Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 534 of 770
Found at i:165953736 original size:40 final size:40
Alignment explanation
Indices: 165953691--165953858 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
165953681 CGGAATACAA
*
165953691 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
165953731 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* **
165953771 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
165953811 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTATTAGC
165953851 CCGGATAT
1 CCGGATAT
165953859 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
Found at i:165953831 original size:80 final size:80
Alignment explanation
Indices: 165953691--165953858 Score: 232
Period size: 80 Copynumber: 2.1 Consensus size: 80
165953681 CGGAATACAA
* * *
165953691 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
*
165953756 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
165953771 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACG--ACTAGCACAAA
*
165953834 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
165953851 CCGGATAT
1 CCGGATAT
165953859 CATTCAATTG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 75 0.96
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:165961441 original size:40 final size:40
Alignment explanation
Indices: 165961396--165961563 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
165961386 CGGAATACAA
*
165961396 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
165961436 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* **
165961476 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
165961516 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTATTAGC
165961556 CCGGATAT
1 CCGGATAT
165961564 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
Found at i:165961536 original size:80 final size:80
Alignment explanation
Indices: 165961396--165961563 Score: 232
Period size: 80 Copynumber: 2.1 Consensus size: 80
165961386 CGGAATACAA
* * *
165961396 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
*
165961461 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
165961476 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACG--ACTAGCACAAA
*
165961539 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
165961556 CCGGATAT
1 CCGGATAT
165961564 CATTCAATTG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 75 0.96
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:165965450 original size:47 final size:47
Alignment explanation
Indices: 165965398--165965636 Score: 374
Period size: 47 Copynumber: 5.1 Consensus size: 47
165965388 TTAGGATTTT
*
165965398 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
165965445 TTGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
165965492 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
165965539 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
165965586 ATGTGGTGAATATGAACATGC--ATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
165965631 ATGTGA
1 ATGTGA
165965637 AATATATATA
Statistics
Matches: 178, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 25 0.14
47 153 0.86
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:165965545 original size:22 final size:22
Alignment explanation
Indices: 165965470--165965545 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
165965460 GCATGCATAT
*
165965470 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCTGAATGGCCA
* *
165965492 ATGTGATGAATG-TGAGCAT-GCATA
1 ATGTGAT-AAGGCTGA--ATGGC-CA
165965516 TATGTGATAAGGCTGAATGGCCA
1 -ATGTGATAAGGCTGAATGGCCA
165965539 ATGTGAT
1 ATGTGAT
165965546 GAATGTGAGC
Statistics
Matches: 42, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 16 0.38
23 8 0.19
24 8 0.19
25 10 0.24
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCTGAATGGCCA
Found at i:165965668 original size:50 final size:50
Alignment explanation
Indices: 165965595--165965741 Score: 226
Period size: 50 Copynumber: 3.0 Consensus size: 50
165965585 AATGTGGTGA
*
165965595 ATATGA-ACATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
* *
165965644 ATATGAGATATGCATATGTGGTAAAGCCAAAAGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
* *
165965694 ATATGAGATATGTATATGTGGTAAAGCCGAATGG-CTAGTGTGAAATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTC-AATGTGAAATAT
165965742 GTAGGCGATG
Statistics
Matches: 89, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
49 7 0.08
50 82 0.92
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (50 bp):
ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
Found at i:165965796 original size:14 final size:14
Alignment explanation
Indices: 165965777--165965805 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
165965767 CGATTACCTA
165965777 AGTCAATTTTCTTT
1 AGTCAATTTTCTTT
165965791 AGTCAATTTTCTTT
1 AGTCAATTTTCTTT
165965805 A
1 A
165965806 ATTACGCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.14, G:0.07, T:0.55
Consensus pattern (14 bp):
AGTCAATTTTCTTT
Found at i:165973272 original size:40 final size:40
Alignment explanation
Indices: 165973227--165973394 Score: 189
Period size: 40 Copynumber: 4.2 Consensus size: 40
165973217 CGGAATACAA
* *
165973227 CCGGATATAACCACACGCATGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
