Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 528 of 770
Found at i:163938367 original size:128 final size:128
Alignment explanation
Indices: 163938130--163939062 Score: 802
Period size: 128 Copynumber: 7.3 Consensus size: 128
163938120 CATCCAACGT
* * ** * * * *
163938130 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
*
163938193 GAGGCTCCCGCAC-ATCCAAGCACGAAGG-TGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGG
65 GAGGCTCCCGCACGA-CCAAGCACGAAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGG
163938256 G
128 G
* * *
163938257 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
** *
163938322 AGGCTCCCGTGC-ATCCAAGCACGAAGG-TGCCGATGGTGCCTGAGGCTCCCGCACGACCAGGGG
66 AGGCTCCCGCACGA-CCAAGCACGAAGGTTGCCGATGGTGCC-GAGGCTCCCGCACGACCAAGGG
* * * * * * * *
163938385 CCTAGGTTACCGATAGTGCCCAAGGCTCCCGTACGACCAGGGGCCTAGG-TCCCAATGGTGCCTG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * * * *
163938449 AGGCTCTCGCACGACCAGAGGC-C-TAGGTTGCCGATGGTGCCCAAGGATCCCGCACGACTAGGG
66 AGGCTCCCGCACGACCA-A-GCACGAAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGG
163938512 G
128 G
* * * * * *
163938513 CTTAGGTTGCCGATGGTGCCAGACGCTCCCGCACGACCAGGGGCCCAGGTTGCCGATAGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * ** ** * *
163938578 AGGCTTCCGCACGACCAGGGGCCTAGGTTGCAGATGGTGCCGATGGTGTGAGGCTCTCGCACGAC
66 AGGCTCCCGCACGACCAAGCACGAAGGTTGCCGATGGTGCC--------GAGGCTCCCGCACGAC
*
163938643 CAGGGG
123 CAAGGG
* * * * *
163938649 CCTAGGCTGCCGATGGTG-CCGAGACTCCCGCACGACTAAGTGCCTAGGTTGCCGATGGTGTCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* ** ** * *
163938713 AGGCTTCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGC
66 AGGCTCCCGCACGA-CCAAGCACGAAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGA-CCAAGG
163938776 G
128 G
* * * * *
163938777 CCAAGG-TGCCGATGGTGTCCGAGGCTCCCGTACAACCAAGGGCCTAGGTTGCCGATGGTGTCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
** ** * * *
163938841 AGG-TCCCGCACGACCAAGGGCCTAGGTTGCGGA-AGTGCCGAGGCTCTCGCACGACCAAGGG
66 AGGCTCCCGCACGACCAAGCACGAAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
* * *
163938902 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGTACGACCAAGGGCCTAGGTTACCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * ** ** * * ** **
163938967 TGGCTCCCGTACGACCAAGGTCCTAGGTTGCCAATGGTGCCGAGGCTCTCGCAC-ATCCTTGCA
66 AGGCTCCCGCACGACCAAGCACGAAGGTTGCCGATGGTGCCGAGGCTCCCGCACGA-CCAAGGG
* *
163939030 CCAAGG-TGCCGATGGTGCCCAAGGCTCCCGCAC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
163939063 ATCCGAGCAC
Statistics
Matches: 678, Mismatches: 99, Indels: 58
0.81 0.12 0.07
Matches are distributed among these distances:
125 24 0.04
126 59 0.09
127 160 0.24
128 281 0.41
129 45 0.07
134 1 0.00
135 72 0.11
136 36 0.05
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (128 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
AGGCTCCCGCACGACCAAGCACGAAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
Found at i:163939471 original size:24 final size:25
Alignment explanation
Indices: 163939444--163939514 Score: 83
Period size: 24 Copynumber: 2.9 Consensus size: 25
163939434 TTCTGGGATG
*
163939444 GCTCACCGGAGCACCGCCGGGAA-A
1 GCTCGCCGGAGCACCGCCGGGAATA
* *
163939468 GCTCGCCGGAGCACCACC-GGAATG
1 GCTCGCCGGAGCACCGCCGGGAATA
* *
163939492 GATCGTCGGAGCACCGCCGGGAA
1 GCTCGCCGGAGCACCGCCGGGAA
163939515 CCTAACCGGC
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
23 4 0.10
24 31 0.79
25 4 0.10
ACGTcount: A:0.23, C:0.35, G:0.35, T:0.07
Consensus pattern (25 bp):
GCTCGCCGGAGCACCGCCGGGAATA
Found at i:163942189 original size:24 final size:24
Alignment explanation
Indices: 163942157--163942209 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
163942147 TACAGTAGGG
163942157 AAGGATCTCTTTAAGCCTATTAGC
1 AAGGATCTCTTTAAGCCTATTAGC
163942181 AAGGATCTCTTTAAGCCTATTAGC
1 AAGGATCTCTTTAAGCCTATTAGC
*
163942205 CAGGA
1 AAGGA
163942210 CTTTCAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (24 bp):
AAGGATCTCTTTAAGCCTATTAGC
Found at i:163945840 original size:13 final size:13
Alignment explanation
Indices: 163945822--163945857 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 13
163945812 TACGCTCTTT
163945822 GCTACCAGGCGAC
1 GCTACCAGGCGAC
163945835 GCTACCA-G-G-C
1 GCTACCAGGCGAC
163945845 GCTACCAGGCGAC
1 GCTACCAGGCGAC
163945858 ATTCTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
10 8 0.40
11 2 0.10
12 2 0.10
13 8 0.40
ACGTcount: A:0.22, C:0.39, G:0.31, T:0.08
Consensus pattern (13 bp):
GCTACCAGGCGAC
Found at i:163950747 original size:21 final size:21
Alignment explanation
Indices: 163950723--163950763 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
163950713 AAATGAACAC
* *
163950723 CCAGCAGGAAGACCAAGAAAG
1 CCAGCAGAAAAACCAAGAAAG
163950744 CCAGCAGAAAAACCAAGAAA
1 CCAGCAGAAAAACCAAGAAA
163950764 AAATAGATCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.54, C:0.24, G:0.22, T:0.00
Consensus pattern (21 bp):
CCAGCAGAAAAACCAAGAAAG
Found at i:163951024 original size:19 final size:20
Alignment explanation
Indices: 163950977--163951025 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
163950967 AAAATAAAAC
*
163950977 AAGAAAA-AACAGGAAACCA
1 AAGAAAATAAAAGGAAACCA
* *
163950996 AATAATATAAAAGG-AACCA
1 AAGAAAATAAAAGGAAACCA
163951015 AAGAAAATAAA
1 AAGAAAATAAA
163951026 TCAGGAGGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
19 19 0.79
20 5 0.21
ACGTcount: A:0.69, C:0.10, G:0.12, T:0.08
Consensus pattern (20 bp):
AAGAAAATAAAAGGAAACCA
Found at i:163951353 original size:13 final size:13
Alignment explanation
Indices: 163951335--163951360 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
163951325 CCGTGCTACT
163951335 GCTACCAGGCGAC
1 GCTACCAGGCGAC
163951348 GCTACCAGGCGAC
1 GCTACCAGGCGAC
163951361 ATTCATGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.38, G:0.31, T:0.08
Consensus pattern (13 bp):
GCTACCAGGCGAC
Found at i:163952489 original size:183 final size:180
Alignment explanation
Indices: 163952166--163952526 Score: 506
Period size: 183 Copynumber: 2.0 Consensus size: 180
163952156 ATTTTTAATT
* * * * *
163952166 GAAAATTTTTCCTGTTGGCCCAAAAGAAAAACAAGAAGCCGAATGAAATATGGCATGATGGCATG
1 GAAAATTTTTCCTGTTCGCCCAAAAGAAAAACAAGAAGCCGAATGAAATATGACACGATGACACG
* * *
163952231 GTAGAAAATTAAACAAGTGCCCGGACCACCAACAGTTGGGAGCTCGCACCCACACCACCGCGGCC
66 GCAGAAAATTAAACAAGTGCCCGGACCACCAACAGTTGGAAGCTCGCACCCACACCACCACGGCC
* * * *
163952296 CCCGTTGTGCCATGTTTCCCGAGGGGGCGGTACGGTCAAGTGTCTAACTTA
131 CCCGTTGTGCCAT-ATTCCCGAGGGGGCGGCAAGGCCAAGTGTCTAACTTA
* * * * * *
163952347 GAAATTTTTTTCTGTTCGCCCAAAATAAATACAAGAGGCCGAATGAAGTATGACACGACATGACA
1 GAAAATTTTTCCTGTTCGCCCAAAAGAAAAACAAGAAGCCGAATGAAATATGACACG--ATGACA
* *
163952412 CGGCAGAAAATTAAACAAGTGCCCGGACCACCAACAGTTGGAAGCTCGCACTCGCACCACCACGG
64 CGGCAGAAAATTAAACAAGTGCCCGGACCACCAACAGTTGGAAGCTCGCACCCACACCACCACGG
*
163952477 CCCCCGTTGTGCCATATTCCCGAGGGGGCGGCAAGGCCAAGTGTTTAACT
129 CCCCCGTTGTGCCATATTCCCGAGGGGGCGGCAAGGCCAAGTGTCTAACT
163952527 AACTCCTTAC
Statistics
Matches: 157, Mismatches: 21, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
181 48 0.31
182 30 0.19
183 79 0.50
ACGTcount: A:0.30, C:0.26, G:0.24, T:0.19
Consensus pattern (180 bp):
GAAAATTTTTCCTGTTCGCCCAAAAGAAAAACAAGAAGCCGAATGAAATATGACACGATGACACG
GCAGAAAATTAAACAAGTGCCCGGACCACCAACAGTTGGAAGCTCGCACCCACACCACCACGGCC
CCCGTTGTGCCATATTCCCGAGGGGGCGGCAAGGCCAAGTGTCTAACTTA
Found at i:163955293 original size:39 final size:39
Alignment explanation
Indices: 163955239--163955382 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
163955229 GAATGTTCGA
163955239 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
163955278 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
163955317 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
163955356 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
163955383 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:163955329 original size:78 final size:79
Alignment explanation
Indices: 163955240--163955422 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
163955230 AATGTTCGAG
163955240 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
163955304 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
163955318 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
163955383 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
163955397 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
163955423 GTTTGAACGA
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:163962486 original size:38 final size:39
Alignment explanation
Indices: 163962434--163962576 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
163962424 GAATGTTCGA
163962434 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
163962473 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
163962511 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
163962550 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
163962577 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:163962522 original size:77 final size:79
Alignment explanation
Indices: 163962435--163962616 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
163962425 AATGTTCGAG
163962435 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
163962498 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
163962512 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
163962577 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
163962591 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
163962617 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:163967175 original size:2 final size:2
Alignment explanation
Indices: 163967168--163967197 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
163967158 ACATTCAGCC
163967168 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
163967198 GCATGTGTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:163967713 original size:29 final size:29
Alignment explanation
Indices: 163967652--163967750 Score: 159
Period size: 28 Copynumber: 3.5 Consensus size: 29
163967642 AATGAGATTG
163967652 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
*
163967680 GCACTAAGTGTGCGAGTTTGAATTGCATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
163967709 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
1 GCACTAAGTGTGCGAGTTTGAAT-TGTATA
