Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 531 of 770
Found at i:164872009 original size:29 final size:29
Alignment explanation
Indices: 164871935--164872009 Score: 87
Period size: 30 Copynumber: 2.6 Consensus size: 29
164871925 GACCATCAGC
* * * *
164871935 TATGAAAAGGGATGGTGACGACCATCGAT
1 TATGAAAAGGGATGGTAACGACAATAGAA
*
164871964 TAATGAAAAGTGATGGTAACGACAATAGAA
1 T-ATGAAAAGGGATGGTAACGACAATAGAA
*
164871994 TATGAAAAGGGGTGGT
1 TATGAAAAGGGATGGT
164872010 TATGACCATA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
29 14 0.37
30 24 0.63
ACGTcount: A:0.40, C:0.08, G:0.31, T:0.21
Consensus pattern (29 bp):
TATGAAAAGGGATGGTAACGACAATAGAA
Found at i:164879391 original size:66 final size:68
Alignment explanation
Indices: 164879315--164879501 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
164879305 TAGTACCACT
*
164879315 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
164879377 CACG
65 CACG
164879381 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
164879446 ATCACG
63 ATCACG
164879452 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
164879502 GATACGCATG
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:164879426 original size:71 final size:71
Alignment explanation
Indices: 164879338--164879501 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
164879328 CGATTTGTCT
164879338 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
164879403 CTTTCA
66 CTTTCA
164879409 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
164879474 CTTTCA
66 CTTTCA
164879480 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
164879502 GATACGCATG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:164886838 original size:66 final size:68
Alignment explanation
Indices: 164886762--164886948 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
164886752 TAGTACCACT
*
164886762 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
164886824 CACG
65 CACG
164886828 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
164886893 ATCACG
63 ATCACG
164886899 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
164886949 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:164886873 original size:71 final size:71
Alignment explanation
Indices: 164886785--164886948 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
164886775 CGATTTGTCT
164886785 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
164886850 CTTTCA
66 CTTTCA
164886856 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
164886921 CTTTCA
66 CTTTCA
164886927 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
164886949 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:164886986 original size:71 final size:70
Alignment explanation
Indices: 164886785--164886982 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
164886775 CGATTTGTCT
* * *
164886785 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
164886850 CTTTCA
65 CTTTCA
* * *
164886856 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
164886921 CTTTCA
65 CTTTCA
* *
164886927 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
164886983 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:164891179 original size:28 final size:28
Alignment explanation
Indices: 164891114--164891214 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
164891104 ATAGTGAATC
*
164891114 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
164891143 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
164891171 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
164891201 CGCACACTTAGTGC
1 CGCACACTTAGTGC
164891215 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:164899135 original size:28 final size:28
Alignment explanation
Indices: 164899070--164899170 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
164899060 ATAGTGAATC
*
164899070 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
164899099 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
164899127 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
164899157 CGCACACTTAGTGC
1 CGCACACTTAGTGC
164899171 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:164905996 original size:27 final size:26
Alignment explanation
Indices: 164905966--164906307 Score: 342
Period size: 27 Copynumber: 12.7 Consensus size: 26
164905956 TTAGTTTACC
164905966 AAATTACCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACC-CTGGTTTGTA
* *
164905993 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCC-TGGTTTGTA
*
164906020 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTGGTTTGTA
* ***
164906047 AAATTACCAAAATACCATTGGTTTACG
1 AAATTACCAAAATACC-CTGGTTTGTA
164906074 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTGGTTTGTA
* * *
164906101 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCC-TGGTTTGTA
164906128 AAATTACCAAAATACCACTGGTTTGTA
1 AAATTACCAAAATACC-CTGGTTTGTA
164906155 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTGGTTTGTA
* *
164906182 AAATTATCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCC-TGGTTTGTA
* * *
164906209 AAATTACCAAAATAAACCTGATTTGTG
1 AAATTACCAAAAT-ACCCTGGTTTGTA
** ***
164906236 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCT-GGTTTGTA
*** **
164906263 AAATTATGGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCT-GGTTTGTA
*
164906290 AAATTACCAAAGTACCCT
1 AAATTACCAAAATACCCT
164906308 TGATTTACAG
Statistics
Matches: 265, Mismatches: 40, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
26 13 0.05
27 241 0.91
28 11 0.04
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (26 bp):
AAATTACCAAAATACCCTGGTTTGTA
Found at i:164906241 original size:54 final size:54
Alignment explanation
Indices: 164905966--164906222 Score: 388
Period size: 54 Copynumber: 4.8 Consensus size: 54
164905956 TTAGTTTACC
* *
164905966 AAATTACCAAAATACCTCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * **
164906020 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCATTGGTTTACG
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
164906074 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
164906128 AAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
164906182 AAATTATCAAAATACCCTTAGTTTGTAAAATTACCAAAATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATA
164906223 AACCTGATTT
Statistics
Matches: 182, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 182 1.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:164906321 original size:27 final size:26
Alignment explanation
Indices: 164905960--164906359 Score: 78
Period size: 27 Copynumber: 14.8 Consensus size: 26
164905950 AATACTTTAG
* *
164905960 TTTACCAAATTACCAAAATA-CCTCTGG
1 TTTACAAAATTACC-AAATACCCTC-GA
** * * *
164905987 TTTGTAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTAC-CAAATACCCTCGA
* * *
164906014 TTTATAAAATCACCAAAATACCC-CTGG
1 TTTACAAAATTACC-AAATACCCTC-GA
** * * *
164906041 TTTGTAAAATTACCAAAATACCATTGG
1 TTTACAAAATTACC-AAATACCCTCGA
* *
164906068 TTTACGAAATTACCAAAATACCC-CTGG
1 TTTACAAAATTACC-AAATACCCTC-GA
** * *
164906095 TTTGTAAAATTACTAAAATACCCTTTG-
1 TTTACAAAATTAC-CAAATACCC-TCGA
* *
164906122 TTTATAAAATTACCAAAATACCACT-GG
1 TTTACAAAATTACC-AAATACC-CTCGA
** *
164906149 TTTGTAAAATTACCAAAATACCC-CTGG
1 TTTACAAAATTACC-AAATACCCTC-GA
** * *
164906176 TTTGTAAAATTATCAAAATACCCT-TA
1 TTTACAAAATTA-CCAAATACCCTCGA
** *
164906202 GTTTGTAAAATTACCAAAATAAACCT-GA
1 -TTTACAAAATTACC-AAAT-ACCCTCGA
*** *
164906230 TTTGTGAAATTACTGAAATACCCTCGA
1 TTTACAAAATTAC-CAAATACCCTCGA
** ** **
164906257 CCTGTAAAATTATGGAAATACCCTCGA
1 TTTACAAAATTA-CCAAATACCCTCGA
* ** *
164906284 CTTGTAAAATTACCAAAGTACCCTTGA
1 TTTACAAAATTACCAAA-TACCCTCGA
* ***
164906311 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACC-AAATACCCTCGA
164906338 TTTACAAAATTACCGAAATACC
1 TTTACAAAATTACC-AAATACC
164906360 TCTGTAGGGT
Statistics
Matches: 294, Mismatches: 55, Indels: 48
0.74 0.14 0.12
Matches are distributed among these distances:
26 10 0.03
27 273 0.93
28 11 0.04
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (26 bp):
TTTACAAAATTACCAAATACCCTCGA
Found at i:164906375 original size:27 final size:27
Alignment explanation
Indices: 164906345--164906566 Score: 293
Period size: 27 Copynumber: 8.3 Consensus size: 27
164906335 CGATTTACAA
*
164906345 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
164906372 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
164906399 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
164906426 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
164906453 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
164906480 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
164906507 AATTACTAAAATACCCCTGTAAGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
164906534 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
164906560 AATTACC
1 AATTACC
164906567 ATTTTGCCCC
Statistics
Matches: 176, Mismatches: 19, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
26 15 0.09
27 161 0.91
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:164907045 original size:22 final size:22
Alignment explanation
Indices: 164906993--164907057 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
164906983 TTAAAGCCTT
* *
164906993 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
164907015 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
164907037 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
164907058 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:164907276 original size:27 final size:26
Alignment explanation
Indices: 164907231--164907289 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 26
164907221 TTTGCCATAT
*
164907231 TATCTGTTCTGGTGGCTCT-TCCACAA
1 TATCTGTTCTGGTGACTCTGT-CACAA
164907257 TATCTGTATCTGGTGACTCTGTCACAA
1 TATCTGT-TCTGGTGACTCTGTCACAA
164907284 TATCTG
1 TATCTG
164907290 ATAACTGAGC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 7 0.23
27 22 0.73
28 1 0.03
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.39
Consensus pattern (26 bp):
TATCTGTTCTGGTGACTCTGTCACAA
Found at i:164907464 original size:6 final size:6
Alignment explanation
Indices: 164907449--164907571 Score: 92
Period size: 6 Copynumber: 20.0 Consensus size: 6
164907439 ATTCTGTTAC
* * *
164907449 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * * *
164907498 TTGATT CTG-TT ACCTGATA CTGATT CTGATT TTGATT CTG-TCAC CTGATT
1 CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT
164907548 CTGATT CTGATT CT-AGTT CTGATT
1 CTGATT CTGATT CTGA-TT CTGATT
164907572 GTAACAACCC
Statistics
Matches: 93, Mismatches: 13, Indels: 22
0.73 0.10 0.17
Matches are distributed among these distances:
5 6 0.06
6 74 0.80
7 10 0.11
8 3 0.03
ACGTcount: A:0.19, C:0.17, G:0.16, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:164907490 original size:19 final size:19
