Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 529 of 770
Found at i:164185001 original size:46 final size:46
Alignment explanation
Indices: 164184946--164185126 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
164184936 TAGGATGGTT
164184946 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
164184992 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
164185038 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
164185085 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
164185127 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:164185107 original size:93 final size:93
Alignment explanation
Indices: 164184948--164185118 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
164184938 GGATGGTTGA
* *
164184948 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
164185013 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
164185041 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
164185106 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
164185119 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:164188117 original size:48 final size:48
Alignment explanation
Indices: 164188041--164188256 Score: 220
Period size: 48 Copynumber: 4.5 Consensus size: 48
164188031 TGTGTAAGCC
* * *
164188041 AGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGTT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTATGAGAGCT
* * *** *
164188089 AGTGCAAGACCATGTCT-GAGACATGGCATCGGCCTCAATATGTGAGCT
1 AGTGTAAGACCATGTCTGGA-ACATGGCATCGGCATTGTTATGAGAGCT
* * * *
164188137 AGTGTAAGACTATATTTGGAACATGGCATCGGTATTGTTATGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTATGAGAGCT
* *** * *
164188185 AGTGTAAGACCATGTCTAGG-ACATGGCATCGGCCTCAATATGTGAGCC
1 AGTGTAAGACCATGTCT-GGAACATGGCATCGGCATTGTTATGAGAGCT
*
164188233 AGTGTAAGACCATGTTTGGAACAT
1 AGTGTAAGACCATGTCTGGAACAT
164188257 AAGACCATTT
Statistics
Matches: 134, Mismatches: 30, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
47 4 0.03
48 126 0.94
49 4 0.03
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTATGAGAGCT
Found at i:164188208 original size:96 final size:96
Alignment explanation
Indices: 164188037--164188256 Score: 361
Period size: 96 Copynumber: 2.3 Consensus size: 96
164188027 AGGTTGTGTA
*
164188037 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGTTAGTGCAAGACCAT
1 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCTAGTGCAAGACCAT
164188102 GTCTGAGACATGGCATCGGCCTCAATATGTG
66 GTCTGAGACATGGCATCGGCCTCAATATGTG
* * * ** *
164188133 AGCTAGTGTAAGACTATATTTGGAACATGGCATCGGTATTGTTATGAGAGCTAGTGTAAGACCAT
1 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCTAGTGCAAGACCAT
164188198 GTCT-AGGACATGGCATCGGCCTCAATATGTG
66 GTCTGA-GACATGGCATCGGCCTCAATATGTG
164188229 AGCCAGTGTAAGACCATGTTTGGAACAT
1 AGCCAGTGTAAGACCATGTTTGGAACAT
164188257 AAGACCATTT
Statistics
Matches: 113, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
95 1 0.01
96 112 0.99
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (96 bp):
AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCTAGTGCAAGACCAT
GTCTGAGACATGGCATCGGCCTCAATATGTG
Found at i:164195780 original size:48 final size:48
Alignment explanation
Indices: 164195727--164196187 Score: 427
Period size: 48 Copynumber: 9.6 Consensus size: 48
164195717 TGATACTAGG
* *
164195727 GTTATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * * *
164195775 GTTATGAGAGCTAGTGTAAGATCATGTTTGGGACATGGCATAGGCCTC
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
** * * * *
164195823 AATATGTGAGCCAGCGTAAGACCATGTTTGGAACATGGCATAGGCATT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * * * * * *
164195871 GTTACGAGAGCTAGTGTAAGATCACGTTTGGGATATGGTATCGGCCTC
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
** * * ** * *
164195919 AATATGTGAGCCAACGTAAGACCATGTTTGGAGCATGGCATCGACATT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * *
164195967 GTTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCACCGGCCTT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
** * * * *
164196015 AATATGTGAGGTAGTGTAAGACTATGTTTGGAACATGGCATCGGTATT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * * * *
164196063 GTTATGAGAGCTAGTGTAAGACCAAGTCTGGGACACGGCATCGGCCTC
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
** ** * * **
164196111 AATATTTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGTACC
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
164196159 GATATATGAGAGCTAGTGTAAGACCATGT
1 G-T-TATGAGAGCTAGTGTAAGACCATGT
164196188 CGAGGACATG
Statistics
Matches: 314, Mismatches: 97, Indels: 2
0.76 0.23 0.00
Matches are distributed among these distances:
48 292 0.93
50 22 0.07
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (48 bp):
GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
Found at i:164195893 original size:96 final size:96
Alignment explanation
Indices: 164195729--164196203 Score: 664
Period size: 96 Copynumber: 4.9 Consensus size: 96
164195719 ATACTAGGGT
164195729 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
* *
164195794 GATCATGTTTGGGACATGGCATAGGCCTCAA
66 GACCATGTTTGGGACATGGCATCGGCCTCAA
* * *
164195825 TATGTGAGCCAGCGTAAGACCATGTTTGGAACATGGCATAGGCATTGTTACGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
* * * *
164195890 GATCACGTTTGGGATATGGTATCGGCCTCAA
66 GACCATGTTTGGGACATGGCATCGGCCTCAA
** * *
164195921 TATGTGAGCCAACGTAAGACCATGTTTGGAGCATGGCATCGACATTGTTATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
* * *
164195986 GACCATGTCTGGGACATGGCACCGGCCTTAA
66 GACCATGTTTGGGACATGGCATCGGCCTCAA
** * *
164196017 TATGTGAGGTAGTGTAAGACTATGTTTGGAACATGGCATCGGTATTGTTATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
* * *
164196082 GACCAAGTCTGGGACACGGCATCGGCCTCAA
66 GACCATGTTTGGGACATGGCATCGGCCTCAA
* * **
164196113 TATTTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGTACCGATATATGAGAGCTAGTGT
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG-T-TATGAGAGCTAGTGT
*
164196178 AAGACCATG-TCGAGGACATGGCATCG
64 AAGACCATGTTTG-GGACATGGCATCG
164196204 ACATCTTACC
Statistics
Matches: 335, Mismatches: 41, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
96 298 0.89
97 2 0.01
98 35 0.10
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
GACCATGTTTGGGACATGGCATCGGCCTCAA
Found at i:164199079 original size:37 final size:36
Alignment explanation
Indices: 164199026--164199115 Score: 144
Period size: 37 Copynumber: 2.4 Consensus size: 36
164199016 TATAAAAGAA
164199026 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATC-G
*
164199063 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCG
*
164199099 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
164199116 TTCCAAGTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
36 11 0.22
37 38 0.78
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.24
Consensus pattern (36 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCG
Found at i:164199266 original size:49 final size:49
Alignment explanation
Indices: 164199211--164199376 Score: 287
Period size: 49 Copynumber: 3.4 Consensus size: 49
164199201 TTTTACATTA
164199211 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
164199260 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * *
164199309 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
164199358 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
164199377 CATATATGTA
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 111 1.00
ACGTcount: A:0.29, C:0.33, G:0.10, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:164211753 original size:15 final size:15
Alignment explanation
Indices: 164211714--164211765 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
164211704 CAAGAAAACT
164211714 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
* *
164211729 -AGATAGAGAAACCCA
1 GA-ATAAAGAAATCCA
164211744 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
164211759 GAATAAA
1 GAATAAA
164211766 AACAAGGCTA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 1 0.03
15 29 0.94
16 1 0.03
ACGTcount: A:0.60, C:0.13, G:0.15, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:164214231 original size:27 final size:28
Alignment explanation
Indices: 164214174--164214243 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
164214164 AAATTTGTAC
**
164214174 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
164214202 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
164214229 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
164214244 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:164214252 original size:27 final size:27
Alignment explanation
Indices: 164214174--164214255 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
164214164 AAATTTGTAC
* *
164214174 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
164214202 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
164214229 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
164214256 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:164223454 original size:47 final size:47
Alignment explanation
Indices: 164223362--164223474 Score: 122
Period size: 47 Copynumber: 2.4 Consensus size: 47
164223352 GTGCGAATCG
* * * *
164223362 TATTGTAGAATTACCACGAACTATATTTACAGAAATGCTGGGAAATA
1 TATTGTAAAATTACCACAAACTATATGTACAGAAATGCTGCGAAATA
* * *
164223409 TATTGTAAAATTACTACAAACTGTATGTACAGAAATG-TCGCGAAATG
1 TATTGTAAAATTACCACAAACTATATGTACAGAAATGCT-GCGAAATA
* *
164223456 TATTATAAAA-TACCGCAAA
1 TATTGTAAAATTACCACAAA
164223475 TTGTATTGTA
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
46 8 0.15
47 47 0.85
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.29
Consensus pattern (47 bp):
TATTGTAAAATTACCACAAACTATATGTACAGAAATGCTGCGAAATA
Found at i:164223560 original size:54 final size:54
Alignment explanation
Indices: 164223501--164223858 Score: 323
Period size: 54 Copynumber: 6.7 Consensus size: 54
164223491 AAGATTATGT
* * * * * * *
164223501 AAATCTTGTATGTTGAAGGTCGTGATTGTAAATCAGCGGACCGTGAGATTTGTA