163967737 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
163967751 GACTTACTGT
Statistics
Matches: 67, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
28 34 0.51
29 32 0.48
30 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.31
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATTGTATA
Found at i:163969976 original size:42 final size:42
Alignment explanation
Indices: 163969927--163970080 Score: 186
Period size: 42 Copynumber: 3.7 Consensus size: 42
163969917 ATGAGTTTAT
*
163969927 GTGTAAGACCATATCTGGGATATGGCATCGTTATGAGATATC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATATC
* *
163969969 GTGTAAGACCATGTCTGGGACATGGCATCGATATGAGA-ATC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATATC
* * **
163970010 GTGTAAGACCAT-TGCTGGGCTATTGGCATCAATATGAGATCCC
1 GTGTAAGACCATAT-CTGGGATA-TGGCATCGATATGAGATATC
* * *
163970053 ATGTAAGACCATATTTGAGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
163970081 TGGTATGATT
Statistics
Matches: 96, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
40 1 0.01
41 21 0.22
42 56 0.58
43 17 0.18
44 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATATC
Found at i:163971690 original size:25 final size:23
Alignment explanation
Indices: 163971662--163971720 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 23
163971652 ACTACCGATC
163971662 AGGATGCTCGCAG-GAACTATATAAT
1 AGGATGCTCG-AGAG-ACT-TATAAT
*
163971687 AGGATGCTCGAGAGGCTTATAAT
1 AGGATGCTCGAGAGACTTATAAT
163971710 AGGATTGCTCG
1 AGGA-TGCTCG
163971721 TATGAGCTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
23 10 0.32
24 10 0.32
25 11 0.35
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (23 bp):
AGGATGCTCGAGAGACTTATAAT
Found at i:163973103 original size:54 final size:54
Alignment explanation
Indices: 163973018--163973125 Score: 189
Period size: 54 Copynumber: 2.0 Consensus size: 54
163973008 CAAACTGGAG
* **
163973018 AACTTTCTTCCAAGGTGATACTTTCATGAATACCTTATCATTGACCTGAAATTC
1 AACTTTCTTCCAAGGTGATACTTTCAGGAATACCTTATCACCGACCTGAAATTC
163973072 AACTTTCTTCCAAGGTGATACTTTCAGGAATACCTTATCACCGACCTGAAATTC
1 AACTTTCTTCCAAGGTGATACTTTCAGGAATACCTTATCACCGACCTGAAATTC
163973126 TATCTCTTTT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (54 bp):
AACTTTCTTCCAAGGTGATACTTTCAGGAATACCTTATCACCGACCTGAAATTC
Found at i:163980678 original size:27 final size:26
Alignment explanation
Indices: 163980630--163980681 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
163980620 GCGAGGCTGC
*
163980630 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
163980656 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
163980682 TTGCAACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:163981366 original size:27 final size:27
Alignment explanation
Indices: 163981336--163981528 Score: 203
Period size: 27 Copynumber: 7.2 Consensus size: 27
163981326 GGTAAATCGA
*
163981336 TAATTCTACCTTACAGGAGTATTTCAG
1 TAATTCTACCCTACAGGAGTATTTCAG
* * *
163981363 TAATTCTACCCTACTGGGGTATTTCGG
1 TAATTCTACCCTACAGGAGTATTTCAG
*
163981390 TAATTCTACCTTACAGGAGTATTTCAG
1 TAATTCTACCCTACAGGAGTATTTCAG
* * **
163981417 TAATTCCACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAGGAGTATTTCAG
* * *
163981444 AAATTCTACCGTACAGG-GTATTT-TG
1 TAATTCTACCCTACAGGAGTATTTCAG
* *
163981469 ATATTTCTACCCTACAAGGA-TATTTCGG
1 -TAATTCTACCCTAC-AGGAGTATTTCAG
* *
163981497 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGAGTATTTCAG
163981524 TAATT
1 TAATT
163981529 TTGTAAATCG
Statistics
Matches: 136, Mismatches: 25, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
25 1 0.01
26 20 0.15
27 114 0.84
28 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGAGTATTTCAG
Found at i:163981397 original size:54 final size:54
Alignment explanation
Indices: 163981336--163981528 Score: 255
Period size: 54 Copynumber: 3.6 Consensus size: 54
163981326 GGTAAATCGA
*
163981336 TAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCCTACTGGGGTATTTCGG
1 TAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGG
* *
163981390 TAATTCTACCTTACAGGAGTATTTCAGTAATTCCACCCTACAGGGGTATTTTGG
1 TAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGG
* * * * * *
163981444 AAATTCTACCGTACAGG-GTATTT-TGATATTTCTACCCTACAAGGATATTTCGG
1 TAATTCTACCTTACAGGAGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCGG
* * *
163981497 TAATTCTACCCTACAGGGGTATTTCAATAATT
1 TAATTCTACCTTACAGGAGTATTTCAGTAATT
163981529 TTGTAAATCG
Statistics
Matches: 120, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
52 1 0.01
53 43 0.36
54 76 0.63
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (54 bp):
TAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGG
Found at i:163981501 original size:80 final size:81
Alignment explanation
Indices: 163981336--163981522 Score: 234
Period size: 80 Copynumber: 2.3 Consensus size: 81
163981326 GGTAAATCGA
* * * * * *
163981336 TAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCCTACTGGGGTATTTCGGTAATTCTACCT
1 TAATTCTACCCTACAGGGGTATTTCAGAAATTCTACCCTACTAGGGTATTTCGATAATTCTACCC
163981401 TACAGGAGTATTTCAG
66 TACAGGAGTATTTCAG
* ** * * *
163981417 TAATTCCACCCTACAGGGGTATTTTGGAAATTCTACCGTAC-AGGGTATTTTGATATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCAGAAATTCTACCCTACTAGGGTATTTCGATAATTCTACCC
*
163981481 TACAAGGA-TATTTCGG
66 TAC-AGGAGTATTTCAG
163981497 TAATTCTACCCTACAGGGGTATTTCA
1 TAATTCTACCCTACAGGGGTATTTCA
163981523 ATAATTTTGT
Statistics
Matches: 89, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
80 51 0.57
81 38 0.43
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCAGAAATTCTACCCTACTAGGGTATTTCGATAATTCTACCC
TACAGGAGTATTTCAG
Found at i:163981543 original size:27 final size:27
Alignment explanation
Indices: 163981513--163981717 Score: 94
Period size: 27 Copynumber: 7.6 Consensus size: 27
163981503 TACCCTACAG
**
163981513 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTCAATAATTTTACAAATCGA
*** * * * * *
163981540 GGGTAAAACGATAATTCTATAAACCGG
1 GGGTATTTCAATAATTTTACAAATCGA
** * *
163981567 GGGTACTTT-GGTAATTTTACAAGTTGA
1 GGGTA-TTTCAATAATTTTACAAATCGA
* *
163981594 GGGTATTTCAATAATCTTACAAATCAA
1 GGGTATTTCAATAATTTTACAAATCGA
* *
163981621 GGGTATTTCAGTAATTTTGCAAA-CTGA
1 GGGTATTTCAATAATTTTACAAATC-GA
*** * * *
163981648 GGGTATTTGGGTAATTTTATAAACCGG
1 GGGTATTTCAATAATTTTACAAATCGA
** * *
163981675 GGGTACTTT-GGTAATTTTACAACT-GG
1 GGGTA-TTTCAATAATTTTACAAATCGA
*
163981701 GGGTATTTCATTAATTT
1 GGGTATTTCAATAATTT
163981718 GGTAAACTAA
Statistics
Matches: 134, Mismatches: 38, Indels: 13
0.72 0.21 0.07
Matches are distributed among these distances:
25 3 0.02
26 17 0.13
27 110 0.82
28 4 0.03
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (27 bp):
GGGTATTTCAATAATTTTACAAATCGA
Found at i:163981596 original size:54 final size:54
Alignment explanation
Indices: 163981548--163981709 Score: 168
Period size: 54 Copynumber: 3.0 Consensus size: 54
163981538 GAGGGTAAAA
**
163981548 CGATAATTCTATAAACCGGGGGTACTTTGGTAATTTTACAAGTTGAGGGTATTT
1 CGATAATTCTATAAACCGGGGGTACTTTGGTAATTTTACAAACTGAGGGTATTT
* * * ** * *
163981602 CAATAA-TCTTACAAATCAAGGGTA-TTTCAGTAATTTTGCAAACTGAGGGTATTT
1 CGATAATTC-TATAAACCGGGGGTACTTT-GGTAATTTTACAAACTGAGGGTATTT
* * * *
163981656 GGGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTAC-AACTGGGGGTATTT
1 CGATAATTCTATAAACCGGGGGTACTTTGGTAATTTTACAAACTGAGGGTATTT
163981709 C
1 C
163981710 ATTAATTTGG
Statistics
Matches: 83, Mismatches: 21, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
53 18 0.22
54 61 0.73
55 4 0.05
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.36
Consensus pattern (54 bp):
CGATAATTCTATAAACCGGGGGTACTTTGGTAATTTTACAAACTGAGGGTATTT
Found at i:163981629 original size:108 final size:107
Alignment explanation
Indices: 163981513--163981715 Score: 282
Period size: 108 Copynumber: 1.9 Consensus size: 107
163981503 TACCCTACAG
*
163981513 GGGTATTTCAATAATTTTGTAAA-TCGAGGGTAAAACGATAATTCTATAAACCGGGGGTACTTTG
1 GGGTATTTCAATAATTTTGCAAACT-GAGGGTAAAACGATAATTCTATAAACCGGGGGTACTTTG
*
163981577 GTAATTTTACAAGTTGAGGGTATTTCAATAATCTTACAAATCAA
65 GTAATTTTACAA-CTGAGGGTATTTCAATAATCTTACAAATCAA
* **** * *
163981621 GGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTGGGTAATTTTATAAACCGGGGGTACTTTGG
1 GGGTATTTCAATAATTTTGCAAACTGAGGGTAAAACGATAATTCTATAAACCGGGGGTACTTTGG
* *
163981686 TAATTTTACAACTGGGGGTATTTCATTAAT
66 TAATTTTACAACTGAGGGTATTTCAATAAT
163981716 TTGGTAAACT
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
107 16 0.19
108 66 0.80
109 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.36
Consensus pattern (107 bp):
GGGTATTTCAATAATTTTGCAAACTGAGGGTAAAACGATAATTCTATAAACCGGGGGTACTTTGG
TAATTTTACAACTGAGGGTATTTCAATAATCTTACAAATCAA
Found at i:163983816 original size:2 final size:2
Alignment explanation
Indices: 163983809--163983834 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
163983799 ACCAGAACAG
163983809 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
163983835 GTGGCGAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:163984602 original size:27 final size:27
Alignment explanation
Indices: 163984572--163984715 Score: 170
Period size: 27 Copynumber: 5.4 Consensus size: 27
163984562 GGGTAAATCG
163984572 GTAATTCTACCTTACAAGAGTATTTCA
1 GTAATTCTACCTTACAAGAGTATTTCA
* *
163984599 GTAATTCTACCCTAC-AGAGGTATTTCG
1 GTAATTCTACCTTACAAGA-GTATTTCA
*
163984626 GTAATTCTACCTTACAGGAGTATTTCA
1 GTAATTCTACCTTACAAGAGTATTTCA
* * * *
163984653 GTAATTCCACCCTACAAGGGTATTTCG
1 GTAATTCTACCTTACAAGAGTATTTCA
*
163984680 GTAATTCTACCTT--AAGGGT-TTTCA
1 GTAATTCTACCTTACAAGAGTATTTCA
*
163984704 GTATTTCTACCT
1 GTAATTCTACCT
163984716 ACTAAGGGTA
Statistics
Matches: 101, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
24 15 0.15
25 6 0.06
26 3 0.03
27 75 0.74
28 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCTTACAAGAGTATTTCA
Found at i:163984634 original size:54 final size:54
Alignment explanation
Indices: 163984569--163984725 Score: 225
Period size: 54 Copynumber: 3.0 Consensus size: 54
163984559 TAGGGGTAAA
163984569 TCGGTAATTCTACCTTACAAGAGTATTTCAGTAATTCTACCCTAC-AGAGGTATT
1 TCGGTAATTCTACCTTACAAGAGTATTTCAGTAATTCTACCCTACAAG-GGTATT
* *
163984623 TCGGTAATTCTACCTTACAGGAGTATTTCAGTAATTCCACCCTACAAGGGTATT
1 TCGGTAATTCTACCTTACAAGAGTATTTCAGTAATTCTACCCTACAAGGGTATT
* *
163984677 TCGGTAATTCTACCTT--AAGGGT-TTTCAGTATTTCTA-CCTACTAAGGGTA