Alignment explanation
Indices: 164907468--164907525 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
164907458 ATTCTGATTT
164907468 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
164907487 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
164907499 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
164907518 TGATTCTG
1 TGATTCTG
164907526 ATTTTGATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:164907568 original size:31 final size:31
Alignment explanation
Indices: 164907426--164907559 Score: 232
Period size: 31 Copynumber: 4.3 Consensus size: 31
164907416 TTGCATTCAT
*
164907426 ATTCTGATTTTTTATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
164907458 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
164907489 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* *
164907520 ATTCTGATTTTGATTCTGTCACCTGATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
164907551 ATTCTGATT
1 ATTCTGATT
164907560 CTAGTTCTGA
Statistics
Matches: 99, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
31 92 0.93
32 7 0.07
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:164913285 original size:40 final size:40
Alignment explanation
Indices: 164913208--164913425 Score: 327
Period size: 40 Copynumber: 5.5 Consensus size: 40
164913198 AAACCAAGTA
* *
164913208 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
164913247 CCTTCGGGACTTAGCCC-GATTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-TATAGTAACTCGCACAAATG
* *
164913287 CCTTCGGGACCTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
164913327 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
164913367 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
164913407 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
164913426 TTATCATCCG
Statistics
Matches: 166, Mismatches: 8, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
39 17 0.10
40 147 0.89
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:164916262 original size:46 final size:46
Alignment explanation
Indices: 164916212--164916387 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
164916202 TGGTTGAGCA
164916212 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
164916258 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
164916303 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
164916351 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
164916388 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:164916368 original size:93 final size:93
Alignment explanation
Indices: 164916209--164916380 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
164916199 GGATGGTTGA
* *
164916209 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
164916274 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
164916302 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
164916367 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
164916381 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:164923826 original size:46 final size:47
Alignment explanation
Indices: 164923775--164923905 Score: 155
Period size: 46 Copynumber: 2.8 Consensus size: 47
164923765 ATGGTTGAGC
164923775 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGGATG-GAACTAG
* * *
164923822 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTA-G
164923867 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGG
164923906 GCGGGTTACA
Statistics
Matches: 71, Mismatches: 5, Indels: 13
0.80 0.06 0.15
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.41
47 29 0.41
48 2 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (47 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTAG
Found at i:164923891 original size:47 final size:46
Alignment explanation
Indices: 164923773--164923898 Score: 152
Period size: 47 Copynumber: 2.7 Consensus size: 46
164923763 GGATGGTTGA
* *
164923773 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GGATGCGAAT
*
164923821 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGGATGCGAA-T
164923864 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCG
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCG
164923899 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.41
47 30 0.43
48 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGGATGCGAAT
Found at i:164926440 original size:40 final size:40
Alignment explanation
Indices: 164926355--164926505 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
164926345 AATTGAATGA
* * *
164926355 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
164926395 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
164926436 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
164926475 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
164926506 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:164926519 original size:40 final size:40
Alignment explanation
Indices: 164926391--164926521 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
164926381 TATGCTGGAA
* * *
164926391 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
164926431 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
164926471 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
164926511 ATTATATCCGG
1 ATTATATCCGG
164926522 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:164935640 original size:29 final size:27
Alignment explanation
Indices: 164935606--164935708 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
164935596 TACTCGATCA
*
164935606 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
164935635 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
164935664 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
164935693 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
164935709 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:164943614 original size:29 final size:28
Alignment explanation
Indices: 164943582--164943654 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 28
164943572 ATTTAAGCCT
*
164943582 GCACACATAGTGCCATATAGTCCAAACTC
1 GCACAC-TAGTGCCATACAGTCCAAACTC
* * *
164943611 GCACACTTAGTGCCATACATTTCAAGCTC
1 GCACAC-TAGTGCCATACAGTCCAAACTC
164943640 GCACACTCAGTGCCA
1 GCACACT-AGTGCCA
164943655 ATCTCGTCAC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
28 1 0.03
29 37 0.97
ACGTcount: A:0.30, C:0.33, G:0.15, T:0.22
Consensus pattern (28 bp):
GCACACTAGTGCCATACAGTCCAAACTC
Found at i:164949120 original size:48 final size:46
Alignment explanation
Indices: 164949014--164949367 Score: 249
Period size: 46 Copynumber: 7.5 Consensus size: 46
164949004 TATGTGTGCT
* *
164949014 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AGCATGA-GAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAG-AT-ATAAGCC
*
164949060 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA--TAAGCC
* * * * * *
164949108 AGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACGA-GAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA-TATAAGCC
* *
164949154 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGATATACAAG-T
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT--AAGCC
* * * * * * * *
164949201 AGTGTAAGACCTGTCTGGGACATGGCGTCAG-CTTGTGGTGT--GTC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATATAAGCC
* * * *
164949245 AATGTAAGACCA-GTCTGGGACATGACATCGACAC-CGATAGATGAGAGCC
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGC-CTCGAGATAT-A-AGCC
* * **
164949294 AGTGTAAGACCTATCTGGGACATGGCATCGGCCTCGCTATATGAAAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATAT--AAGCC
164949343 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
164949368 GAGTCAACAT
Statistics
Matches: 241, Mismatches: 44, Indels: 43
0.73 0.13 0.13
Matches are distributed among these distances:
43 2 0.01
44 22 0.09
45 5 0.02
46 72 0.30
47 32 0.13
48 47 0.20
49 47 0.20
50 14 0.06
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAGCC
Found at i:164949163 original size:94 final size:93
Alignment explanation
Indices: 164949014--164949224 Score: 291
Period size: 94 Copynumber: 2.3 Consensus size: 93
164949004 TATGTGTGCT
* * *
164949014 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGCATGAGAGCCAGTGTAAGACATGTTTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGACACAGCACGAGAGCCAGTGTAAGACATGTCTGGG
**
164949079 ACATGCATCGGCCTCGAGATATTTAAGCC
66 ACATGCATCGGCCTCGAGATATACAAG-C
* *
164949108 AGTGTAAGACATGTCTGGGACATGCATC-GACATTGAG-ACGAGAGCTAGTGTAAGACATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGACA--CAGCACGAGAGCCAGTGTAAGACATGTCTG
* *
164949171 GGACATGCATCGGCCTCGTGATATACAAGT
64 GGACATGCATCGGCCTCGAGATATACAAGC
*
164949201 AGTGTAAGACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
164949225 GCGTCAGCTT
Statistics
Matches: 105, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
93 26 0.25
94 77 0.73
95 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGACACAGCACGAGAGCCAGTGTAAGACATGTCTGGG
ACATGCATCGGCCTCGAGATATACAAGC
Found at i:164961974 original size:25 final size:24
Alignment explanation
Indices: 164961946--164962024 Score: 86
Period size: 25 Copynumber: 3.0 Consensus size: 24
164961936 GAAGCATAAT
*
164961946 AAAACAAATAAATAAGAATAAAATA
1 AAAATAAATAAATAA-AATAAAATA
164961971 AAAATAAATAATATAACAATTAAGAATA
1 AAAATAAATAA-ATAA-AA-TAA-AATA
*
164961999 ATAAATATATAAATAAAATAAAATA
1 A-AAATAAATAAATAAAATAAAATA
164962024 A
1 A
164962025 GGAAAAATAA
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
25 15 0.32
26 9 0.19
27 5 0.11
28 9 0.19
29 9 0.19
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (24 bp):
AAAATAAATAAATAAAATAAAATA
Found at i:164961980 original size:15 final size:15
Alignment explanation
Indices: 164961962--164962021 Score: 57
Period size: 15 Copynumber: 3.8 Consensus size: 15
164961952 AATAAATAAG
164961962 AATAAAATAAAAATA
1 AATAAAATAAAAATA
* * *
164961977 AATAATATAACAATT
1 AATAAAATAAAAATA
*
164961992 AAGAATAATAAATATATA
1 AATAA-AATAAA-A-ATA
164962010 AATAAAATAAAA
1 AATAAAATAAAA
164962022 TAAGGAAAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
15 16 0.47
16 5 0.15
17 7 0.21
18 6 0.18
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (15 bp):
AATAAAATAAAAATA
Found at i:164961982 original size:37 final size:37
Alignment explanation
Indices: 164961941--164962015 Score: 89
Period size: 37 Copynumber: 2.0 Consensus size: 37
164961931 AAGCAGAAGC
*
164961941 ATAATAAAACAAATAAATAAGAATAAA-ATAAAAATAA
1 ATAATAAAAC-AATAAAGAAGAATAAATATAAAAATAA
* * * *
164961978 ATAATATAACAATTAAGAATAATAAATATATAAATAA
1 ATAATAAAACAATAAAGAAGAATAAATATAAAAATAA
164962015 A
1 A
164962016 ATAAAATAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
36 13 0.41
37 19 0.59
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (37 bp):