1 AAATCTTGTAAGTAGAAGGTCGTGATCGTAAATTAGCGAACTGTGAGATTCGTA
* * * *
164223555 AAATCTTGCAAGT---AGGTCATGATCATAAATTAGCGAATTGTGAGACTT-GTA
1 AAATCTTGTAAGTAGAAGGTCGTGATCGTAAATTAGCGAACTGTGAGA-TTCGTA
* * * * *
164223606 AAACCCTGTAAGTAGAAGGTCGTGATTGTAAATTAGAGGACTGTGAGATTCGTA
1 AAATCTTGTAAGTAGAAGGTCGTGATCGTAAATTAGCGAACTGTGAGATTCGTA
* * * * *
164223660 AAATCTCGTAAGTAGAAAGTCATGATCGTAAATTAGCAAACTGTGATATTCGTA
1 AAATCTTGTAAGTAGAAGGTCGTGATCGTAAATTAGCGAACTGTGAGATTCGTA
* * * * * * * *
164223714 AAATCCTGAAATTAGAAGGTTGTGATTGTAAATTAGCGGA-TCATGAGATTCATA
1 AAATCTTGTAAGTAGAAGGTCGTGATCGTAAATTAGCGAACT-GTGAGATTCGTA
** *
164223768 AAATCCAGTAAGTAGAAGGTCGTGATCGTAAATTAGCGAACTGTGAGATTCATA
1 AAATCTTGTAAGTAGAAGGTCGTGATCGTAAATTAGCGAACTGTGAGATTCGTA
* * **
164223822 AAATCTCGTAAGTAAAAGG-CTGTGAAGGTAAATTAGC
1 AAATCTTGTAAGTAGAAGGTC-GTGATCGTAAATTAGC
164223859 AGTGTAACAC
Statistics
Matches: 243, Mismatches: 53, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
51 38 0.16
52 2 0.01
53 4 0.02
54 198 0.81
55 1 0.00
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.29
Consensus pattern (54 bp):
AAATCTTGTAAGTAGAAGGTCGTGATCGTAAATTAGCGAACTGTGAGATTCGTA
Found at i:164223739 original size:108 final size:107
Alignment explanation
Indices: 164223515--164223826 Score: 382
Period size: 108 Copynumber: 2.9 Consensus size: 107
164223505 CTTGTATGTT
* * * * *
164223515 GAAGGTCGTGATTGTAAATCAGCGGACCGTGAGATTTGTAAAATCTTGCAAGTAG--GTCATGAT
1 GAAGGTCGTGATTGTAAATTAGCGGACTGTGAGATTCGTAAAATCTCGTAAGTAGAAGTCATGAT
* * * *
164223578 CATAAATTAGCGAATTGTGAGACTT-GTAAAACCCTGTAAGTA
66 CGTAAATTAGCGAACTGTGAGA-TTCGTAAAATCCTGAAAGTA
*
164223620 GAAGGTCGTGATTGTAAATTAGAGGACTGTGAGATTCGTAAAATCTCGTAAGTAGAAAGTCATGA
1 GAAGGTCGTGATTGTAAATTAGCGGACTGTGAGATTCGTAAAATCTCGTAAGTAG-AAGTCATGA
* * *
164223685 TCGTAAATTAGCAAACTGTGATATTCGTAAAATCCTGAAATTA
65 TCGTAAATTAGCGAACTGTGAGATTCGTAAAATCCTGAAAGTA
* * * *
164223728 GAAGGTTGTGATTGTAAATTAGCGGA-TCATGAGATTCATAAAATC-CAGTAAGTAGAAGGTCGT
1 GAAGGTCGTGATTGTAAATTAGCGGACT-GTGAGATTCGTAAAATCTC-GTAAGTAGAA-GTCAT
*
164223791 GATCGTAAATTAGCGAACTGTGAGATTCATAAAATC
63 GATCGTAAATTAGCGAACTGTGAGATTCGTAAAATC
164223827 TCGTAAGTAA
Statistics
Matches: 179, Mismatches: 21, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
105 49 0.27
107 6 0.03
108 124 0.69
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.29
Consensus pattern (107 bp):
GAAGGTCGTGATTGTAAATTAGCGGACTGTGAGATTCGTAAAATCTCGTAAGTAGAAGTCATGAT
CGTAAATTAGCGAACTGTGAGATTCGTAAAATCCTGAAAGTA
Found at i:164223846 original size:108 final size:107
Alignment explanation
Indices: 164223501--164223858 Score: 361
Period size: 108 Copynumber: 3.3 Consensus size: 107
164223491 AAGATTATGT
* * * * ** ** * *
164223501 AAATCTTGTATGTTGAAGGTCGTGATTGTAAATCAGCGGACCGTGAGATTTGTAAAATCTTGCAA
1 AAATCCTGTAAGTAGAAGGT-GTGATTGTAAATTAGCGGACTATGAGATTCATAAAATCTCGTAA
* *
164223566 GT---AGGTCATGATCATAAATTAGCGAATTGTGAGACTT-GTA
65 GTAGAAGGTCATGATCGTAAATTAGCGAACTGTGAGA-TTCGTA
* * * *
164223606 AAACCCTGTAAGTAGAAGGTCGTGATTGTAAATTAGAGGACTGTGAGATTCGTAAAATCTCGTAA
1 AAATCCTGTAAGTAGAAGGT-GTGATTGTAAATTAGCGGACTATGAGATTCATAAAATCTCGTAA
* * *
164223671 GTAGAAAGTCATGATCGTAAATTAGCAAACTGTGATATTCGTA
65 GTAGAAGGTCATGATCGTAAATTAGCGAACTGTGAGATTCGTA
* *
164223714 AAATCCTGAAATTAGAAGGTTGTGATTGTAAATTAGCGGA-TCATGAGATTCATAAAATC-CAGT
1 AAATCCTGTAAGTAGAAGG-TGTGATTGTAAATTAGCGGACT-ATGAGATTCATAAAATCTC-GT
* *
164223777 AAGTAGAAGGTCGTGATCGTAAATTAGCGAACTGTGAGATTCATA
63 AAGTAGAAGGTCATGATCGTAAATTAGCGAACTGTGAGATTCGTA
* **
164223822 AAAT-CTCGTAAGTAAAAGGCTGTGAAGGTAAATTAGC
1 AAATCCT-GTAAGTAGAAGG-TGTGATTGTAAATTAGC
164223859 AGTGTAACAC
Statistics
Matches: 213, Mismatches: 32, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
105 57 0.27
107 6 0.03
108 149 0.70
109 1 0.00
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.29
Consensus pattern (107 bp):
AAATCCTGTAAGTAGAAGGTGTGATTGTAAATTAGCGGACTATGAGATTCATAAAATCTCGTAAG
TAGAAGGTCATGATCGTAAATTAGCGAACTGTGAGATTCGTA
Found at i:164234696 original size:54 final size:54
Alignment explanation
Indices: 164234606--164234737 Score: 165
Period size: 54 Copynumber: 2.4 Consensus size: 54
164234596 TGTTACAAGC
* * * *
164234606 AGACTGTGAGATTCATAAAATCCCTAAAGTAAAAGGTCGTGATTATAAATCAGT
1 AGACTGTGAGATTCGTAAAATCCCAAAAATAAAAGGTCATGATTATAAATCAGT
* * * * *
164234660 GGACTGTGAGATTTGTAAAATCCCAAAAATAGAAGGTTATGATTGTAAATCAGT
1 AGACTGTGAGATTCGTAAAATCCCAAAAATAAAAGGTCATGATTATAAATCAGT
* *
164234714 AAACCGTGAGATTCGTAAAATCCC
1 AGACTGTGAGATTCGTAAAATCCC
164234738 GTAAGTAGAA
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (54 bp):
AGACTGTGAGATTCGTAAAATCCCAAAAATAAAAGGTCATGATTATAAATCAGT
Found at i:164234860 original size:13 final size:13
Alignment explanation
Indices: 164234842--164234870 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
164234832 GATTAAACTG
164234842 CTAGAGTATATAA
1 CTAGAGTATATAA
164234855 CTAGAGTATATAA
1 CTAGAGTATATAA
164234868 CTA
1 CTA
164234871 AATGGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.10, G:0.14, T:0.31
Consensus pattern (13 bp):
CTAGAGTATATAA
Found at i:164243198 original size:49 final size:49
Alignment explanation
Indices: 164243031--164243261 Score: 161
Period size: 50 Copynumber: 4.8 Consensus size: 49
164243021 ACATTGAGGC
* * *
164243031 GAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-TAAGATGT
1 GAGAGTCAGTGTAAGACCATGTCT-GGACATGGCATCGGC-ACGAATATGT
*
164243079 ----GTCAGTATAAGACCATGTCTAGGACATGGCATCGGCACGAATATGT
1 GAGAGTCAGTGTAAGACCATGTCT-GGACATGGCATCGGCACGAATATGT
* * *
164243125 GAGAG-CTAGTGTAAGACCATGTCTGGAACATGGCGTCGGCCTCG-AT-TTT
1 GAGAGTC-AGTGTAAGACCATGTCTGG-ACATGGCATCGG-CACGAATATGT
*
164243174 GATAGTCAGTGTAAGACCATGTCTGGGACATGGCAT---CA--AAT-TGAT
1 GAGAGTCAGTGTAAGACCATGTCT-GGACATGGCATCGGCACGAATATG-T
* *
164243219 GGATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCA
1 -GA-GAGTCAGTGTAAGACCATGTCT-GGACATGGCATCGGCA
164243262 TTATACCCTA
Statistics
Matches: 149, Mismatches: 15, Indels: 36
0.75 0.08 0.18
Matches are distributed among these distances:
44 13 0.09
45 16 0.11
46 16 0.11
47 32 0.21
49 34 0.23
50 35 0.23
51 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (49 bp):
GAGAGTCAGTGTAAGACCATGTCTGGACATGGCATCGGCACGAATATGT
Found at i:164243254 original size:96 final size:93
Alignment explanation
Indices: 164242992--164243256 Score: 267
Period size: 96 Copynumber: 2.8 Consensus size: 93
164242982 TGTGTGTGCT
* * *
164242992 AGTGTAAGA-CATGTCTGGGACAT-GTATCGACATTGAGGCGAGAGCCAGTGTAAGA-CATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-AAATTGATGCGAGAGCCAGTGTAAGACCATGTCT
*
164243054 GGGACAT-GCATCGGCTATAAGATGTGTC
65 GGGACATGGCATCGGCTATAAGATGAGTC
* * * *
164243082 AGTATAAGACCATGTCTAGGACATGGCATCGGCACGAA-T-ATGTGAGAGCTAGTGTAAGACCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT---CA--AATTGATGCGAGAGCCAGTGTAAGACCAT
* * **
164243145 GTCTGGAACATGGCGTCGGCCTCGATTTTGAT-AGTC
61 GTCTGGGACATGGCATCGG-CT--A-TAAGATGAGTC
164243181 AGTGTAAGACCATGTCTGGGACATGGCATCAAATTGATG-GATGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAAATTGATGCGA-GAGCCAGTGTAAGACCATGTCT
164243245 GGGACATGGCAT
65 GGGACATGGCAT
164243257 TGGCATTATA
Statistics
Matches: 142, Mismatches: 17, Indels: 26
0.77 0.09 0.14
Matches are distributed among these distances:
90 8 0.06
91 13 0.09
92 3 0.02
94 20 0.14
95 18 0.13
96 43 0.30
97 2 0.01
99 31 0.22
100 4 0.03
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (93 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAAATTGATGCGAGAGCCAGTGTAAGACCATGTCTG
GGACATGGCATCGGCTATAAGATGAGTC
Found at i:164246666 original size:39 final size:39
Alignment explanation
Indices: 164246612--164246777 Score: 179
Period size: 39 Copynumber: 3.9 Consensus size: 39
164246602 GAATGTTCGA
164246612 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
164246651 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGGCAATTGT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGC---G-AA-T-T
*
164246696 GCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 ----G---TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
* *
164246742 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
164246778 GGTTACCATA
Statistics
Matches: 110, Mismatches: 3, Indels: 27
0.79 0.02 0.19
Matches are distributed among these distances:
39 49 0.45
40 17 0.15
42 2 0.02
43 2 0.02
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 2 0.02
52 33 0.30
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
Found at i:164246691 original size:13 final size:13
Alignment explanation
Indices: 164246673--164246700 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
164246663 CTAAGCCCGA
164246673 AGGCAATTGTGCG
1 AGGCAATTGTGCG
164246686 AGGCAATTGTGCG
1 AGGCAATTGTGCG
164246699 AG
1 AG
164246701 TTATGATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.14, G:0.39, T:0.21
Consensus pattern (13 bp):
AGGCAATTGTGCG
Found at i:164246696 original size:52 final size:52
Alignment explanation
Indices: 164246634--164246739 Score: 194
Period size: 52 Copynumber: 2.0 Consensus size: 52
164246624 CTAAGCCCGA
*
164246634 AGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCG
1 AGGCAATTGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCG
*
164246686 AGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCG
1 AGGCAATTGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCG
164246738 AG
1 AG
164246740 TTGTGATATC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.23
Consensus pattern (52 bp):
AGGCAATTGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCG
Found at i:164246775 original size:40 final size:40
Alignment explanation
Indices: 164246686--164246808 Score: 167
Period size: 40 Copynumber: 3.1 Consensus size: 40
164246676 CAATTGTGCG
164246686 AGGCAATTGTGCGAGTTATGATATCCGGGCTAAG-CCCGA
1 AGGCAATTGTGCGAGTTATGATATCCGGGCTAAGTCCCGA
* *
164246725 AGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGA
1 AGGCAATTGTGCGAGTTATGATATCCGGGCTAAGTCCCGA
* * ** * *