1 TCGGTAATTCTACCTTACAAGAGTATTTCAGTAATTCTACCCTAC-AAGGGTA
163984726 AGGGTATTTC
Statistics
Matches: 95, Mismatches: 6, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
50 5 0.05
51 19 0.20
52 4 0.04
54 65 0.68
55 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (54 bp):
TCGGTAATTCTACCTTACAAGAGTATTTCAGTAATTCTACCCTACAAGGGTATT
Found at i:163984767 original size:27 final size:27
Alignment explanation
Indices: 163984572--163984769 Score: 163
Period size: 27 Copynumber: 7.2 Consensus size: 27
163984562 GGGTAAATCG
* * *
163984572 GTAATTCTACCTTACAAGAGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
163984599 GTAATTCTACCCTACAGAGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
163984626 GTAATTCTACCTTACAGGAGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
163984653 GTAATTCCACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
163984680 GTAATTCTACCTTA-A-GGGT-TTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
163984704 GTATTTCTA-CCTACTAAGGGTAAGGGTATTTC-
1 GTAATTCTACCCTAC--A--G---GGGTATTTCA
*
163984736 GATAATTCTACCCTACAGGGGTACTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
163984764 ATAATT
1 GTAATT
163984770 TTGTAAATCG
Statistics
Matches: 136, Mismatches: 22, Indels: 26
0.74 0.12 0.14
Matches are distributed among these distances:
23 3 0.02
24 12 0.09
25 4 0.03
26 2 0.01
27 92 0.68
30 1 0.01
32 6 0.04
33 11 0.08
34 5 0.04
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:163984784 original size:27 final size:27
Alignment explanation
Indices: 163984754--163984815 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
163984744 TACCCTACAG
* *
163984754 GGGTACTTCAATAATTTTGTAAATCGA
1 GGGTACTTCAATAATTCTATAAATCGA
*** *
163984781 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTACTTCAATAATTCTATAAATCGA
163984808 GGGTACTT
1 GGGTACTT
163984816 TGGTAATTTT
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (27 bp):
GGGTACTTCAATAATTCTATAAATCGA
Found at i:163984821 original size:27 final size:26
Alignment explanation
Indices: 163984791--163984937 Score: 127
Period size: 27 Copynumber: 5.5 Consensus size: 26
163984781 GGGTAAAACA
* *
163984791 GTAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTACAAATCGAGGGTA-TTTG
** *
163984818 GTAATTTTACAAGCCGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTT-G
* *
163984845 GTAATTTTACAAATTGAGGGTATTTTA
1 GTAATTTTACAAATCGAGGGTA-TTTG
* *
163984872 GTAATTTTGCAAA-CTGATGGTATTTGG
1 GTAATTTTACAAATC-GAGGGTATTT-G
*
163984899 GTAATTTTATAAATC-AGGGGTACTTTG
1 GTAATTTTACAAATCGA-GGGTA-TTTG
163984926 GTAATTTTACAA
1 GTAATTTTACAA
163984938 CTGGGGGTAT
Statistics
Matches: 97, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
26 7 0.07
27 83 0.86
28 7 0.07
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (26 bp):
GTAATTTTACAAATCGAGGGTATTTG
Found at i:163984823 original size:54 final size:53
Alignment explanation
Indices: 163984765--163984958 Score: 176
Period size: 54 Copynumber: 3.6 Consensus size: 53
163984755 GGTACTTCAA
* *** *
163984765 TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTACTTTGG
1 TAATTTTGCAAA-CGAGGGTATTTCAGTAATTTTATAAATCGAGGGTACTTTGG
* * * * * *
163984819 TAATTTTACAAGCCGAGGGTATTTCAGTAATTTTACAAATTGAGGGTATTTTAG
1 TAATTTTGCAA-ACGAGGGTATTTCAGTAATTTTATAAATCGAGGGTACTTTGG
* **
163984873 TAATTTTGCAAACTGATGGTATTTGGGTAATTTTATAAATC-AGGGGTACTTTGG
1 TAATTTTGCAAAC-GAGGGTATTTCAGTAATTTTATAAATCGA-GGGTACTTTGG
* * *
163984927 TAATTTTAC-AACTGGGGGTATTTCATTAATTT
1 TAATTTTGCAAAC-GAGGGTATTTCAGTAATTT
163984959 GGTAAAGTAA
Statistics
Matches: 111, Mismatches: 26, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
53 20 0.18
54 91 0.82
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (53 bp):
TAATTTTGCAAACGAGGGTATTTCAGTAATTTTATAAATCGAGGGTACTTTGG
Found at i:163987685 original size:67 final size:68
Alignment explanation
Indices: 163987608--163987775 Score: 286
Period size: 71 Copynumber: 2.5 Consensus size: 68
163987598 GAGATGTATC
163987608 CCATGTAGACAAGAGAGCTACGT-GATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGG
1 CCATGTAGACAAGAGAGCTACGTAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGG
163987672 ACA
66 ACA
163987675 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGT---AGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
163987740 AGGACA
63 AGGACA
*
163987746 CCATGTAGACAAGAGAGCTACG-AGACAAAT
1 CCATGTAGACAAGAGAGCTACGTAGATAAAT
163987776 CGGTTGGTCG
Statistics
Matches: 96, Mismatches: 1, Indels: 8
0.91 0.01 0.08
Matches are distributed among these distances:
67 30 0.31
71 66 0.69
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.19
Consensus pattern (68 bp):
CCATGTAGACAAGAGAGCTACGTAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGG
ACA
Found at i:163995240 original size:41 final size:41
Alignment explanation
Indices: 163995195--163995312 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
163995185 TGAAAGATAA
163995195 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
163995236 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
163995266 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
163995307 ATGTAG
1 ATGTAG
163995313 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:163995251 original size:71 final size:71
Alignment explanation
Indices: 163995163--163995326 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
163995153 GAGATGTATC
163995163 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
163995228 AGGACA
66 AGGACA
163995234 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
163995299 AGGACA
66 AGGACA
163995305 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
163995327 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:164010507 original size:2 final size:2
Alignment explanation
Indices: 164010500--164010530 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
164010490 TTTTAGAGAA
164010500 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
164010531 CACACATACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:164011106 original size:21 final size:21
Alignment explanation
Indices: 164011082--164011132 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
164011072 CTGCCATCGT
*
164011082 TGCTGCCTCTGCCTCTCTCAC
1 TGCTGCCTCTGCCTCCCTCAC
* * *
164011103 TGCTACCGCTGCCTCCCTCGC
1 TGCTGCCTCTGCCTCCCTCAC
164011124 TGCTGCCTC
1 TGCTGCCTC
164011133 CGCTCTAAGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.04, C:0.49, G:0.18, T:0.29
Consensus pattern (21 bp):
TGCTGCCTCTGCCTCCCTCAC
Found at i:164016602 original size:9 final size:9
Alignment explanation
Indices: 164016584--164017051 Score: 88
Period size: 9 Copynumber: 52.7 Consensus size: 9
164016574 TAAGTATAAT
164016584 TAAGTTATG
1 TAAGTTATG
*
164016593 TAAGTCATG
1 TAAGTTATG
164016602 T-A-TTATG
1 TAAGTTATG
164016609 TAAGTTATG
1 TAAGTTATG
*
164016618 TAAATTATG
1 TAAGTTATG
* *
164016627 TAAATCATG
1 TAAGTTATG
* *
164016636 -AATTTTGATCTT
1 TAA-GTT-A--TG
*
164016648 TAAATTATG
1 TAAGTTATG
164016657 TAAGTTATG
1 TAAGTTATG
164016666 T-A-TTATG
1 TAAGTTATG
164016673 TAAGTTATG
1 TAAGTTATG
164016682 T-A-TTATG
1 TAAGTTATG
164016689 TAAGTTATG
1 TAAGTTATG
*
164016698 -AAATT-TG
1 TAAGTTATG
* **
164016705 -AACTTTAAA
1 TAA-GTTATG
*
164016714 TTA-TTATG
1 TAAGTTATG
164016722 TAAGTTATG
1 TAAGTTATG
*
164016731 TAAATTATG
1 TAAGTTATG
*
164016740 TAACTTATG
1 TAAGTTATG
* * *
164016749 AAATTTGATCTT
1 TAAGTT-A--TG
*
164016761 TAAATTATG
1 TAAGTTATG
164016770 TAAGTTATG
1 TAAGTTATG
*
164016779 -AAATT-TG
1 TAAGTTATG
* **
164016786 -AACTTTAAC
1 TAA-GTTATG
*
164016795 TTA-TTATG
1 TAAGTTATG
164016803 TAAGTTATG
1 TAAGTTATG
* *
164016812 TAAATTTTG
1 TAAGTTATG
*
164016821 TAACTTATG
1 TAAGTTATG
*
164016830 -AAATT-TG
1 TAAGTTATG
* **
164016837 -AACTTTAAA
1 TAA-GTTATG
*
164016846 TTA-TTATG
1 TAAGTTATG
164016854 TAAGTTATG
1 TAAGTTATG
*
164016863 TAAATGT-TG
1 TAAGT-TATG
*
164016872 TAACTTATG
1 TAAGTTATG
* * * *
164016881 AAATTTGGTCTT
1 TAA---GTTATG
*
164016893 TAAATTATG
1 TAAGTTATG
164016902 TAAGTTATG
1 TAAGTTATG
*
164016911 T-A-TCATG
1 TAAGTTATG
164016918 TAAGTTATG
1 TAAGTTATG
* * *
164016927 AAATTTGATCTT
1 TAAGTT-A--TG
*
164016939 TAAATTATG
1 TAAGTTATG
*
164016948 TAAGTCATG
1 TAAGTTATG
164016957 T-A-TTATG
1 TAAGTTATG
* *
164016964 TAAGATAAG
1 TAAGTTATG
*
164016973 TAAATTATG
1 TAAGTTATG
164016982 TAAGTTATG
1 TAAGTTATG
* * *
164016991 AAATTTGAACTT
1 TAAGTT--A-TG
*
164017003 TAAATTATG
1 TAAGTTATG
164017012 TAAGTTATG
1 TAAGTTATG
164017021 T-A-TTATG
1 TAAGTTATG
*
164017028 TAAATTATG
1 TAAGTTATG
*
164017037 TAAATTATG
1 TAAGTTATG
*
164017046 TGAGTT
1 TAAGTT
164017052 GTTGGTGAAC
Statistics
Matches: 330, Mismatches: 86, Indels: 86
0.66 0.17 0.17
Matches are distributed among these distances:
7 45 0.14
8 48 0.15
9 201 0.61
10 8 0.02
11 4 0.01
12 22 0.07
13 2 0.01
ACGTcount: A:0.36, C:0.03, G:0.15, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:164016694 original size:16 final size:16
Alignment explanation
Indices: 164016588--164016697 Score: 107
Period size: 16 Copynumber: 6.9 Consensus size: 16
164016578 TATAATTAAG
*
164016588 TTATGTAAGTCATGTA
1 TTATGTAAGTTATGTA
164016604 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGT--A
* * *
164016622 TTATGTAAATCATGAA
1 TTATGTAAGTTATGTA
* ** **
164016638 TTTTG-ATCTT-TAAA
1 TTATGTAAGTTATGTA
164016652 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
164016668 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
164016684 TTATGTAAGTTATG
1 TTATGTAAGTTATG
164016698 AAATTTGAAC
Statistics
Matches: 76, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
14 7 0.09
15 5 0.07
16 51 0.67
18 13 0.17
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:164016785 original size:81 final size:81
Alignment explanation
Indices: 164016683--164016952 Score: 319
Period size: 81 Copynumber: 3.1 Consensus size: 81
164016673 TAAGTTATGT
164016683 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
164016748 GAAATTTGATCTTTAA
66 GAAATTTGATCTTTAA
* *
164016764 ATTATGTAAGTTATGAAATTTGAACTTTAACTTATTATGTAAGTTATGTAAATTTTGTAACTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
*
164016829 GAAATTTGAACTTTAAA
66 GAAATTTGATCTTT-AA
164016846 TTATTATGTAAGTTATGTAAATGTTGTAACTTATGAAATTTGGTCTTTAAATTATGTAAGTTATG
1 --ATTATGTAAGTTATG-AAAT-TTG-AACTT-T-AAA--------TT--ATTATGTAAGTTATG
* *
164016911 T--ATCATGTAAGTTATGAAATTTGATCTTTAA