ATAATAAAACAATAAAGAAGAATAAATATAAAAATAA
Found at i:164965950 original size:20 final size:20
Alignment explanation
Indices: 164965900--164965950 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
164965890 TGGGATTTTG
*
164965900 ATGCACATGACATGTATGAT
1 ATGCACATGATATGTATGAT
164965920 ATGCACATGATATGTATGAT
1 ATGCACATGATATGTATGAT
164965940 ATGCACATGAT
1 ATGCACATGAT
164965951 GTAATCATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGCACATGATATGTATGAT
Found at i:164966076 original size:24 final size:23
Alignment explanation
Indices: 164966000--164966186 Score: 256
Period size: 24 Copynumber: 8.0 Consensus size: 23
164965990 GAGGAAGTGC
164966000 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
164966023 TAAAGGGCTTATGCCCCAG-T-T
1 AAAAGGGCTTATGCCCCAGTTAT
164966044 -AAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
164966066 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
164966090 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
164966114 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
164966137 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
164966162 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
164966186 A
1 A
164966187 TGATAAAGCA
Statistics
Matches: 150, Mismatches: 6, Indels: 15
0.88 0.04 0.09
Matches are distributed among these distances:
20 18 0.12
21 2 0.01
22 2 0.01
23 40 0.27
24 77 0.51
25 11 0.07
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:164966136 original size:47 final size:47
Alignment explanation
Indices: 164965999--164966164 Score: 268
Period size: 47 Copynumber: 3.6 Consensus size: 47
164965989 GGAGGAAGTG
164965999 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG-T-T
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
164966044 --AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
164966090 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
164966137 AAAAAGGGCTTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
164966165 AGAGGCTAGG
Statistics
Matches: 112, Mismatches: 4, Indels: 8
0.90 0.03 0.06
Matches are distributed among these distances:
43 22 0.20
44 18 0.16
45 1 0.01
46 1 0.01
47 48 0.43
48 22 0.20
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:164966451 original size:30 final size:31
Alignment explanation
Indices: 164966377--164966470 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
164966367 CGTTTACAGT
164966377 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
164966408 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
164966439 AAAGGC-TCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
164966469 AA
1 AA
164966471 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
30 25 0.40
31 37 0.60
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:164970607 original size:29 final size:29
Alignment explanation
Indices: 164970572--164970677 Score: 149
Period size: 29 Copynumber: 3.7 Consensus size: 29
164970562 ATACTCGATT
* ** **
164970572 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATACCCTTCGAGC
* *
164970601 CCGCACACATAGTGCCATACCCTTCGAGC
1 TCGCACACTTAGTGCCATACCCTTCGAGC
164970630 TCGCACACTTAGTGCCATACCCTTCGAGC
1 TCGCACACTTAGTGCCATACCCTTCGAGC
164970659 TCGCACACTTAGTGCCATA
1 TCGCACACTTAGTGCCATA
164970678 TATTTCCAGC
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 68 1.00
ACGTcount: A:0.24, C:0.35, G:0.18, T:0.24
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATACCCTTCGAGC
Found at i:164970693 original size:29 final size:29
Alignment explanation
Indices: 164970632--164970731 Score: 139
Period size: 29 Copynumber: 3.4 Consensus size: 29
164970622 CTTCGAGCTC
*** *
164970632 GCACACTTAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
164970660 CGCACACTTAGTGCCATATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
*
164970690 GCACAGTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
164970719 GCACACTTAGTGC
1 GCACACTTAGTGC
164970732 TAATCTCGTC
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
29 63 0.98
30 1 0.02
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:164970694 original size:58 final size:58
Alignment explanation
Indices: 164970572--164970706 Score: 146
Period size: 58 Copynumber: 2.3 Consensus size: 58
164970562 ATACTCGATT
* * * * *
164970572 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACATAGTGCCATACCCTTCGAGC
1 TCGCACACTTAGTGCCATACCATTCAAGCCCGCACACATAGTGCCATACACTTCCAGC
* * * * * *
164970630 TCGCACACTTAGTGCCATACCCTTCGAGCTCGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATACCATTCAAGCCCGCACACATAGTGCCATACACTTCCAGC
*
164970688 AT-GCACAGTTAGTGCCATA
1 -TCGCACACTTAGTGCCATA
164970707 TATTTCCAGC
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
58 63 0.98
59 1 0.02
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATACCATTCAAGCCCGCACACATAGTGCCATACACTTCCAGC
Found at i:164979481 original size:68 final size:70
Alignment explanation
Indices: 164979409--164979606 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
164979399 ACACCCTGTA
* * * *
164979409 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
164979471 ATAAAT
65 ATAAAT
*
164979477 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
164979542 ATAAAT
65 ATAAAT
*
164979548 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
164979607 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:164979520 original size:41 final size:41
Alignment explanation
Indices: 164979475--164979592 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
164979465 TGAAAGATAA
164979475 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
164979516 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
164979546 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
164979587 ATGTAG
1 ATGTAG
164979593 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:164979532 original size:71 final size:71
Alignment explanation
Indices: 164979443--164979606 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
164979433 GAGATGTATC
164979443 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
164979508 AGGACA
66 AGGACA
164979514 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
164979579 AGGACA
66 AGGACA
164979585 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
164979607 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:164987048 original size:68 final size:70
Alignment explanation
Indices: 164986976--164987173 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
164986966 ACACCCTGTA
* * * *
164986976 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
164987038 ATAAAT
65 ATAAAT
*
164987044 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
164987109 ATAAAT
65 ATAAAT
*
164987115 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
164987174 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:164987087 original size:41 final size:41
Alignment explanation
Indices: 164987042--164987159 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
164987032 TGAAAGATAA
164987042 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
164987083 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
164987113 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
164987154 ATGTAG
1 ATGTAG
164987160 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:164987099 original size:71 final size:71
Alignment explanation
Indices: 164987010--164987173 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
164987000 GAGATGTATC
164987010 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
164987075 AGGACA
66 AGGACA
164987081 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
164987146 AGGACA
66 AGGACA
164987152 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
164987174 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:164994823 original size:40 final size:40
Alignment explanation
Indices: 164994724--164994914 Score: 269
Period size: 40 Copynumber: 4.8 Consensus size: 40
164994714 TGGATGATAA
* * * * **
164994724 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
164994764 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
164994803 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
164994843 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
164994883 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
164994915 AGCTATATCC
Statistics
Matches: 138, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 33 0.24
40 103 0.75
41 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:164999718 original size:29 final size:28
Alignment explanation
Indices: 164999672--164999751 Score: 108
Period size: 29 Copynumber: 2.8 Consensus size: 28
164999662 GACTATAAAA
164999672 GTGATTGGGCCTAGTGGGCCATAT-AGAT
1 GTGATTGGGCCTAGTGGGCCATATGA-AT
* *
164999700 GTGATTTGGGTCTAATGGGCCATATGAAT
1 GTGA-TTGGGCCTAGTGGGCCATATGAAT
*
164999729 GAGATTGGGCCTAGTGGGCCATA
1 GTGATTGGGCCTAGTGGGCCATA
164999752 AGCATGTATG
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
28 21 0.47
29 23 0.51
30 1 0.02
ACGTcount: A:0.23, C:0.14, G:0.35, T:0.29
Consensus pattern (28 bp):
GTGATTGGGCCTAGTGGGCCATATGAAT
Found at i:165006599 original size:21 final size:21
Alignment explanation
Indices: 165006556--165006599 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
165006546 ACACATGCAA
* *
165006556 AAACTAACAATATATGAATCT
1 AAACTAACAACATATGAAACT
165006577 AAACTAACAACATACT-AAACT
1 AAACTAACAACATA-TGAAACT
165006598 AA
1 AA
165006600 TTGAGACAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.57, C:0.18, G:0.02, T:0.23
Consensus pattern (21 bp):
AAACTAACAACATATGAAACT
Found at i:165006816 original size:5 final size:5
Alignment explanation
Indices: 165006792--165006861 Score: 58
Period size: 5 Copynumber: 14.4 Consensus size: 5
165006782 AAAAATTAGT
* *
165006792 AAAT- AAATA GAAT- AAA-A AAATAA AAATAA AAATA AAATA AAATA AACTA
1 AAATA AAATA AAATA AAATA AAAT-A AAAT-A AAATA AAATA AAATA AAATA
* *
165006841 AAATA AGAT- AAAGA AAATA AA
1 AAATA AAATA AAATA AAATA AA
165006862 GAAATGGGGA
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
4 11 0.21
5 31 0.58
6 11 0.21
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.17
Consensus pattern (5 bp):
AAATA
Found at i:165006862 original size:9 final size:8
Alignment explanation
Indices: 165006792--165006866 Score: 53
Period size: 9 Copynumber: 8.5 Consensus size: 8
165006782 AAAAATTAGT
165006792 AAATAAATA
1 AAATAAA-A
*
165006801 GAATAAAA
1 AAATAAAA
165006809 AAATAAAA
1 AAATAAAA
165006817 ATAA-AAATA
1 A-AATAAA-A
165006826 AAATAAAA
1 AAATAAAA
165006834 TAAACTAAAA
1 -AAA-TAAAA
165006844 TAAGATAAAGA
1 -AA-ATAAA-A
*
165006855 AAATAAAG
1 AAATAAAA
165006863 AAAT
1 AAAT
165006867 GGGGAAACCG
Statistics
Matches: 56, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
