Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 530 of 770
Found at i:164530679 original size:46 final size:44
Alignment explanation
Indices: 164530620--164530734 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
164530610 ACAGGACAGA
* *
164530620 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
164530666 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
164530710 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
164530735 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:164530715 original size:44 final size:45
Alignment explanation
Indices: 164530620--164530753 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
164530610 ACAGGACAGA
* *
164530620 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
164530666 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
164530710 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
164530754 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:164535953 original size:42 final size:45
Alignment explanation
Indices: 164535889--164536001 Score: 162
Period size: 42 Copynumber: 2.6 Consensus size: 45
164535879 ATGATGGGCT
164535889 TTAACCCCCTAAGCAGTAGGGTAACAAGCTG-A-ATTTACA-AGCC
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGATTTACAGA-CC
* *
164535932 TTAA-CCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATC
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGATTTACAGACC
*
164535976 TTAACCCCCTAAGCAGTAGGGAAACA
1 TTAACCCCCTAAGCAGTAGGGTAACA
164536002 GATCGAAGAC
Statistics
Matches: 63, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
42 25 0.40
43 5 0.08
44 12 0.19
45 21 0.33
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.20
Consensus pattern (45 bp):
TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGATTTACAGACC
Found at i:164536022 original size:44 final size:43
Alignment explanation
Indices: 164535843--164536132 Score: 191
Period size: 44 Copynumber: 6.7 Consensus size: 43
164535833 AATTCGCAGA
* * * * *
164535843 TCTTGACCCCCTAAGCAGTAGGGAAATAGATCGAAGATGATGG
1 TCTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGACGAAGG
* * *
164535886 GCTTTAACCCCCTAAGCAGTAGGGTAACA-AGCTGAATTTAC-AA-G
1 TC-TTAACCCCCTAAGCAGTAGGGTAACAGATC-GAA--GACGAAGG
* * ** *
164535930 CCTTAA-CCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAGA
1 TCTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-CGA-AGG
*
164535974 TCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGG
1 TCTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGACGAA-GG
* * * ** * *
164536018 TCTTAAACCCCTGAGCAGTAGGGTAACAGACCGAA-TTGTAGA
1 TCTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGACGAAGG
* * * * *
164536060 CCTTATCCCCCTAAGTAGTGGGGAAACAGATCGAAGACGAAGGG
1 TCTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGACGAA-GG
*
164536104 TCTTAA-ACCCTAAG-AGGTAGGGTAACAGA
1 TCTTAACCCCCTAAGCA-GTAGGGTAACAGA
164536133 CCAAATTGCA
Statistics
Matches: 189, Mismatches: 43, Indels: 30
0.72 0.16 0.11
Matches are distributed among these distances:
40 1 0.01
42 57 0.30
43 31 0.16
44 71 0.38
45 27 0.14
46 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.19
Consensus pattern (43 bp):
TCTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGACGAAGG
Found at i:164536044 original size:89 final size:88
Alignment explanation
Indices: 164535929--164536343 Score: 368
Period size: 86 Copynumber: 4.8 Consensus size: 88
164535919 GAATTTACAA
* *
164535929 GCCTT-AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGT
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAA-ATTTGCAGATCTTATCCCCCTAAGCAGT
164535993 AGGGAAACAGATCGAAGACGAAGG
65 AGGGAAACAGATCGAAGACGAAGG
* * * * * * * *
164536017 GTCTTAAACCCCTGAGCAGTAGGGTAACAGACCG-AA-TTGTAGACCTTATCCCCCTAAGTAGTG
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTTGCAGATCTTATCCCCCTAAGCAGTA
164536080 GGGAAACAGATCGAAGACGAAGG
66 GGGAAACAGATCGAAGACGAAGG
* * * * *
164536103 GTCTTAAA-CCCTAAG-AGGTAGGGTAACAGAC-CAAA-TTGCAAAT-TT-TGCCTCCCTGAAGT
1 GCCTTAAACCCCTAAGCA-GTAGGGTAACAGGCTGAAATTTGCAGATCTTAT-CC-CCCT-AAGC
* ** *
164536162 TGTAGTGG-AGTAGATCAAAGACGAAGG
62 AGTAG-GGAAACAGATCGAAGACGAAGG
* * * * * *
164536189 GCCTTAAACCCCTAAACAGTAGGGTAATAGGCTGAAAATTTGTAGATCTCATCACCCTAAGCAAT
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTG-AAATTTGCAGATCTTATCCCCCTAAGCAGT
* * *
164536254 AGGGAAATAGATCGAAGACGACGA
65 AGGGAAACAGATCGAAGACGAAGG
* * * * *
164536278 GCCTT-AACCCCTTAAGCAGTAAGGTAACAGGCTAGAAA-TTGTAGACCCTATCTCCCTAAGCAG
1 GCCTTAAACCCC-TAAGCAGTAGGGTAACAGGCT-GAAATTTGCAGATCTTATCCCCCTAAGCAG
164536341 TAG
64 TAG
164536344 TGGAGTAGGC
Statistics
Matches: 266, Mismatches: 44, Indels: 34
0.77 0.13 0.10
Matches are distributed among these distances:
83 1 0.00
84 5 0.02
85 31 0.12
86 82 0.31
87 21 0.08
88 37 0.14
89 75 0.28
90 11 0.04
91 2 0.01
92 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.20
Consensus pattern (88 bp):
GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTTGCAGATCTTATCCCCCTAAGCAGTA
GGGAAACAGATCGAAGACGAAGG
Found at i:164536096 original size:131 final size:131
Alignment explanation
Indices: 164535839--164536088 Score: 328
Period size: 131 Copynumber: 1.9 Consensus size: 131
164535829 GGCGAATTCG
* * * * *
164535839 CAGATCTTGACCCCCTAAGCAGTAGGGAAATAGATCGAAGATGATGGGCTTTAACCCCCTAAGCA
1 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCTTTAAACCCCTAAGCA
* *
164535904 GTAGGGTAACAAGCTGAATTTACAAGCCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTT
66 GTAGGGTAACAAGCCGAATTTACAAGCCTTAACCCCTAAGCAGTAGGGAAACAGGCTGAAGATTT
164535969 A
131 A
*
164535970 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGG-TCTTAAACCCCTGAGC
1 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCT-TTAAACCCCTAAGC
* * * *
164536034 AGTAGGGTAAC-AGACCGAATTGTA-GA-CCTTATCCCCCTAAGTAGTGGGGAAACAG
65 AGTAGGGTAACAAG-CCGAATT-TACAAGCCTTA-ACCCCTAAGCAGTAGGGAAACAG
164536089 ATCGAAGACG
Statistics
Matches: 103, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
130 8 0.08
131 93 0.90
132 2 0.02
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (131 bp):
CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCTTTAAACCCCTAAGCA
GTAGGGTAACAAGCCGAATTTACAAGCCTTAACCCCTAAGCAGTAGGGAAACAGGCTGAAGATTT
A
Found at i:164538142 original size:24 final size:24
Alignment explanation
Indices: 164538105--164538203 Score: 94
Period size: 24 Copynumber: 4.0 Consensus size: 24
164538095 ATGATTTTCT
164538105 TTTTATATACATTATTTATTTTAAAC
1 TTTTATAT--ATTATTTATTTTAAAC
* *
164538131 TTTTACATATTATTTATTTCAAA-
1 TTTTATATATTATTTATTTTAAAC
* * *
164538154 TTTATATACATTATGTA-GTTAAAC
1 TTT-TATATATTATTTATTTTAAAC
164538178 TATTTTATATATTATTTATTTTAAAC
1 --TTTTATATATTATTTATTTTAAAC
164538204 CCTCTTTATT
Statistics
Matches: 58, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
23 7 0.12
24 24 0.41
25 11 0.19
26 16 0.28
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.56
Consensus pattern (24 bp):
TTTTATATATTATTTATTTTAAAC
Found at i:164538194 original size:49 final size:48
Alignment explanation
Indices: 164538106--164538198 Score: 134
Period size: 49 Copynumber: 1.9 Consensus size: 48
164538096 TGATTTTCTT
* *
164538106 TTTATATACATTATTTATTTTAAACTTTTACATATTATTTATTTCAAA
1 TTTATATACATTATGTATGTTAAACTTTTACATATTATTTATTTCAAA
*
164538154 TTTATATACATTATGTA-GTTAAACTATTTTATATATTATTTATTT
1 TTTATATACATTATGTATGTTAAAC--TTTTACATATTATTTATTT
164538199 TAAACCCTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
47 6 0.15
48 16 0.40
49 18 0.45
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.57
Consensus pattern (48 bp):
TTTATATACATTATGTATGTTAAACTTTTACATATTATTTATTTCAAA
Found at i:164550966 original size:40 final size:39
Alignment explanation
Indices: 164550922--164551047 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
164550912 GGGACTCAAC
*
164550922 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
164550962 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
164551002 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
164551042 CCGGAT
1 CCGGAT
164551048 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:164551006 original size:80 final size:80
Alignment explanation
Indices: 164550861--164551047 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
164550851 GCTACACATT
* * *
164550861 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
164550925 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
164550941 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
164551004 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
164551022 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
164551048 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:164559038 original size:40 final size:39
Alignment explanation
Indices: 164558994--164559119 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
164558984 GGGACTCAAC
*
164558994 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
164559034 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
164559074 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
164559114 CCGGAT
1 CCGGAT
164559120 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:164559078 original size:80 final size:80
Alignment explanation
Indices: 164558933--164559119 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
164558923 GCTACACATT
* * *
164558933 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
164558997 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
164559013 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
164559076 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
164559094 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
164559120 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:164562246 original size:43 final size:45
Alignment explanation
Indices: 164562186--164562299 Score: 171
Period size: 45 Copynumber: 2.6 Consensus size: 45
164562176 ATGATGGGCT
164562186 TTAACCCCCTAAGCAGTAGGGTAACAAGCTG-A-ATTTACA-AGCC
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGATTTACAGA-CC
* *
164562229 TTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATC
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGATTTACAGACC
*
164562274 TTAACCCCCTAAGCAGTAGGGAAACA
1 TTAACCCCCTAAGCAGTAGGGTAACA
164562300 GATCGAAGAC
Statistics
Matches: 65, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
43 30 0.46
44 1 0.02
45 33 0.51
46 1 0.02