49 TAAATTATGTAACTTATGAAATTTGATCTTTAA
164016942 ATTATGTAAGT
1 ATTATGTAAGT
164016953 CATGTATTAT
Statistics
Matches: 163, Mismatches: 8, Indels: 23
0.84 0.04 0.12
Matches are distributed among these distances:
81 76 0.47
82 2 0.01
84 15 0.09
85 4 0.02
86 3 0.02
87 5 0.03
88 1 0.01
89 2 0.01
94 11 0.07
96 2 0.01
97 26 0.16
99 16 0.10
ACGTcount: A:0.36, C:0.04, G:0.14, T:0.46
Consensus pattern (81 bp):
ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
GAAATTTGATCTTTAA
Found at i:164016792 original size:30 final size:30
Alignment explanation
Indices: 164016731--164016818 Score: 122
Period size: 30 Copynumber: 2.8 Consensus size: 30
164016721 GTAAGTTATG
* *
164016731 TAAATTATGTAACTTATGAAATTTGATCTT
1 TAAATTATGTAAGTTATGAAATTTGAACTT
164016761 TAAATTATGTAAGTTATGAAATTTGAACTT
1 TAAATTATGTAAGTTATGAAATTTGAACTT
164016791 TAACTTATTATGTAAGTTATGTAAATTT
1 TAA---ATTATGTAAGTTATG-AAATTT
164016819 TGTAACTTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
30 31 0.60
33 15 0.29
34 6 0.12
ACGTcount: A:0.38, C:0.05, G:0.11, T:0.47
Consensus pattern (30 bp):
TAAATTATGTAAGTTATGAAATTTGAACTT
Found at i:164016795 original size:51 final size:51
Alignment explanation
Indices: 164016693--164016849 Score: 133
Period size: 51 Copynumber: 3.1 Consensus size: 51
164016683 ATTATGTAAG
* *
164016693 TTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAA-TT--A-TGTAAC
1 TTATGAAATTTGATCTTT-AA--ATTATGTAAGTTATG-AAATTTGAACTTTAAC
164016744 TTATGAAATTTGATCTTTAAATTATGTAAGTTATGAAATTTGAACTTTAAC
1 TTATGAAATTTGATCTTTAAATTATGTAAGTTATGAAATTTGAACTTTAAC
* ** ** * * * * * *
164016795 TTATTATGTAAGTTATGTAAATTTTGTAACTTATGAAATTTGAACTTTAAA
1 TTATGAAATTTGATCTTTAAATTATGTAAGTTATGAAATTTGAACTTTAAC
164016846 TTAT
1 TTAT
164016850 TATGTAAGTT
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
47 3 0.03
48 17 0.19
50 3 0.03
51 66 0.74
ACGTcount: A:0.38, C:0.04, G:0.11, T:0.46
Consensus pattern (51 bp):
TTATGAAATTTGATCTTTAAATTATGTAAGTTATGAAATTTGAACTTTAAC
Found at i:164016847 original size:132 final size:130
Alignment explanation
Indices: 164016666--164016910 Score: 429
Period size: 132 Copynumber: 1.9 Consensus size: 130
164016656 GTAAGTTATG
*
164016666 TATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATG
1 TATTATGTAAGTTATGTATTATGTAACTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATG
164016731 TAAAT-TATGTAACTTATGAAATTTGATCTTTAAATTATGTAAGTTATGAAATTTGAACTTTAAC
66 TAAATGT-TGTAACTTATGAAATTTGATCTTTAAATTATGTAAGTTATGAAATTTGAACTTTAAC
164016795 T
130 T
*
164016796 TATTATGTAAGTTATGTAAATTTTGTAACTTATGAAATTTGAACTTTAAATTATTATGTAAGTTA
1 TATTATGTAAGTTATGT--ATTATGTAACTTATGAAATTTGAACTTTAAATTATTATGTAAGTTA
*
164016861 TGTAAATGTTGTAACTTATGAAATTTGGTCTTTAAATTATGTAAGTTATG
64 TGTAAATGTTGTAACTTATGAAATTTGATCTTTAAATTATGTAAGTTATG
164016911 TATCATGTAA
Statistics
Matches: 109, Mismatches: 3, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
130 17 0.16
132 91 0.83
133 1 0.01
ACGTcount: A:0.36, C:0.04, G:0.14, T:0.47
Consensus pattern (130 bp):
TATTATGTAAGTTATGTATTATGTAACTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATG
TAAATGTTGTAACTTATGAAATTTGATCTTTAAATTATGTAAGTTATGAAATTTGAACTTTAACT
Found at i:164016850 original size:51 final size:51
Alignment explanation
Indices: 164016761--164016946 Score: 249
Period size: 51 Copynumber: 3.7 Consensus size: 51
164016751 ATTTGATCTT
* *
164016761 TAAATTATGTAAGTTATGAAATTTGAACTTTAACTTATTATGTAAGTTATG
1 TAAATTATGTAACTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATG
*
164016812 TAAATTTTGTAACTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATG
1 TAAATTATGTAACTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATG
**
164016863 TAAATGT-TGTAACTTATGAAATTTGGTCTTT-AA--ATTATGTAAGTTATG
1 TAAAT-TATGTAACTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATG
* * *
164016911 T--ATCATGTAAGTTATGAAATTTGATCTTTAAATTAT
1 TAAATTATGTAACTTATGAAATTTGAACTTTAAATTAT
164016947 GTAAGTCATG
Statistics
Matches: 122, Mismatches: 8, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
46 24 0.20
47 2 0.02
48 16 0.13
49 2 0.02
50 2 0.02
51 75 0.61
52 1 0.01
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.46
Consensus pattern (51 bp):
TAAATTATGTAACTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATG
Found at i:164016949 original size:30 final size:30
Alignment explanation
Indices: 164016915--164017020 Score: 113
Period size: 30 Copynumber: 3.4 Consensus size: 30
164016905 GTTATGTATC
164016915 ATGTAAGTTATGAAATTTGATCTTTAAATT
1 ATGTAAGTTATGAAATTTGATCTTTAAATT
* * * ***
164016945 ATGTAAGTCATGTATTATGTAAGATAAGTAAATT
1 ATGTAAGTTATG-A-AAT-T-TGATCTTTAAATT
*
164016979 ATGTAAGTTATGAAATTTGAACTTTAAATT
1 ATGTAAGTTATGAAATTTGATCTTTAAATT
164017009 ATGTAAGTTATG
1 ATGTAAGTTATG
164017021 TATTATGTAA
Statistics
Matches: 59, Mismatches: 13, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
30 31 0.53
31 2 0.03
32 4 0.07
33 2 0.03
34 20 0.34
ACGTcount: A:0.39, C:0.03, G:0.16, T:0.42
Consensus pattern (30 bp):
ATGTAAGTTATGAAATTTGATCTTTAAATT
Found at i:164016982 original size:34 final size:32
Alignment explanation
Indices: 164016939--164017051 Score: 115
Period size: 34 Copynumber: 3.5 Consensus size: 32
164016929 ATTTGATCTT
*
164016939 TAAATTATGTAAGTCATGTATTATGTAAGATAAG
1 TAAATTATGTAAGTTATGTATTATGTAA-AT-AG
* * *
164016973 TAAATTATGTAAGTTATGAAATT-TG-AACT-T
1 TAAATTATGTAAGTTATG-TATTATGTAAATAG
164017003 TAAATTATGTAAGTTATGTATTATGTAAATTATG
1 TAAATTATGTAAGTTATGTATTATGTAAA-TA-G
*
164017037 TAAATTATGTGAGTT
1 TAAATTATGTAAGTT
164017052 GTTGGTGAAC
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
29 3 0.05
30 20 0.31
31 2 0.03
32 2 0.03
33 2 0.03
34 33 0.51
35 3 0.05
ACGTcount: A:0.39, C:0.02, G:0.16, T:0.43
Consensus pattern (32 bp):
TAAATTATGTAAGTTATGTATTATGTAAATAG
Found at i:164016983 original size:64 final size:64
Alignment explanation
Indices: 164016915--164017051 Score: 222
Period size: 64 Copynumber: 2.1 Consensus size: 64
164016905 GTTATGTATC
*
164016915 ATGTAAGTTATGAAATTTGATCTTTAAATTATGTAAGTCATGTATTATGTAAGA-TAAGTAAATT
1 ATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTCATGTATTATGTAA-ATTAAGTAAATT
* *
164016979 ATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTTATGTATTATGTAAATTATGTAAATT
1 ATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTCATGTATTATGTAAATTAAGTAAATT
*
164017043 ATGTGAGTT
1 ATGTAAGTT
164017052 GTTGGTGAAC
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
63 1 0.01
64 67 0.99
ACGTcount: A:0.38, C:0.02, G:0.16, T:0.44
Consensus pattern (64 bp):
ATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTCATGTATTATGTAAATTAAGTAAATT
Found at i:164017027 original size:16 final size:16
Alignment explanation
Indices: 164016896--164017038 Score: 82
Period size: 16 Copynumber: 9.1 Consensus size: 16
164016886 TGGTCTTTAA
164016896 ATTATGTAAGTTATGT
1 ATTATGTAAGTTATGT
* *
164016912 ATCATGTAAGTTATGAA
1 ATTATGTAAGTTATG-T
** **
164016929 ATT-TG-ATCTT-TAA
1 ATTATGTAAGTTATGT
*
164016942 ATTATGTAAGTCATGT
1 ATTATGTAAGTTATGT
* *
164016958 ATTATGTAAGATAAGT
1 ATTATGTAAGTTATGT
*
164016974 AAATTATGTAAGTTATGAA
1 --ATTATGTAAGTTATG-T
* **
164016993 ATT-TG-AACTT-TAA
1 ATTATGTAAGTTATGT
164017006 ATTATGTAAGTTATGT
1 ATTATGTAAGTTATGT
*
164017022 ATTATGTAAATTATGT
1 ATTATGTAAGTTATGT
164017038 A
1 A
164017039 AATTATGTGA
Statistics
Matches: 94, Mismatches: 23, Indels: 20
0.69 0.17 0.15
Matches are distributed among these distances:
13 8 0.09
14 6 0.06
15 13 0.14
16 49 0.52
17 5 0.05
18 13 0.14
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.44
Consensus pattern (16 bp):
ATTATGTAAGTTATGT
Found at i:164017090 original size:17 final size:17
Alignment explanation
Indices: 164017070--164017103 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
164017060 ACTTGAAAAA
*
164017070 ATATATTACTTTTGAAT
1 ATATATTAATTTTGAAT
164017087 ATATATTAATTTTGAAT
1 ATATATTAATTTTGAAT
164017104 TAGAAACATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (17 bp):
ATATATTAATTTTGAAT
Found at i:164018857 original size:26 final size:26
Alignment explanation
Indices: 164018822--164018957 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
164018812 TGATACAAAT
164018822 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
164018848 TAATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
* * *
164018874 TAATAATAGGTTAGGTAAGTGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
164018900 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
164018926 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
164018952 TGATAA
1 TGATAA
164018958 GAATTTCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:164020465 original size:25 final size:27
Alignment explanation
Indices: 164020423--164020475 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
164020413 AATTACTGTT
164020423 TACCCCTAGGTGCAAAATT-ACCGAAA
1 TACCCCTAGGTGCAAAATTGACCGAAA
** *
164020449 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGTGCAAAATTGACCGAAA
164020475 T
1 T
164020476 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.25
Consensus pattern (27 bp):
TACCCCTAGGTGCAAAATTGACCGAAA
Found at i:164026031 original size:25 final size:26
Alignment explanation
Indices: 164025937--164026069 Score: 207
Period size: 26 Copynumber: 5.2 Consensus size: 26
164025927 TGATACAAAT
164025937 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
164025963 TAATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
* * *
164025989 TAATAATAGGTTAGGTAAGTGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
164026015 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
164026040 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
164026065 TGATA
1 TGATA
164026070 GAATTTCATG
Statistics
Matches: 101, Mismatches: 6, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
25 46 0.46
26 55 0.54
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.38
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:164028739 original size:14 final size:13
Alignment explanation
Indices: 164028720--164028749 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
164028710 CAATATAATT
164028720 TTACTTCATATATA
1 TTACTTCATATA-A
164028734 TTACTTCATATAA
1 TTACTTCATATAA
164028747 TTA
1 TTA
164028750 TTATAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (13 bp):
TTACTTCATATAA