165973267 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* **
165973307 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
165973347 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTATTAGC
165973387 CCGGATAT
1 CCGGATAT
165973395 CATTCAATTG
Statistics
Matches: 111, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 107 0.96
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
Found at i:165973367 original size:80 final size:80
Alignment explanation
Indices: 165973227--165973394 Score: 223
Period size: 80 Copynumber: 2.1 Consensus size: 80
165973217 CGGAATACAA
* * * *
165973227 CCGGATATAACCACACGCATGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
*
165973292 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
165973307 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACG--ACTAGCACAAA
*
165973370 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
165973387 CCGGATAT
1 CCGGATAT
165973395 CATTCAATTG
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 74 0.96
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:165977283 original size:47 final size:47
Alignment explanation
Indices: 165977231--165977469 Score: 367
Period size: 47 Copynumber: 5.1 Consensus size: 47
165977221 TTAGGATTTT
*
165977231 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
165977278 TTGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
165977325 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
165977372 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
165977419 ATGTGGTGAATATG-GACATGC--ATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAG-CATGCATATATGTGATAAGGCCGAATGGCCA
165977464 ATGTGA
1 ATGTGA
165977470 AATATATATA
Statistics
Matches: 178, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
45 25 0.14
46 1 0.01
47 152 0.85
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:165977378 original size:22 final size:22
Alignment explanation
Indices: 165977303--165977378 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
165977293 GCATGCATAT
*
165977303 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCTGAATGGCCA
* *
165977325 ATGTGATGAATG-TGAGCAT-GCATA
1 ATGTGAT-AAGGCTGA--ATGGC-CA
165977349 TATGTGATAAGGCTGAATGGCCA
1 -ATGTGATAAGGCTGAATGGCCA
165977372 ATGTGAT
1 ATGTGAT
165977379 GAATGTGAGC
Statistics
Matches: 42, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 16 0.38
23 8 0.19
24 8 0.19
25 10 0.24
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCTGAATGGCCA
Found at i:165977501 original size:50 final size:50
Alignment explanation
Indices: 165977428--165977574 Score: 226
Period size: 50 Copynumber: 3.0 Consensus size: 50
165977418 AATGTGGTGA
*
165977428 ATATG-GACATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
* *
165977477 ATATGAGATATGCATATGTGGTAAAGCCAAAAGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
* *
165977527 ATATGAGATATGTATATGTGGTAAAGCCGAATGG-CTAGTGTGAAATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTC-AATGTGAAATAT
165977575 GTAGGCGATG
Statistics
Matches: 89, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
49 6 0.07
50 83 0.93
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.29
Consensus pattern (50 bp):
ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
Found at i:165977774 original size:37 final size:37
Alignment explanation
Indices: 165977724--165977831 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
165977714 GGAAATATAT
165977724 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
165977761 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
165977798 TCTGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
165977832 TCGTCTGAGC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:165979831 original size:79 final size:80
Alignment explanation
Indices: 165979691--165979842 Score: 193
Period size: 79 Copynumber: 1.9 Consensus size: 80
165979681 TCGAATGATG
* * *
165979691 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
*
165979756 GTGCGAGTTAATAAA
66 GAGCGAGTTAATAAA
* **
165979771 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
165979833 TTGAGCGAGT
64 TCGAGCGAGT
165979843 CGTTATATCC
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 43 0.69
80 18 0.29
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GAGCGAGTTAATAAA
Found at i:165979834 original size:40 final size:40
Alignment explanation
Indices: 165979691--165979835 Score: 170
Period size: 40 Copynumber: 3.6 Consensus size: 40
165979681 TCGAATGATG
* *
165979691 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * * *
165979731 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
165979771 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* *
165979810 CCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
165979836 AGCGAGTCGT
Statistics
Matches: 87, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
39 33 0.38
40 47 0.54
41 7 0.08
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:165985198 original size:40 final size:39
Alignment explanation
Indices: 165985154--165985346 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
165985144 GTTCAAAACA
* * ** * *
165985154 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
165985194 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
165985234 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