8 19 0.34
9 21 0.38
10 14 0.25
11 2 0.04
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.17
Consensus pattern (8 bp):
AAATAAAA
Found at i:165016698 original size:71 final size:71
Alignment explanation
Indices: 165016612--165016774 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
165016602 CGATTTGTCT
165016612 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
165016677 CTTTCA
66 CTTTCA
165016683 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
165016748 CTTTCA
66 CTTTCA
165016754 CGTAGCTCTCTTG-CTACATGG
1 CGTAGCTCTCTTGTCTACATGG
165016775 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 8 0.09
71 84 0.91
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:165034749 original size:70 final size:70
Alignment explanation
Indices: 165034662--165035033 Score: 636
Period size: 70 Copynumber: 5.2 Consensus size: 70
165034652 CAAGTGACAG
*
165034662 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
165034727 GTTTC
66 GTTTC
165034732 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
165034797 GTTTC
66 GTTTC
*
165034802 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
165034867 GTTTC
66 GTTTC
*
165034872 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTC
165034937 AATTTATGTTTC
59 AATTTATGTTTC
*
165034949 AAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
165035014 GTTTC
66 GTTTC
165035019 AAAAATCAACTCATA
1 -AAAATCAACTCATA
165035034 GGTGAGTTGA
Statistics
Matches: 288, Mismatches: 6, Indels: 15
0.93 0.02 0.05
Matches are distributed among these distances:
70 203 0.70
71 16 0.06
72 1 0.00
75 1 0.00
76 2 0.01
77 65 0.23
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
GTTTC
Found at i:165034948 original size:77 final size:77
Alignment explanation
Indices: 165034856--165035011 Score: 294
Period size: 77 Copynumber: 2.0 Consensus size: 77
165034846 GTTGAGGTAA
*
165034856 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGA
1 TTTCAATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGA
165034921 GGTAATTTCAAT
66 GGTAATTTCAAT
*
165034933 TTTCAATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
1 TTTCAATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGA
165034998 GGTAATTTCAAT
66 GGTAATTTCAAT
165035010 TT
1 TT
165035012 ATGTTTCAAA
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.34
Consensus pattern (77 bp):
TTTCAATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGA
GGTAATTTCAAT
Found at i:165035064 original size:210 final size:205
Alignment explanation
Indices: 165034662--165035070 Score: 599
Period size: 217 Copynumber: 1.9 Consensus size: 205
165034652 CAAGTGACAG
*
165034662 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTAT
*
165034727 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
66 GTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
*
165034792 TTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAAT
131 TTTATGTTTCAAAATCAACTCA-ATT----GAGGTGAGTTAAGCCTCAAGACACGCTGAGGTAAT
165034857 TTCAATTTATGTTTC
191 TTCAATTTATGTTTC
*
165034872 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
1 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGG-----T-AA-TTTC
165034937 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
59 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
* ** *
165035002 ATTTCAATTTATGTTTCAAAAATCAACTC-A-T-AGGTGAGTTGAGCCTCGGGGCACGCTGAGGT
124 ATTTCAATTTATGTTTC-AAAATCAACTCAATTGAGGTGAGTTAAGCCTCAAGACACGCTGAGGT
*
165035064 ATTTTCA
188 AATTTCA
165035071 GTCTCTACTT
Statistics
Matches: 182, Mismatches: 9, Indels: 16
0.88 0.04 0.08
Matches are distributed among these distances:
210 81 0.45
215 2 0.01
216 3 0.02
217 85 0.47
218 11 0.06
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.31
Consensus pattern (205 bp):
AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTAT
GTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
TTTATGTTTCAAAATCAACTCAATTGAGGTGAGTTAAGCCTCAAGACACGCTGAGGTAATTTCAA
TTTATGTTTC
Found at i:165035087 original size:147 final size:140
Alignment explanation
Indices: 165034662--165035134 Score: 566
Period size: 140 Copynumber: 3.3 Consensus size: 140
165034652 CAAGTGACAG
165034662 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
165034727 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG----T-AAT
66 GTTTCAAAATCAACTCA-ATT----GAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAAT
165034787 TTCAATTTATGTTTC
126 TTCAATTTATGTTTC
* *
165034802 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
*
165034867 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAA
66 GTTTCAAAATCAACTCA-ATT----GAGGTGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTCAA
165034932 TTTTCAATTTATGTTTC
125 -TTTCAATTTATGTTTC
* *
165034949 AAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
** * *
165035014 GTTTCAAAAATCAACTC-A-T-AGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAGTCTC
66 GTTTC-AAAATCAACTCAATTGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA-TTTCA-----
* *
165035076 TACTTTCCAATTCCTGTTTTTC
124 -A-TTT-CAATT--TATGTTTC
165035098 AAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCT
1 -AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCT
165035135 GTTAATTTCT
Statistics
Matches: 299, Mismatches: 15, Indels: 28
0.87 0.04 0.08
Matches are distributed among these distances:
139 1 0.00
140 149 0.50
145 2 0.01
146 7 0.02
147 89 0.30
148 11 0.04
149 6 0.02
150 34 0.11
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (140 bp):
AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
GTTTCAAAATCAACTCAATTGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTTCAA
TTTATGTTTC
Found at i:165035176 original size:54 final size:52
Alignment explanation
Indices: 165035084--165035238 Score: 194
Period size: 54 Copynumber: 3.0 Consensus size: 52
165035074 TCTACTTTCC
* *
165035084 AATTCCTGTTTTTCAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTGTT
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC--TT
* *
165035138 AATTTCTGTCTTTCAAAAAGCAACTCATATTGCGAGAGGTGAGTTGTA-CC-T
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCCTT
**
165035189 --TTT-TGTTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTT
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
165035238 A
1 A
165035239 GGTCATATGT
Statistics
Matches: 89, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
47 1 0.01
48 38 0.43
49 4 0.04
51 1 0.01
54 44 0.49
55 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (52 bp):
AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
Found at i:165035991 original size:35 final size:35
Alignment explanation
Indices: 165035945--165036050 Score: 194
Period size: 35 Copynumber: 3.0 Consensus size: 35
165035935 CACTTGCCTC
165035945 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
165035980 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
* *
165036015 CTCCCACTCTCCCATGCTGTCTGCCGCCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
165036050 T
1 T
165036051 CACACACCCC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 68 1.00
ACGTcount: A:0.16, C:0.49, G:0.12, T:0.23
Consensus pattern (35 bp):
TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
Found at i:165036496 original size:33 final size:33
Alignment explanation
Indices: 165036454--165036527 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 33
165036444 AGAGGGGAAG
*
165036454 CAAAAAAAAAAATCCAGCAAAAAA-TTCCAGCA
1 CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
**
165036486 CCAAAAAAAAATTTCCAGAAAAAAATTTCCAGCA
1 -CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
165036520 -AAAAAAAA
1 CAAAAAAAA
165036528 CCAAAAAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
32 8 0.22
33 21 0.57
34 8 0.22
ACGTcount: A:0.64, C:0.19, G:0.05, T:0.12
Consensus pattern (33 bp):
CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
Found at i:165036814 original size:11 final size:11
Alignment explanation
Indices: 165036785--165036834 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
165036775 CGACCGGATT
* *
165036785 TCCCTTCCCCC
1 TCCCTTCTCTC
165036796 TCCCTTCTCTC
1 TCCCTTCTCTC
165036807 TCCCTTCTCTC
1 TCCCTTCTCTC
165036818 TTCCC-TCTCTC
1 -TCCCTTCTCTC
*
165036829 TTCCTT
1 TCCCTT
165036835 TTTTTCTTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 3 0.09
11 27 0.79
12 4 0.12
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (11 bp):
TCCCTTCTCTC
Found at i:165037360 original size:2 final size:2
Alignment explanation
Indices: 165037348--165037479 Score: 57
Period size: 2 Copynumber: 69.0 Consensus size: 2
165037338 ATCATTTCTA
* * *
165037348 AT AT GT AT AT AT AT AT AT AT AT -T AT GT GT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* ** * * *
165037388 AT AT -T AT GT AT AT AT GCC AT -T AGT -T AT AT AT TT CT -T AT GT
1 AT AT AT AT AT AT AT AT -AT AT AT A-T AT AT AT AT AT AT AT AT AT
* * *
165037428 AT AT AT -T CT -T AA AT ACT AT -T AT AT AC AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT
*
165037468 AT AT AT GT AT AT
1 AT AT AT AT AT AT
165037480 TTTAAATTCC
Statistics
Matches: 98, Mismatches: 20, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
1 9 0.09
2 86 0.88
3 3 0.03
ACGTcount: A:0.39, C:0.05, G:0.06, T:0.51
Consensus pattern (2 bp):
AT
Found at i:165037383 original size:22 final size:23
Alignment explanation
Indices: 165037351--165037402 Score: 88
Period size: 22 Copynumber: 2.3 Consensus size: 23
165037341 ATTTCTAATA
165037351 TGTATATATATATATATATTATG
1 TGTATATATATATATATATTATG
165037374 TGTAT-TATATATATATATTATG
1 TGTATATATATATATATATTATG
*
165037396 TATATAT
1 TGTATAT
165037403 GCCATTAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 21 0.78
23 6 0.22
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (23 bp):
TGTATATATATATATATATTATG
Found at i:165037585 original size:2 final size:2
Alignment explanation
Indices: 165037568--165037604 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
165037558 GTGTATATTT
* *
165037568 TA TA TA CA TA TG TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
165037605 TTTGCACATA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:165037656 original size:13 final size:13
Alignment explanation
Indices: 165037635--165037664 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
165037625 ATATTATTGT
165037635 TGTAAATTTTTTA
1 TGTAAATTTTTTA
*
165037648 TGTATATTTTTTA
1 TGTAAATTTTTTA
165037661 TGTA
1 TGTA
165037665 CGTTTCCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (13 bp):
TGTAAATTTTTTA
Found at i:165040285 original size:16 final size:16
Alignment explanation
Indices: 165040266--165040302 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
165040256 AACCTAACCC
165040266 AAAAAAAAA-AACAAAG