164246765 AGGCATTTGTGCGGGTTACCATAACCGGGCTATGTCCCGA
1 AGGCAATTGTGCGAGTTATGATATCCGGGCTAAGTCCCGA
164246805 AGGC
1 AGGC
164246809 GTTTGAACGA
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 32 0.44
40 41 0.56
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (40 bp):
AGGCAATTGTGCGAGTTATGATATCCGGGCTAAGTCCCGA
Found at i:164254692 original size:39 final size:39
Alignment explanation
Indices: 164254638--164254798 Score: 187
Period size: 39 Copynumber: 3.9 Consensus size: 39
164254628 GAATGTTCGA
*
164254638 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTT
164254677 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGC-A--------AGTT
* *
164254725 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTT
* *
164254764 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGC
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGC
164254799 GGGTTACCAT
Statistics
Matches: 106, Mismatches: 6, Indels: 19
0.81 0.05 0.15
Matches are distributed among these distances:
39 53 0.50
40 17 0.16
48 36 0.34
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTT
Found at i:164254743 original size:87 final size:88
Alignment explanation
Indices: 164254639--164254799 Score: 279
Period size: 87 Copynumber: 1.8 Consensus size: 88
164254629 AATGTTCGAG
164254639 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
164254703 AATTGTGCGAGTTGTGCGAGTTA
66 AATTGTGCGAGTTGTGCGAGTTA
* * *
164254726 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
*
164254791 ATTTGTGCG
66 AATTGTGCG
164254800 GGTTACCATA
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
87 52 0.75
88 17 0.25
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.25
Consensus pattern (88 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTGTGCGAGTTA
Found at i:164254797 original size:40 final size:40
Alignment explanation
Indices: 164254714--164254835 Score: 156
Period size: 40 Copynumber: 3.1 Consensus size: 40
164254704 ATTGTGCGAG
*
164254714 TTGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAA
1 TTGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAT
* *
164254753 TTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCAT
1 TTGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAT
* ** * * *
164254793 TTGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGCGT
1 TTGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAT
164254833 TTG
1 TTG
164254836 AACGAGTAGC
Statistics
Matches: 71, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 26 0.37
40 45 0.63
ACGTcount: A:0.20, C:0.20, G:0.32, T:0.27
Consensus pattern (40 bp):
TTGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAT
Found at i:164259190 original size:21 final size:21
Alignment explanation
Indices: 164259149--164259190 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
164259139 TAAACTACAA
**
164259149 AAATATAACAAAAAATTTAAT
1 AAATATAACAAAAAAAATAAT
164259170 AAAT-TAACAATAAAAAATAAT
1 AAATATAACAA-AAAAAATAAT
164259191 TAAACCATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (21 bp):
AAATATAACAAAAAAAATAAT
Found at i:164259271 original size:20 final size:21
Alignment explanation
Indices: 164259245--164259284 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
164259235 TGCCAAAATT
164259245 TTTTTTTAAAGAAACTTAAAA
1 TTTTTTTAAAGAAACTTAAAA
*
164259266 TTTTTTTGAAGAAACTTAA
1 TTTTTTTAAAGAAACTTAA
164259285 CTGATGGGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.45
Consensus pattern (21 bp):
TTTTTTTAAAGAAACTTAAAA
Found at i:164262472 original size:28 final size:29
Alignment explanation
Indices: 164262373--164262533 Score: 150
Period size: 29 Copynumber: 5.6 Consensus size: 29
164262363 GTGTCGAGAT
*
164262373 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
164262402 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
*
164262431 TGGCACTAAGTGTGCAAGCTGGAAA-ATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* ** ***
164262459 CGGCACTGGGTGTGCGAGCTCGG-AGGGTA
1 TGGCACTAAGTGTGCGAGCT-GGAAATATA
** *
164262488 TGGCACTGTGTGTGCGAGCT-TAAAT-TA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
164262515 CGTGGCACTAAGTGTGCGA
1 --TGGCACTAAGTGTGCGA
164262534 AATCGAGTAG
Statistics
Matches: 110, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
27 2 0.02
28 20 0.18
29 88 0.80
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:164268982 original size:40 final size:40
Alignment explanation
Indices: 164268927--164269039 Score: 156
Period size: 40 Copynumber: 2.8 Consensus size: 40
164268917 TGAATGATAC
* *
164268927 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
**
164268967 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* *
164269007 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTT
164269040 ACCAAATCGA
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 64 0.97
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:164277275 original size:40 final size:40
Alignment explanation
Indices: 164277220--164277467 Score: 277
Period size: 40 Copynumber: 6.2 Consensus size: 40
164277210 TGAATGATAC
* * *
164277220 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* *
164277260 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGATTATAT
* ** *
164277300 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* *
164277340 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGATTATAT
* ** *
164277380 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* * ** *
164277420 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
164277460 CC-GGCTAA
1 CCGGGCTAA
164277468 ATTCCGAAGA
Statistics
Matches: 172, Mismatches: 32, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
39 7 0.04
40 162 0.94
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
Found at i:164277353 original size:80 final size:80
Alignment explanation
Indices: 164277220--164277467 Score: 374
Period size: 80 Copynumber: 3.1 Consensus size: 80
164277210 TGAATGATAC
* * * * ** *
164277220 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCATTCG
164277285 TGCGAGTTGTTATAT
66 TGCGAGTTGTTATAT
164277300 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCATTCG
164277365 TGCGAGTTGTTATAT
66 TGCGAGTTGTTATAT
*
164277380 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGC-ATTC
** *
164277444 GTGCTTGTGGTTATAT
65 GTGCGAGTTGTTATAT
164277460 CC-GGCTAA
1 CCGGGCTAA
164277468 ATTCCGAAGA
Statistics
Matches: 156, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
79 6 0.04
80 147 0.94
81 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTTGTTATAT
Found at i:164277433 original size:120 final size:120
Alignment explanation
Indices: 164277220--164277447 Score: 332
Period size: 120 Copynumber: 1.9 Consensus size: 120
164277210 TGAATGATAC
* * *
164277220 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
* *** * *
164277285 TGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
66 TGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
* *
164277340 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTC
*
164277404 GTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATTGTGC
65 GTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCAATTGTGC
164277448 TTGTGGTTAT
Statistics
Matches: 95, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
120 93 0.98
121 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (120 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
Found at i:164282407 original size:2 final size:2
Alignment explanation
Indices: 164282400--164282426 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
164282390 AGGTTTTGTT
164282400 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
164282427 CTGGATATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:164283550 original size:27 final size:27
Alignment explanation
Indices: 164283518--164283623 Score: 117
Period size: 27 Copynumber: 3.9 Consensus size: 27
164283508 CAGAAAATGA
*
164283518 AAGCCTTTGTGGCAATCTATGAAATTG
1 AAGCCTTTGTGGCAATCTATGAAATAG
**
164283545 AAGCCTTTGTGGTGTATCTA--AAATAG
1 AAGCCTTTGTGG-CAATCTATGAAATAG
* * *
164283571 AAGCTTTTGTGGAAATCTATGAAATGG
1 AAGCCTTTGTGGCAATCTATGAAATAG
*
164283598 AAGCCTTTGAGGCAATCTATAGAAAT
1 AAGCCTTTGTGGCAATCTAT-GAAAT
164283624 GAATGTCTTT
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
25 5 0.08
26 16 0.25
27 34 0.52
28 10 0.15
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.32
Consensus pattern (27 bp):
AAGCCTTTGTGGCAATCTATGAAATAG
Found at i:164283783 original size:27 final size:27
Alignment explanation
Indices: 164283753--164283835 Score: 139
Period size: 27 Copynumber: 3.1 Consensus size: 27
164283743 ATGTGTGGCT
164283753 AACTCTGAAGGAATAGTACATATGGTG
1 AACTCTGAAGGAATAGTACATATGGTG
*
164283780 AACTCTGAAGGAATAGTACATATGATG
1 AACTCTGAAGGAATAGTACATATGGTG
**
164283807 AACTCTGAAGGAATAGTATGTATGGTG
1 AACTCTGAAGGAATAGTACATATGGTG
164283834 AA
1 AA
164283836 TATTAAGAGA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.39, C:0.10, G:0.25, T:0.27
Consensus pattern (27 bp):
AACTCTGAAGGAATAGTACATATGGTG
Found at i:164284831 original size:47 final size:47
Alignment explanation
Indices: 164284762--164284855 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
164284752 TACTTGGTTC
*
164284762 AATCGGCTAAATAATATGTATCATTATACATATTCACAATTTACACT
1 AATCGGCTAAATAATATGTATCATTATACACATTCACAATTTACACT
164284809 AATCGGCTAAATAATATGTATCATTATACACATTCACAATTTACACT
1 AATCGGCTAAATAATATGTATCATTATACACATTCACAATTTACACT
164284856 TAATTAGCAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.40, C:0.18, G:0.06, T:0.35
Consensus pattern (47 bp):
AATCGGCTAAATAATATGTATCATTATACACATTCACAATTTACACT
Found at i:164287606 original size:28 final size:27
Alignment explanation
Indices: 164287543--164287612 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
164287533 ATAGTGAGTC
164287543 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
164287570 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
164287598 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