165985273 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
165985312 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
165985347 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:165985265 original size:39 final size:39
Alignment explanation
Indices: 165985184--165985346 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
165985174 TATGGTAACC
* *
165985184 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
165985224 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
165985263 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
165985302 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
165985341 CGCACA
1 CGCACA
165985347 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:165992978 original size:40 final size:40
Alignment explanation
Indices: 165992934--165993079 Score: 179
Period size: 39 Copynumber: 3.7 Consensus size: 40
165992924 GTTCAAAACA
* * ***
165992934 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * *
165992974 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
** *
165993014 CCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
165993053 CCTTCGGG-CTTAGCCCGGATATCACAA
1 CCTTCGGGACTTAGCCCGGATATCACAA
165993080 TTCGCACATT
Statistics
Matches: 96, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 56 0.58
40 40 0.42
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
Found at i:165993046 original size:39 final size:39
Alignment explanation
Indices: 165992964--165993087 Score: 212
Period size: 39 Copynumber: 3.2 Consensus size: 39
165992954 TATGGTAACC
* * *
165992964 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
165993004 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
165993043 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
165993082 CGCACA
1 CGCACA
165993088 TTCATTCACA
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 64 0.79
40 17 0.21
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:165994693 original size:31 final size:31
Alignment explanation
Indices: 165994655--165994717 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
165994645 AACTCTAAAT
165994655 CGAAACATCAAAAATGTCACACATGAATTAA
1 CGAAACATCAAAAATGTCACACATGAATTAA
165994686 CGAAACATCAAAAATGTCACACATGAATTAA
1 CGAAACATCAAAAATGTCACACATGAATTAA
165994717 C
1 C
165994718 ACATATTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.51, C:0.21, G:0.10, T:0.19
Consensus pattern (31 bp):
CGAAACATCAAAAATGTCACACATGAATTAA
Found at i:165997314 original size:29 final size:28
Alignment explanation
Indices: 165997280--165997382 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
165997270 TACTCAATCA
*
165997280 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
165997309 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
165997338 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
165997367 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
165997383 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:166005310 original size:29 final size:28
Alignment explanation
Indices: 166005276--166005378 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
166005266 TACTCAATCA
*
166005276 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
166005305 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
166005334 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
166005363 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
166005379 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:166011406 original size:27 final size:27
Alignment explanation
Indices: 166011366--166011531 Score: 172
Period size: 27 Copynumber: 6.1 Consensus size: 27
166011356 AGGAAGCATC
*
166011366 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
166011393 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
*** *
166011420 CTGGTGGCTCTGCCACGGTTATCTAAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* * *
166011447 CTGGTGACTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
166011474 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTG-AT
* * * *
166011502 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
166011528 CTGG
1 CTGG
166011532 CAGCCATGCT
Statistics
Matches: 116, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
26 5 0.04
27 96 0.83
28 15 0.13
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:166011449 original size:54 final size:54
Alignment explanation
Indices: 166011366--166011531 Score: 244
Period size: 54 Copynumber: 3.1 Consensus size: 54
166011356 AGGAAGCATC
* * * * *
166011366 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTAATCTGGTGACTCTGCCACATATATCTGTT
*
166011420 CTGGTGGCTCTGCCACGGTTATCTAATCTGGTGACTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTAATCTGGTGACTCTGCCACATATATCTGTT
* *
166011474 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTCTGCCACGATTATCT-AATCTGGTGACTCTGCCACATATATCTGTT
166011528 CTGG
1 CTGG
166011532 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 83 0.81
55 19 0.19
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACGATTATCTAATCTGGTGACTCTGCCACATATATCTGTT
Found at i:166011531 original size:81 final size:81
Alignment explanation
Indices: 166011366--166011524 Score: 223
Period size: 81 Copynumber: 2.0 Consensus size: 81
166011356 AGGAAGCATC
* *
166011366 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCT
1 CTGGTGACTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGACTCT
*
166011431 GCCACGGTTATCTAAT
66 GCCACGATTATCTAAT
* * *
166011447 CTGGTGACTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGAT-TATCTGTATCTGGTGACT
1 CTGGTGACTATGCCACAAATATCTGATCTGGTGGCTCTGCCAC-ATATATCTGT-TCTGGTGACT
*
166011511 CTGTCAC-ATTATCT
64 CTGCCACGATTATCT
166011525 GTTCTGGCAG
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
81 52 0.75
82 17 0.25
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (81 bp):
CTGGTGACTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGACTCT
GCCACGATTATCTAAT
Found at i:166018436 original size:27 final size:27
Alignment explanation
Indices: 166018396--166018561 Score: 181
Period size: 27 Copynumber: 6.1 Consensus size: 27
166018386 AGGAAGCGTC
*
166018396 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
166018423 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
** *
166018450 CTGGTGGCTCTGCCATGATTATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* * *
166018477 CTGGTGACTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
166018504 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTG-AT
* * * *
166018532 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
166018558 CTGG
1 CTGG
166018562 CAGCCATGCT
Statistics
Matches: 116, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
26 5 0.04
27 96 0.83
28 15 0.13
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:166018478 original size:54 final size:54
Alignment explanation
Indices: 166018396--166018561 Score: 262
Period size: 54 Copynumber: 3.1 Consensus size: 54
166018386 AGGAAGCGTC
* * * *
166018396 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
*
166018450 CTGGTGGCTCTGCCATGATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
*
166018504 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
166018558 CTGG
1 CTGG
166018562 CAGCCATGCT
Statistics
Matches: 104, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
54 85 0.82
55 19 0.18
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACGATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:166018552 original size:81 final size:81
Alignment explanation
Indices: 166018396--166018561 Score: 228
Period size: 81 Copynumber: 2.0 Consensus size: 81
166018386 AGGAAGCGTC
* *
166018396 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCT
1 CTGGTGACTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGACTCT
*
166018461 GCCATGATTATCTGAT
66 GCCATCATTATCTGAT
* * *
166018477 CTGGTGACTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGAT-TATCTGTATCTGGTGACT
1 CTGGTGACTATGCCACAAATATCTGATCTGGTGGCTCTGCCAC-ATATATCTGT-TCTGGTGACT
* *
166018541 CTGTCA-CATTATCTGTT
64 CTGCCATCATTATCTGAT
166018558 CTGG
1 CTGG
166018562 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
81 59 0.79
82 16 0.21
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (81 bp):
CTGGTGACTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGACTCT
GCCATCATTATCTGAT
Found at i:166022198 original size:33 final size:33
Alignment explanation
Indices: 166022155--166022229 Score: 107
Period size: 33 Copynumber: 2.3 Consensus size: 33
166022145 CATAGTCCAA
166022155 CTATGGTCTTA-CAAGTGAATTGCCATAACCCAG
1 CTATGGTCTTATCAAGTGAA-TGCCATAACCCAG
* **
166022188 TTATGGTCTTATCATTTGAATGCCATAACCCAG
1 CTATGGTCTTATCAAGTGAATGCCATAACCCAG
166022221 CTATGGTCT
1 CTATGGTCT
166022230 CACATACAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
33 31 0.84
34 6 0.16
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (33 bp):
CTATGGTCTTATCAAGTGAATGCCATAACCCAG
Found at i:166023803 original size:40 final size:39
Alignment explanation
Indices: 166023739--166023926 Score: 223
Period size: 39 Copynumber: 4.8 Consensus size: 39
166023729 GCTACTCGTT
* * * ** *
166023739 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
166023779 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
*
166023819 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * * * *
166023858 CAATTGCCTTCGGGCTTAGCCCGGATGTCACAATTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
*
166023897 CAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCA
166023927 CTCGAACATT
Statistics
Matches: 132, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 87 0.66
40 45 0.34
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:166023854 original size:39 final size:39
Alignment explanation
Indices: 166023775--166023927 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
166023765 TATGGTAACC
* *
166023775 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
166023815 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
166023854 CGCACAATTGCCTTCGGGCTTAGCCCGGATGTCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
166023893 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
166023928 TCGAACATTT
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:166023905 original size:78 final size:79
Alignment explanation
Indices: 166023744--166023926 Score: 260
Period size: 78 Copynumber: 2.3 Consensus size: 79
166023734 TCGTTCAAAC
* * **
166023744 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
166023809 ACAACTCGCACAATT
65 ACAACTCGCACAATT
* * * *
166023824 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATGTCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