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (45 bp):
TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGATTTACAGACC
Found at i:164562308 original size:45 final size:44
Alignment explanation
Indices: 164562136--164562394 Score: 192
Period size: 44 Copynumber: 5.9 Consensus size: 44
164562126 GGCGAATTCG
* * *
164562136 CAGATCTTGACCCCCTAAGCAGTAGGGAAATAGATCGAAGATGA
1 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATTA
* ** * * *
164562180 -TGGGCTTTAACCCCCTAAGCAGTAGGGTAACA-AGCTGAA-TTTA
1 CAGATC-TTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGATTA
* * *
164562223 CA-AGCCTTAACCCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTA
1 CAGA-TCTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGA-TTA
**
164562268 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA
1 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATTA
* * * * * *
164562312 -AGGGTCTTAAACCCCTGAGCAGTAGGGTAACAGACCG-A-ATTG
1 CA-GATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATTA
* * * *
164562354 CAGACCTTATCCCCCTAAGTAGTGGGGAAACAGATCGAAGA
1 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGA
164562395 CGAAGGGTCT
Statistics
Matches: 167, Mismatches: 35, Indels: 26
0.73 0.15 0.11
Matches are distributed among these distances:
42 27 0.16
43 42 0.25
44 59 0.35
45 37 0.22
46 2 0.01
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (44 bp):
CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATTA
Found at i:164562335 original size:44 final size:44
Alignment explanation
Indices: 164562147--164562430 Score: 167
Period size: 44 Copynumber: 6.5 Consensus size: 44
164562137 AGATCTTGAC
* * * *
164562147 CCCCTAAGCAGTAGGGAAATAGATCGAAGATGATGGG-CTTTAAC
1 CCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTC-TTAAA
* * * * *
164562191 CCCCTAAGCAGTAGGGTAACA-AGCTGAATTTAC-AA--GCCTTAAC
1 CCCCTAAGCAGTAGGGAAACAGATC-GAA--GACGAAGGGTCTTAAA
* * ** * *
164562234 CCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACA-GATCTTAAC
1 CCCCTAAGCAGTAGGGAAACAGATC-GAAGA-CGA-AGGGTCTTAAA
164562279 CCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAA
1 CCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAA
* * * ** * ** **
164562323 CCCCTGAGCAGTAGGGTAACAGACCGAA-TTGCA-GACCTTATC
1 CCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAA
* *
164562365 CCCCTAAGTAGTGGGGAAACAGATCGAAGACGAAGGGTCTTAAA
1 CCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAA
*
164562409 -CCCTAAG-AGGTAGGGTAACAGA
1 CCCCTAAGCA-GTAGGGAAACAGA
164562431 CCAAATTGCA
Statistics
Matches: 186, Mismatches: 40, Indels: 29
0.73 0.16 0.11
Matches are distributed among these distances:
41 1 0.01
42 29 0.16
43 59 0.32
44 62 0.33
45 33 0.18
46 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (44 bp):
CCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAA
Found at i:164562339 original size:89 final size:87
Alignment explanation
Indices: 164562226--164562641 Score: 380
Period size: 86 Copynumber: 4.7 Consensus size: 87
164562216 GAATTTACAA
* * *
164562226 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGT
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAA-A-TTGCAGATCTTATCCCCCTAAGCAGT
164562291 AGGGAAACAGATCGAAGACGAAGG
64 AGGGAAACAGATCGAAGACGAAGG
* * * * * * *
164562315 GTCTTAAACCCCTGAGCAGTAGGGTAACAGACCG-AATTGCAGACCTTATCCCCCTAAGTAGTGG
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTGCAGATCTTATCCCCCTAAGCAGTAG
164562379 GGAAACAGATCGAAGACGAAGG
66 GGAAACAGATCGAAGACGAAGG
* * * * **
164562401 GTCTTAAA-CCCTAAG-AGGTAGGGTAACAGAC-CAAATTGCAAAT-TT-TGCCTCCCTGAAGTT
1 GCCTTAAACCCCTAAGCA-GTAGGGTAACAGGCTGAAATTGCAGATCTTAT-CC-CCCT-AAGCA
** *
164562461 GTAGTGG-AGTAGATCAAAGACGAAGG
62 GTAG-GGAAACAGATCGAAGACGAAGG
* * * * *
164562487 GCCTTAAACCCCTAAACAGTAGGGTAATAGGCTGAAAATTTGTAGATCTCATCACCCTAAGCAGT
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTG-AAA-TTGCAGATCTTATCCCCCTAAGCAGT
* * *
164562552 AGGGAAATAGATCGAAGACGACGA
64 AGGGAAACAGATCGAAGACGAAGG
* * * * * *
164562576 GCCTT-AACCCCTTAAGCAGTAAGGTAACAGGCTAGAAATTGTAGACCCTATCTCACTAAGCAGT
1 GCCTTAAACCCC-TAAGCAGTAGGGTAACAGGCT-GAAATTGCAGATCTTATCCCCCTAAGCAGT
164562640 AG
64 AG
164562642 TGGAGTAGGC
Statistics
Matches: 269, Mismatches: 42, Indels: 33
0.78 0.12 0.10
Matches are distributed among these distances:
83 1 0.00
84 5 0.02
85 32 0.12
86 83 0.31
87 21 0.08
88 33 0.12
89 80 0.30
90 11 0.04
91 2 0.01
92 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (87 bp):
GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTGCAGATCTTATCCCCCTAAGCAGTAG
GGAAACAGATCGAAGACGAAGG
Found at i:164565286 original size:80 final size:79
Alignment explanation
Indices: 164565122--164565307 Score: 209
Period size: 80 Copynumber: 2.3 Consensus size: 79
164565112 AATTGAATGA
* ** * *
164565122 TATCCGGGCTAAGTCCCGAAGATGTTAATGCTGGAAATATATCCGGGTTAAGACCCGAAGGCAAT
1 TATCCGGGCTAAGTCCCGAGGACATTTATGCTGGAAATATATCCGGGCTAAGACCCGAAGGCAAT
*
164565187 TGTGCTAGTGGCTAC
66 TGTGCGAGT-GCTAC
* *
164565202 -ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGC-A
1 TATCCGGGCTAAGTCCCGAGGACATTTATGCT-GGAAATATATCCGGGCTAAGACCCGAAGGCAA
*
164565265 TTCGTGCGAGT-CATTC
65 TT-GTGCGAGTGC-TAC
*
164565281 TATCCGGGCTAAGACCCGAAGG-CATTT
1 TATCCGGGCTAAGTCCCG-AGGACATTT
164565308 GTGCAAATCG
Statistics
Matches: 91, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 32 0.35
80 55 0.60
81 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
TATCCGGGCTAAGTCCCGAGGACATTTATGCTGGAAATATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCGAGTGCTAC
Found at i:164565326 original size:40 final size:40
Alignment explanation
Indices: 164565159--164565311 Score: 182
Period size: 40 Copynumber: 3.8 Consensus size: 40
164565149 ATGCTGGAAA
* * ***
164565159 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTCAT
* * * *
164565199 TACATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAAT
1 TATATCCGGGCTAAGACCCGAAGG-CATTTGTGCTAGTCAT
* *
164565239 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTCAT
*
164565279 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGC
164565312 AAATCGTGAT
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 3 0.03
40 89 0.94
41 3 0.03
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTCAT
Found at i:164573396 original size:80 final size:81
Alignment explanation
Indices: 164573232--164573417 Score: 224
Period size: 80 Copynumber: 2.3 Consensus size: 81
164573222 AATTGAATGA
* * *
164573232 TATCCGGGCTAAGTCCCGA--AGATTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 TATCCGGGCTAAGTCCCGAGGACATTTAATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCA
*
164573295 ATTGTGCTAGTGGCTAC
66 ATTGTGCGAGT-GCTAC
*
164573312 -ATCCGGGCTAAGTCCCGAGGACATTT-ATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGC-
1 TATCCGGGCTAAGTCCCGAGGACATTTAATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCA
*
164573374 ATTCGTGCGAGT-CATTC
66 ATT-GTGCGAGTGC-TAC
*
164573391 TATCCGGGCTAAGACCCGAAGG-CATTT
1 TATCCGGGCTAAGTCCCG-AGGACATTT
164573418 GTGCAAATCG
Statistics
Matches: 93, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
78 1 0.01
79 23 0.25
80 61 0.66
81 8 0.09
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
TATCCGGGCTAAGTCCCGAGGACATTTAATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGCTAC
Found at i:164573437 original size:40 final size:40
Alignment explanation
Indices: 164573231--164573421 Score: 190
Period size: 40 Copynumber: 4.8 Consensus size: 40
164573221 AAATTGAATG
* * * **
164573231 ATATCCGGGCTAAGTCCCGAA-G-ATTTAATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTT-GTGCTAGTCATT
* * ***
164573270 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTCATT
* * * *
164573310 ACATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCTAGTCATT
* *
164573350 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTCATT
*
164573390 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
164573422 AAATCGTGAT
Statistics
Matches: 123, Mismatches: 25, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
39 22 0.18
40 95 0.77
41 6 0.05
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTCATT
Found at i:164575660 original size:2 final size:2
Alignment explanation
Indices: 164575653--164575683 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
164575643 TTTAGATCTT
164575653 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
164575684 TAATTCTCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:164575896 original size:24 final size:24
Alignment explanation
Indices: 164575859--164575957 Score: 94
Period size: 24 Copynumber: 4.0 Consensus size: 24
164575849 ATGATTTTCT
164575859 TTTTATATACATTATTTATTTTAAAC
1 TTTTATAT--ATTATTTATTTTAAAC
* *
164575885 TTTTACATATTATTTATTTCAAA-
1 TTTTATATATTATTTATTTTAAAC
* * *
164575908 TTTATATACATTATGTA-GTTAAAC
1 TTT-TATATATTATTTATTTTAAAC
164575932 TATTTTATATATTATTTATTTTAAAC
1 --TTTTATATATTATTTATTTTAAAC
164575958 CCTCTTTATT
Statistics
Matches: 58, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
23 7 0.12
24 24 0.41
25 11 0.19
26 16 0.28
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.56
Consensus pattern (24 bp):
TTTTATATATTATTTATTTTAAAC
Found at i:164575948 original size:49 final size:48
Alignment explanation
Indices: 164575860--164575952 Score: 134
Period size: 49 Copynumber: 1.9 Consensus size: 48
164575850 TGATTTTCTT
* *
164575860 TTTATATACATTATTTATTTTAAACTTTTACATATTATTTATTTCAAA
1 TTTATATACATTATGTATGTTAAACTTTTACATATTATTTATTTCAAA
*
164575908 TTTATATACATTATGTA-GTTAAACTATTTTATATATTATTTATTT
1 TTTATATACATTATGTATGTTAAAC--TTTTACATATTATTTATTT
164575953 TAAACCCTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
47 6 0.15
48 16 0.40
49 18 0.45
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.57
Consensus pattern (48 bp):
TTTATATACATTATGTATGTTAAACTTTTACATATTATTTATTTCAAA
Found at i:164576296 original size:27 final size:27
Alignment explanation
Indices: 164576265--164576334 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
164576255 CATATTTATA
*
164576265 ATTTTATATATTATTTAGTTCAAAATT
1 ATTTTATACATTATTTAGTTCAAAATT
*
164576292 ATTTTATACCTTATTTAGTTCAAAATT
1 ATTTTATACATTATTTAGTTCAAAATT
*
164576319 ATTTTATACCTTATTT
1 ATTTTATACATTATTT
164576335 TAAAACCATT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.33, C:0.09, G:0.03, T:0.56
Consensus pattern (27 bp):
ATTTTATACATTATTTAGTTCAAAATT
Found at i:164580496 original size:40 final size:40