1 AAAAAAAAAGAA-AAAG
165040282 AAAAAAAAAGAAAAAG
1 AAAAAAAAAGAAAAAG
165040298 AAAAA
1 AAAAA
165040303 CTTACCCCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 18 0.90
17 2 0.10
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAGAAAAAG
Found at i:165040317 original size:16 final size:17
Alignment explanation
Indices: 165040298--165040335 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
165040288 AAAGAAAAAG
*
165040298 AAAAACTTA-CCCCAAA
1 AAAAACTAACCCCCAAA
*
165040314 AAAACCTAACCCCCAAA
1 AAAAACTAACCCCCAAA
165040331 AAAAA
1 AAAAA
165040336 AGAAGAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.61, C:0.32, G:0.00, T:0.08
Consensus pattern (17 bp):
AAAAACTAACCCCCAAA
Found at i:165040946 original size:2 final size:2
Alignment explanation
Indices: 165040941--165040972 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
165040931 TAAATACTAT
165040941 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
165040973 AATACCATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:165041076 original size:2 final size:2
Alignment explanation
Indices: 165041064--165041107 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
165041054 TTTTATGTAC
* * *
165041064 AT AT GT AT AT AT AT GT AT AT AT AT AT AT AC AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
165041106 AT
1 AT
165041108 TTGTACATAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (2 bp):
AT
Found at i:165041088 original size:16 final size:16
Alignment explanation
Indices: 165041064--165041117 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
165041054 TTTTATGTAC
*
165041064 ATATGTATATATATGT
1 ATATATATATATATGT
**
165041080 ATATATATATATACAT
1 ATATATATATATATGT
*
165041096 ATATATATATATTTGT
1 ATATATATATATATGT
*
165041112 ACATAT
1 ATATAT
165041118 TATTATTTTA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.48
Consensus pattern (16 bp):
ATATATATATATATGT
Found at i:165041130 original size:13 final size:13
Alignment explanation
Indices: 165041114--165041154 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
165041104 ATATTTGTAC
*
165041114 ATATTATTATTTT
1 ATATTATTATTGT
*
165041127 ATATTATTGTTGT
1 ATATTATTATTGT
165041140 ATATT-TTA-TGT
1 ATATTATTATTGT
165041151 ATAT
1 ATAT
165041155 ATTTTTTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 7 0.28
12 2 0.08
13 16 0.64
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.63
Consensus pattern (13 bp):
ATATTATTATTGT
Found at i:165041225 original size:37 final size:37
Alignment explanation
Indices: 165041183--165041284 Score: 93
Period size: 37 Copynumber: 2.6 Consensus size: 37
165041173 CTAATATTTT
165041183 CTTTTATTGTAGATATTATTATTATTATTAT-TACATA
1 CTTTTATT-TAGATATTATTATTATTATTATGTACATA
*
165041220 CTTTTATTATATGCATATATATATATGTATTTTTATGTACATA
1 CTTTTATT-TA-G-ATAT-TAT-TAT-TATTATTATGTACATA
*
165041263 -TTATTATTT-TATATTATTATTA
1 CTT-TTATTTAGATATTATTATTA
165041285 CCAAATATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 8 0.15
40 3 0.05
41 3 0.05
42 11 0.20
43 11 0.20
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (37 bp):
CTTTTATTTAGATATTATTATTATTATTATGTACATA
Found at i:165042433 original size:447 final size:447
Alignment explanation
Indices: 165041513--165042392 Score: 1525
Period size: 447 Copynumber: 2.0 Consensus size: 447
165041503 ATTTAATATT
** * *
165041513 AAGCTATCGATTTCATCGCTATGTTGGGTGAAATTCGTCGGCTTGTGTTAAAAAATGGGACACCC
1 AAGCTATCGACGTCATCACTATGTTGGGTGAAATTCGTCGGCTTGTGTTAAAAAACGGGACACCC
165041578 TTTCTAAAAAAATCGAAAACTAAAAATTCTCATTTTTCAATCGGATCACGATTAAATATTATATT
66 TTTCTAAAAAAATCGAAAACTAAAAATTCTCATTTTTCAATCGGATCACGATTAAATATTATATT
165041643 GAACTCGTATTTTTGAAAATCAAGTCAACACATGTTTATGAGATACCAATTTTGGGCGTCGCGAG
131 GAACTCGTATTTTTGAAAATCAAGTCAACACATGTTTATGAGATACCAATTTTGGGCGTCGCGAG
165041708 GGTGCTAATACCTTCCTCGCGCGTAACTGACTCCCGAACCCCAATTTTTTTCTGGACTTTTGACG
196 GGTGCTAATACCTTCCTCGCGCGTAACTGACTCCCGAACCCCAATTTTTTTCTGGACTTTTGACG
165041773 TAGACCTAAATTCGGCCCTCATTTTTGTGCAAGAATAAGTTTTCTTTTTCTAAAAAAGGATGGTT
261 TAGACCTAAATTCGGCCCTCATTTTTGTGCAAGAATAAGTTTTCTTTTTCTAAAAAAGGATGGTT
165041838 TATTAGGTGTCCGGTCACACCTAGAAAAAAGATCGGTGGCGACTCCCTTTTTTAATAAAATCGAA
326 TATTAGGTGTCCGGTCACACCTAGAAAAAAGATCGGTGGCGACTCCCTTTTTTAATAAAATCGAA
* * * ***** * * * *
165041903 AGTTGGTTTTCTTTTTCTAAAAAAGGATGGTTTATTAGGTGTCCGGTCACACCTAGA
391 AGTTGGTTTTCATGTTCTAAAAAAGCATCCACAATTAGGCGACCAGTCACAACTAGA
** *
165041960 AAGCTATCGATTTCATCGCTATGTTGGGTGAAATTCGTCGGCTTGTGTTAAAAAACGGGACACCC
1 AAGCTATCGACGTCATCACTATGTTGGGTGAAATTCGTCGGCTTGTGTTAAAAAACGGGACACCC
165042025 TTTCTAAAAAAATCGAAAACTAAAAATTCTCATTTTTCAATCGGATCACGATTAAATATTATATT
66 TTTCTAAAAAAATCGAAAACTAAAAATTCTCATTTTTCAATCGGATCACGATTAAATATTATATT
165042090 GAACTCGTATTTTTGAAAATCAAGTCAACACATGTTTATGAGATACCAATTTTGGGCGTCGCGAG
131 GAACTCGTATTTTTGAAAATCAAGTCAACACATGTTTATGAGATACCAATTTTGGGCGTCGCGAG
165042155 GGTGCTAATACCTTCCTCGCGCGTAACTGACTCCCGAACCCCAA-TTTTTTCTGGACTTTTGACG
196 GGTGCTAATACCTTCCTCGCGCGTAACTGACTCCCGAACCCCAATTTTTTTCTGGACTTTTGACG
165042219 TAGACCTAAATTCGGCCCTCATTTTTGTGCAAGAATAAGTTTTCTTTTTCTAAAAAAGGATGGTT
261 TAGACCTAAATTCGGCCCTCATTTTTGTGCAAGAATAAGTTTTCTTTTTCTAAAAAAGGATGGTT
165042284 TATTAGGTGTCCGGTCACACCTAGAAAAAAGATCGGTGGCGACTCCCTTTTTTAATAAAATCGAA
326 TATTAGGTGTCCGGTCACACCTAGAAAAAAGATCGGTGGCGACTCCCTTTTTTAATAAAATCGAA
* *
165042349 AGTTGGTTTTCAAATGTT-TAATAAATCA-CCACAATTA-GCGACCA
391 AGTTGGTTTTC--ATGTTCTAAAAAAGCATCCACAATTAGGCGACCA
165042393 AGCGAAACTA
Statistics
Matches: 417, Mismatches: 14, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
445 4 0.01
446 165 0.40
447 245 0.59
448 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (447 bp):
AAGCTATCGACGTCATCACTATGTTGGGTGAAATTCGTCGGCTTGTGTTAAAAAACGGGACACCC
TTTCTAAAAAAATCGAAAACTAAAAATTCTCATTTTTCAATCGGATCACGATTAAATATTATATT
GAACTCGTATTTTTGAAAATCAAGTCAACACATGTTTATGAGATACCAATTTTGGGCGTCGCGAG
GGTGCTAATACCTTCCTCGCGCGTAACTGACTCCCGAACCCCAATTTTTTTCTGGACTTTTGACG
TAGACCTAAATTCGGCCCTCATTTTTGTGCAAGAATAAGTTTTCTTTTTCTAAAAAAGGATGGTT
TATTAGGTGTCCGGTCACACCTAGAAAAAAGATCGGTGGCGACTCCCTTTTTTAATAAAATCGAA
AGTTGGTTTTCATGTTCTAAAAAAGCATCCACAATTAGGCGACCAGTCACAACTAGA
Found at i:165043391 original size:22 final size:23
Alignment explanation
Indices: 165043366--165043411 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
165043356 AGGACTATTT
165043366 ACTCATG-CAAGAGAAAAAGAAA
1 ACTCATGACAAGAGAAAAAGAAA
*
165043388 ACTCATGACAAGAGAAAAATAAA
1 ACTCATGACAAGAGAAAAAGAAA
165043411 A
1 A
165043412 AACTAATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.61, C:0.13, G:0.15, T:0.11
Consensus pattern (23 bp):
ACTCATGACAAGAGAAAAAGAAA
Found at i:165044213 original size:2 final size:2
Alignment explanation
Indices: 165044206--165044231 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
165044196 TTATAGGATC
165044206 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
165044232 TAAAATGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:165046509 original size:10 final size:10
Alignment explanation
Indices: 165046496--165046550 Score: 53
Period size: 10 Copynumber: 5.7 Consensus size: 10
165046486 CAATTTCTTT
165046496 TAAAATATTA
1 TAAAATATTA
*
165046506 TAAAAAATT-
1 TAAAATATTA
*
165046515 TAAAATTTTA
1 TAAAATATTA
*
165046525 AAAAATA-TA
1 TAAAATATTA
165046534 TAAATATATTA
1 TAAA-ATATTA
165046545 -AAAATA
1 TAAAATA
165046551 ATTTTAAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
9 15 0.42
10 19 0.53
11 2 0.06
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
TAAAATATTA
Found at i:165046518 original size:19 final size:19
Alignment explanation
Indices: 165046494--165046559 Score: 66
Period size: 19 Copynumber: 3.4 Consensus size: 19
165046484 ATCAATTTCT
165046494 TTTAAAATATTATAAAAAA
1 TTTAAAATATTATAAAAAA
165046513 TTTAAAAT-TT-TAAAAAA
1 TTTAAAATATTATAAAAAA
165046530 TATATAAATATATTA-AAAATAA
1 T-T-TAAA-ATATTATAAAA-AA
165046552 TTTTAAAA
1 -TTTAAAA
165046560 ATGAAAAATA
Statistics
Matches: 40, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
17 8 0.20
18 3 0.08
19 12 0.30
20 3 0.08
21 10 0.25
22 3 0.08
23 1 0.03
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TTTAAAATATTATAAAAAA
Found at i:165046566 original size:19 final size:20
Alignment explanation
Indices: 165046544--165046582 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
165046534 TAAATATATT
165046544 AAAAATA-ATTTTAAAAATG
1 AAAAATAGATTTTAAAAATG
165046563 AAAAATAGGATTTTAAAAAT
1 AAAAATA-GATTTTAAAAAT
165046583 TATAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
21 11 0.61
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (20 bp):
AAAAATAGATTTTAAAAATG
Found at i:165046806 original size:20 final size:20
Alignment explanation
Indices: 165046780--165046818 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
165046770 TTTTACTAGA
165046780 AAAAAAACTAAAATTAATTCT
1 AAAAAAA-TAAAATTAATTCT
*
165046801 AAAAAAATAAATTTAATT
1 AAAAAAATAAAATTAATT
165046819 TTTAAGAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAAAAATAAAATTAATTCT
Found at i:165047624 original size:31 final size:31
Alignment explanation
Indices: 165047578--165047650 Score: 139
Period size: 31 Copynumber: 2.4 Consensus size: 31
165047568 TTTGTTGTTA
165047578 GTCAAATT-AACTTTTCTTGAAAAGTTAATT
1 GTCAAATTCAACTTTTCTTGAAAAGTTAATT
165047608 GTCAAATTCAACTTTTCTTGAAAAGTTAATT
1 GTCAAATTCAACTTTTCTTGAAAAGTTAATT
165047639 GTCAAATTCAAC
1 GTCAAATTCAAC
165047651 GAGTCAAAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
30 8 0.19
31 34 0.81
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.40
Consensus pattern (31 bp):
GTCAAATTCAACTTTTCTTGAAAAGTTAATT
Found at i:165049365 original size:137 final size:136
Alignment explanation
Indices: 165049119--165049404 Score: 518
Period size: 137 Copynumber: 2.1 Consensus size: 136
165049109 CATTGGGCCT
**
165049119 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
165049184 AGCCCCTTATTCAGATAACAGTAGGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTAGGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
165049249 CATATGC
130 CATATGC
*
165049256 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGATCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
165049321 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTAGGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
165049386 ATATGC
131 ATATGC
165049392 AAGCCCATTTGGG
1 AAGCCCATTTGGG
165049405 GAGACTACTC
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 22 0.15
137 122 0.85
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTAGGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:165051215 original size:26 final size:26
Alignment explanation
Indices: 165051179--165051314 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
165051169 CATGATATTC