164287613 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:164289586 original size:46 final size:48
Alignment explanation
Indices: 164289468--164289597 Score: 155
Period size: 46 Copynumber: 2.8 Consensus size: 48
164289458 TGTAACCCGC
*
164289468 CCATAAGTGAACTCGGACGCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * *
164289518 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A-TTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT-ACAT
164289561 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
164289598 TGCTCAACCA
Statistics
Matches: 70, Mismatches: 6, Indels: 12
0.80 0.07 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 29 0.41
47 28 0.40
48 2 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (48 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Found at i:164289616 original size:46 final size:44
Alignment explanation
Indices: 164289473--164289616 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
164289463 CCCGCCCATA
*
164289473 AGTGAACTCGGACGCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
164289520 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
164289566 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
164289612 AGTGA
1 AGTGA
164289617 CATGTCACTT
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.42
47 30 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:164297007 original size:27 final size:28
Alignment explanation
Indices: 164296976--164297045 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
164296966 TATATGAGTC
164296976 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
164297003 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
164297031 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
164297046 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:164301510 original size:112 final size:112
Alignment explanation
Indices: 164301383--164301602 Score: 334
Period size: 112 Copynumber: 2.0 Consensus size: 112
164301373 CAAAATATTA
**
164301383 ATTGTATATATTTTACTGAATTTATTAATATAAACAATTATTTTAATTAATTTCGGTAAAAATAT
1 ATTGTATATATTTTACCCAATTTATTAATATAAACAATTATTTTAATTAATTTCGGTAAAAATAT
*
164301448 AAAAGACATGGAACA-TAATATTCTTTTGGAAAGAATATAATTAATTG
66 AAAAGACATGGAA-ATTAATATTATTTTGGAAAGAATATAATTAATTG
* * ** *
164301495 ATTGTATATATTTTACCCAATTTATTAATATAGACAGTTATTTTAATTAATTTTTGTCAAAATAT
1 ATTGTATATATTTTACCCAATTTATTAATATAAACAATTATTTTAATTAATTTCGGTAAAAATAT
* *
164301560 AAAAGATATTGAAATTAATATTATTTTGGAAAGAATATAATTA
66 AAAAGACATGGAAATTAATATTATTTTGGAAAGAATATAATTA
164301603 GTATATGAAT
Statistics
Matches: 97, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
111 1 0.01
112 96 0.99
ACGTcount: A:0.43, C:0.05, G:0.09, T:0.43
Consensus pattern (112 bp):
ATTGTATATATTTTACCCAATTTATTAATATAAACAATTATTTTAATTAATTTCGGTAAAAATAT
AAAAGACATGGAAATTAATATTATTTTGGAAAGAATATAATTAATTG
Found at i:164301852 original size:79 final size:79
Alignment explanation
Indices: 164301718--164301866 Score: 219
Period size: 79 Copynumber: 1.9 Consensus size: 79
164301708 GAAATTAATA
* *
164301718 TTCTTTTAGAAAGAATATAATCCTTTTTTCTAACTTTTCATTTGCCTTCTTTATTAATAAGAGAA
1 TTCTTTTAGAAAGAATATAATCCTTTTTTCTAACTTTCCATTTGCCTTCTCTATTAATAAGAGAA
164301783 TAATCATTTATTCT
66 TAATCATTTATTCT
* * * * *
164301797 TTCTTTTGGAAAGAATATAATTGC-TTTTTCTACCTTTCCATTTGCTTTCTCTATTAATAAGGGA
1 TTCTTTTAGAAAGAATATAA-TCCTTTTTTCTAACTTTCCATTTGCCTTCTCTATTAATAAGAGA
164301861 ATAATC
65 ATAATC
164301867 CAAGCTTTCC
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
79 60 0.97
80 2 0.03
ACGTcount: A:0.29, C:0.15, G:0.09, T:0.48
Consensus pattern (79 bp):
TTCTTTTAGAAAGAATATAATCCTTTTTTCTAACTTTCCATTTGCCTTCTCTATTAATAAGAGAA
TAATCATTTATTCT
Found at i:164305931 original size:40 final size:40
Alignment explanation
Indices: 164305886--164306052 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
164305876 CGGAATATAA
164305886 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
164305926 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
164305966 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
164306006 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
164306045 CCGGATAT
1 CCGGATAT
164306053 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:164306036 original size:80 final size:79
Alignment explanation
Indices: 164305886--164306052 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
164305876 CGGAATATAA
* *
164305886 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
164305951 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
164305966 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
164306028 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
164306045 CCGGATAT
1 CCGGATAT
164306053 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:164306900 original size:17 final size:19
Alignment explanation
Indices: 164306877--164306922 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
164306867 AAGAAGCATG
164306877 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
164306895 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
164306913 AATCATGCTC
1 AATCATGCTC
164306923 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:164311973 original size:58 final size:58
Alignment explanation
Indices: 164311901--164312030 Score: 156
Period size: 58 Copynumber: 2.2 Consensus size: 58
164311891 TTTAAGCCCA
* * * * *
164311901 CACACATAGTGCCATA-CCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTTCCAGCATG
1 CACACTTAGTGCCATATACTTCCAGCAT-GCACACCCAGTGCCATA-TATTTCCAGCATG
* **
164311959 CACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATG
1 CACACTTAGTGCCATATACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCATG
164312017 CACACTTAGTGCCA
1 CACACTTAGTGCCA
164312031 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
58 41 0.66
59 20 0.32
60 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (58 bp):
CACACTTAGTGCCATATACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCATG
Found at i:164311988 original size:29 final size:29
Alignment explanation
Indices: 164311948--164312030 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
164311938 TGCCGTATTT
164311948 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
164311977 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
164312006 TTTCCAGCATGCACACTTAGTGCCA
1 TTTCCAGCATGCACACTTAGTGCCA
164312031 ATCTCGTCAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:164313216 original size:20 final size:19
Alignment explanation
Indices: 164313187--164313226 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
164313177 TTTTTTTCTT
164313187 TCTTTGTTTTCTTCATATTC
1 TCTTTGTTTTCTTCAT-TTC
* *
164313207 TCTTTTTTTTTTTCATTTC
1 TCTTTGTTTTCTTCATTTC
164313226 T
1 T
164313227 TTATTCTTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.07, C:0.17, G:0.03, T:0.72
Consensus pattern (19 bp):
TCTTTGTTTTCTTCATTTC
Found at i:164315918 original size:62 final size:65
Alignment explanation
Indices: 164315847--164315976 Score: 203
Period size: 68 Copynumber: 2.0 Consensus size: 65
164315837 ACATAATCTA
164315847 AATCATAACACAATTATCAATGAAAACCC-A-A-ATATAATCTACTTTCAAAAACATACAAAATT
1 AATCATAACACAATTATCAATGAAAACCCAACATATATAATCTACTTTCAAAAACATACAAAATT
*
164315909 AATCATAACACAATTATCAATGAAAACCCAAAGTCATATATAATCTACTTTCAAATACATACAAA
1 AATCATAACACAATTATCAATGAAAACCC-AA--CATATATAATCTACTTTCAAAAACATACAAA
164315974 ATT
63 ATT
164315977 CATGTATTAT
Statistics
Matches: 61, Mismatches: 1, Indels: 6
0.90 0.01 0.09
Matches are distributed among these distances:
62 29 0.48
64 1 0.02
67 1 0.02
68 30 0.49
ACGTcount: A:0.52, C:0.19, G:0.02, T:0.27
Consensus pattern (65 bp):
AATCATAACACAATTATCAATGAAAACCCAACATATATAATCTACTTTCAAAAACATACAAAATT
Found at i:164316682 original size:14 final size:14
Alignment explanation
Indices: 164316665--164316693 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
164316655 AAGCAATAAT
164316665 ATATTCATAATATA
1 ATATTCATAATATA
164316679 ATATTCATAATATA
1 ATATTCATAATATA
164316693 A
1 A
164316694 CTTATATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
ATATTCATAATATA
Found at i:164321902 original size:40 final size:40
Alignment explanation
Indices: 164321836--164322002 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
164321826 AAATTGAATG
* * *
164321836 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
164321875 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
164321915 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
164321955 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
164321995 ATATCCGG
1 ATATCCGG
164322003 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:164329912 original size:40 final size:40
Alignment explanation
Indices: 164329846--164330012 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
164329836 AAATTGAATG
* * *
164329846 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
164329885 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
164329925 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
164329965 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
164330005 ATATCCGG
1 ATATCCGG
164330013 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:164332624 original size:28 final size:27
Alignment explanation
Indices: 164332572--164332684 Score: 136
Period size: 28 Copynumber: 4.1 Consensus size: 27
164332562 ATAGCTGCCA
* *
164332572 AAACAGATATTGTGACAGAGTCACCAG
1 AAACAGATATTGTGGCAGAGCCACCAG
* *
164332599 ATACAGATAATTGTGGCAGGGCCACCAG
1 AAACAGAT-ATTGTGGCAGAGCCACCAG
*
164332627 AAATAGATATCTGTGGCAGAGCCACCAG
1 AAACAGATAT-TGTGGCAGAGCCACCAG
* *
164332655 AAACAAATATTTGTGGTAGAGCCACCAG
1 AAACAGATA-TTGTGGCAGAGCCACCAG
164332683 AA
1 AA
164332685 CGAATCCTCC
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 9 0.12
28 63 0.86
29 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (27 bp):
AAACAGATATTGTGGCAGAGCCACCAG
Found at i:164333962 original size:18 final size:18
Alignment explanation