Alignment explanation
Indices: 164580369--164580498 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
164580359 TATGCTGGAA
* *
164580369 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
164580409 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
164580449 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
164580489 TTATATCCGG
1 TTATATCCGG
164580499 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:164588590 original size:40 final size:40
Alignment explanation
Indices: 164588463--164588592 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
164588453 ATGCTGGAAA
* *
164588463 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
164588503 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
164588543 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
164588583 TTATATCCGG
1 TTATATCCGG
164588593 TTGTATTCCA
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:164590619 original size:23 final size:24
Alignment explanation
Indices: 164590569--164590628 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
164590559 GACCAAGGAG
**
164590569 ATTTGAGCGAAGAGAACGGGAGAA
1 ATTTGAGCGAAGAGAACGAAAGAA
164590593 ATTTGAGCGAAGAGAAC-AAAGAA
1 ATTTGAGCGAAGAGAACGAAAGAA
*
164590616 ATTTGAGTGAAGA
1 ATTTGAGCGAAGA
164590629 TTTGAAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
23 16 0.48
24 17 0.52
ACGTcount: A:0.45, C:0.07, G:0.32, T:0.17
Consensus pattern (24 bp):
ATTTGAGCGAAGAGAACGAAAGAA
Found at i:164590736 original size:36 final size:35
Alignment explanation
Indices: 164590696--164590791 Score: 115
Period size: 35 Copynumber: 2.7 Consensus size: 35
164590686 GGCGATAGGA
*
164590696 TTGGGGAAAATG-ATTTGGGGAAAAAACTTAAGGGAT
1 TTGGGGAAAATGAATTT--GGAAAAAAATTAAGGGAT
*
164590732 TTGGGGAAAATGAATTTGGAAAAAAATTTAGGGAT
1 TTGGGGAAAATGAATTTGGAAAAAAATTAAGGGAT
* * *
164590767 TTCGGGAAACT-AATTTAGAAAAAAA
1 TTGGGGAAAATGAATTTGGAAAAAAA
164590792 ACTAAGGCTA
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
34 13 0.24
35 25 0.46
36 12 0.22
37 4 0.07
ACGTcount: A:0.44, C:0.03, G:0.27, T:0.26
Consensus pattern (35 bp):
TTGGGGAAAATGAATTTGGAAAAAAATTAAGGGAT
Found at i:164594051 original size:12 final size:11
Alignment explanation
Indices: 164594011--164594063 Score: 56
Period size: 12 Copynumber: 4.7 Consensus size: 11
164594001 AATCACTTTA
164594011 ATATTAAATTT
1 ATATTAAATTT
164594022 ATA-TAATATTT
1 ATATTAA-ATTT
164594033 ATCATTAAATTT
1 AT-ATTAAATTT
*
164594045 AATATTAAATCT
1 -ATATTAAATTT
164594057 -TATTAAA
1 ATATTAAA
164594064 ATAATTGAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
10 10 0.27
11 9 0.24
12 13 0.35
13 5 0.14
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (11 bp):
ATATTAAATTT
Found at i:164595313 original size:15 final size:15
Alignment explanation
Indices: 164595293--164595324 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
164595283 CCTTGATTCC
164595293 TTTGAGTTAAATCCG
1 TTTGAGTTAAATCCG
164595308 TTTGAGTTAAATCCG
1 TTTGAGTTAAATCCG
164595323 TT
1 TT
164595325 CACTCAATGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (15 bp):
TTTGAGTTAAATCCG
Found at i:164599683 original size:24 final size:24
Alignment explanation
Indices: 164599656--164599702 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
164599646 AATATAAATA
164599656 GTTTGGATTATTTAATAGATAATT
1 GTTTGGATTATTTAATAGATAATT
164599680 GTTTGGATTATTTAATAGATAAT
1 GTTTGGATTATTTAATAGATAAT
164599703 CACAATCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (24 bp):
GTTTGGATTATTTAATAGATAATT
Found at i:164605951 original size:36 final size:36
Alignment explanation
Indices: 164605904--164605975 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
164605894 CTTAAGTATG
164605904 ATCTTTGACTACATTCACCATTCCGTCAAACACTAT
1 ATCTTTGACTACATTCACCATTCCGTCAAACACTAT
164605940 ATCTTTGACTACATTCACCATTCCGTCAAACACTAT
1 ATCTTTGACTACATTCACCATTCCGTCAAACACTAT
164605976 CGTCTCTCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.31, C:0.31, G:0.06, T:0.33
Consensus pattern (36 bp):
ATCTTTGACTACATTCACCATTCCGTCAAACACTAT
Found at i:164607561 original size:14 final size:14
Alignment explanation
Indices: 164607539--164607570 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
164607529 AATTGTTCCA
*
164607539 GTTATTTAATCTTT
1 GTTACTTAATCTTT
164607553 GTTACTTAATCTTT
1 GTTACTTAATCTTT
164607567 GTTA
1 GTTA
164607571 TGATTAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.22, C:0.09, G:0.09, T:0.59
Consensus pattern (14 bp):
GTTACTTAATCTTT
Found at i:164614561 original size:40 final size:40
Alignment explanation
Indices: 164614506--164614733 Score: 356
Period size: 40 Copynumber: 5.8 Consensus size: 40
164614496 CGGATGATAA
164614506 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
164614546 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
164614586 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* * *
164614626 CC-GGCTAAGTCCCG-AGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* * *
164614664 CCGGGCTAAGTCCC-AAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* *
164614703 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
164614734 AGCTATATCC
Statistics
Matches: 177, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
38 23 0.13
39 66 0.37
40 88 0.50
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
Found at i:164614671 original size:39 final size:40
Alignment explanation
Indices: 164614506--164614759 Score: 349
Period size: 40 Copynumber: 6.5 Consensus size: 40
164614496 CGGATGATAA
*
164614506 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
164614546 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
164614586 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
164614626 CC-GGCTAAGTCCCG-AGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
164614664 CCGGGCTAAGTCCC-AAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
164614703 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACAT
* *
164614742 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
164614760 TACTTGGCTT
Statistics
Matches: 199, Mismatches: 11, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
38 38 0.19
39 73 0.37
40 88 0.44
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:164614710 original size:78 final size:79
Alignment explanation
Indices: 164614506--164614759 Score: 365
Period size: 78 Copynumber: 3.2 Consensus size: 79
164614496 CGGATGATAA
164614506 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
* *
164614571 TGCGAGTTATTACAT
66 TGCGAG-TACTATAT
164614586 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCC-GGCTAAGTCCCG-AGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
164614649 TGCGAGCTACTATAT
66 TGCGAG-TACTATAT
* * * *
164614664 CCGGGCTAAGTCCC-AAGGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCA-TTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
*
164614727 AGCGAGTAGCTATAT
66 TGCGAGTA-CTATAT
* *
164614742 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
164614760 TACTTGGCTT
Statistics
Matches: 160, Mismatches: 10, Indels: 10
0.89 0.06 0.06
Matches are distributed among these distances:
77 35 0.22
78 66 0.41
79 17 0.11
80 42 0.26
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTACTATAT
Found at i:164634941 original size:46 final size:45
Alignment explanation
Indices: 164634891--164635058 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 45
164634881 TGGTTGAGCA
164634891 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATG-GAATG
* * * *
164634937 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGGAA-T--G
*
164634982 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATG-GAATG
* *
164635030 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
164635059 GCTTATGGGC
Statistics
Matches: 102, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 55 0.54
47 28 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGGAATG
Found at i:164635047 original size:93 final size:93
Alignment explanation
Indices: 164634888--164635059 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
164634878 GGATGGTTGA
* *
164634888 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAGT
*
164634953 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
164634981 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAGT
164635046 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
164635060 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:164637175 original size:17 final size:17
Alignment explanation
Indices: 164637155--164637192 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
164637145 TTTCATTAAG
164637155 TTTTTAAGATTCAATTA
1 TTTTTAAGATTCAATTA
* *
164637172 TTTTTAGGATTCAATTG
1 TTTTTAAGATTCAATTA
164637189 TTTT
1 TTTT
164637193 CCTTTTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.11, T:0.58
Consensus pattern (17 bp):
TTTTTAAGATTCAATTA
Found at i:164649244 original size:20 final size:20
Alignment explanation
Indices: 164649219--164649264 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
164649209 GTGCAGCTTG
*
164649219 CACATGGGCGTGTAGACCAC
1 CACATGGGCATGTAGACCAC
*
164649239 CACATGGGCATGTAGACCTC
1 CACATGGGCATGTAGACCAC
164649259 CACATG
1 CACATG
164649265 ATCTAGGCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.17
Consensus pattern (20 bp):
CACATGGGCATGTAGACCAC
Found at i:164651561 original size:45 final size:45
Alignment explanation
Indices: 164651474--164651600 Score: 148
Period size: 45 Copynumber: 2.8 Consensus size: 45
164651464 TTATTCCTGA
* * * *
164651474 CATGATGCTATAGAGTCTTTCAACTATGGTCTTACAT-GTTTGAAT
1 CATGATGCAATAGTGTCTTTCAGCTATGGTCTTAC-TCATTTGAAT
* * *
164651519 CGTGATGCCATAGTGTCTTTCAGCTATGGTCTTACTCATTTGATT
1 CATGATGCAATAGTGTCTTTCAGCTATGGTCTTACTCATTTGAAT
* * *
164651564 CACGATGCAATAATGTCTTTTAGCTATGGTCTTACTC
1 CATGATGCAATAGTGTCTTTCAGCTATGGTCTTACTC
164651601 GTTTTTCAAC
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
44 1 0.01
45 69 0.99
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (45 bp):
CATGATGCAATAGTGTCTTTCAGCTATGGTCTTACTCATTTGAAT
Found at i:164657267 original size:40 final size:40
Alignment explanation
Indices: 164657182--164657332 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
164657172 AATTGAATGA
* * *
164657182 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
164657222 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
164657263 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