Found at i:164030401 original size:37 final size:37
Alignment explanation
Indices: 164030285--164030409 Score: 142
Period size: 37 Copynumber: 3.4 Consensus size: 37
164030275 CTATGCAACA
* * * *
164030285 GATGCACGAGGCGAAGACGATGGAGAAGATGGGTTGC
1 GATGCACGGGGAGAAGGCGATGGAGGAGATGGGTTGC
* * * * *
164030322 GATGAACGGTGTGAAGGCGATGGAGGGGATGGTTTGC
1 GATGCACGGGGAGAAGGCGATGGAGGAGATGGGTTGC
*
164030359 GATGCACGGGGAGAAGGCGATGGAGGAGATGGGTTGT
1 GATGCACGGGGAGAAGGCGATGGAGGAGATGGGTTGC
* *
164030396 AATGCACAGGGAGA
1 GATGCACGGGGAGA
164030410 TTTGGGGGAA
Statistics
Matches: 72, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 72 1.00
ACGTcount: A:0.27, C:0.10, G:0.46, T:0.16
Consensus pattern (37 bp):
GATGCACGGGGAGAAGGCGATGGAGGAGATGGGTTGC
Found at i:164030479 original size:24 final size:25
Alignment explanation
Indices: 164030429--164030479 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
164030419 AAACTTGCCG
* * *
164030429 ATTTGGGGAATTTGGGGATTTCTGA
1 ATTTAGGGAAATTGGGGATTTCAGA
164030454 ATTTAGGGAAATT-GGGATTTCAGA
1 ATTTAGGGAAATTGGGGATTTCAGA
164030478 AT
1 AT
164030480 CGGGGCAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.27, C:0.04, G:0.31, T:0.37
Consensus pattern (25 bp):
ATTTAGGGAAATTGGGGATTTCAGA
Found at i:164031251 original size:15 final size:15
Alignment explanation
Indices: 164031228--164031259 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
164031218 AAATAATAAT
164031228 TTATATATATTTATC
1 TTATATATATTTATC
*
164031243 TTATTTATATTTATC
1 TTATATATATTTATC
164031258 TT
1 TT
164031260 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATATATATTTATC
Found at i:164031420 original size:18 final size:17
Alignment explanation
Indices: 164031394--164031435 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
164031384 CACTGTAACC
*
164031394 CCTAAACCAACCATAAAT
1 CCTAAACC-ACCATAAAG
*
164031412 CCTAGACCACCATAAAG
1 CCTAAACCACCATAAAG
164031429 CCTAAAC
1 CCTAAAC
164031436 TATAAACTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.45, C:0.36, G:0.05, T:0.14
Consensus pattern (17 bp):
CCTAAACCACCATAAAG
Found at i:164033254 original size:2 final size:2
Alignment explanation
Indices: 164033247--164033274 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
164033237 GTATGTTTTA
164033247 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
164033275 TCTTATGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:164049470 original size:47 final size:47
Alignment explanation
Indices: 164049401--164049576 Score: 211
Period size: 47 Copynumber: 3.8 Consensus size: 47
164049391 TGTAACCCGC
*
164049401 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGACAT
*
164049448 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT--ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGACAT
* * *
164049498 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCG-CAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGACAT
*
164049541 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
164049577 ATGCTCAACC
Statistics
Matches: 111, Mismatches: 8, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 28 0.25
47 62 0.56
48 2 0.02
49 2 0.02
50 5 0.05
52 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGACAT
Found at i:164049568 original size:93 final size:94
Alignment explanation
Indices: 164049408--164049580 Score: 312
Period size: 93 Copynumber: 1.9 Consensus size: 94
164049398 CGCCCATAAG
* *
164049408 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGACATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGACATCCATAAGTGAACTCGGACTCAACTC
164049473 AACGAGTTCGGATGCCTAGTTACATCTCA
66 AACGAGTTCGGATGCCTAGTTACATCTCA
*
164049502 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCG-CATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGACATCCATAAGTGAACTCGGACTCAACTC
164049566 AACGAGTTCGGATGC
66 AACGAGTTCGGATGC
164049581 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
93 43 0.57
94 33 0.43
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (94 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGACATCCATAAGTGAACTCGGACTCAACTC
AACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:164051278 original size:40 final size:39
Alignment explanation
Indices: 164051233--164051362 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
164051223 CGGAATATAA
164051233 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
164051273 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
164051313 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
164051353 CCGGATATAA
1 CCGGATATAA
164051363 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:164051377 original size:40 final size:40
Alignment explanation
Indices: 164051249--164051399 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
164051239 ATAACCATGT
* * *
164051249 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
164051289 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
164051329 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
164051369 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
164051400 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 15 0.16
40 74 0.81
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:164051383 original size:80 final size:79
Alignment explanation
Indices: 164051249--164051397 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
164051239 ATAACCATGT
*
164051249 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
164051314 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
164051329 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
164051392 CCGGAT
64 CCGGAT
164051398 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:164059240 original size:40 final size:39
Alignment explanation
Indices: 164059195--164059324 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
164059185 CGGAATATAA
164059195 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
164059235 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
164059275 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
164059315 CCGGATATAA
1 CCGGATATAA
164059325 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:164059339 original size:40 final size:40
Alignment explanation
Indices: 164059211--164059362 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
164059201 ATAACCATGT
* * *
164059211 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
164059251 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
164059291 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
164059331 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
164059363 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:164059345 original size:80 final size:80
Alignment explanation
Indices: 164059211--164059360 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
164059201 ATAACCATGT
*
164059211 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
164059275 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
164059291 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
164059354 CCCGGAT
64 CCCGGAT
164059361 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:164070128 original size:19 final size:21
Alignment explanation
Indices: 164070105--164070159 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 21
164070095 CTTTCTTTTG
* *
164070105 TTTCTTTTTCTTTTTTTC-TC
1 TTTCTTTTTCTTTTTTACAAC
164070125 -TTCTTTTAT-TTTTTTACAAC
1 TTTCTTTT-TCTTTTTTACAAC
164070145 TTTCTTTTTCTTTTT
1 TTTCTTTTTCTTTTT
164070160 CTTTCATTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
19 14 0.48
20 3 0.10
21 12 0.41
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTCTTTTTCTTTTTTACAAC
Found at i:164073735 original size:16 final size:18
Alignment explanation
Indices: 164073714--164073746 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
164073704 CATACTAGCT
164073714 CCAAAAT-ATAG-TAGTA
1 CCAAAATGATAGATAGTA
164073730 CCAAAATGATAGATAGT
1 CCAAAATGATAGATAGT
164073747 GTGACAAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (18 bp):
CCAAAATGATAGATAGTA
Found at i:164075681 original size:41 final size:41
Alignment explanation
Indices: 164075553--164075745 Score: 243
Period size: 40 Copynumber: 4.8 Consensus size: 41
164075543 GGATATAGCT
* * * *
164075553 ACTCGCTC-AATGCCTTCGGGACATAGCCC-GAATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
*
164075592 ACTCACACAAATGCCTTCGGGACTTAGCCCGG-ATGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
164075632 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
* * * * *
164075673 ACTCGCACAAATGCCTTCAGGACATAGCCCGGAA-CTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
164075713 ACTAGCGCA-AAATGCCTTCGGGACTTAGCCCGG
1 ACT--CGCACAAATGCCTTCGGGACTTAGCCCGG
164075746 TTATCATCCA
Statistics
Matches: 136, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 6 0.04
40 63 0.46
41 63 0.46
42 4 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (41 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
Found at i:164075701 original size:81 final size:81
Alignment explanation
Indices: 164075553--164075745 Score: 248
Period size: 81 Copynumber: 2.4 Consensus size: 81
164075543 GGATATAGCT
* * * * *
164075553 ACTCGCTC-AATGCCTTCGGGACATAGCCC-GAATATAGTAACTCACACAAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAATAACTCACACAAATGCCTTCAGGACA
**
164075616 TAGCCCGGATGTAATA
66 TAGCCCGGAACTAATA
* *
164075632 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATAACTCGCACAAATGCCTTCAGGACA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAATAACTCACACAAATGCCTTCAGGACA
* *
164075697 TAGCCCGGAACTAGTC
66 TAGCCCGGAACTAATA
164075713 ACTAGCGCA-AAATGCCTTCGGGACTTAGCCCGG
1 ACT--CGCACAAATGCCTTCGGGACTTAGCCCGG
164075746 TTATCATCCA
Statistics
Matches: 99, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
79 7 0.07
80 20 0.20
81 44 0.44
82 24 0.24
83 4 0.04
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (81 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAATAACTCACACAAATGCCTTCAGGACA
TAGCCCGGAACTAATA
Found at i:164083731 original size:40 final size:40
Alignment explanation
Indices: 164083638--164083854 Score: 284
Period size: 40 Copynumber: 5.5 Consensus size: 40
164083628 AAGCCAAGTA
* * *
164083638 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
164083676 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