Indices: 164333915--164333971 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
164333905 GGCTATAGAG
164333915 GAAAAGAAGAAGAG-GAA
1 GAAAAGAAGAAGAGAGAA
* * *
164333932 AAAATAGATGAAGAGAGGA
1 GAAA-AGAAGAAGAGAGAA
*
164333951 GAAAAGAAGAAGAGAAAA
1 GAAAAGAAGAAGAGAGAA
164333969 GAA
1 GAA
164333972 TTGTCAGAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
17 3 0.10
18 23 0.74
19 5 0.16
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.04
Consensus pattern (18 bp):
GAAAAGAAGAAGAGAGAA
Found at i:164336117 original size:38 final size:38
Alignment explanation
Indices: 164336050--164336163 Score: 140
Period size: 38 Copynumber: 3.0 Consensus size: 38
164336040 TATAGATTTA
* * * *
164336050 GGGTTCTTGTTGTCCTGAAACCTAAGTCAGTTAACCTT
1 GGGTTTTTGTTGTCCTCAAACCTAGGTCAGCTAACCTT
* * * *
164336088 -TGTTATTTGTCGTCCTCAAACTTAGGTCAGCTGACCTT
1 GGGTT-TTTGTTGTCCTCAAACCTAGGTCAGCTAACCTT
164336126 GGGTTTTTGTTGTCCTCAAACCTAGGTCAGCTAACCTT
1 GGGTTTTTGTTGTCCTCAAACCTAGGTCAGCTAACCTT
164336164 CTCCTATTTT
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
37 3 0.05
38 56 0.90
39 3 0.05
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (38 bp):
GGGTTTTTGTTGTCCTCAAACCTAGGTCAGCTAACCTT
Found at i:164338117 original size:42 final size:43
Alignment explanation
Indices: 164338034--164338186 Score: 111
Period size: 43 Copynumber: 3.6 Consensus size: 43
164338024 TCCTAGATGT
* *
164338034 GGTCTTACATGTAATCAAATATCGATGCCACTATCCTAGACAG
1 GGTCTTACATGAAATCAAATATCGATGCCACTATCCCAGACAG
* * *
164338077 GGTCTTACTTGAAATCAAATA-CGATGCCGA-TGTCCCAGACAT
1 GGTCTTACATGAAATCAAATATCGATGCC-ACTATCCCAGACAG
* * * *
164338119 CGTTTTACATGTAAATCTTAAAT-T-GATGCCAAC-ATCTCAGA-TG
1 GGTCTTACATG-AAATC--AAATATCGATGCC-ACTATCCCAGACAG
* *
164338162 TGGTCTTACACGAAATCACATATCG
1 -GGTCTTACATGAAATCAAATATCG
164338187 GAATCCTATG
Statistics
Matches: 84, Mismatches: 17, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
41 3 0.04
42 25 0.30
43 31 0.37
44 21 0.25
45 4 0.05
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGAAATCAAATATCGATGCCACTATCCCAGACAG
Found at i:164338135 original size:43 final size:44
Alignment explanation
Indices: 164338035--164338135 Score: 111
Period size: 42 Copynumber: 2.4 Consensus size: 44
164338025 CCTAGATGTG
* *
164338035 GTCTTACATGT-AATCAAATATCGATGCCACTATCCTAGACAGG
1 GTCTTACATGTAAATCAAATATCGATGCCACTATCCCAGACAGC
* * *
164338078 GTCTTACTTG-AAATCAAATA-CGATGCCGA-TGTCCCAGACATC
1 GTCTTACATGTAAATCAAATATCGATGCC-ACTATCCCAGACAGC
*
164338120 GTTTTACATGTAAATC
1 GTCTTACATGTAAATC
164338136 TTAAATTGAT
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
42 24 0.50
43 24 0.50
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.30
Consensus pattern (44 bp):
GTCTTACATGTAAATCAAATATCGATGCCACTATCCCAGACAGC
Found at i:164339083 original size:12 final size:12
Alignment explanation
Indices: 164339048--164339076 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
164339038 TTATTTTAAT
164339048 TCATTTAATACA
1 TCATTTAATACA
164339060 TCATTTAATACA
1 TCATTTAATACA
164339072 TCATT
1 TCATT
164339077 CTATACAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.38, C:0.17, G:0.00, T:0.45
Consensus pattern (12 bp):
TCATTTAATACA
Found at i:164344991 original size:77 final size:78
Alignment explanation
Indices: 164344826--164345000 Score: 214
Period size: 77 Copynumber: 2.2 Consensus size: 78
164344816 GCTACTCGTT
* *
164344826 CAAATGCCTTCGGGACATAGCCC-GGTTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTA-CCCTGATT-TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
* *
164344890 ATTTAGTAACTCGCA
64 ATATAGTAACTAGCA
* **
164344905 TAAATGCCTTC-GGACTTACCCTGATTTAGTAACTCGCAC-AATGCCTTCGGATCTTAGTCCGGA
1 CAAATGCCTTCGGGACTTACCCTGATTTAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCGGA
*
164344968 TATAGTCACTTAGCA
65 TATAGTAAC-TAGCA
164344983 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
164345001 GCCCGGACAT
Statistics
Matches: 83, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
76 12 0.14
77 38 0.46
78 23 0.28
79 10 0.12
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTACCCTGATTTAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAT
ATAGTAACTAGCA
Found at i:164345007 original size:40 final size:39
Alignment explanation
Indices: 164344807--164345007 Score: 221
Period size: 39 Copynumber: 5.1 Consensus size: 39
164344797 CGGAGTTTAA
** *
164344807 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTC-GGACTTAGC
* *
164344847 CCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
* *
164344886 CCGGATTTAGTAACTCGCATAAATGCCTTCGGACTTA-C
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
* * *
164344924 CCTGATTTAGTAACTCGCAC-AATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGA-CTTAGC
* *
164344963 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTC-GGACTTAGC
164345003 CCGGA
1 CCGGA
164345008 CATCATTCGA
Statistics
Matches: 139, Mismatches: 16, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
37 12 0.09
38 23 0.17
39 53 0.38
40 46 0.33
41 5 0.04
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
Found at i:164352958 original size:40 final size:40
Alignment explanation
Indices: 164352921--164353106 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
164352911 GCTACTCGTT
*
164352921 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
164352961 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
164353001 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
164353041 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
164353082 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
164353107 CATCATTCGA
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 3 0.02
40 118 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:164372424 original size:31 final size:31
Alignment explanation
Indices: 164372386--164372461 Score: 125
Period size: 31 Copynumber: 2.5 Consensus size: 31
164372376 AACGGTTACT
164372386 GGGCCGAAGCCTTTTCATAAATCAAATCACC
1 GGGCCGAAGCCTTTTCATAAATCAAATCACC
* *
164372417 GGGCCGAAGCCTTTTCATAAATCATATCACT
1 GGGCCGAAGCCTTTTCATAAATCAAATCACC
*
164372448 GGGCCGATGCCTTT
1 GGGCCGAAGCCTTT
164372462 ATTGTAAACG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (31 bp):
GGGCCGAAGCCTTTTCATAAATCAAATCACC
Found at i:164372545 original size:42 final size:42
Alignment explanation
Indices: 164372485--164372576 Score: 159
Period size: 42 Copynumber: 2.2 Consensus size: 42
164372475 TGGCCCATAG
164372485 GCCCATTTCAATAACACATGAAATA-TCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACT-AATGAATGTATGCAA
*
164372527 GCCCATTTCAATATCACATGAAATACTAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACTAATGAATGTATGCAA
164372569 GCCCATTT
1 GCCCATTT
164372577 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
42 47 0.98
43 1 0.02
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACTAATGAATGTATGCAA
Found at i:164372784 original size:26 final size:26
Alignment explanation
Indices: 164372720--164372893 Score: 228
Period size: 26 Copynumber: 6.8 Consensus size: 26
164372710 CCTCTTTAAT
* ***
164372720 AACTGGGGCA-AAGCCCTTTTTGGTA
1 AACTAGGGCATAAGCCCTTTTCAATA
*
164372745 AACTAGGGCA-AAGCCCTTTTTAATA
1 AACTAGGGCATAAGCCCTTTTCAATA
* **
164372770 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTAGGGCATAAGCCCTTTTCAATA
**
164372796 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTAGGGCATAAGCCCTTTTCAATA
164372822 AACTAGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCAATA
164372848 AACTAGGG-ATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCAATA
*
164372873 AACTGGGGCATAAGCCCTTTT
1 AACTAGGGCATAAGCCCTTTT
164372894 GCACTTCCTT
Statistics
Matches: 136, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
25 55 0.40
26 81 0.60
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (26 bp):
AACTAGGGCATAAGCCCTTTTCAATA
Found at i:164372790 original size:51 final size:52
Alignment explanation
Indices: 164372720--164372893 Score: 264
Period size: 51 Copynumber: 3.4 Consensus size: 52
164372710 CCTCTTTAAT
* *
164372720 AACTGGGGCA-AAGCCCTTTTTGGTAAACTAGGGCA-AAGCCCTTTTTAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATA
**
164372770 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATA
* **
164372822 AACTAGGGCATAAGCCCTTTTCAATAAACTAGGG-ATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATA
164372873 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
164372894 GCACTTCCTT
Statistics
Matches: 112, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
50 10 0.09
51 59 0.53
52 43 0.38
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATA
Found at i:164372968 original size:20 final size:20
Alignment explanation
Indices: 164372943--164372997 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
164372933 TTATGAATTC
*
164372943 ATCATGTGCATTTCATA-CA
1 ATCATGTGCATATCATATCA
164372962 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
164372983 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
164372998 CCCCACGTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
18 8 0.24
20 23 0.70
21 2 0.06
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:164373053 original size:25 final size:25
Alignment explanation
Indices: 164373025--164373075 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
164373015 ATAATTAAAC
* * *
164373025 CCTAGGGGTATAATGGTCATTTTCA
1 CCTAGGGGCAAAATAGTCATTTTCA
164373050 CCTAGGGGCAAAATAGTCATTTTCA
1 CCTAGGGGCAAAATAGTCATTTTCA
164373075 C
1 C
164373076 ATTATAAGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTCA
Found at i:164373863 original size:31 final size:31
Alignment explanation
Indices: 164373825--164373888 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
164373815 CTTTTTCATA
164373825 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
164373856 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
164373887 TT
1 TT
164373889 ACTATAAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:164374133 original size:24 final size:24