* *
166023888 CAATTTGCACAATT
66 CAACTCGCACAATT
166023902 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
166023927 CTCGAACATT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
78 51 0.55
79 33 0.35
80 9 0.10
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
CAACTCGCACAATT
Found at i:166026573 original size:11 final size:11
Alignment explanation
Indices: 166026557--166026581 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
166026547 TTCTGTAGAT
166026557 ATTAAAATAAA
1 ATTAAAATAAA
166026568 ATTAAAATAAA
1 ATTAAAATAAA
166026579 ATT
1 ATT
166026582 TTTTGACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
ATTAAAATAAA
Found at i:166030466 original size:123 final size:123
Alignment explanation
Indices: 166030247--166030722 Score: 711
Period size: 123 Copynumber: 3.8 Consensus size: 123
166030237 GAATTATGTG
*
166030247 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
166030312 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGCAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGCAACGA
166030370 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
166030435 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGCAACGAAAATGAA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGCAAC------G-A
166030500 ATATGGATGTGTGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATG
1 A-A---A----TGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATG
* *
166030565 GTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAAC-
58 GTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGCAACG
166030629 A
123 A
* * * * *
166030630 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* * *
166030695 GCTAAGTCCTGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
166030723 AATTATATCC
Statistics
Matches: 327, Mismatches: 11, Indels: 31
0.89 0.03 0.08
Matches are distributed among these distances:
122 82 0.25
123 120 0.37
126 1 0.00
129 2 0.01
130 4 0.01
131 1 0.00
134 1 0.00
138 116 0.35
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGCAACGA
Found at i:166030516 original size:15 final size:15
Alignment explanation
Indices: 166030496--166030526 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
166030486 GCAACGAAAA
166030496 TGAAATATGGATGTG
1 TGAAATATGGATGTG
166030511 TGAAATATGGATGTG
1 TGAAATATGGATGTG
166030526 T
1 T
166030527 AATGATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.35
Consensus pattern (15 bp):
TGAAATATGGATGTG
Found at i:166030760 original size:40 final size:40
Alignment explanation
Indices: 166030725--166030934 Score: 287
Period size: 40 Copynumber: 5.2 Consensus size: 40
166030715 ATGCTAGTAA
* * * *
166030725 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TG
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
*
166030764 ACTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
1 -TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
166030805 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
*
166030845 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCG
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
* * * * ** *
166030885 TTATATCCGGGCTAAGACCCGAGGGTATTCGTGCGTGTGG
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
166030925 TTATATCCGG
1 TTATATCCGG
166030935 TTGTATTCCG
Statistics
Matches: 155, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 153 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
Found at i:166037386 original size:123 final size:123
Alignment explanation
Indices: 166037167--166037505 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
166037157 GAATTATGTG
*
166037167 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
166037232 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
166037290 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
166037355 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
166037413 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
166037478 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
166037506 AATTATATCC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:166037529 original size:40 final size:40
Alignment explanation
Indices: 166037474--166037716 Score: 292
Period size: 40 Copynumber: 6.1 Consensus size: 40
166037464 TGAATGATAC
* * * * **
166037474 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
166037514 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
166037554 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
166037594 CCGGGCTAATA-CCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
166037633 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
166037673 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
166037713 CCGG
1 CCGG
166037717 TTGTATTCCG
Statistics
Matches: 180, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 39 0.22
40 139 0.77
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:166037642 original size:79 final size:80
Alignment explanation
Indices: 166037474--166037716 Score: 303
Period size: 79 Copynumber: 3.0 Consensus size: 80
166037464 TGAATGATAC
* * * * * *
166037474 CCGGGCTAAGT-CCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAATT
1 CCGGGCTAA-TACCCGAAGGCATTTGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATTT
* *
166037538 GTGCTAG-TGACTATAT