165051179 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
165051205 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
165051231 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
165051257 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
165051283 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
165051309 TTATCA
1 TTATCA
165051315 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:165051882 original size:17 final size:18
Alignment explanation
Indices: 165051842--165051888 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
165051832 TAATTATATG
165051842 TTTATATTTTTCCTATTAA
1 TTTATATTTTT-CTATTAA
* *
165051861 ATTATATTTTT-TATTTA
1 TTTATATTTTTCTATTAA
165051878 TTTATATTTTT
1 TTTATATTTTT
165051889 AATTCAACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 15 0.60
19 10 0.40
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTATATTTTTCTATTAA
Found at i:165054815 original size:46 final size:46
Alignment explanation
Indices: 165054748--165054839 Score: 123
Period size: 46 Copynumber: 2.0 Consensus size: 46
165054738 ATAATTTTCC
* * *
165054748 AACTCAATTGTTACCGATTAATGGATGACATG-ACTCCGCTAAATAT
1 AACTCAATTGATACCGATTAATGGAGGACATGAACT-CGCCAAATAT
* *
165054794 AACTCAATTGATACGGATTAATTGAGGACATGAACTCGCCAAATAT
1 AACTCAATTGATACCGATTAATGGAGGACATGAACTCGCCAAATAT
165054840 TTAAAGAATA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
46 37 0.93
47 3 0.08
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (46 bp):
AACTCAATTGATACCGATTAATGGAGGACATGAACTCGCCAAATAT
Found at i:165057114 original size:16 final size:16
Alignment explanation
Indices: 165057093--165057169 Score: 73
Period size: 16 Copynumber: 4.4 Consensus size: 16
165057083 TGTAAAAAAG
165057093 AAATAAAGAAAATTAA
1 AAATAAAGAAAATTAA
*
165057109 AAATAAAGAAAATGAA
1 AAATAAAGAAAATTAA
165057125 AACACTAAAAGAAGAAATTTAA
1 AA-A-T-AAAG-A-AAA-TTAA
*
165057147 AAATAAAGAATAAGTAA
1 AAATAAAGAA-AATTAA
165057164 AAATAA
1 AAATAA
165057170 TAAATAAATA
Statistics
Matches: 51, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
16 17 0.33
17 11 0.22
18 4 0.08
19 8 0.16
20 2 0.04
21 4 0.08
22 5 0.10
ACGTcount: A:0.71, C:0.03, G:0.09, T:0.17
Consensus pattern (16 bp):
AAATAAAGAAAATTAA
Found at i:165057175 original size:17 final size:17
Alignment explanation
Indices: 165057093--165057181 Score: 60
Period size: 17 Copynumber: 5.1 Consensus size: 17
165057083 TGTAAAAAAG
*
165057093 AAATAAAGAA-AATTAA
1 AAATAAAGAATAAATAA
165057109 AAATAAAG-A-AAATGAA
1 AAATAAAGAATAAAT-AA
*
165057125 AACACTAAAAGAAGAAATTTAA
1 AA-A-T-AAAGAATAAA--TAA
*
165057147 AAATAAAGAATAAGTAA
1 AAATAAAGAATAAATAA
165057164 AAATAATA-AATAAATAA
1 AAATAA-AGAATAAATAA
165057181 A
1 A
165057182 TGGAAATTAG
Statistics
Matches: 60, Mismatches: 4, Indels: 17
0.74 0.05 0.21
Matches are distributed among these distances:
15 4 0.07
16 12 0.20
17 19 0.32
18 2 0.03
19 12 0.20
20 2 0.03
21 4 0.07
22 4 0.07
23 1 0.02
ACGTcount: A:0.72, C:0.02, G:0.08, T:0.18
Consensus pattern (17 bp):
AAATAAAGAATAAATAA
Found at i:165057674 original size:16 final size:15
Alignment explanation
Indices: 165057654--165057736 Score: 59
Period size: 16 Copynumber: 5.7 Consensus size: 15
165057644 ATTAAGCCCC
165057654 CCAAAAAAAACCTAA
1 CCAAAAAAAACCTAA
*
165057669 CCCAAAAAAAAAC-AA
1 -CCAAAAAAAACCTAA
** **
165057684 AGAAAAAAAA-AGAA
1 CCAAAAAAAACCTAA
165057698 --AAAGAAAAACCT-A
1 CCAAA-AAAAACCTAA
165057711 CCAAAAAAAACCTAA
1 CCAAAAAAAACCTAA
165057726 CCCAAAAAAAA
1 -CCAAAAAAAA
165057737 AAAGAAGAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
12 3 0.06
13 6 0.11
14 18 0.33
15 6 0.11
16 21 0.39
ACGTcount: A:0.72, C:0.20, G:0.04, T:0.04
Consensus pattern (15 bp):
CCAAAAAAAACCTAA
Found at i:165060325 original size:12 final size:12
Alignment explanation
Indices: 165060308--165060343 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
165060298 ATTCATTTGA
165060308 CATTCATGCATT
1 CATTCATGCATT
165060320 CATTCATGCATT
1 CATTCATGCATT
*
165060332 CATTCATACATT
1 CATTCATGCATT
165060344 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:165065634 original size:70 final size:69
Alignment explanation
Indices: 165065515--165065937 Score: 403
Period size: 71 Copynumber: 6.2 Consensus size: 69
165065505 GAGTTAAGCC
*
165065515 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
165065579 TGAGGTA
63 TGAGGTA
* * ** * *
165065586 TTTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTCAATTTTTGT-TTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTG
165065651 AGGTA
65 AGGTA
* *
165065656 TTTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTCAATTTTTGTTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
165065721 GAGGTA
64 GAGGTA
* * * ** * * *
165065727 TTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT---------TTTA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
165065783 ---A
66 GGTA
*** ** *
165065784 TTTTTGTTTTTCA----AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
165065845 GGTA
66 GGTA
* * *
165065849 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAA-TTTT-TGTTTTAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
165065914 TGAGGTA
63 TGAGGTA
*
165065921 TTTTCAATTTCTGTTTT
1 TTTTCAATTTTTGTTTT
165065938 CAATTTACGT
Statistics
Matches: 285, Mismatches: 44, Indels: 47
0.76 0.12 0.12
Matches are distributed among these distances:
53 31 0.11
57 9 0.03
60 2 0.01
62 2 0.01
65 5 0.02
66 4 0.01
69 34 0.12
70 64 0.22
71 70 0.25
72 64 0.22
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.39
Consensus pattern (69 bp):
TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
GGTA
Found at i:165065823 original size:122 final size:124
Alignment explanation
Indices: 165065657--165065903 Score: 392
Period size: 122 Copynumber: 2.0 Consensus size: 124
165065647 GTTGAGGTAT
165065657 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
* *
165065722 AGGTATTTT-TA-GTTTATGTTTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCC
66 AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
* *
165065778 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
* * * *
165065843 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 GAGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
165065903 T
1 T
165065904 CAGGTCACGC
Statistics
Matches: 114, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
121 12 0.11
122 60 0.53
123 1 0.01
124 13 0.11
125 28 0.25
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (124 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:165065868 original size:263 final size:257
Alignment explanation
Indices: 165065348--165065940 Score: 1042
Period size: 263 Copynumber: 2.3 Consensus size: 257
165065338 TTTCAAGGAA
*
165065348 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
165065413 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
165065478 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
131 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
165065543 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
196 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
165065605 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
*
165065670 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTA---TT--T
165065735 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
126 TTA-GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
165065800 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
190 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
165065865 TTT
255 TTT
* * * * * *
165065868 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AA--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
165065933 GTTTTCAA
64 GTTTTCAA
165065941 TTTACGTTGT
Statistics
Matches: 320, Mismatches: 8, Indels: 8
0.95 0.02 0.02
Matches are distributed among these distances:
257 120 0.38
260 2 0.01
262 4 0.01
263 131 0.41
265 63 0.20
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (257 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
Found at i:165065899 original size:72 final size:71
Alignment explanation
Indices: 165065778--165065943 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
165065768 GAGTTAAGCC
** * *
165065778 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
165065842 TGAGGTA
65 TGAGGTA
*
165065849 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
165065914 TGAGGTA
65 TGAGGTA
* *
165065921 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
165065944 ACGTTGTTCA
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:165066107 original size:70 final size:71
Alignment explanation
Indices: 165066004--165066241 Score: 257
Period size: 86 Copynumber: 3.1 Consensus size: 71
165065994 ATTTCTACTT
165066004 TTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
165066068 TTTCTG
66 TTTCTG
* * *
165066074 TTTCAAAAATCAACTC-TATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGC-GAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTAATTTC
165066137 AATTTCCGTTTTTCAATTTTG
64 AA--------TTTC-----TG
165066158 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTC
1 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA-TTTC
165066223 AATTTCTG
64 AATTTCTG
165066231 TTGTTCAAAAA
1 -T-TTCAAAAA
165066242 ANNNNNNNNN
Statistics
Matches: 140, Mismatches: 6, Indels: 40
0.75 0.03 0.22
Matches are distributed among these distances:
70 30 0.21
71 23 0.16
72 6 0.04
73 2 0.01
74 6 0.04
75 3 0.02
78 4 0.03
79 4 0.03
84 12 0.09
85 18 0.13
86 32 0.23
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.32
Consensus pattern (71 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
TTTCTG
Found at i:165066139 original size:71 final size:70
Alignment explanation
Indices: 165066004--165066147 Score: 211
Period size: 71 Copynumber: 2.0 Consensus size: 70
165065994 ATTTCTACTT
*
165066004 TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
1 TTTCAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
*
165066069 TTCTG
66 TTCCG
* *
165066074 TTTCAAAAATCAACTC-TATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGC-GAGGTATTTTC
1 TTTC-AAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--ACACGCTGAGGTAATTTC
165066137 AATTTCCG
63 AATTTCCG
165066145 TTT
1 TTT
165066148 TTCAATTTTG
Statistics
Matches: 67, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
70 30 0.45
71 31 0.46
72 6 0.09
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.31
Consensus pattern (70 bp):
TTTCAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
TTCCG
Found at i:165066152 original size:212 final size:209
Alignment explanation
Indices: 165065750--165066199 Score: 624
Period size: 212 Copynumber: 2.1 Consensus size: 209
165065740 TTTTAAATTG
** *
165065750 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCT
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTTCAAAATCAACTCATATTGCG
* * * * ** **
165065815 AGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCA
66 AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTGTTCAAAAATCAACTCA
* *
165065880 TATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTA
131 TATTGCGAGAGGCGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCCGTTTTCAATTT-
*
165065945 CGTTGTTC-AAGAATCA
195 CG-T-TTCAAAAAATCA
165065961 ACTCATATTGCGAGAGGT-AGGTTGAA-CCTTTTAATTTCTACTTTTTCAAAATCAACTCATATT
1 ACTCATATTGCGAGAGGTGA-GTT-AAGCCTTTTAATTT-TACTTTTTCAAAATCAACTCATATT
165066024 GCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT-TTCAAAAATCAAC
63 GCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTGTTCAAAAATCAAC
*
165066088 TC-TATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGC-GAGGTATTTTCAATTTCCGTTTTTC
128 TCATATTGCGAGAGGCGAGTTGAGCCTCAGGT--CACGCTGAGGTATTTTCAATTTCCG-TTTTC
*
165066151 AATTTTGTTTCAAAAAATCA
190 AATTTCGTTTCAAAAAATCA
*
165066171 ACTCATATTGCGAGAGGTGAGTTGAGCCT
1 ACTCATATTGCGAGAGGTGAGTTAAGCCT
165066200 CAGGACACGC
Statistics
Matches: 213, Mismatches: 17, Indels: 19
0.86 0.07 0.08
Matches are distributed among these distances:
209 4 0.02
210 60 0.28
211 63 0.30
212 86 0.40
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (209 bp):
ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTTCAAAATCAACTCATATTGCG
AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTGTTCAAAAATCAACTCA
TATTGCGAGAGGCGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCCGTTTTCAATTTC
GTTTCAAAAAATCA
Found at i:165066215 original size:85 final size:85
Alignment explanation
Indices: 165066062--165066238 Score: 261
Period size: 86 Copynumber: 2.1 Consensus size: 85
165066052 GCTGAGGTAA
*
165066062 TTTCAATTTCTGTTTCAAAAATCAACTCTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCG
1 TTTCAATTTCTGTTTCAAAAATCAACTCTATTGCGAGAGGCGAGTTGAGCCTCAGG-CACACGCG
165066127 AGGT-ATTTTCAATTTCCGTT
65 AGGTAATTTTCAATTTCCGTT
*
165066147 TTTCAATTT-TGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGC
1 TTTCAATTTCTGTTTC-AAAAATCAACTC-TATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGC
*
165066210 TGAGGTAATTTTCAATTTCTGTT
64 -GAGGTAATTTTCAATTTCCGTT
*
165066233 GTTCAA
1 TTTCAA
165066239 AAAANNNNNN
Statistics
Matches: 84, Mismatches: 4, Indels: 7
0.88 0.04 0.07
Matches are distributed among these distances:
84 12 0.14
85 26 0.31
86 46 0.55
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.36
Consensus pattern (85 bp):
TTTCAATTTCTGTTTCAAAAATCAACTCTATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCGA
GGTAATTTTCAATTTCCGTT
Found at i:165069260 original size:38 final size:38
Alignment explanation
Indices: 165069195--165069343 Score: 230
Period size: 38 Copynumber: 3.9 Consensus size: 38
165069185 TATGGTAACC
* *
165069195 CGCACAA-AGCCTTCGGGACTTAACCCGGATATCACAAT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAAT
*
165069233 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA-T
165069272 CGCAC-ATTGCCTTCGGGCTTAGCCCGGATATCACAAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT
*
165069309 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
165069344 TCGAACATTC
Statistics
Matches: 103, Mismatches: 5, Indels: 6
0.90 0.04 0.05
Matches are distributed among these distances:
37 5 0.05
38 83 0.81
39 15 0.15
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (38 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT
Found at i:165069317 original size:76 final size:77
Alignment explanation
Indices: 165069164--165069342 Score: 261
Period size: 76 Copynumber: 2.3 Consensus size: 77
165069154 TCGTTCAAAC
* * **
165069164 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGCCTTCGGGACTTAACCCGGATATCA
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGCCTTCGGGACTTAACCCGGATATCA
165069229 CAATCGCACAATT
65 CAATCGCACAATT
* ** *
165069242 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACATTGCCTTCGGG-CTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGCCTTCGGGACTTAACCCGGATATCAC
*
165069306 AATTGCACAATT
66 AATCGCACAATT
165069318 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
165069343 CTCGAACATT
Statistics
Matches: 92, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
76 52 0.57
77 31 0.34
78 9 0.10
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.23
Consensus pattern (77 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGCCTTCGGGACTTAACCCGGATATCAC
AATCGCACAATT
Found at i:165077182 original size:39 final size:39
Alignment explanation
Indices: 165077079--165077210 Score: 165
Period size: 39 Copynumber: 3.4 Consensus size: 39
165077069 CTTCAGGACA
* ** * **
165077079 TAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACT
1 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CT
* * * *
165077119 TAACCCGGATATCACAATTTGCACAATTGCCTTCGGGCT
1 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCT
165077158 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCT
1 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCT
165077197 TAGCCCGGATATCA
1 TAGCCCGGATATCA
165077211 CTCGAACATT
Statistics
Matches: 78, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
39 51 0.65
40 27 0.35
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (39 bp):
TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCT
Found at i:165085768 original size:29 final size:29
Alignment explanation
Indices: 165085706--165085808 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
165085696 GTGACGAGAT
* * *
165085706 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
165085735 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
165085764 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
165085793 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
165085809 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:165089599 original size:37 final size:38
Alignment explanation
Indices: 165089549--165089625 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
165089539 AATTGTTTGA
165089549 AAAAGCATGAACAAC-TATTTAAATGGCTCTCATATGC
1 AAAAGCATGAACAACTTATTTAAATGGCTCTCATATGC
165089586 AAAAGCATGAACAACTTATTTAAATGGCTCTCATATGC
1 AAAAGCATGAACAACTTATTTAAATGGCTCTCATATGC
165089624 AA
1 AA
165089626 TTAGTTGGAG
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
37 15 0.38
38 24 0.62
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (38 bp):
AAAAGCATGAACAACTTATTTAAATGGCTCTCATATGC
Found at i:165089973 original size:20 final size:20
Alignment explanation
Indices: 165089950--165090001 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
165089940 AGTACTGTTT
165089950 TATCAATACTTTTTAAAAAA
1 TATCAATACTTTTTAAAAAA
* * *
165089970 TATCAGTACTCATTTAAAAAG
1 TATCAATACT-TTTTAAAAAA
*
165089991 TATCGATACTT
1 TATCAATACTT
165090002 GTTGTGTTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.38
Consensus pattern (20 bp):
TATCAATACTTTTTAAAAAA
Found at i:165098649 original size:25 final size:26
Alignment explanation
Indices: 165098610--165098717 Score: 175
Period size: 25 Copynumber: 4.2 Consensus size: 26
165098600 CATGAAATTC
165098610 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
165098636 TTATCAT-AAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
165098661 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
165098687 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
165098712 TTATCA
1 TTATCA
165098718 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
25 48 0.61
26 31 0.39
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:165098690 original size:51 final size:51
Alignment explanation
Indices: 165098610--165098717 Score: 180
Period size: 51 Copynumber: 2.1 Consensus size: 51
165098600 CATGAAATTC
165098610 TTATCATGAAACATTTACCTAACCCATTATCATAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCATTATCATAAACATTTACCTAACCCA
* * * *
165098661 TTATCATGGAACATTTACCTAACCTATTATCATGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCATTATCATAAACATTTACCTAACCCA
165098712 TTATCA
1 TTATCA
165098718 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.34
Consensus pattern (51 bp):
TTATCATGAAACATTTACCTAACCCATTATCATAAACATTTACCTAACCCA
Found at i:165102646 original size:135 final size:136
Alignment explanation
Indices: 165102404--165102687 Score: 534
Period size: 135 Copynumber: 2.1 Consensus size: 136
165102394 TATTGGGCCT
**
165102404 AAGCCCATTCAGGTAACAGTGGTACTGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTA
1 AAGCCCATTTGGGTAACAGTGGTACTGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTA
165102469 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGT-AAC
66 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
165102533 ATATGC
131 ATATGC
*
165102539 AAGCCCATTTGGGTAACAGTGGTACTGGGCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTA
1 AAGCCCATTTGGGTAACAGTGGTACTGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTA
165102604 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
66 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
165102669 ATATGC
131 ATATGC
165102675 AAGCCCATTTGGG
1 AAGCCCATTTGGG
165102688 GAGACTACTC
Statistics
Matches: 145, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
135 123 0.85
136 22 0.15
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTA
GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
ATATGC
Found at i:165104563 original size:25 final size:26
Alignment explanation
Indices: 165104469--165104577 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
165104459 ACATGAATTC
165104469 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
165104495 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
165104521 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
165104547 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
165104572 TTATCA
1 TTATCA
165104578 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 23 0.28
26 58 0.72
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:165107360 original size:21 final size:22
Alignment explanation
Indices: 165107313--165107360 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
165107303 AGGGTTTCAG
*
165107313 TACAGATAATTCAGGAAAATAT
1 TACAGAAAATTCAGGAAAATAT
165107335 T-CAGAAAATTCA-G-AAATACT
1 TACAGAAAATTCAGGAAAATA-T
165107355 TACAGA
1 TACAGA
165107361 CTTGAGCCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 5 0.22
20 3 0.13
21 14 0.61
22 1 0.04
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.25
Consensus pattern (22 bp):
TACAGAAAATTCAGGAAAATAT
Found at i:165108474 original size:136 final size:137
Alignment explanation
Indices: 165108222--165108507 Score: 547
Period size: 136 Copynumber: 2.1 Consensus size: 137
