGGG
65 GAGGCTCCCGCACGACCAAGGG
* * *
163938819 CCTAGGTTGCCGATGGTGTCCGAGG-TCCCGCACGACCAAGGGCCTAGGTTGCGGA-AGTG-CCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
163938881 AGGCTCTCGCACGACCAAGGG
66 AGGCTCCCGCACGACCAAGGG
* * *
163938902 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGTACGACCAAGGGCCTAGGTTACCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * *
163938967 TGGCTCCCGTACGACCAAGGT
66 AGGCTCCCGCACGACCAAGGG
* * ** ** *
163938988 CCTAGGTTGCCAATGGTG-CCGAGGCTCTCGCAC-ATCCTTGCACCAAGG-TGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* * **
163939050 AAGGCTCCCGCAC-ATCCGAGCA
65 GAGGCTCCCGCACGA-CCAAGGG
* * * * * * * * *
163939072 CCAAAG-TGCTGATGGT-CACCGAGGCTCCTGCACAACCAAGAGCCTAGTTTGCCGATAGTGTCC
1 CCTAGGTTGCCGATGGTGC-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
163939135 GAGG
65 GAGG
163939139 TGTCCGAGGC
Statistics
Matches: 758, Mismatches: 135, Indels: 62
0.79 0.14 0.06
Matches are distributed among these distances:
83 53 0.07
84 136 0.18
85 317 0.42
86 179 0.24
87 1 0.00
92 37 0.05
93 35 0.05
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (86 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
AGGCTCCCGCACGACCAAGGG
Done.