Alignment explanation
Indices: 164374082--164374223 Score: 193
Period size: 23 Copynumber: 6.0 Consensus size: 24
164374072 GCTTTATCAT
*
164374082 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
164374107 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
164374131 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
164374154 ATAACGGGGGCATAA-CCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
164374177 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
164374200 ATAACTAGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
164374224 CACTTCCTCC
Statistics
Matches: 107, Mismatches: 6, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
22 3 0.03
23 58 0.54
24 34 0.32
25 12 0.11
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:164374297 original size:20 final size:20
Alignment explanation
Indices: 164374272--164374338 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
164374262 TTATGATTAC
164374272 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
164374292 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
164374312 GTCATGTGCATATCATATAT
1 ATCATGTGCATATCATACAT
*
164374332 ACCATGT
1 ATCATGT
164374339 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:164374303 original size:11 final size:11
Alignment explanation
Indices: 164374272--164374327 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
164374262 TTATGATTAC
164374272 ATCATGTGCAT
1 ATCATGTGCAT
*
164374283 ATCA--TACAT
1 ATCATGTGCAT
164374292 ATCATGTGCAT
1 ATCATGTGCAT
*
164374303 ATCA--TACAT
1 ATCATGTGCAT
*
164374312 GTCATGTGCAT
1 ATCATGTGCAT
164374323 ATCAT
1 ATCAT
164374328 ATATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:164374416 original size:24 final size:24
Alignment explanation
Indices: 164374375--164374421 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
164374365 ATACATAAAC
* * *
164374375 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAACGGTCATTTTA
164374399 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
164374422 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:164379705 original size:103 final size:101
Alignment explanation
Indices: 164379558--164379747 Score: 283
Period size: 103 Copynumber: 1.9 Consensus size: 101
164379548 ATATGTATGA
* * *
164379558 GGCATCGATATGTGATTCTAACATGTGATGTAGGAGTAAGACCATGGCATCGATATGTGATTCCA
1 GGCATCGATATGTGATTCAAACATGTGACGTAGGAGTAAAACCATGGCATCGATATGTGATTCCA
*
164379623 ATATATGTGTGCGAGTAAGACCACATTTAATACGTT
66 ATATATGTGTGAGAGTAAGACCACATTTAATACGTT
*
164379659 GGCATCGATATGTGATTTCAATATATGTGACGT-GTGAGTAAAACCATGGCATCGATATGTGATT
1 GGCATCGATATGTGA-TTCAA-ACATGTGACGTAG-GAGTAAAACCATGGCATCGATATGTGATT
**
164379723 CTGATATATGTGTGAGAGTAAGACC
63 CCAATATATGTGTGAGAGTAAGACC
164379748 CTGTCTGGGA
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
101 15 0.19
102 5 0.06
103 59 0.75
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.31
Consensus pattern (101 bp):
GGCATCGATATGTGATTCAAACATGTGACGTAGGAGTAAAACCATGGCATCGATATGTGATTCCA
ATATATGTGTGAGAGTAAGACCACATTTAATACGTT
Found at i:164379765 original size:103 final size:102
Alignment explanation
Indices: 164379558--164379778 Score: 261
Period size: 103 Copynumber: 2.2 Consensus size: 102
164379548 ATATGTATGA
* * *
164379558 GGCATCGATATGTGA-TTCTAACATGTGATGTAGGAGTAAGACCATGGCATCGATATGTGATTCC
1 GGCATCGATATGTGATTTCAAACATGTGACGTAGGAGTAAAACCATGGCATCGATATGTGATTCC
* * **
164379622 AATATATGTGTGCGAGTAAGACCACATTTAATACGTT
66 AATATATGTGTGAGAGTAAGACCACATTTAAGACAAT
*
164379659 GGCATCGATATGTGATTTCAATATATGTGACGT-GTGAGTAAAACCATGGCATCGATATGTGATT
1 GGCATCGATATGTGATTTCAA-ACATGTGACGTAG-GAGTAAAACCATGGCATCGATATGTGATT
** **
164379723 CTGATATATGTGTGAGAGTAAGACC-C-TGTCTGGGACAAT
64 CCAATATATGTGTGAGAGTAAGACCACAT-T-TAAGACAAT
*
164379762 GGCATCAATATGTGATT
1 GGCATCGATATGTGATT
164379779 ACATATAAGA
Statistics
Matches: 102, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
101 16 0.16
102 7 0.07
103 79 0.77
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (102 bp):
GGCATCGATATGTGATTTCAAACATGTGACGTAGGAGTAAAACCATGGCATCGATATGTGATTCC
AATATATGTGTGAGAGTAAGACCACATTTAAGACAAT
Found at i:164392082 original size:30 final size:29
Alignment explanation
Indices: 164391988--164392089 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
164391978 TATAGTGAAT
* * *
164391988 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
164392017 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
164392045 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
164392075 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
164392090 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:164402954 original size:28 final size:28
Alignment explanation
Indices: 164402889--164402987 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
164402879 CATGAGATTG
* * *
164402889 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
164402918 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
164402946 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
164402974 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
164402988 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:164411867 original size:40 final size:41
Alignment explanation
Indices: 164411801--164411984 Score: 218
Period size: 40 Copynumber: 4.6 Consensus size: 41
164411791 AAATTGAATG
* * **
164411801 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTCGTGC-GAGTCATT
* * ***
164411840 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCATT
164411880 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCATT
*
164411920 CTATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCATT
*
164411960 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
164411985 TTTGTGCACA
Statistics
Matches: 127, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 16 0.13
40 111 0.87
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCATT
Found at i:164411985 original size:40 final size:40
Alignment explanation
Indices: 164411841--164411991 Score: 223
Period size: 40 Copynumber: 3.8 Consensus size: 40
164411831 CTGGAAATTA
* * *** *
164411841 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
164411881 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
164411921 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
*
164411961 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGC
164411992 ACATGCTTAT
Statistics
Matches: 103, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
39 3 0.03
40 100 0.97
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
Found at i:164419099 original size:40 final size:40
Alignment explanation
Indices: 164419040--164419181 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
164419030 AAATTGAATG
* * *
164419040 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
164419080 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
164419120 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
164419160 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
164419182 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:164419205 original size:40 final size:39
Alignment explanation
Indices: 164419078--164419207 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
164419068 ATGCTGGAAA
* * *
164419078 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC
* *
164419119 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C
*
164419157 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC
164419198 TTATATCCGG
1 TTATATCCGG
164419208 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC
Found at i:164420607 original size:28 final size:28
Alignment explanation
Indices: 164420567--164420635 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
164420557 GGGTGTTACA
* * *
164420567 CACTAAGTGTGCGAGTTTGATTA-TATAT
1 CACTAAGTGTGCGAGTTCGACTATTA-AG
164420595 CACTAAGTGTGCGAGTTCGACTATTAAG
1 CACTAAGTGTGCGAGTTCGACTATTAAG
164420623 CACTAAGTGTGCG
1 CACTAAGTGTGCG
164420636 GGCTTATTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 35 0.95
29 2 0.05
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTCGACTATTAAG
Found at i:164428868 original size:40 final size:40
Alignment explanation
Indices: 164428809--164428950 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
164428799 AAATTGAATG
* * *
164428809 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
164428849 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
164428889 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
164428929 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
164428951 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:164428974 original size:40 final size:39
Alignment explanation
Indices: 164428847--164428976 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
164428837 ATGCTGGAAA
* * *
164428847 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC
* *
164428888 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C
*
164428926 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC
164428967 TTATATCCGG
1 TTATATCCGG
164428977 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC
Found at i:164436066 original size:40 final size:40
Alignment explanation
Indices: 164436007--164436148 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
164435997 AAATTGAATG
* * *
164436007 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
164436047 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
164436087 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
164436127 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
164436149 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:164436172 original size:40 final size:39
Alignment explanation
Indices: 164436045--164436174 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
164436035 ATGCTGGAAA
* * *
164436045 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC
* *
164436086 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C
*