165108212 TATTGGGCCT
**
165108222 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
165108287 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
165108352 CATATGC
131 CATATGC
165108359 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACT-GGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
165108423 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
165108488 CATATGC
131 CATATGC
165108495 AAGCCCATTTGGG
1 AAGCCCATTTGGG
165108508 GAGACTACTC
Statistics
Matches: 147, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
136 91 0.62
137 56 0.38
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:165108792 original size:25 final size:26
Alignment explanation
Indices: 165108755--165108806 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
165108745 TCAAACATGC
*
165108755 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACACTAGGGGT
* *
165108781 ATTTCGGT-AATTTATCACTAGGGGT
1 ATTTAGGTCAATTTAACACTAGGGGT
165108806 A
1 A
165108807 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACACTAGGGGT
Found at i:165110346 original size:49 final size:51
Alignment explanation
Indices: 165110290--165110395 Score: 173
Period size: 49 Copynumber: 2.1 Consensus size: 51
165110280 ACATGAATTC
165110290 TTATCATGAAACATTTACCTAACCCAT-TATCATGAACA-TTACCTAACC-A
1 TTATCATG-AACATTTACCTAACCCATATATCATGAACATTTACCTAACCTA
*
165110339 TTATCATGAACATTTACCTAACCTATATATCATGAACATTTACCTAACCTA
1 TTATCATGAACATTTACCTAACCCATATATCATGAACATTTACCTAACCTA
165110390 TTATCA
1 TTATCA
165110396 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
48 17 0.32
49 19 0.36
50 10 0.19
51 7 0.13
ACGTcount: A:0.38, C:0.25, G:0.04, T:0.34
Consensus pattern (51 bp):
TTATCATGAACATTTACCTAACCCATATATCATGAACATTTACCTAACCTA
Found at i:165110375 original size:26 final size:25
Alignment explanation
Indices: 165110290--165110395 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 25
165110280 ACATGAATTC
*
165110290 TTATCATGAAACATTTACCTAACCCA
1 TTATCATG-AACATTTACCTAACCTA
165110316 TTATCATGAACA-TTACCTAACC-A
1 TTATCATGAACATTTACCTAACCTA
165110339 TTATCATGAACATTTACCTAACCTA
1 TTATCATGAACATTTACCTAACCTA
165110364 TATATCATGAACATTTACCTAACCTA
1 T-TATCATGAACATTTACCTAACCTA
165110390 TTATCA
1 TTATCA
165110396 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 0, Indels: 7
0.92 0.00 0.08
Matches are distributed among these distances:
23 13 0.17
24 20 0.26
25 11 0.14
26 33 0.43
ACGTcount: A:0.38, C:0.25, G:0.04, T:0.34
Consensus pattern (25 bp):
TTATCATGAACATTTACCTAACCTA
Found at i:165114423 original size:40 final size:39
Alignment explanation
Indices: 165114378--165114585 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
165114368 CGGAATACAA
*
165114378 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
165114418 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
165114458 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
165114498 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
165114538 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
165114578 CCGGATAT
1 CCGGATAT
165114586 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:165114518 original size:80 final size:81
Alignment explanation
Indices: 165114378--165114583 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
165114368 CGGAATACAA
* * *
165114378 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
165114442 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
165114458 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
165114521 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
165114538 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
165114584 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:165122443 original size:40 final size:40
Alignment explanation
Indices: 165122398--165122604 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 40
165122388 CGGAATACAA
*
165122398 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
165122438 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
165122478 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
165122518 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
** * ** * *
165122558 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTA-C
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
165122597 CCGGATAT
1 CCGGATAT
165122605 CATTCAATTG
Statistics
Matches: 143, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 11 0.08
40 130 0.91
41 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:165126058 original size:23 final size:22
Alignment explanation
Indices: 165126019--165126063 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
165126009 CTATTCCTAA
165126019 GGTTCAAACGGGATTTTTCCTC
1 GGTTCAAACGGGATTTTTCCTC
165126041 GGTTCAAACGGGATTTTTCCTC
1 GGTTCAAACGGGATTTTTCCTC
165126063 G
1 G
165126064 CCTATTAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (22 bp):
GGTTCAAACGGGATTTTTCCTC
Found at i:165130511 original size:49 final size:49
Alignment explanation
Indices: 165130340--165130564 Score: 261
Period size: 49 Copynumber: 4.5 Consensus size: 49
165130330 TGAGGTCGCA
* * ** * *
165130340 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACG
* * **
165130391 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
* *
165130441 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGCCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* * *
165130490 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* * *
165130539 TTTATAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
165130565 TGCATACCAG
Statistics
Matches: 150, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
49 74 0.49
50 44 0.29
51 32 0.21
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:165130520 original size:99 final size:101
Alignment explanation
Indices: 165130340--165130564 Score: 285
Period size: 99 Copynumber: 2.3 Consensus size: 101
165130330 TGAGGTCGCA
* *
165130340 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAAACTGTGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAAAAACTGTGACCACGTGTGTAGTACTAAG
165130405 TGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
66 TGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
* * ** * *
165130441 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAA-T-TGGCCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAAAAACTGTGACCACGTGTGTAGTACTAAG
* ** * *
165130504 TGCAGGCTACTACGTGTATCGGATAATT-GGTCGCA
66 TGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
* * *
165130539 TTTATAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
165130565 TGCATACCAG
Statistics
Matches: 107, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
98 27 0.25
99 45 0.42
100 1 0.01
101 34 0.32
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAAAAACTGTGACCACGTGTGTAGTACTAAG
TGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
Found at i:165136118 original size:24 final size:24
Alignment explanation
Indices: 165136065--165136111 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
165136055 TCGATATAAA
165136065 TCAGCTTGTAAGAGCTTACTGTTC
1 TCAGCTTGTAAGAGCTTACTGTTC
* *
165136089 TCAGCTTGTCAGAGCTTATTGTT
1 TCAGCTTGTAAGAGCTTACTGTT
165136112 TCTAGCTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.40
Consensus pattern (24 bp):
TCAGCTTGTAAGAGCTTACTGTTC
Found at i:165137814 original size:49 final size:50
Alignment explanation
Indices: 165137733--165137978 Score: 282
Period size: 49 Copynumber: 5.0 Consensus size: 50
165137723 TTCTATTGTG
* * *
165137733 AGGTCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
165137783 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * **
165137833 CGATCACGTGTGTAGTACTAAGTGCAGGTTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
165137883 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
165137933 -GGTCGCATGTGTAGTACTAAGTACAGG-TACTATGCGTACCAGATAA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
165137979 CCTTGTCTAC
Statistics
Matches: 164, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
48 16 0.10
49 64 0.39
50 47 0.29
51 37 0.23
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:165137870 original size:28 final size:27
Alignment explanation
Indices: 165137838--165137921 Score: 72
Period size: 28 Copynumber: 3.2 Consensus size: 27
165137828 AACTTCGATC
165137838 ACGTGTGTAGTACTAAGTGCAGGTTACT
1 ACGTGTGTAGTACTAAGTGCAGG-TACT
* * *
165137866 ACGTGTATCAG-A-T-GGT-TAGGT-C-
1 ACGTGTGT-AGTACTAAGTGCAGGTACT
165137888 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGG-TACT
165137916 ACGTGT
1 ACGTGT
165137922 ACCAAATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (27 bp):
ACGTGTGTAGTACTAAGTGCAGGTACT
Found at i:165137995 original size:101 final size:100
Alignment explanation
Indices: 165137736--165137976 Score: 236
Period size: 100 Copynumber: 2.4 Consensus size: 100
165137726 TATTGTGAGG
* * * * * * ** * * *
165137736 TCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTACAGGTTACTACGCGTACCAGATCCTTAGTCACGTGTGTAGTACT
* *
165137801 AAGTGCAGGCTACTATGCGTACCAGACAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCAAACAACTTCGA
* * * * **
165137836 TCACGTGTGTAGTACTAAGTGCAGGTTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTACAGGTTACTACGCGTACCAGATCCTTA-GTCACGTGTGTAGTAC
* * *
165137901 TAAGTGCAGGCTACTACGTGTACCAAATAA-TT-GG
65 TAAGTGCAGGCTACTACGCGTACCAAACAACTTCGA
* *
165137935 TCGCATGTGTAGTACTAAGTACAGG-TACTATGCGTACCAGAT
1 TCACATGTGTAGTACTAAGTACAGGTTACTACGCGTACCAGAT
165137977 AACCTTGTCT
Statistics
Matches: 120, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
98 14 0.12
99 23 0.19
100 43 0.36
101 40 0.33
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTACAGGTTACTACGCGTACCAGATCCTTAGTCACGTGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCAAACAACTTCGA
Found at i:165156132 original size:2 final size:2
Alignment explanation
Indices: 165156120--165156151 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
165156110 TGATGGTCGA
*
165156120 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
165156152 CAACTATGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:165163222 original size:27 final size:28
Alignment explanation
Indices: 165163192--165163290 Score: 119
Period size: 29 Copynumber: 3.5 Consensus size: 28
165163182 ATAGTGAATC
*
165163192 CGCACACTTAGTGCTATA-AAATCAGCT
1 CGCACACTTAGTGCTATATAATTCAGCT
* *
165163219 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGCTATATAA-TTCAGCT
* *
165163248 CGCACACTTAGTGCCATATATTTCCAGCT
1 CGCACACTTAGTGCTATATAATT-CAGCT
*
165163277 TGCACACTTAGTGC
1 CGCACACTTAGTGC
165163291 CATTCTCGTC
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
27 17 0.28
28 4 0.07
29 40 0.66
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATTCAGCT
Done.