164083716 CCTTCGGGACTTAGCCCGGATATA-TAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
164083755 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
164083795 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
164083836 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
164083855 TTATCATCCA
Statistics
Matches: 162, Mismatches: 10, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
38 12 0.07
39 54 0.33
40 68 0.42
41 24 0.15
42 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:164083770 original size:79 final size:79
Alignment explanation
Indices: 164083638--164083854 Score: 282
Period size: 79 Copynumber: 2.7 Consensus size: 79
164083628 AAGCCAAGTA
* * * * *
164083638 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
*
164083701 TAACTCGCACCAATG
65 TAACTCGCACAAATG
*
164083716 CCTTCGGGACTTAGCCCGGATATA-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAA
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
164083780 TAACTCGCACAAATG
65 TAACTCGCACAAATG
164083795 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACT--CGCACAAATGCCTTCGGGACTTAGCCCGG
164083855 TTATCATCCA
Statistics
Matches: 124, Mismatches: 8, Indels: 11
0.87 0.06 0.08
Matches are distributed among these distances:
77 1 0.01
78 20 0.16
79 71 0.57
80 4 0.03
81 24 0.19
82 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAAT
AACTCGCACAAATG
Found at i:164093149 original size:39 final size:39
Alignment explanation
Indices: 164093095--164093238 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
164093085 GAATGTTCGA
164093095 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
164093134 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
164093173 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
164093212 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
164093239 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:164093185 original size:78 final size:79
Alignment explanation
Indices: 164093096--164093278 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
164093086 AATGTTCGAG
164093096 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
164093160 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
164093174 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
164093239 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
164093253 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
164093279 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:164101481 original size:25 final size:25
Alignment explanation
Indices: 164101452--164101499 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
164101442 TTATAATATG
* * *
164101452 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
164101477 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
164101500 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:164101602 original size:20 final size:20
Alignment explanation
Indices: 164101542--164101602 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
164101532 ATAAATATGG
*
164101542 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
164101562 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
164101582 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
164101602 T
1 T
164101603 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:164101679 original size:24 final size:24
Alignment explanation
Indices: 164101652--164101794 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
164101642 GAGGAAGTGA
164101652 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
164101676 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
164101700 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
164101723 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
164101747 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
164101771 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
164101795 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:164101745 original size:47 final size:47
Alignment explanation
Indices: 164101652--164101794 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
164101642 GAGGAAGTGA
164101652 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
164101700 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
164101747 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
164101795 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:164101768 original size:71 final size:72
Alignment explanation
Indices: 164101652--164101795 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
164101642 GAGGAAGTGA
*
164101652 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
164101715 CCAGTTAT
65 CCAGTTAT
** * *
164101723 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
164101788 CAGTTAT
66 CAGTTAT
164101795 A
1 A
164101796 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:164102021 original size:31 final size:31
Alignment explanation
Indices: 164101986--164102049 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
164101976 CGTTTACAGT
164101986 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
164102017 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
164102048 AA
1 AA
164102050 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:164102078 original size:38 final size:38
Alignment explanation
Indices: 164102003--164102078 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
164101993 TCGGCCCAGT
* *
164102003 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTACGGCCCAGTAGTATGA
164102041 AATATGAAATATGAAAAGGGCTACGGCCCAGT-GTATGA
1 AATATGAAATATGAAAA-GGCTACGGCCCAGTAGTATGA
164102079 TTGAGATTGG
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
38 22 0.63
39 13 0.37
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.24
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTACGGCCCAGTAGTATGA
Found at i:164104861 original size:6 final size:6
Alignment explanation
Indices: 164104850--164104951 Score: 104
Period size: 6 Copynumber: 16.8 Consensus size: 6
164104840 AACCAAAATG
*
164104850 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
164104898 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
164104947 AGAAT
1 AGAAT
164104952 ATGAATGCAA
Statistics
Matches: 81, Mismatches: 6, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
5 6 0.07
6 68 0.84
7 5 0.06
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:164104865 original size:30 final size:29
Alignment explanation
Indices: 164104829--164104951 Score: 140
Period size: 30 Copynumber: 4.1 Consensus size: 29
164104819 AAGAAACATT
* * *
164104829 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
164104859 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
164104889 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
*
164104919 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
164104950 AT
1 AT
164104952 ATGAATGCAA
Statistics
Matches: 81, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
29 1 0.01
30 55 0.68
31 25 0.31
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:164105106 original size:27 final size:26
Alignment explanation
Indices: 164105069--164105134 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
164105059 AGCATGGCTG
* *
164105069 CCAGAACAGATATCGTGATAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
*
164105095 CCAGATACAGATATTGTGACAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
164105122 CCAGAATCAGATA
1 CCAGAA-CAGATA
164105135 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:164105355 original size:22 final size:22
Alignment explanation
Indices: 164105307--164105365 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
164105297 GTAAATACGT
*
164105307 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
164105329 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
164105351 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
164105366 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:164105497 original size:27 final size:26
Alignment explanation
Indices: 164105453--164105535 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
164105443 TCGATCGGTC
* * *
164105453 AACAGATATTGTGACAGAGTCACCAG
1 AACAAATATTGTGGCAGAGCCACCAG
164105479 ATACAAATATTGTGGCAGAGCCACCAG
1 A-ACAAATATTGTGGCAGAGCCACCAG
* **
164105506 AACAGATATTTGTGGCTTAGCCACCAG
1 AACAAATA-TTGTGGCAGAGCCACCAG
164105533 AAC
1 AAC
164105536 GCTTCCTCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 7 0.14
27 42 0.86
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAAATATTGTGGCAGAGCCACCAG
Found at i:164105764 original size:27 final size:27
Alignment explanation
Indices: 164105734--164105902 Score: 185
Period size: 27 Copynumber: 6.3 Consensus size: 27
164105724 AGGGCAAAAT
* * * *
164105734 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
164105761 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
164105788 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* **
164105815 GATAATTCTACCCTACGGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
164105842 GGTAATTCTACCCTATAAGAGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * * *
164105869 AGTAATTTTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
164105896 GGTAATT
1 GGTAATT
164105903 TCACAATTAA
Statistics
Matches: 120, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 120 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:164105945 original size:27 final size:27
Alignment explanation
Indices: 164105912--164106397 Score: 550
Period size: 27 Copynumber: 18.0 Consensus size: 27
164105902 TTCACAATTA
* *
164105912 AGGGTAAAACAGTAATTTTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* *
164105939 AGGGTAAAACGATAATTTTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
* * *
164105966 AGGGTAAACCAGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* * **
164105993 AGGGTAAAACGATAATTTTACAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
*
164106020 AGGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
**
164106047 AGGGTAAAATAGTAATTCTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
*
164106074 AGGGTAAAACGATAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* *
164106101 AAGGTAAAATGGTAATTCTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
*
164106128 AGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* * ** *