164657302 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
164657333 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:164657346 original size:40 final size:40
Alignment explanation
Indices: 164657218--164657348 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
164657208 TATGCTGGAA
* * *
164657218 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
164657258 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
164657298 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
164657338 ATTATATCCGG
1 ATTATATCCGG
164657349 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:164665212 original size:40 final size:39
Alignment explanation
Indices: 164665146--164665310 Score: 147
Period size: 40 Copynumber: 4.2 Consensus size: 39
164665136 AAATTGAATG
* *
164665146 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
* * * **
164665185 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
* *
164665225 ACATCCGGGCTAAGACCCGAAGGC-ATTCG-TGCGAGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTTGCTG-GAGATT
* * ** *
164665263 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
164665303 ATATCCGG
1 ATATCCGG
164665311 TTATATTCCG
Statistics
Matches: 98, Mismatches: 23, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
37 1 0.01
38 26 0.27
39 18 0.18
40 53 0.54
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTTGCTGGAGATT
Found at i:164665278 original size:38 final size:38
Alignment explanation
Indices: 164665147--164665294 Score: 149
Period size: 40 Copynumber: 3.8 Consensus size: 38
164665137 AATTGAATGA
* * * *
164665147 TATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGATTC
* * *
164665186 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-TC
164665224 TACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATTC
1 T--ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATTC
*
164665264 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
164665295 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
37 1 0.01
38 28 0.31
39 17 0.19
40 44 0.48
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATTC
Found at i:164665309 original size:78 final size:78
Alignment explanation
Indices: 164665146--164665310 Score: 192
Period size: 78 Copynumber: 2.1 Consensus size: 78
164665136 AAATTGAATG
*
164665146 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
164665211 TTGTGCTAGTGGCT
65 TTGTGCTAGTGACT
* * * * *
164665225 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCA
* *
164665288 TTTGTGC-ACGTGATT
64 ATTGTGCTA-GTGACT
164665303 ATATCCGG
1 ATATCCGG
164665311 TTATATTCCG
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
77 1 0.01
78 45 0.62
79 16 0.22
80 11 0.15
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGACT
Found at i:164669473 original size:25 final size:25
Alignment explanation
Indices: 164669444--164669491 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
164669434 TTATAATATG
* * *
164669444 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
164669469 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
164669492 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:164669685 original size:23 final size:24
Alignment explanation
Indices: 164669630--164669748 Score: 181
Period size: 24 Copynumber: 5.0 Consensus size: 24
164669620 GAGGAAGTGC
164669630 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
164669654 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
164669678 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
164669701 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
164669725 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
164669749 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 1, Indels: 9
0.90 0.01 0.09
Matches are distributed among these distances:
23 29 0.33
24 43 0.48
25 17 0.19
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:164669700 original size:47 final size:47
Alignment explanation
Indices: 164669631--164669727 Score: 178
Period size: 47 Copynumber: 2.1 Consensus size: 47
164669621 AGGAAGTGCA
164669631 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATT
164669678 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
164669725 AAA
1 AAA
164669728 AGAGGCTAGG
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
47 39 0.80
48 10 0.20
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
Found at i:164677466 original size:25 final size:25
Alignment explanation
Indices: 164677437--164677484 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
164677427 TTATAATATG
* *
164677437 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
164677462 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
164677485 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:164677623 original size:24 final size:24
Alignment explanation
Indices: 164677596--164677715 Score: 149
Period size: 24 Copynumber: 5.0 Consensus size: 24
164677586 GGAGAAAGTG
164677596 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
164677620 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
164677644 -TAAAGGGCTTATGCCCCAGTTATT
1 CAAAAGGGCTTATGCCCCAGTTA-T
*
164677668 AAAAAGGGCTT-TGCCCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
*
164677690 CTAAAAGAGGC-TAGGCCTCCAGTTAT
1 C-AAAAG-GGCTTATGCC-CCAGTTAT
164677716 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
23 27 0.32
24 42 0.49
25 16 0.19
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:164677683 original size:47 final size:47
Alignment explanation
Indices: 164677598--164677716 Score: 161
Period size: 47 Copynumber: 2.5 Consensus size: 47
164677588 AGAAAGTGCA
* *
164677598 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTACT
164677645 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTACT
1 AAAGGGCTTATGCCCCAGTTA-TAAAAAGGGCTTATGCCCCAGTTACT
*
164677692 AAAAGAGGC-TAGGCCTCCAGTTATA
1 -AAAG-GGCTTATGCC-CCAGTTATA
164677717 TGATAAAGCA
Statistics
Matches: 65, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
47 33 0.51
48 22 0.34
49 10 0.15
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTACT
Found at i:164677943 original size:31 final size:31
Alignment explanation
Indices: 164677908--164677971 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
164677898 CGTTTACAGT
164677908 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
164677939 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
164677970 AA
1 AA
164677972 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:164686874 original size:49 final size:49
Alignment explanation
Indices: 164686655--164687020 Score: 538
Period size: 49 Copynumber: 7.7 Consensus size: 49
164686645 CCCTTCGGGA
* * * *
164686655 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCA-GC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
* * *
164686702 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
164686749 CTTATCAC----ATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
164686794 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
164686841 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
164686890 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
164686939 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
164686988 CTTATCTCATATATATACACATTCACATTCATC
1 CTTATCACATATATATACACTTTCACATTCATC
164687021 GCATAAAATC
Statistics
Matches: 299, Mismatches: 13, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
45 42 0.14
46 2 0.01
47 89 0.30
49 166 0.56
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:164692066 original size:19 final size:19
Alignment explanation
Indices: 164692029--164692066 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
164692019 ACCTGTTAGA
*
164692029 AGAAAAAAAATGAAGAATT
1 AGAAAAAAAATGAAAAATT
164692048 AGAAAAGAAAAT-AAAAATT
1 AGAAAA-AAAATGAAAAATT
164692067 TAATTTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.71, C:0.00, G:0.13, T:0.16
Consensus pattern (19 bp):
AGAAAAAAAATGAAAAATT
Found at i:164700306 original size:93 final size:93
Alignment explanation
Indices: 164700194--164700365 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
164700184 GCCCATAAGT
* **
164700194 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACCCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
164700259 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
164700287 GAACTCGGACTCAACTCAACGAGTTCGGACCCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACCCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
164700352 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
164700366 CAAATATCCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACCCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:164700361 original size:46 final size:46
Alignment explanation
Indices: 164700186--164700361 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
164700176 TGTAACCCGC
* * **
164700186 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCCTCGCAT
* *
164700232 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-CCCTCG---CAT
* *
164700282 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACCCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCCTCGCAT
164700325 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
164700362 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 31 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCCTCGCAT
Found at i:164700380 original size:46 final size:46
Alignment explanation
Indices: 164700237--164700380 Score: 150
Period size: 46 Copynumber: 3.1 Consensus size: 46
164700227 CGCATCCATA
* * *
164700237 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--AACATCCC
* *** *
164700285 A-CGAACTCGGACTCAACTCAACGAGTTCGGA--CCCTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCC--C
*
164700330 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCC
164700376 AGTGA
1 AGTGA
164700381 CATGTCACTT
Statistics
Matches: 78, Mismatches: 13, Indels: 12
0.76 0.13 0.12
Matches are distributed among these distances:
43 4 0.05
45 3 0.04
46 34 0.44
47 29 0.37
48 8 0.10
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCC
Found at i:164701493 original size:40 final size:40
Alignment explanation
Indices: 164701353--164701493 Score: 135
Period size: 40 Copynumber: 3.5 Consensus size: 40
164701343 GGATATTACA
* *
164701353 TTCGGGTCTTAGCCCGGATAGAA-TGACTC-GCACGAA-TGCC