164436124 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC
164436165 TTATATCCGG
1 TTATATCCGG
164436175 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC
Found at i:164437571 original size:28 final size:28
Alignment explanation
Indices: 164437531--164437599 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
164437521 GGGTGTTACA
* * *
164437531 CACTAAGTGTGCGAGTTTGATTA-TATAT
1 CACTAAGTGTGCGAGTTCGACTATTA-AG
164437559 CACTAAGTGTGCGAGTTCGACTATTAAG
1 CACTAAGTGTGCGAGTTCGACTATTAAG
164437587 CACTAAGTGTGCG
1 CACTAAGTGTGCG
164437600 GGCTTATTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 35 0.95
29 2 0.05
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTCGACTATTAAG
Found at i:164445929 original size:40 final size:40
Alignment explanation
Indices: 164445885--164446064 Score: 188
Period size: 40 Copynumber: 4.5 Consensus size: 40
164445875 GCTCGATTGT
* * *
164445885 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACATAGCCCGGATT-TAGTAACTCGCACAAATGC
164445925 CTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
164445965 CTTC-GGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
164446004 CTTCGGGA-ATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAG-CCCGGATTTAGTAAC-TCGCACAAATGC
*
164446045 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACATAGCCCGGAT
164446065 ACATTCGAAT
Statistics
Matches: 116, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
39 36 0.31
40 51 0.44
41 27 0.23
42 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:164445992 original size:39 final size:40
Alignment explanation
Indices: 164445913--164446064 Score: 189
Period size: 39 Copynumber: 3.8 Consensus size: 40
164445903 TTATAGTGAT
* *
164445913 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAAC
1 TCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAAC
* * *
164445953 TCGCACAAATGCCTTC-GGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAAC
* *
164445992 TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAAC
* * * *
164446032 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 -TCGCACAAATGCCTTCGGGAATTAACCCGGAT
164446065 ACATTCGAAT
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 35 0.37
40 33 0.35
41 27 0.28
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAAC
Found at i:164446005 original size:79 final size:81
Alignment explanation
Indices: 164445885--164446062 Score: 227
Period size: 79 Copynumber: 2.2 Consensus size: 81
164445875 GCTCGATTGT
* * * * * * *
164445885 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAG
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAG
* *
164445949 TAAC-TCGCACAAATGC
65 TAACTTAGCACAAAAGC
164445965 CTTC-GGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
*
164446029 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
*
164446045 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAACCCGG
164446063 ATACATTCGA
Statistics
Matches: 84, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 53 0.63
80 19 0.23
81 12 0.14
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
AACTTAGCACAAAAGC
Found at i:164454021 original size:39 final size:40
Alignment explanation
Indices: 164453925--164454104 Score: 204
Period size: 40 Copynumber: 4.5 Consensus size: 40
164453915 GCTCGATTGT
* * * *
164453925 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGC
*
164453965 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCA-AAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
164454004 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
164454044 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGGATTTAGTAAC-TCGCACAAATGC
164454085 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACTTAGCCCGGAT
164454105 ATCATTCGAA
Statistics
Matches: 118, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 34 0.29
40 54 0.46
41 29 0.25
42 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:164454021 original size:79 final size:81
Alignment explanation
Indices: 164453925--164454102 Score: 236
Period size: 79 Copynumber: 2.2 Consensus size: 81
164453915 GCTCGATTGT
* * * *
164453925 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAG
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAG
* *
164453989 TAAC-TCGCA-AAATGC
65 TAACTTAGCACAAAAGC
* * *
164454004 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
*
164454069 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
164454085 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
164454103 ATATCATTCG
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 58 0.68
80 5 0.06
81 22 0.26
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
AACTTAGCACAAAAGC
Found at i:164457100 original size:17 final size:20
Alignment explanation
Indices: 164457078--164457115 Score: 55
Period size: 17 Copynumber: 2.0 Consensus size: 20
164457068 ACCCTACATC
164457078 AATAATT-AAT-TAGG-TAA
1 AATAATTGAATCTAGGCTAA
164457095 AATAATTGAATCTAGGCTAA
1 AATAATTGAATCTAGGCTAA
164457115 A
1 A
164457116 GGAACTCGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
18 3 0.17
19 4 0.22
20 4 0.22
ACGTcount: A:0.50, C:0.05, G:0.13, T:0.32
Consensus pattern (20 bp):
AATAATTGAATCTAGGCTAA
Found at i:164458178 original size:24 final size:24
Alignment explanation
Indices: 164458143--164458195 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
164458133 CATAGAATTA
* * *
164458143 GACATAATAGTAGATGTAGCCACT
1 GACATAAAAGTAGAAGTAACCACT
164458167 GACATAAAAGTAGAAGTAACCACT
1 GACATAAAAGTAGAAGTAACCACT
*
164458191 AACAT
1 GACAT
164458196 GTAGCTTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.45, C:0.17, G:0.17, T:0.21
Consensus pattern (24 bp):
GACATAAAAGTAGAAGTAACCACT
Found at i:164460780 original size:53 final size:53
Alignment explanation
Indices: 164460721--164460826 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
164460711 TAATTTATGC
*
164460721 TTTCTAGTAGTTTTTATTACATTTTATATATTTAAATAAGGTTAGATGAGCTT
1 TTTCTAGTAGTTTTTATTACATTTTATATATTTAAATAAGGTTACATGAGCTT
164460774 TTTCTAGTAGTTTTTATTACATTTTATATATTTAAATAAGGTTACATGAGCTT
1 TTTCTAGTAGTTTTTATTACATTTTATATATTTAAATAAGGTTACATGAGCTT
164460827 GTAGGTCAAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.30, C:0.07, G:0.12, T:0.51
Consensus pattern (53 bp):
TTTCTAGTAGTTTTTATTACATTTTATATATTTAAATAAGGTTACATGAGCTT
Found at i:164461795 original size:13 final size:14
Alignment explanation
Indices: 164461772--164461801 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
164461762 CCCCAAATTG
164461772 CAATCCCTTAGGTA
1 CAATCCCTTAGGTA
164461786 CAAT-CCTTAGGTA
1 CAATCCCTTAGGTA
164461799 CAA
1 CAA
164461802 GCAAGTCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (14 bp):
CAATCCCTTAGGTA
Found at i:164468768 original size:18 final size:18
Alignment explanation
Indices: 164468745--164468782 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
164468735 AATATATATT
164468745 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
164468763 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
164468781 AA
1 AA
164468783 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:164468775 original size:13 final size:13
Alignment explanation
Indices: 164468759--164468783 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
164468749 CAAGTACCCA
164468759 ACCCAACCCAATT
1 ACCCAACCCAATT
164468772 ACCCAACCCAAT
1 ACCCAACCCAAT
164468784 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:164468879 original size:9 final size:9
Alignment explanation
Indices: 164468865--164468941 Score: 91
Period size: 9 Copynumber: 8.6 Consensus size: 9
164468855 TTTATACAAA
164468865 TAATTCGGT
1 TAATTCGGT
164468874 TAATTCGGT
1 TAATTCGGT
* *
164468883 TAATTTGGG
1 TAATTCGGT
*
164468892 TAATTCGGG
1 TAATTCGGT
164468901 TAATTCGGT
1 TAATTCGGT
*
164468910 TAATTCGAT
1 TAATTCGGT
**
164468919 TAATTTAGT
1 TAATTCGGT
*
164468928 TAATTCGTT
1 TAATTCGGT
164468937 TAATT
1 TAATT
164468942 TTATACTTAT
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 57 1.00
ACGTcount: A:0.26, C:0.08, G:0.19, T:0.47
Consensus pattern (9 bp):
TAATTCGGT
Found at i:164470028 original size:43 final size:43
Alignment explanation
Indices: 164469980--164470064 Score: 161
Period size: 43 Copynumber: 2.0 Consensus size: 43
164469970 ATGACACAAG
164469980 GACTATGTTTCAAAAATAAAATGGCTAGAGCCTCCCTAGTAAT
1 GACTATGTTTCAAAAATAAAATGGCTAGAGCCTCCCTAGTAAT
*
164470023 GACTATGTTTCAAAAGTAAAATGGCTAGAGCCTCCCTAGTAA
1 GACTATGTTTCAAAAATAAAATGGCTAGAGCCTCCCTAGTAA
164470065 CACAGAGAAC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (43 bp):
GACTATGTTTCAAAAATAAAATGGCTAGAGCCTCCCTAGTAAT
Found at i:164480581 original size:40 final size:40
Alignment explanation
Indices: 164480536--164480665 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
164480526 CGGAATACAA
**
164480536 CCGGATATAACCAAGAGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* ** *
164480576 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
164480616 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
164480656 CCGGATATAA
1 CCGGATATAA
164480666 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 2 0.03
40 72 0.97
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:164480680 original size:40 final size:40
Alignment explanation
Indices: 164480536--164480703 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
164480526 CGGAATACAA
* **
164480536 CCGGATATAACCAAGAGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
164480576 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
164480616 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
164480656 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
164480696 CCGGATAT
1 CCGGATAT
164480704 CATTCAATTT
Statistics
Matches: 103, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 101 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:164480686 original size:80 final size:80
Alignment explanation
Indices: 164480551--164480701 Score: 191
Period size: 80 Copynumber: 1.9 Consensus size: 80