65 GTGCAAGTTG-TTATAT
* *
166037554 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATATCCGGGCTAATA-CCGAAGGCATTTG
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATTTG
166037618 TGCAAGTTGTTATAT
66 TGCAAGTTGTTATAT
* * *
166037633 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATATCCGGGCTAAGACCCGAGGGCATTCG
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATTTG
** *
166037698 TGCGTGTGGTTATAT
66 TGCAAGTTGTTATAT
166037713 CCGG
1 CCGG
166037717 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
79 72 0.50
80 71 0.50
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (80 bp):
CCGGGCTAATACCCGAAGGCATTTGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATTTG
TGCAAGTTGTTATAT
Found at i:166037710 original size:119 final size:120
Alignment explanation
Indices: 166037474--166037716 Score: 310
Period size: 119 Copynumber: 2.0 Consensus size: 120
166037464 TGAATGATAC
* * *
166037474 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGTACCGAAGACATTTATGCAAGTAATTATATCCGGGCTAAGACCCGAAGGCAATTG
* * * *
166037539 TGCTAGTGACTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
66 TGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
* * ** * *
166037594 CCGGGCTAA-TACCGAAGGCATTTGTGCAAGTTGTTATATCCGGGCTAATACCCGAAGGCATTTG
1 CCGGGCTAAGTACCGAAGACATTTATGCAAGTAATTATATCCGGGCTAAGACCCGAAGGCAATTG
* * **
166037658 TGCAAGTCG-TTATATCCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
66 TGCAAGT-GACTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
166037713 CCGG
1 CCGG
166037717 TTGTATTCCG
Statistics
Matches: 105, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
119 95 0.90
120 10 0.10
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (120 bp):
CCGGGCTAAGTACCGAAGACATTTATGCAAGTAATTATATCCGGGCTAAGACCCGAAGGCAATTG
TGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
Found at i:166040833 original size:29 final size:27
Alignment explanation
Indices: 166040799--166040901 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
166040789 TACTCAATCA
*
166040799 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
166040828 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
166040857 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
166040886 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
166040902 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:166048857 original size:29 final size:27
Alignment explanation
Indices: 166048823--166048925 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
166048813 TACTCAATCA
*
166048823 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
166048852 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
166048881 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
166048910 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
166048926 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:166050705 original size:26 final size:26
Alignment explanation
Indices: 166050676--166050728 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
166050666 CTGAGACTGT
*
166050676 AGCTAGGCTACCGTAAAAGGAAACAA
1 AGCTAGGCTACCGCAAAAGGAAACAA
166050702 AGCTAGGCTACCGCAAAAGGAAACAA
1 AGCTAGGCTACCGCAAAAGGAAACAA
166050728 A
1 A
166050729 CTCAAACTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.47, C:0.21, G:0.23, T:0.09
Consensus pattern (26 bp):
AGCTAGGCTACCGCAAAAGGAAACAA
Found at i:166053048 original size:40 final size:39
Alignment explanation
Indices: 166052959--166053142 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 39
166052949 CGAATGATGA
*
166052959 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG--AGAGTTACTA-AT
*
166052999 CCGGACTAAGAT-CCGAAGGCATTTGTGAGAGTTACTAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGAGAGTTACTAAT
* * * *
166053038 CCCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTCACCAAAT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTA-CTAAT
* * *
166053078 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACTA-AT
*
166053118 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
166053143 AATGAGTAGC
Statistics
Matches: 121, Mismatches: 15, Indels: 16
0.80 0.10 0.11
Matches are distributed among these distances:
39 33 0.27
40 81 0.67
41 7 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACTAAT
Found at i:166053094 original size:79 final size:81
Alignment explanation
Indices: 166052958--166053140 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
166052948 TCGAATGATG
* * * *
166052958 ACCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 ACCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACCAAATCCGGACTAAGATCCGAAGGCATT
166053022 TGTGAGAGTTACTA-A
66 TGTGAGAGTTACTATA
* * **
166053037 TCCCGGGCTAAG-CCCGAAGGCATTGGTG-TGAGTCACCAAATCCGGGTTAAG-TCCCGAAGGCA
1 -ACCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACCAAATCCGGACTAAGAT-CCGAAGGCA
*
166053099 TTTGTGCGAGTTACTATA
64 TTTGTGAGAGTTACTATA
*
166053117 ACCGGGCTATGTCCCGAAGGCATT
1 ACCGGGCTAAGTCCCGAAGGCATT
166053141 TGAATGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.67
80 28 0.32
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
ACCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGAGAGTTACTATA
Found at i:166053164 original size:79 final size:78
Alignment explanation
Indices: 166052958--166053175 Score: 203