164106155 AGGGTAAAACCGTAATTTTACAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* *
164106182 AGGGTAAAATGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
**
164106209 AGGGTAAAATAGTAATTCTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
*
164106236 AGGGTAAAATGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
*
164106263 AGGGTAAAATGGTAATTCTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
** *
164106290 AGGGTAAAATAGTAATTCTGTAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* **
164106317 AGGGTAAAACGGTAATTTTAAAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* *
164106344 AGGGTAAAACGATAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
*
164106371 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
164106398 GGAGTACTTT
Statistics
Matches: 398, Mismatches: 51, Indels: 20
0.85 0.11 0.04
Matches are distributed among these distances:
26 5 0.01
27 389 0.98
28 4 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTCTGTAAATCG
Found at i:164107349 original size:2 final size:2
Alignment explanation
Indices: 164107342--164107367 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
164107332 CATGTTACGC
164107342 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
164107368 TAGTTAAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:164109541 original size:2 final size:2
Alignment explanation
Indices: 164109524--164109569 Score: 65
Period size: 2 Copynumber: 22.5 Consensus size: 2
164109514 TTGTGAATTG
* *
164109524 TA TA AA TA TCA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
164109567 TA T
1 TA T
164109570 GTGACATTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:164110873 original size:30 final size:30
Alignment explanation
Indices: 164110811--164110873 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
164110801 TCATTTTACG
* * *
164110811 AGTTTAGGGGCTAAATTGAAAATATGTGAA
1 AGTTTAGGGGCTAAAATGAAAAAATGTAAA
*
164110841 AGTTTAGGGG-TAAAAATGAAAAAATTTAAA
1 AGTTTAGGGGCT-AAAATGAAAAAATGTAAA
164110871 AGT
1 AGT
164110874 ATGATTTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 1 0.04
30 27 0.96
ACGTcount: A:0.46, C:0.02, G:0.24, T:0.29
Consensus pattern (30 bp):
AGTTTAGGGGCTAAAATGAAAAAATGTAAA
Found at i:164120158 original size:92 final size:91
Alignment explanation
Indices: 164120002--164120170 Score: 311
Period size: 92 Copynumber: 1.8 Consensus size: 91
164119992 GCCCCTAAGT
*
164120002 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
164120067 GAGTTCGGATGCCTAGTTACATTCAC
66 GAGTTCGGATGCCTAGTTACATTCAC
*
164120093 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
164120158 CGAGTTCGGATGC
65 CGAGTTCGGATGC
164120171 TCAACCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
91 27 0.36
92 48 0.64
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTCAC
Found at i:164120167 original size:46 final size:45
Alignment explanation
Indices: 164119997--164120166 Score: 220
Period size: 46 Copynumber: 3.7 Consensus size: 45
164119987 AACCCGCCCC
* *
164119997 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCATCCA
* *
164120042 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC-A--TCCA
* *
164120088 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCATCCA
164120134 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
164120167 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 10, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 34 0.32
46 62 0.58
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCATCCA
Found at i:164120186 original size:46 final size:46
Alignment explanation
Indices: 164119999--164120186 Score: 151
Period size: 46 Copynumber: 4.1 Consensus size: 46
164119989 CCCGCCCCTA
* * * *
164119999 AGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
164120043 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
164120091 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
164120136 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
164120182 AGTGA
1 AGTGA
164120187 CATGTCACTT
Statistics
Matches: 116, Mismatches: 12, Indels: 29
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 32 0.28
46 65 0.56
47 1 0.01
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:164131962 original size:40 final size:40
Alignment explanation
Indices: 164131835--164131963 Score: 165
Period size: 39 Copynumber: 3.3 Consensus size: 40
164131825 ACACTAGGAT
* * *
164131835 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGC-TAAGC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGCTTAATC
* *
164131874 CCGAAGGCATTTGTGCAAGTTACTAAACCCGGG-TTAATC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGCTTAATC
* *
164131913 CCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCATC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCCGGGCTTAATC
164131953 CCGAAGGCATT
1 CCGAAGGCATT
164131964 TGAACGAGTC
Statistics
Matches: 78, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 60 0.77
40 18 0.23
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.22
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGCTTAATC
Found at i:164138681 original size:26 final size:26
Alignment explanation
Indices: 164138645--164138780 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
164138635 ACATGAATTC
164138645 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
164138671 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
164138697 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
164138723 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
164138749 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
164138775 TTATCA
1 TTATCA
164138781 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:164140222 original size:136 final size:136
Alignment explanation
Indices: 164139978--164140262 Score: 552
Period size: 136 Copynumber: 2.1 Consensus size: 136
164139968 CATTGGGCCT
**
164139978 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
164140043 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
164140108 ATATGC
131 ATATGC
164140114 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
164140179 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
164140244 ATATGC
131 ATATGC
164140250 AAGCCCATTTGGG
1 AAGCCCATTTGGG
164140263 GAGACTACTC
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
136 147 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:164142097 original size:26 final size:26
Alignment explanation
Indices: 164142039--164142147 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
164142029 ACATGAATTC
164142039 TTATCATGAAACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
164142064 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
164142090 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
*
164142116 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
164142142 TTATCA
1 TTATCA
164142148 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 22 0.28
26 56 0.72
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:164145565 original size:28 final size:27
Alignment explanation
Indices: 164145534--164145598 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
164145524 CATTTTTTTT
164145534 AAATTGTTTTATACATTATTAATTTTAA
1 AAATTGTTTT-TACATTATTAATTTTAA
* * * *
164145562 AAATTCATTTTTACTTTATTTATTTTCA
1 AAATT-GTTTTTACATTATTAATTTTAA
*
164145590 AACTTGTTT
1 AAATTGTTT
164145599 ATTATCTTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
27 3 0.10
28 23 0.77
29 4 0.13
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.57
Consensus pattern (27 bp):
AAATTGTTTTTACATTATTAATTTTAA
Found at i:164148573 original size:22 final size:22
Alignment explanation
Indices: 164148548--164148591 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
164148538 ATTTTAATGA
164148548 TTTT-TAACTTTAAAAATAATTT
1 TTTTATAACTTTAAAAA-AATTT
*
164148570 TTTTATAATTTTAAAAAAATTT
1 TTTTATAACTTTAAAAAAATTT
164148592 AAAAATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
TTTTATAACTTTAAAAAAATTT
Found at i:164149240 original size:26 final size:26
Alignment explanation
Indices: 164149196--164149303 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
164149186 TGATACAAAT
164149196 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * * *
164149222 TGACAATGGATTAGATAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
164149248 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
164149274 TAATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
164149300 TGAT
1 TGAT
164149304 TGGAATTTCA
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:164150664 original size:37 final size:37
Alignment explanation
Indices: 164150623--164150696 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
164150613 GCCCTCGATA
164150623 TTTTTGGGCTTAATGGGCCAAAATTGGAATGATGGGC
1 TTTTTGGGCTTAATGGGCCAAAATTGGAATGATGGGC
164150660 TTTTTGGGCTTAATGGGCCAAAATTGGAATGATGGGC
1 TTTTTGGGCTTAATGGGCCAAAATTGGAATGATGGGC
164150697 CAACGGGCCC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.11, G:0.32, T:0.32
Consensus pattern (37 bp):
TTTTTGGGCTTAATGGGCCAAAATTGGAATGATGGGC
Found at i:164157313 original size:17 final size:17
Alignment explanation
Indices: 164157287--164157320 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
164157277 TGATATTTTT
164157287 CTATTATTTTGTTGTTG
1 CTATTATTTTGTTGTTG
*
164157304 CTATTGTTTTGTTGTTG
1 CTATTATTTTGTTGTTG
164157321 TTTTTGCCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.09, C:0.06, G:0.21, T:0.65
Consensus pattern (17 bp):
CTATTATTTTGTTGTTG
Found at i:164157457 original size:83 final size:84
Alignment explanation
Indices: 164157315--164157483 Score: 322
Period size: 83 Copynumber: 2.0 Consensus size: 84
164157305 TATTGTTTTG
164157315 TTGTTGTTTTTGCCATTTAGGTGTTGTTTTTTTCTGCATTTTTACTATTCTTTCGCTTCTGTTTT
1 TTGTTGTTTTTGCCATTTAGGTGTTGTTTTTTTCTGCATTTTTACTATTCTTTCGCTTCTGTTTT
164157380 TAATGTTATTTTCTTGTAA
66 TAATGTTATTTTCTTGTAA
*
164157399 TTGTTGTTTTTGCCATTTAGGTGTTG-TTTTTTGTGCATTTTTACTATTCTTTCGCTTCTGTTTT
1 TTGTTGTTTTTGCCATTTAGGTGTTGTTTTTTTCTGCATTTTTACTATTCTTTCGCTTCTGTTTT
164157463 TAATGTTATTTTCTTGTAA
66 TAATGTTATTTTCTTGTAA
164157482 TT
1 TT
164157484 TTTAATATTA
Statistics
Matches: 84, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
83 58 0.69
84 26 0.31
ACGTcount: A:0.12, C:0.11, G:0.15, T:0.62
Consensus pattern (84 bp):