164480541 TATAACCAAG
* *
164480551 AGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 AGCACGAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGC
164480616 CCGGATGTAGCCACT
66 CCGGATGTAGCCACT
* ** * *
164480631 AGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTT
1 AGCACGAA-TGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTT
164480693 AGCCCGGAT
63 AGCCCGGAT
164480702 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
79 5 0.08
80 56 0.92
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
AGCACGAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGC
CCGGATGTAGCCACT
Found at i:164480881 original size:124 final size:124
Alignment explanation
Indices: 164480661--164480884 Score: 297
Period size: 124 Copynumber: 1.8 Consensus size: 124
164480651 TTAACCCGGA
* * * * * *
164480661 TATAATTTCCAGCATAATTGTCTTCGGGGCTTAGCCCGGATATCATTCAATTTCTCATGCACACA
1 TATAATTACCAGCATAATCGCCTTCGGGACTTAGCCCGGATATCATTCAATTACTCATACACACA
* * **
164480726 GACATCAATAATCATTGGACATACATATTTCATTTTCGTTACTAAGGCTCCAACACAAT
66 GAAATCAATAATCAATACACATACATATTTCATTTTCGTTACTAAGGCTCCAACACAAT
* * *
164480785 TATAATTACTAGCATAATCGCCTTCGGGACTTAGCCCGGGTATCATTTGAA-TACTCATACACAC
1 TATAATTACCAGCATAATCGCCTTCGGGACTTAGCCCGGATATCA-TTCAATTACTCATACACAC
* *
164480849 ATAAATCAATAATCAATACACATCCATATTTCATTT
65 AGAAATCAATAATCAATACACATACATATTTCATTT
164480885 CACATAATTC
Statistics
Matches: 84, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
124 80 0.95
125 4 0.05
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.33
Consensus pattern (124 bp):
TATAATTACCAGCATAATCGCCTTCGGGACTTAGCCCGGATATCATTCAATTACTCATACACACA
GAAATCAATAATCAATACACATACATATTTCATTTTCGTTACTAAGGCTCCAACACAAT
Found at i:164488575 original size:40 final size:40
Alignment explanation
Indices: 164488530--164488659 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
164488520 CGGAATACAA
**
164488530 CCGGATATAACCAAGAGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* ** *
164488570 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
164488610 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
164488650 CCGGATATAA
1 CCGGATATAA
164488660 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 2 0.03
40 72 0.97
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:164488674 original size:40 final size:40
Alignment explanation
Indices: 164488530--164488696 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
164488520 CGGAATACAA
* **
164488530 CCGGATATAACCAAGAGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
164488570 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
164488610 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
164488650 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
164488689 CCGGATAT
1 CCGGATAT
164488697 CATTCAATTT
Statistics
Matches: 103, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
39 15 0.15
40 88 0.85
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:164499512 original size:25 final size:23
Alignment explanation
Indices: 164499460--164499514 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
164499450 TATAAATAGT
164499460 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
164499483 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
164499508 AATAGTG
1 AATAGTG
164499515 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:164499690 original size:25 final size:25
Alignment explanation
Indices: 164499660--164499792 Score: 75
Period size: 25 Copynumber: 5.6 Consensus size: 25
164499650 AGAAAAAAAA
164499660 ATATATAAATAATATAGTATTAAAG
1 ATATATAAATAATATAGTATTAAAG
* * *
164499685 ATATATACATAAAATAGTA-TAATAT
1 ATATATAAATAATATAGTATTAA-AG
** * *
164499710 ATATATACGTAATATAGAATT-TAG
1 ATATATAAATAATATAGTATTAAAG
** *
164499734 A-ATAT-ACCAATATA-T-TAAAAG
1 ATATATAAATAATATAGTATTAAAG
* *
164499755 AATATATATATAATATAATATTAAA-
1 -ATATATAAATAATATAGTATTAAAG
*
164499780 AAATAT-AATAATA
1 ATATATAAATAATA
164499793 ACAAAAAAAG
Statistics
Matches: 80, Mismatches: 20, Indels: 18
0.68 0.17 0.15
Matches are distributed among these distances:
20 1 0.01
21 2 0.03
22 7 0.09
23 14 0.17
24 16 0.20
25 35 0.44
26 5 0.06
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAGTATTAAAG
Found at i:164500110 original size:16 final size:16
Alignment explanation
Indices: 164500072--164500110 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
164500062 ATCTCCAAAA
*
164500072 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
164500088 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
164500104 AATAACT
1 AAAAACT
164500111 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:164500304 original size:30 final size:30
Alignment explanation
Indices: 164500268--164500335 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 30
164500258 AGGTACAAGT
164500268 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
* *
164500298 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
164500328 GGTGGTGG
1 GGTGGTGG
164500336 CAAAGGCTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.18, C:0.06, G:0.51, T:0.25
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
Found at i:164500653 original size:3 final size:3
Alignment explanation
Indices: 164500645--164500684 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
164500635 AAAAGCTCTG
164500645 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
164500685 ACCTACGGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:164502121 original size:18 final size:18
Alignment explanation
Indices: 164502095--164502145 Score: 93
Period size: 18 Copynumber: 2.8 Consensus size: 18
164502085 GTACATTTGG
164502095 TCAAGTGAAGAAGAATTT
1 TCAAGTGAAGAAGAATTT
*
164502113 TCAAATGAAGAAGAATTT
1 TCAAGTGAAGAAGAATTT
164502131 TCAAGTGAAGAAGAA
1 TCAAGTGAAGAAGAA
164502146 CAAGATGAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.49, C:0.06, G:0.22, T:0.24
Consensus pattern (18 bp):
TCAAGTGAAGAAGAATTT
Found at i:164502154 original size:33 final size:33
Alignment explanation
Indices: 164502095--164502167 Score: 94
Period size: 33 Copynumber: 2.1 Consensus size: 33
164502085 GTACATTTGG
*
164502095 TCAAGTGAAGAAGAATTTTCAAATGAAGAAGAATTT
1 TCAAGTGAAGAAGAA---TCAAATGAAGAAGAAATT
164502131 TCAAGTGAAGAAGAA-CAAGATGAAGAAGAAATT
1 TCAAGTGAAGAAGAATCAA-ATGAAGAAGAAATT
164502164 TCAA
1 TCAA
164502168 AGGAGGATGT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
32 3 0.09
33 17 0.49
36 15 0.43
ACGTcount: A:0.51, C:0.07, G:0.21, T:0.22
Consensus pattern (33 bp):
TCAAGTGAAGAAGAATCAAATGAAGAAGAAATT
Found at i:164502703 original size:25 final size:26
Alignment explanation
Indices: 164502657--164502708 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
164502647 TTTTATAATC
*
164502657 TTAATACAATGAATTTATAAAAATAA
1 TTAATAAAATGAATTTATAAAAATAA
*
164502683 TTAATAAAATG-ATTTATAAAAGTAA
1 TTAATAAAATGAATTTATAAAAATAA
164502708 T
1 T
164502709 AACTTGAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.37
Consensus pattern (26 bp):
TTAATAAAATGAATTTATAAAAATAA
Found at i:164504823 original size:24 final size:24
Alignment explanation
Indices: 164504780--164504825 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
164504770 TAGACGACGG
**
164504780 ACAAATAGGATTGGAGGACGATGA
1 ACAAATAGGATCAGAGGACGATGA
*
164504804 ACAAATAGGATCAGATGACGAT
1 ACAAATAGGATCAGAGGACGAT
164504826 CCATTCTCCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.43, C:0.11, G:0.28, T:0.17
Consensus pattern (24 bp):
ACAAATAGGATCAGAGGACGATGA
Found at i:164509274 original size:26 final size:26
Alignment explanation
Indices: 164509237--164509372 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
164509227 TGATACAAAT
* *
164509237 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
164509263 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
164509289 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
164509315 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
164509341 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
164509367 TGATAA
1 TGATAA
164509373 GAATTTCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:164510548 original size:8 final size:8
Alignment explanation
Indices: 164510535--164510570 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
164510525 CTAGATCGGC
164510535 AAAAGCCG
1 AAAAGCCG
164510543 AAAAGCCG
1 AAAAGCCG
164510551 AAAAGCCG
1 AAAAGCCG
*
164510559 AAATGCCG
1 AAAAGCCG
164510567 AAAA
1 AAAA
164510571 CTGGTATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.53, C:0.22, G:0.22, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:164512187 original size:27 final size:28
Alignment explanation
Indices: 164512134--164512197 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
164512124 CTAGTTTGGT
*
164512134 TCCATGCTCCCTTTTTCTCTTCTGTTCA
1 TCCATGCTCCCTTTTTCTCTTCGGTTCA
164512162 TCCATGCTCCCTTTTTCTCTT-GGTTCA
1 TCCATGCTCCCTTTTTCTCTTCGGTTCA
164512189 TCCATGCTC
1 TCCATGCTC
164512198 GGCTTCCAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 14 0.40
28 21 0.60
ACGTcount: A:0.08, C:0.36, G:0.09, T:0.47
Consensus pattern (28 bp):
TCCATGCTCCCTTTTTCTCTTCGGTTCA
Found at i:164512606 original size:10 final size:9
Alignment explanation
Indices: 164512587--164512622 Score: 54
Period size: 10 Copynumber: 3.8 Consensus size: 9
164512577 GAAGAGAGGG
164512587 GAAAAAAAA
1 GAAAAAAAA
164512596 GAAAAATAAA
1 GAAAAA-AAA
164512606 GAAATAAAAA
1 GAAA-AAAAA
164512616 GAAAAAA
1 GAAAAAA
164512623 TTAAATTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 9 0.36
10 14 0.56
11 2 0.08
ACGTcount: A:0.83, C:0.00, G:0.11, T:0.06
Consensus pattern (9 bp):
GAAAAAAAA
Found at i:164518166 original size:3 final size:3
Alignment explanation
Indices: 164518103--164518151 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
164518093 TCATTTCACA
164518103 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
164518151 T
1 T
164518152 TGGACTATTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Done.