1 TTCGGGTCTTAGCCCGGATATAACCG-C-CAGCAC-AATTGCC
* *
164701393 TTCGGGTCTTAGCCCGGATATAGCCGCTAGCACAATTGCC
1 TTCGGGTCTTAGCCCGGATATAACCGCCAGCACAATTGCC
* *** * *
164701433 TTCGGGTCTTAACCCGGATATAATTTCCAGCATAATTGTC
1 TTCGGGTCTTAGCCCGGATATAACCGCCAGCACAATTGCC
*
164701473 TTCGGGGCTTAGCCCGGATAT
1 TTCGGGTCTTAGCCCGGATAT
164701494 CATTCAATTT
Statistics
Matches: 84, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
39 2 0.02
40 81 0.96
41 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.28
Consensus pattern (40 bp):
TTCGGGTCTTAGCCCGGATATAACCGCCAGCACAATTGCC
Found at i:164709445 original size:40 final size:39
Alignment explanation
Indices: 164709334--164709485 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
164709324 TATAACATGT
* ** *
164709334 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
164709374 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
164709414 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* * *
164709454 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
164709486 CATTCAATTT
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 93 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:164709468 original size:80 final size:80
Alignment explanation
Indices: 164709334--164709485 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
164709324 TATAACATGT
* *
164709334 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
164709399 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
164709414 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
164709477 CCCGGATAT
64 CCCGGATAT
164709486 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:164713171 original size:40 final size:40
Alignment explanation
Indices: 164713126--164713290 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
164713116 CGGAATATAA
164713126 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
164713166 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
164713206 CCGG--ATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
164713244 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
164713283 CCGGATAT
1 CCGGATAT
164713291 CATTCAATTT
Statistics
Matches: 103, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
38 30 0.29
39 14 0.14
40 59 0.57
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:164713247 original size:38 final size:37
Alignment explanation
Indices: 164713142--164713250 Score: 128
Period size: 38 Copynumber: 2.8 Consensus size: 37
164713132 ATAATCACGT
* *
164713142 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT--AACAACTA
* *
164713182 GCACGAATGCCTTCGGGCCTTAGCCCGGATAACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAACAACTA
*
164713220 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
164713251 TAATTTCCAG
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
37 2 0.03
38 31 0.51
40 28 0.46
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (37 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAACAACTA
Found at i:164713274 original size:78 final size:77
Alignment explanation
Indices: 164713142--164713289 Score: 192
Period size: 78 Copynumber: 1.9 Consensus size: 77
164713132 ATAATCACGT
*
164713142 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
164713207 CGGATAACCACTA
65 CGGATAACCACTA
* * ** * *
164713220 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
164713283 CCGGATA
64 CCGGATA
164713290 TCATTCAATT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
77 16 0.26
78 45 0.74
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (77 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATAACCACTA
Found at i:164714139 original size:17 final size:19
Alignment explanation
Indices: 164714116--164714161 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
164714106 AAGAAGCATG
164714116 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
164714134 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
164714152 AATCATGCTC
1 AATCATGCTC
164714162 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:164721169 original size:40 final size:40
Alignment explanation
Indices: 164721124--164721290 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
164721114 CGGAATATAA
164721124 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
164721164 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
164721204 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
164721244 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
164721283 CCGGATAT
1 CCGGATAT
164721291 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:164721274 original size:80 final size:79
Alignment explanation
Indices: 164721124--164721290 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
164721114 CGGAATATAA
* *
164721124 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
164721189 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
164721204 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
164721266 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
164721283 CCGGATAT
1 CCGGATAT
164721291 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:164722138 original size:17 final size:19
Alignment explanation
Indices: 164722115--164722160 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
164722105 AAGAAGCATG
164722115 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
164722133 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
164722151 AATCATGCTC
1 AATCATGCTC
164722161 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:164733248 original size:40 final size:40
Alignment explanation
Indices: 164733169--164733372 Score: 308
Period size: 40 Copynumber: 5.2 Consensus size: 40
164733159 AACCCAAGTA
* * * *
164733169 CCTTCGGAATTTAG-CCGGATATAG-CAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
164733208 CCTTCGGGACTTAGCCCGGACATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
164733248 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
164733288 CCTTCGGGAC-TAGCCC-GATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
164733326 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
164733366 CCTTCGG
1 CCTTCGG
164733373 ATCTTAGTCC
Statistics
Matches: 154, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
38 31 0.20
39 24 0.16
40 98 0.64
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:164733335 original size:78 final size:80
Alignment explanation
Indices: 164733169--164733372 Score: 308
Period size: 78 Copynumber: 2.6 Consensus size: 80
164733159 AACCCAAGTA
* * * *
164733169 CCTTCGGAATTTAG-CCGGATATAG-CAACTCGCACGAATGCCTTCGGGACTTAGCCCGGACATA
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGACATA
*
164733232 GTCACTAGCACAAATG
65 ATCACTAGCACAAATG
*
164733248 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC-TAGCCC-GATATAA
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGACATAA
164733311 TCACTAGCACAAATG
66 TCACTAGCACAAATG
*
164733326 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGG
164733373 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
78 66 0.57
79 18 0.16
80 31 0.27
81 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGACATAA
TCACTAGCACAAATG
Found at i:164739518 original size:20 final size:20
Alignment explanation
Indices: 164739493--164739532 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
164739483 CATCACGCTA
164739493 TAAAAAGCCTGTCTAGCTTC
1 TAAAAAGCCTGTCTAGCTTC
164739513 TAAAAAGCCTGTCTAGCTTC
1 TAAAAAGCCTGTCTAGCTTC
164739533 ATCATTCTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (20 bp):
TAAAAAGCCTGTCTAGCTTC
Found at i:164741211 original size:40 final size:40
Alignment explanation
Indices: 164741132--164741297 Score: 255
Period size: 40 Copynumber: 4.2 Consensus size: 40
164741122 AACCCAAGTA
* * * *
164741132 CCTTCGGAATTTAG-CCGGATATAG-CAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
164741171 CCTTCGGGACTTAGCCCGGACATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
164741211 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
164741251 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
164741291 CCTTCGG
1 CCTTCGG
164741298 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
39 12 0.10
40 105 0.89
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:164753164 original size:46 final size:46
Alignment explanation
Indices: 164753114--164753289 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
164753104 TGGTTGAGCA
164753114 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
164753160 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
164753205 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
164753253 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
164753290 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:164753270 original size:93 final size:93
Alignment explanation
Indices: 164753111--164753282 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
164753101 GGATGGTTGA
* *
164753111 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
164753176 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
164753204 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
164753269 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
164753283 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:164763843 original size:29 final size:29
Alignment explanation
Indices: 164763811--164763883 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
164763801 CTTCGAGCTC
*
164763811 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
164763840 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
164763869 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
164763884 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:164768834 original size:29 final size:28
Alignment explanation
Indices: 164768802--164768904 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
164768792 GTGACGAGAT
* *
164768802 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
164768831 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
164768860 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
164768889 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
164768905 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:164771056 original size:19 final size:19
Alignment explanation
Indices: 164771032--164771072 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
164771022 TTAAATTGTT
*