TTGTTGTTTTTGCCATTTAGGTGTTGTTTTTTTCTGCATTTTTACTATTCTTTCGCTTCTGTTTT
TAATGTTATTTTCTTGTAA
Found at i:164158168 original size:23 final size:23
Alignment explanation
Indices: 164158132--164158176 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
164158122 TCCGGCCGAC
164158132 GCGACACTCAACGT-TCCGACGAT
1 GCGACACTCAACGTCT-CGACGAT
**
164158155 GCGACACTGGACGTCTCGACGA
1 GCGACACTCAACGTCTCGACGA
164158177 GGTGACACAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.24, C:0.33, G:0.27, T:0.16
Consensus pattern (23 bp):
GCGACACTCAACGTCTCGACGAT
Found at i:164158786 original size:14 final size:14
Alignment explanation
Indices: 164158762--164158803 Score: 66
Period size: 14 Copynumber: 2.9 Consensus size: 14
164158752 GCATATAATA
164158762 AATTATAAAATAAAT
1 AATT-TAAAATAAAT
*
164158777 AATTTAAAATAATT
1 AATTTAAAATAAAT
164158791 AATTTAAAATAAA
1 AATTTAAAATAAA
164158804 ACATAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 21 0.84
15 4 0.16
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AATTTAAAATAAAT
Found at i:164160819 original size:32 final size:32
Alignment explanation
Indices: 164160783--164160872 Score: 108
Period size: 32 Copynumber: 2.8 Consensus size: 32
164160773 GAATTTCTAT
*
164160783 ACATACATGTACTATATTGTACCAATTTTCGC
1 ACATACATGTACCATATTGTACCAATTTTCGC
* *
164160815 ACATACCTGTACCATATTGTACCAATTTTCGT
1 ACATACATGTACCATATTGTACCAATTTTCGC
* * * * *
164160847 AGATACCTGTATCATCTAGTACCAAT
1 ACATACATGTACCATATTGTACCAAT
164160873 CTCATACTCA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 51 1.00
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (32 bp):
ACATACATGTACCATATTGTACCAATTTTCGC
Found at i:164160963 original size:28 final size:28
Alignment explanation
Indices: 164160923--164160992 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 28
164160913 CAATGTATCA
164160923 CACACT-AGATGCCATACCCGATACCTT-G
1 CACACTAAG-TGCCATACCCGATA-CTTCG
*
164160951 CACACTAAGTGCCATCCCCGATACTTCG
1 CACACTAAGTGCCATACCCGATACTTCG
**
164160979 CACGTTAAGTGCCA
1 CACACTAAGTGCCA
164160993 CATATAATTA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 3 0.08
28 32 0.86
29 2 0.05
ACGTcount: A:0.27, C:0.36, G:0.16, T:0.21
Consensus pattern (28 bp):
CACACTAAGTGCCATACCCGATACTTCG
Found at i:164163246 original size:3 final size:3
Alignment explanation
Indices: 164163235--164163349 Score: 87
Period size: 3 Copynumber: 39.3 Consensus size: 3
164163225 GATGAAAACG
* * *
164163235 ATA AAA ATA ATA GTA ATA CA-A ATA ATA ATA ATA ATA GTA A-A AT-
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
164163278 ATA ATA ATA CTA AT- TTA ATA GTA GTA ATA ATA ATA ATA A-A GTA ATGA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
* *
164163325 ATA ATG ATA ATA GTA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
164163350 AGTGAAAAAA
Statistics
Matches: 87, Mismatches: 18, Indels: 14
0.73 0.15 0.12
Matches are distributed among these distances:
2 7 0.08
3 76 0.87
4 4 0.05
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:164163749 original size:3 final size:3
Alignment explanation
Indices: 164163722--164163878 Score: 86
Period size: 3 Copynumber: 50.0 Consensus size: 3
164163712 AAGTATAAAT
* * * *
164163722 ATA ATG ATA ATA GTA ATA ATG ATA ATA ATA AAA GATGA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -AT-A ATA ATA ATA
* * *
164163769 ATA ATA ATA ATA ATA CA-A ATA CTA ATA TATA CGTAA AGA ATA ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA -AT-A ATA ATA ATA ATA
* * * * *
164163817 ATA ATG GTA ATA AGA A-A ATA ATA GTA ATA ACA ATA CATTA ATA TATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -A-TA ATA -ATA
*
164163864 TTA AT- ATCA ATA ATA
1 ATA ATA AT-A ATA ATA
164163879 TTAGTAGGTA
Statistics
Matches: 116, Mismatches: 26, Indels: 24
0.70 0.16 0.14
Matches are distributed among these distances:
2 5 0.04
3 92 0.79
4 15 0.13
5 4 0.03
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:164164774 original size:16 final size:17
Alignment explanation
Indices: 164164755--164164788 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
164164745 AAAGAAAGAT
164164755 AAAAGAAAAAT-AAATC
1 AAAAGAAAAATGAAATC
164164771 AAAAGAAAAATGAAATC
1 AAAAGAAAAATGAAATC
164164788 A
1 A
164164789 CCTTTGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.74, C:0.06, G:0.09, T:0.12
Consensus pattern (17 bp):
AAAAGAAAAATGAAATC
Found at i:164165615 original size:42 final size:43
Alignment explanation
Indices: 164165569--164165667 Score: 128
Period size: 43 Copynumber: 2.3 Consensus size: 43
164165559 TTCCTTACCA
*
164165569 CTTAGGGGTTT-AGATTTGTAAATTCAACCTGTTACCCTACTG
1 CTTAGGGGTTTAAGATCTGTAAATTCAACCTGTTACCCTACTG
* *** *
164165611 CTTAGGGGTTTAAGGTCTGTAAATTTGGCTTGTTACCCTACTG
1 CTTAGGGGTTTAAGATCTGTAAATTCAACCTGTTACCCTACTG
*
164165654 CTTAGGGGGTTAAG
1 CTTAGGGGTTTAAG
164165668 CCCATCATCT
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 11 0.22
43 38 0.78
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.37
Consensus pattern (43 bp):
CTTAGGGGTTTAAGATCTGTAAATTCAACCTGTTACCCTACTG
Found at i:164166595 original size:26 final size:26
Alignment explanation
Indices: 164166558--164166693 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
164166548 TGATACAAAT
* *
164166558 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
164166584 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
164166610 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
164166636 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
164166662 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
164166688 TGATAA
1 TGATAA
164166694 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:164168231 original size:26 final size:25
Alignment explanation
Indices: 164168179--164168231 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 25
164168169 TTTACAGTTT
164168179 TACCCCTAGTAGATAAATTACCGAAA
1 TACCCCTAG-AGATAAATTACCGAAA
*
164168205 TACCCCTAG-GATTAAATTGACCTAAA
1 TACCCCTAGAGA-TAAATT-ACCGAAA
164168231 T
1 T
164168232 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 2 0.08
25 6 0.25
26 16 0.67
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (25 bp):
TACCCCTAGAGATAAATTACCGAAA
Found at i:164168615 original size:33 final size:34
Alignment explanation
Indices: 164168542--164168615 Score: 89
Period size: 32 Copynumber: 2.2 Consensus size: 34
164168532 TATGGGCCAT
*
164168542 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* **
164168576 ATTGTTATCTGAA-AA-GGGCTTTGGCCCAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
164168609 ACTGTTA
1 ACTGTTA
164168616 CCCAAATGGG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
32 13 0.38
33 9 0.26
34 12 0.35
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:164168724 original size:136 final size:137
Alignment explanation
Indices: 164168479--164168764 Score: 493
Period size: 136 Copynumber: 2.1 Consensus size: 137
164168469 GAGTAGTCTC
164168479 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTAAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTAAAATGGGCCTATGGGCCATAC
* * *
164168544 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTTATCTGAAAAGGGCTTTGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
*
164168609 ACTGTTA
131 ACTATTA
* *
164168616 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTAAAATGGGCCTATGGGCCATAC
164168680 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
164168745 ACTATTA
131 ACTATTA
**
164168752 CCTGAATGGGCTT
1 CCCAAATGGGCTT
164168765 AGGCCCAATG
Statistics
Matches: 141, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
136 121 0.86
137 20 0.14
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTAAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTATTA
Found at i:164169093 original size:39 final size:39
Alignment explanation
Indices: 164169039--164169121 Score: 157
Period size: 39 Copynumber: 2.1 Consensus size: 39
164169029 TATTACTAAG
*
164169039 TTAGGTATTACTTATTTTAACTGTTGAAACTGGATAGCT
1 TTAGGTATTACTTATTGTAACTGTTGAAACTGGATAGCT
164169078 TTAGGTATTACTTATTGTAACTGTTGAAACTGGATAGCT
1 TTAGGTATTACTTATTGTAACTGTTGAAACTGGATAGCT
164169117 TTAGG
1 TTAGG
164169122 GCGCGTTTTC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (39 bp):
TTAGGTATTACTTATTGTAACTGTTGAAACTGGATAGCT
Found at i:164179421 original size:46 final size:46
Alignment explanation
Indices: 164179371--164179546 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
164179361 ATGGTTGGCA
164179371 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
164179417 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
164179464 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
164179510 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
164179547 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:164179526 original size:93 final size:93
Alignment explanation
Indices: 164179367--164179538 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
164179357 TAGGATGGTT
* *
164179367 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
164179432 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
164179460 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
164179525 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
164179539 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:164182530 original size:15 final size:15
Alignment explanation
Indices: 164182491--164182569 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
164182481 GTATCTTGGG
*
164182491 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
164182506 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
164182521 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
164182535 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
164182550 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
164182564 TTTCTT
1 TTTCTT
164182570 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:164182554 original size:29 final size:29
Alignment explanation
Indices: 164182482--164182568 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
164182472 CATAGTATCG
* * * *
164182482 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
164182512 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
164182541 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
164182569 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Done.