164771032 TTATAATATGAAATGAATA
1 TTATAATATGAAAGGAATA
*
164771051 TTATAATATTAAAGGAATA
1 TTATAATATGAAAGGAATA
164771070 TTA
1 TTA
164771073 ATATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (19 bp):
TTATAATATGAAAGGAATA
Found at i:164773135 original size:39 final size:38
Alignment explanation
Indices: 164773057--164773228 Score: 281
Period size: 39 Copynumber: 4.5 Consensus size: 38
164773047 GTATATGATT
*
164773057 TGGTGTTATATCCGGGCTAAGCCCGAAGGCATTCATGC
1 TGGTGTTATATCCGGGCTAAGCCCGAAGGCATTCGTGC
*
164773095 TGGTGTTATAACCGGGCTAAGCCACGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCC-CGAAGGCATTCGTGC
164773134 TGGTGTTATATCCGGGCTAAGCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCGAAGGCATTCGTGC
*
164773172 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTTGTGC
1 TGGTGTTATATCCGGGCTAAG-CCCGAAGGCATTCGTGC
* *
164773211 TGGTATTATATTCGGGCT
1 TGGTGTTATATCCGGGCT
164773229 TAAAGTCCCG
Statistics
Matches: 126, Mismatches: 6, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
38 58 0.46
39 68 0.54
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (38 bp):
TGGTGTTATATCCGGGCTAAGCCCGAAGGCATTCGTGC
Found at i:164773187 original size:77 final size:77
Alignment explanation
Indices: 164773057--164773228 Score: 290
Period size: 77 Copynumber: 2.2 Consensus size: 77
164773047 GTATATGATT
164773057 TGGTGTTATATCCGGGCTAAGCCCGAAGGCATTCATGCTGGTGTTATAACCGGGCTAAGCCACGA
1 TGGTGTTATATCCGGGCTAAGCCCGAAGGCATTCATGCTGGTGTTATAACCGGGCTAAGCCACGA
164773122 AGGCATTCGTGC
66 AGGCATTCGTGC
* * *
164773134 TGGTGTTATATCCGGGCTAAGCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGA
1 TGGTGTTATATCCGGGCTAAGCCCGAAGGCATTCATGCTGGTGTTATAACCGGGCTAAGCCACGA
*
164773199 AGGCATTTGTGC
66 AGGCATTCGTGC
* *
164773211 TGGTATTATATTCGGGCT
1 TGGTGTTATATCCGGGCT
164773229 TAAAGTCCCG
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
77 89 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (77 bp):
TGGTGTTATATCCGGGCTAAGCCCGAAGGCATTCATGCTGGTGTTATAACCGGGCTAAGCCACGA
AGGCATTCGTGC
Found at i:164775470 original size:94 final size:94
Alignment explanation
Indices: 164775322--164775518 Score: 304
Period size: 94 Copynumber: 2.1 Consensus size: 94
164775312 CCCATACCCT
* *
164775322 TGAAGTTGCAGTGGGACGGATTGAAGTTATTATGGCAAATCTTATTTCCCTGAAGTTGTAATGGA
1 TGAAGTTGCAGTAGGACGGATTGAAGTTATTATGGCAAATCTTATCTCCCTGAAGTTGTAATGGA
*
164775387 GTAGATTAAAGCCACAAACCTTATCTTCC
66 GTAGATTAAAGCCACAAACCTTATCTCCC
* ** *
164775416 TGAAGTTGCAGTAGGACGGATTGAAGTTATTATGGCGAATCTTATCTCTTTGAAGTTGTAGTGGA
1 TGAAGTTGCAGTAGGACGGATTGAAGTTATTATGGCAAATCTTATCTCCCTGAAGTTGTAATGGA
* * *
164775481 GTAGATTAAAGCTACAGATCTTATCTCCC
66 GTAGATTAAAGCCACAAACCTTATCTCCC
164775510 TGAAGTTGC
1 TGAAGTTGC
164775519 TGTGGAGTAG
Statistics
Matches: 93, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
94 93 1.00
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (94 bp):
TGAAGTTGCAGTAGGACGGATTGAAGTTATTATGGCAAATCTTATCTCCCTGAAGTTGTAATGGA
GTAGATTAAAGCCACAAACCTTATCTCCC
Found at i:164775517 original size:44 final size:44
Alignment explanation
Indices: 164775360--164775795 Score: 194
Period size: 44 Copynumber: 9.5 Consensus size: 44
164775350 ATTATGGCAA
* * * * * *
164775360 ATCTTATTTCCCTGAAGTTGTAATGGAGTAGATTAAAGCCACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAG
* * * * * *
164775404 ACCTTATCTTCCTGAAGTTGCAGTAGGA-CGGATTGAAGTTATTATGGCG
1 ATCTTATCTCCCTGAAGTTGCAGT-GGAGCAGATTAAAGCTA-CA----G
** * *
164775453 AATCTTATCTCTTTGAAGTTGTAGTGGAGTAGATTAAAGCTACAG
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAG
* * * * *
164775498 ATCTTATCTCCCTGAAGTTGCTGTGGAGTAGATCGAAA-ATCACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-TAAAGCT-ACAG
* * * * * *
164775543 ACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAGCCACCAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CAG
* * * * *
164775588 -TCTTATCTCCTTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CAG
* * * * * *
164775632 ATCTTATTTCACTAAAGTTGCAGTCGAACAGATCAAAGCTACGAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC-AG
* * * * * * *
164775677 TTATAAATCTTATGTCGCTGAAGTTGAAGTGGAGTAGATTGAAGATAACAA
1 ------ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCT-ACAG
** * * * *
164775728 ATCTTATCTCTTTGAAGTTGCAATAGAGCAGATTAAAGCTATAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAG
* **
164775772 ACCTTATCTTGCTGAAGTTGCAGT
1 ATCTTATCTCCCTGAAGTTGCAGT
164775796 AAAGCGGTGG
Statistics
Matches: 287, Mismatches: 84, Indels: 42
0.69 0.20 0.10
Matches are distributed among these distances:
44 119 0.41
45 103 0.36
49 4 0.01
50 28 0.10
51 31 0.11
52 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAG
Found at i:164775638 original size:89 final size:89
Alignment explanation
Indices: 164775357--164775796 Score: 249
Period size: 89 Copynumber: 4.8 Consensus size: 89
164775347 GTTATTATGG
* * * * * * * * *
164775357 CAAATCTTATTTCCCTGAAGTTGTAATGGAGTAGATTAAAGCCACAAACCTTATCTTCCTGAAGT
1 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCACAGATCTTATCTCCCTGAAGT
* * **
164775422 TGCAGTAG-GACGGATTGAAGTTATTATGG
66 TGCAGTAGAG-CAGATCGAA---A--ATCA
* * * * * *
164775451 CGAATCTTATCTCTTTGAAGTTGTAGTGGAGTAGATTAAAGCTACAGATCTTATCTCCCTGAAGT
1 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCACAGATCTTATCTCCCTGAAGT
* * *
164775516 TGCTGTGGAGTAGATCGAAAATCA
66 TGCAGTAGAGCAGATCGAAAATCA
* * * *
164775540 CAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAGCCACCAG-TCTTATCTCCTTGAAG
1 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCA-CAGATCTTATCTCCCTGAAG
*
164775604 TTGCAGTAGAGCAGA-CTGAAGAT-A
65 TTGCAGTAGAGCAGATC-GAAAATCA
* * * * * * * * *
164775628 GCAGATCTTATTTCACTAAAGTTGCAGTCGAACAGATCAAAGCTACGAGTTATAAATCTTATGTC
1 -CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCAC-AG------ATCTTATCTC
* * * * * * *
164775693 GCTGAAGTTGAAGTGGAGTAGATTGAAGATAA
58 CCTGAAGTTGCAGTAGAGCAGATCGAAAATCA
* * * * * * **
164775725 CAAATCTTATCTCTTTGAAGTTGCAATAGAGCAGATTAAAGCTATAAACCTTATCTTGCTGAAGT
1 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCACAGATCTTATCTCCCTGAAGT
164775790 TGCAGTA
66 TGCAGTA
164775797 AAGCGGTGGA
Statistics
Matches: 268, Mismatches: 64, Indels: 33
0.73 0.18 0.09
Matches are distributed among these distances:
88 3 0.01
89 124 0.46
90 3 0.01
91 1 0.00
94 68 0.25
95 2 0.01
96 66 0.25
97 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (89 bp):
CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCACAGATCTTATCTCCCTGAAGT
TGCAGTAGAGCAGATCGAAAATCA
Found at i:164776932 original size:19 final size:18
Alignment explanation
Indices: 164776898--164776935 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
164776888 TCTTATCACT
*
164776898 TTTATTATTGTTATTTTA
1 TTTATTATTATTATTTTA
164776916 TTTATTATTTATTATTTTA
1 TTTATTA-TTATTATTTTA
164776935 T
1 T
164776936 ATCTTTTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (18 bp):
TTTATTATTATTATTTTA
Found at i:164776977 original size:9 final size:9
Alignment explanation
Indices: 164776963--164777015 Score: 54
Period size: 9 Copynumber: 6.0 Consensus size: 9
164776953 CAAATTTTAG
164776963 ATTATTTTT
1 ATTATTTTT
164776972 ATTATTTTT
1 ATTATTTTT
* *
164776981 ACTATTATT
1 ATTATTTTT
* *
164776990 ATCATTATT
1 ATTATTTTT
*
164776999 -TTATGTTT
1 ATTATTTTT
164777007 ATTATTTTT
1 ATTATTTTT
164777016 TACCTAAATT
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
8 5 0.14
9 30 0.86
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.70
Consensus pattern (9 bp):
ATTATTTTT
Found at i:164777135 original size:6 final size:6
Alignment explanation
Indices: 164777126--164777183 Score: 64
Period size: 6 Copynumber: 9.5 Consensus size: 6
164777116 TTTATTTCAT
* * *
164777126 TTTTTA TTTTCA TTTTTTA TTTTTA TTTTT- TATTTTA CTATTA TTTTTA
1 TTTTTA TTTTTA -TTTTTA TTTTTA TTTTTA T-TTTTA TTTTTA TTTTTA
164777175 TTTTTA TTT
1 TTTTTA TTT
164777184 CATTTTTACT
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
5 1 0.02
6 37 0.86
7 5 0.12
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:164777138 original size:13 final size:13
Alignment explanation
Indices: 164777115--164777190 Score: 81
Period size: 13 Copynumber: 6.2 Consensus size: 13
164777105 CTCATTACCA
164777115 TTTTA-TTTCATT
1 TTTTATTTTCATT
164777127 TTTTATTTTCATT
1 TTTTATTTTCATT
*
164777140 TTTTATTTTTATT
1 TTTTATTTTCATT
*
164777153 TTTTATTTT-A-C
1 TTTTATTTTCATT
* *
164777164 TATTATTTTTA-T
1 TTTTATTTTCATT
164777176 TTTTA-TTTCATT
1 TTTTATTTTCATT
164777188 TTT
1 TTT
164777191 ACTTAATATT
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
11 12 0.22
12 15 0.27
13 28 0.51
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTATTTTCATT
Found at i:164777142 original size:7 final size:7
Alignment explanation
Indices: 164777124--164777183 Score: 54
Period size: 7 Copynumber: 8.6 Consensus size: 7
164777114 ATTTTATTTC
164777124 ATTTTTT
1 ATTTTTT
*
164777131 A-TTTTC
1 ATTTTTT
164777137 ATTTTTT
1 ATTTTTT
164777144 A-TTTTT
1 ATTTTTT
164777150 ATTTTTT
1 ATTTTTT
*
164777157 ATTTTACT
1 ATTTT-TT
164777165 ATTATTTT
1 ATT-TTTT
164777173 -TATTTTT
1 AT-TTTTT
164777180 ATTT
1 ATTT
164777184 CATTTTTACT
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
6 11 0.26
7 23 0.53
8 7 0.16
9 2 0.05
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.78
Consensus pattern (7 bp):
ATTTTTT
Found at i:164779981 original size:32 final size:32
Alignment explanation
Indices: 164779944--164780009 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
164779934 TAATTGATAA
*
164779944 TAAAAAATTAATTTTTAAAT-TAAAATAAATTT
1 TAAAAAATTAATTTATAAATATAAAAT-AATTT
* *
164779976 TAAAAACTTTATTTATAAATATAAAATAATTT
1 TAAAAAATTAATTTATAAATATAAAATAATTT
164780008 TA
1 TA
164780010 GATACAATGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
32 24 0.80
33 6 0.20
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (32 bp):
TAAAAAATTAATTTATAAATATAAAATAATTT
Found at i:164780638 original size:19 final size:19
Alignment explanation
Indices: 164780582--164780639 Score: 50
Period size: 17 Copynumber: 3.2 Consensus size: 19
164780572 AATTATTTTC
* *
164780582 AAAATTATAA-AAGTTATT
1 AAAATAATAATAAATTATT
* * *
164780600 AAAA-AAT-TTAAATAACT
1 AAAATAATAATAAATTATT
164780617 AAAATAATAATAAATTATT
1 AAAATAATAATAAATTATT
164780636 AAAA
1 AAAA
164780640 AATTCAAAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 5
0.69 0.19 0.12
Matches are distributed among these distances:
17 11 0.38
18 7 0.24
19 11 0.38
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAATAATAATAAATTATT
Found at i:164780641 original size:36 final size:34
Alignment explanation
Indices: 164780582--164780660 Score: 95
Period size: 36 Copynumber: 2.2 Consensus size: 34
164780572 AATTATTTTC
* * * *
164780582 AAAATTATAAAAGTTATTAAAAAATTTAAATAACT
1 AAAATAATAAAAATTATTAAAAAATTCAAA-AAAT
164780617 AAAATAATAATAAATTATTAAAAAATTCAAAAAAT
1 AAAATAATAA-AAATTATTAAAAAATTCAAAAAAT
164780652 ATAAATAAT
1 A-AAATAAT
164780661 TCTTTCTAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
35 13 0.34
36 25 0.66
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.32
Consensus pattern (34 bp):
AAAATAATAAAAATTATTAAAAAATTCAAAAAAT
Found at i:164784012 original size:18 final size:18
Alignment explanation
Indices: 164783989--164784030 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
164783979 ATTCAGTGTA
*
164783989 ATAAAAGCATGGTTAGTG
1 ATAAAAGCATGGTGAGTG
164784007 ATAAAAGCATGGTGAGTG
1 ATAAAAGCATGGTGAGTG
164784025 A-AAAAG
1 ATAAAAG
164784031 TGAAAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.45, C:0.05, G:0.29, T:0.21
Consensus pattern (18 bp):
ATAAAAGCATGGTGAGTG
Found at i:164790725 original size:40 final size:39
Alignment explanation
Indices: 164790598--164790743 Score: 107
Period size: 40 Copynumber: 3.7 Consensus size: 39
164790588 GAGAAATTGA
* * *
164790598 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATC
* * * * * *
164790639 T-ATAACCGGGTTAAGACCTGAAGGCATTCGTGCGAGTC
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC
**
164790677 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC
* * *
164790717 GTGATATCCGGGTTAAGTCCCGTAGGC
1 -TGATATCCGGGCTAAGACCCGAAGGC
164790744 CTTGGTGCGG
Statistics
Matches: 80, Mismatches: 22, Indels: 7
0.73 0.20 0.06
Matches are distributed among these distances:
37 4 0.05
38 1 0.01
39 4 0.05
40 70 0.88
41 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC
Found at i:164790752 original size:80 final size:80
Alignment explanation
Indices: 164790601--164790752 Score: 175
Period size: 80 Copynumber: 1.9 Consensus size: 80
164790591 AAATTGATGA
* * *
164790601 TATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATAACCGGGTTAAGACCTGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGACAATTATGCTGCAAATTATAACCGGGTTAAGACCCGAAGGCAT
164790666 TCGTGCGAGTCATTC
66 TCGTGCGAGTCATTC
* * * *
164790681 TATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGTGATATCCGGGTTAAGTCCCGTAGG
1 TATCCGGGCTAAGACCCGAAGACAATTATGCTGCAAAT--T-ATAACCGGGTTAAGACCCGAAGG
* *
164790743 CCTTGGTGCG
63 CATTCGTGCG
164790753 GGTTACCATA
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
77 6 0.10
78 2 0.03
79 4 0.07
80 48 0.80
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGACAATTATGCTGCAAATTATAACCGGGTTAAGACCCGAAGGCAT
TCGTGCGAGTCATTC
Found at i:164798758 original size:40 final size:40
Alignment explanation
Indices: 164798714--164798822 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
164798704 GAAATTATAA
* **
164798714 CCGGGTTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
1 CCGGGTTAAGACCCGAAGGCATTCGTGCGAATCATGATAT
* * * *
164798754 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGATAT
1 CCGGGTTAAGACCCGAAGGCATTCGTGCGAATCATGATAT
* * * *
164798794 CCGGGTTAAGTCCCGTAGGCCTTGGTGCG
1 CCGGGTTAAGACCCGAAGGCATTCGTGCG
164798823 GGTTACCATA
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTCGTGCGAATCATGATAT
Found at i:164798822 original size:80 final size:80
Alignment explanation
Indices: 164798671--164798822 Score: 184
Period size: 80 Copynumber: 1.9 Consensus size: 80
164798661 AATTGAATGA
* *
164798671 TATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATAACCGGGTTAAGACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGACAATTATGCTGCAAATTATAACCGGGTTAAGACCCGAAGGCAT
164798736 TCGTGCGAGTCATTC
66 TCGTGCGAGTCATTC
* * * *
164798751 TATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGTGATATCCGGGTTAAGTCCCGTAGG
1 TATCCGGGCTAAGACCCGAAGACAATTATGCTGCAAAT--T-ATAACCGGGTTAAGACCCGAAGG
* *
164798813 CCTTGGTGCG
63 CATTCGTGCG
164798823 GGTTACCATA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
77 6 0.10
78 2 0.03
79 4 0.07
80 49 0.80
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGACAATTATGCTGCAAATTATAACCGGGTTAAGACCCGAAGGCAT
TCGTGCGAGTCATTC
Found at i:164806765 original size:80 final size:80
Alignment explanation
Indices: 164806681--164806829 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
164806671 TATGGTAACC
* * * *
164806681 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
164806745 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
164806761 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
164806826 CCGG
66 CCGG
164806830 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:164806771 original size:40 final size:38
Alignment explanation
Indices: 164806722--164806829 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
164806712 ATCACGATTT
*
164806722 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
164806762 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
164806802 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
164806830 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:164813218 original size:33 final size:33
Alignment explanation
Indices: 164813181--164813254 Score: 130
Period size: 33 Copynumber: 2.2 Consensus size: 33
164813171 TACTACTGTG
*
164813181 TAGGGCTAAAGCCCAGACTGCTCTGTTACTATA
1 TAGGGCTAAAGCCCAGACTGCTCTGTTACTAAA
164813214 TAGGGCTAAAGCCCAGACTGCTCTGTTACTAAA
1 TAGGGCTAAAGCCCAGACTGCTCTGTTACTAAA
*
164813247 TAAGGCTA
1 TAGGGCTA
164813255 CGGCTCAGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (33 bp):
TAGGGCTAAAGCCCAGACTGCTCTGTTACTAAA
Found at i:164821846 original size:28 final size:28
Alignment explanation
Indices: 164821814--164821868 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
164821804 GGTATATCGA
164821814 TAATTTTGCTCTTTAGGGGTAATTTCGG
1 TAATTTTGCTCTTTAGGGGTAATTTCGG
164821842 TAATTTTGCTCTTTAGGGGTAATTTCG
1 TAATTTTGCTCTTTAGGGGTAATTTCG
164821869 TGATCTACGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.18, C:0.11, G:0.24, T:0.47
Consensus pattern (28 bp):
TAATTTTGCTCTTTAGGGGTAATTTCGG
Found at i:164823390 original size:20 final size:20
Alignment explanation
Indices: 164823367--164823404 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
164823357 CACATCCAAA
*
164823367 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
164823387 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
164823405 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:164829688 original size:28 final size:28
Alignment explanation
Indices: 164829642--164829710 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
164829632 TTTAAAACCC
*
164829642 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
164829669 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
164829697 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
164829711 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:164831360 original size:20 final size:20
Alignment explanation
Indices: 164831337--164831374 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
164831327 CACATCCAAA
*
164831337 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
164831357 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
164831375 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:164837229 original size:40 final size:40
Alignment explanation
Indices: 164837184--164837350 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
164837174 CGGAATAAAA
164837184 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
164837224 CCGGATGGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
164837264 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
164837304 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
164837343 CCGGATAT
1 CCGGATAT
164837351 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:164841355 original size:40 final size:39
Alignment explanation
Indices: 164841190--164841373 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
164841180 AAATTGAATG
* * *
164841190 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
164841230 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
164841270 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
164841310 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
164841349 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
164841374 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:164841398 original size:80 final size:81
Alignment explanation
Indices: 164841230--164841418 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
164841220 GCTGGAAATT
* * * *
164841230 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
164841295 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
164841311 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
164841374 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
164841390 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
164841419 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:164849737 original size:15 final size:15
Alignment explanation
Indices: 164849713--164849747 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
164849703 AAGCATACCT
164849713 TATA-ATATTAGATA
1 TATATATATTAGATA
*
164849727 TATATATATTATATA
1 TATATATATTAGATA
164849742 TATATA
1 TATATA
164849748 ATAGTATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (15 bp):
TATATATATTAGATA
Found at i:164849815 original size:12 final size:11
Alignment explanation
Indices: 164849776--164849811 Score: 56
Period size: 12 Copynumber: 3.3 Consensus size: 11
164849766 ATGACTAATG
164849776 ATAT-TAAAAT
1 ATATATAAAAT
164849786 ATATATAATAAT
1 ATATATAA-AAT
164849798 ATATATAAAAT
1 ATATATAAAAT
164849809 ATA
1 ATA
164849812 ATATTAAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 4 0.17
11 9 0.38
12 11 0.46
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
ATATATAAAAT
Found at i:164850028 original size:13 final size:14
Alignment explanation
Indices: 164850010--164850040 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
164850000 ATGTACGAAT
164850010 ATATACATATA-TA
1 ATATACATATATTA
164850023 ATATACATATATTA
1 ATATACATATATTA
164850037 ATAT
1 ATAT
164850041 TAATAATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATACATATATTA
Found at i:164850140 original size:12 final size:12
Alignment explanation
Indices: 164850102--164850141 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
164850092 TGAAAATAAT
164850102 TAAT-ATATTAA
1 TAATAATATTAA
* *
164850113 TAAAAATACTAA
1 TAATAATATTAA
164850125 TAATAATATTAA
1 TAATAATATTAA
164850137 TAATA
1 TAATA
164850142 TGTAAAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
11 3 0.12
12 21 0.88
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (12 bp):
TAATAATATTAA
Found at i:164850626 original size:19 final size:20
Alignment explanation
Indices: 164850602--164850644 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
164850592 AGAAGGGGAA
164850602 GGAGAGAA-AGA-GGGAGCGG
1 GGAGAGAAGAGAGGGGAG-GG
164850621 GGAGAGAAGAGAGGGGAGGG
1 GGAGAGAAGAGAGGGGAGGG
164850641 GGAG
1 GGAG
164850645 CTCCGGCCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.36
20 9 0.41
21 5 0.23
ACGTcount: A:0.35, C:0.02, G:0.63, T:0.00
Consensus pattern (20 bp):
GGAGAGAAGAGAGGGGAGGG
Found at i:164855945 original size:93 final size:93
Alignment explanation
Indices: 164855830--164856001 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
164855820 GCCCATAAGT
** *
164855830 GAACTCGGACTCAACTCAACGAGCTCGGGTATTCGCATCCATAAGTGAACTCAGACTCAACTAAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCAGACTCAACTAAA
164855895 CGAGCTCAGATGCCTAGTTACATCTCTC
66 CGAGCTCAGATGCCTAGTTACATCTCTC
* * * * *
164855923 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCAGACTCAACTAAA
* *
164855988 CGAGTTCGGATGCC
66 CGAGCTCAGATGCC
164856002 CAAATTTCCC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCAGACTCAACTAAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:164855983 original size:46 final size:46
Alignment explanation
Indices: 164855822--164856000 Score: 198
Period size: 46 Copynumber: 3.9 Consensus size: 46
164855812 TGTAACCCGC
* ** *
164855822 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGTAT
* * * *
164855868 CCATAAGTGAACTCAGACTCAACTAAACGAGCTCAGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-CTCGTAT
* *** * *
164855914 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGTAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGCTCGTAT
*
164855961 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC
164856001 CCAAATTTCC
Statistics
Matches: 107, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
46 74 0.69
47 33 0.31
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGTAT
Found at i:164858550 original size:29 final size:29
Alignment explanation
Indices: 164858510--164858670 Score: 114
Period size: 29 Copynumber: 5.5 Consensus size: 29
164858500 TTATCGATCA
*
164858510 ATGAAAAAGGATGGTTTTCACCATCGATT
1 ATGAAAAGGGATGGTTTTCACCATCGATT
* * * **
164858539 ATTAAAAGGGATAGTTTTGAGTATCGATT
1 ATGAAAAGGGATGGTTTTCACCATCGATT
** *
164858568 ATGAAAAGGGATGG-TGACGACCATCG-TAA
1 ATGAAAAGGGATGGTTTTC-ACCATCGAT-T
* * *
164858597 ATGAAAAGGGATAG-TTTCGACTATCGACT
1 ATGAAAAGGGATGGTTTTC-ACCATCGATT
* **
164858626 ATGAAAAGGGAAGG-TGACGACCATCGATT
1 ATGAAAAGGGATGGTTTTC-ACCATCGATT
164858655 AATGAAAAGGGATGGT
1 -ATGAAAAGGGATGGT
164858671 GACGACCATC
Statistics
Matches: 100, Mismatches: 27, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
28 2 0.02
29 85 0.85
30 13 0.13
ACGTcount: A:0.37, C:0.11, G:0.27, T:0.25
Consensus pattern (29 bp):
ATGAAAAGGGATGGTTTTCACCATCGATT
Found at i:164858592 original size:58 final size:58
Alignment explanation
Indices: 164858529--164858667 Score: 199
Period size: 58 Copynumber: 2.4 Consensus size: 58
164858519 GATGGTTTTC
* * * * *
164858529 ACCATCGATTATTAAAAGGGATAGTTTTGAGTATCGATTATGAAAAGGGATGGTGACG
1 ACCATCGATTATGAAAAGGGATAGTTTCGACTATCGACTATGAAAAGGGAAGGTGACG
*
164858587 ACCATCG-TAAATGAAAAGGGATAGTTTCGACTATCGACTATGAAAAGGGAAGGTGACG
1 ACCATCGAT-TATGAAAAGGGATAGTTTCGACTATCGACTATGAAAAGGGAAGGTGACG
164858645 ACCATCGATTAATGAAAAGGGAT
1 ACCATCGATT-ATGAAAAGGGAT
164858668 GGTGACGACC
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
57 1 0.01
58 57 0.80
59 13 0.18
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.24
Consensus pattern (58 bp):
ACCATCGATTATGAAAAGGGATAGTTTCGACTATCGACTATGAAAAGGGAAGGTGACG
Found at i:164858689 original size:59 final size:58
Alignment explanation
Indices: 164858567--164858692 Score: 171
Period size: 59 Copynumber: 2.2 Consensus size: 58
164858557 GAGTATCGAT
* ** * * *
164858567 TATGAAAAGGGATGGTGACGACCATCGTAAATGAAAAGGGATAGTTTCGACTATCGAC
1 TATGAAAAGGGAAGGTGACGACCATCGTAAATGAAAAGGGATAGTGACGACCATCAAA
* *
164858625 TATGAAAAGGGAAGGTGACGACCATCGATTAATGAAAAGGGATGGTGACGACCATCAAA
1 TATGAAAAGGGAAGGTGACGACCATCG-TAAATGAAAAGGGATAGTGACGACCATCAAA
164858684 TATGAAAAG
1 TATGAAAAG
164858693 AGGTCGTTAT
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
58 26 0.44
59 33 0.56
ACGTcount: A:0.40, C:0.13, G:0.28, T:0.20
Consensus pattern (58 bp):
TATGAAAAGGGAAGGTGACGACCATCGTAAATGAAAAGGGATAGTGACGACCATCAAA
Found at i:164871756 original size:28 final size:28
Alignment explanation
Indices: 164871678--164871980 Score: 263
Period size: 29 Copynumber: 10.5 Consensus size: 28
164871668 GACTATCGAT
* *
164871678 TATGAAAAAGAATGGTGACGACCATCAAC
1 TATG-AAAAGGATGGTGATGACCATCAAC
* *
164871707 TATAAAAATGGATGGTGATGACAATCAAC
1 TATGAAAA-GGATGGTGATGACCATCAAC
*
164871736 TATGAAAAGGATGGCGATGACCATCAAC
1 TATGAAAAGGATGGTGATGACCATCAAC
*
164871764 TATGAAAAGGGTTGGTGATGACCATCAAC
1 TATGAAAA-GGATGGTGATGACCATCAAC
*
164871793 TATGAAAAGGATGGCGATGACCATCAAC
1 TATGAAAAGGATGGTGATGACCATCAAC
164871821 TATGAAAAGGGATGGTGATGACCATCAAC
1 TATGAAAA-GGATGGTGATGACCATCAAC
* **
164871850 TATGAAAAAGGATAGTGACAACCATTGC-A-
1 TATG-AAAAGGATGGTGATGACCA-T-CAAC
* * * * **
164871879 TATGAAAAGGGATAGT-TTCAACTATTGAC
1 TATGAAAA-GGATGGTGAT-GACCATCAAC
* * * *
164871908 T-TGAAATGGATAGTGACGACCATCAGC
1 TATGAAAAGGATGGTGATGACCATCAAC
* * *
164871935 TATGAAAAGGGATGGTGACGACCATCGAT
1 TATGAAAA-GGATGGTGATGACCATCAAC
164871964 TAATGAAAAGTGATGGT
1 T-ATGAAAAG-GATGGT
164871981 AACGACAATA
Statistics
Matches: 227, Mismatches: 32, Indels: 29
0.79 0.11 0.10
Matches are distributed among these distances:
27 13 0.06
28 72 0.32
29 122 0.54
30 19 0.08
31 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (28 bp):
TATGAAAAGGATGGTGATGACCATCAAC
Found at i:164871763 original size:57 final size:58
Alignment explanation
Indices: 164871678--164871862 Score: 293
Period size: 57 Copynumber: 3.2 Consensus size: 58
164871668 GACTATCGAT
* * * * * *
164871678 TATGAAAAAGAATGGTGACGACCATCAACTATAAAAATGGATGGTGATGACAATCAAC
1 TATGAAAAAGGATGGCGATGACCATCAACTATGAAAAGGGATGGTGATGACCATCAAC
*
164871736 TATG-AAAAGGATGGCGATGACCATCAACTATGAAAAGGGTTGGTGATGACCATCAAC
1 TATGAAAAAGGATGGCGATGACCATCAACTATGAAAAGGGATGGTGATGACCATCAAC
164871793 TATG-AAAAGGATGGCGATGACCATCAACTATGAAAAGGGATGGTGATGACCATCAAC
1 TATGAAAAAGGATGGCGATGACCATCAACTATGAAAAGGGATGGTGATGACCATCAAC
164871850 TATGAAAAAGGAT
1 TATGAAAAAGGAT
164871863 AGTGACAACC
Statistics
Matches: 118, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
57 106 0.90
58 12 0.10
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (58 bp):
TATGAAAAAGGATGGCGATGACCATCAACTATGAAAAGGGATGGTGATGACCATCAAC
Found at i:164871862 original size:29 final size:29
Alignment explanation
Indices: 164871678--164871867 Score: 269
Period size: 29 Copynumber: 6.6 Consensus size: 29
164871668 GACTATCGAT
* *
164871678 TATGAAAAAGAATGGTGACGACCATCAAC
1 TATGAAAAAGGATGGTGATGACCATCAAC
*
164871707 TAT-AAAAATGGATGGTGATGACAATCAAC
1 TATGAAAAA-GGATGGTGATGACCATCAAC
*
164871736 TATG-AAAAGGATGGCGATGACCATCAAC
1 TATGAAAAAGGATGGTGATGACCATCAAC
* *
164871764 TATGAAAAGGGTTGGTGATGACCATCAAC
1 TATGAAAAAGGATGGTGATGACCATCAAC
*
164871793 TATG-AAAAGGATGGCGATGACCATCAAC
1 TATGAAAAAGGATGGTGATGACCATCAAC
*
164871821 TATGAAAAGGGATGGTGATGACCATCAAC
1 TATGAAAAAGGATGGTGATGACCATCAAC
*
164871850 TATGAAAAAGGATAGTGA
1 TATGAAAAAGGATGGTGA
164871868 CAACCATTGC
Statistics
Matches: 142, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
28 52 0.37
29 90 0.63
ACGTcount: A:0.41, C:0.14, G:0.25, T:0.21
Consensus pattern (29 bp):
TATGAAAAAGGATGGTGATGACCATCAAC
Found at i:164871874 original size:86 final size:86
Alignment explanation
Indices: 164871678--164871874 Score: 288
Period size: 86 Copynumber: 2.3 Consensus size: 86
164871668 GACTATCGAT
* *
164871678 TATGAAAAAGAATGGTGACGACCATCAACTATAAAAATGGATGGTGATGACAATCAACTATGAAA
1 TATGAAAAAGGATGGTGACGACCATCAACTATAAAAATGGATGGCGATGACAATCAACTATGAAA
164871743 AGGATGGCGATGACCATCAAC
66 AGGATGGCGATGACCATCAAC
* * * * *
164871764 TATGAAAAGGGTTGGTGATGACCATCAACTATGAAAA-GGATGGCGATGACCATCAACTATGAAA
1 TATGAAAAAGGATGGTGACGACCATCAACTATAAAAATGGATGGCGATGACAATCAACTATGAAA
*
164871828 AGGGATGGTGATGACCATCAAC
66 A-GGATGGCGATGACCATCAAC
* *
164871850 TATGAAAAAGGATAGTGACAACCAT
1 TATGAAAAAGGATGGTGACGACCAT
164871875 TGCATATGAA
Statistics
Matches: 97, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
85 26 0.27
86 71 0.73
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (86 bp):
TATGAAAAAGGATGGTGACGACCATCAACTATAAAAATGGATGGCGATGACAATCAACTATGAAA
AGGATGGCGATGACCATCAAC
Found at i:164871913 original size:114 final size:114
Alignment explanation
Indices: 164871653--164871960 Score: 345
Period size: 114 Copynumber: 2.7 Consensus size: 114
164871643 ATCAATTTTA
* * * *
164871653 AAAAGGGATAGTTTCGACTATCGATTATGAAAAAGAATGGTGACGACCATCAACTATAAAAATGG
1 AAAAGGGATAGTTTCGACTATCGACTATG-AAAAGGATGGTGACGACCATCAACTATGAAAAGGG
* * **
164871718 ATGGTGATGACAATCAACTATGAAAAGGATGGCGATGACCATCAACTATG
65 ATGGTGATGACCATCAACTATGAAAAGGATAGCGACAACCATCAACTATG
* * * * * * *
164871768 AAAAGGGTTGGTGAT-GACCATCAACTATGAAAAGGATGGCGATGACCATCAACTATGAAAAGGG
1 AAAAGGGATAGT-TTCGACTATCGACTATGAAAAGGATGGTGACGACCATCAACTATGAAAAGGG
*
164871832 ATGGTGATGACCATCAACTATGAAAAAGGATAGTGACAACCATTGC-A-TATG
65 ATGGTGATGACCATCAACTATG-AAAAGGATAGCGACAACCA-T-CAACTATG
* * * * *
164871883 AAAAGGGATAGTTTCAACTATTGACT-TGAAATGGATAGTGACGACCATCAGCTATGAAAAGGGA
1 AAAAGGGATAGTTTCGACTATCGACTATGAAAAGGATGGTGACGACCATCAACTATGAAAAGGGA
*
164871947 TGGTGACGACCATC
66 TGGTGATGACCATC
164871961 GATTAATGAA
Statistics
Matches: 159, Mismatches: 29, Indels: 11
0.80 0.15 0.06
Matches are distributed among these distances:
114 98 0.62
115 57 0.36
116 3 0.02
117 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (114 bp):
AAAAGGGATAGTTTCGACTATCGACTATGAAAAGGATGGTGACGACCATCAACTATGAAAAGGGA
TGGTGATGACCATCAACTATGAAAAGGATAGCGACAACCATCAACTATG
Done.