Period size: 79 Copynumber: 2.7 Consensus size: 78
166052948 TCGAATGATG
** * *
166052958 ACCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCAT
1 ACCGGGCTAAGTCCCGAAGGCATTTG-AATGAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCAT
166053021 TTGTGAGAGTTACTAAT
62 TTGTGAGAGTTACTAAT
* * ** * *
166053038 CCCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTCA-CCAAATCCGGGTTAAGTCCCGAAGGCATT
1 ACCGGGCTAAGTCCCGAAGGCATTTGAATGAGT-AGCTATATCC-GGTTAAGT-CCGAAGGCATT
*
166053101 TGTGCGAGTTACT-AT
63 TGTGAGAGTTACTAAT
* *
166053116 AACCGGGCTATGTCCCGAAGGCATTTGAATGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 -ACCGGGCTAAGTCCCGAAGGCATTTGAATGAGTAGCTATATCCGGTT-AAGTCCGAAGG
166053176 TACGTGATTC
Statistics
Matches: 112, Mismatches: 17, Indels: 19
0.76 0.11 0.13
Matches are distributed among these distances:
78 3 0.03
79 67 0.60
80 42 0.38
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGAATGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGT
GAGAGTTACTAAT
Found at i:166058070 original size:27 final size:26
Alignment explanation
Indices: 166058026--166058077 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
166058016 CTCGCTGCAA
*
166058026 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
166058053 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
166058078 GCAGCCTCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:166063458 original size:31 final size:31
Alignment explanation
Indices: 166063410--166063494 Score: 136
Period size: 31 Copynumber: 2.8 Consensus size: 31
166063400 TCAATCTCAG
166063410 CATAT-ACTGGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* * *
166063440 CATGTCACTGTGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
166063471 CATATCACTGGGCCGAAGCCTTTA
1 CATATCACTGGGCCGAAGCCTTTA
166063495 TTGTAAACGA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 4 0.08
31 44 0.92
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.33
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:166063741 original size:25 final size:25
Alignment explanation
Indices: 166063713--166063782 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
166063703 CTCTTTTAAT
*
166063713 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
166063738 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
166063763 AACTGGGGCAAAGCTCTTTT
1 AACTGGGGCAAAGCCCTTTT
166063783 GCACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:166063846 original size:11 final size:11
Alignment explanation
Indices: 166063830--166063868 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
166063820 TATATGAATT
166063830 TATCATGTGCA
1 TATCATGTGCA
*
166063841 TATCA--TACA
1 TATCATGTGCA
166063850 TATCATGTGCA
1 TATCATGTGCA
166063861 TATCATGT
1 TATCATGT
166063869 CAAATAATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
9 8 0.33
11 16 0.67
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (11 bp):
TATCATGTGCA
Found at i:166065910 original size:3 final size:3
Alignment explanation
Indices: 166065902--166065947 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
166065892 ATTTAATTAC
166065902 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
166065948 TTTATAAACA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:166068243 original size:25 final size:25
Alignment explanation
Indices: 166068215--166068284 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
166068205 CTCTTTTAAT
*
166068215 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
166068240 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
166068265 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
166068285 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:166068347 original size:11 final size:11
Alignment explanation
Indices: 166068332--166068380 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
166068322 TATATGAATT
*
166068332 TATCATGTGCT
1 TATCATGTGCA
*
166068343 TATCA--TACA
1 TATCATGTGCA
166068352 TATCATGTGCA
1 TATCATGTGCA
166068363 TATCATGT-CA
1 TATCATGTGCA
*
166068373 AATCATGT
1 TATCATGT
166068381 ATACCAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
9 7 0.22
10 9 0.28
11 16 0.50
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (11 bp):
TATCATGTGCA
Found at i:166070505 original size:3 final size:3
Alignment explanation
Indices: 166070497--166070539 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
166070487 ATTTAATTTC
166070497 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
166070540 TTTATAAACA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:166072098 original size:26 final size:26
Alignment explanation
Indices: 166072069--166072176 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
166072059 TGGTACAAAT
166072069 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
166072095 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
166072121 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
166072147 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
166072173 TGAT
1 TGAT
166072177 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:166073831 original size:27 final size:27
Alignment explanation
Indices: 166073808--166073956 Score: 153
Period size: 27 Copynumber: 5.6 Consensus size: 27
166073798 CTAGTGGTTA
166073808 TGCCACAATTATCTGATCTGGTGGCTC
1 TGCCACAATTATCTGATCTGGTGGCTC
* *
166073835 TGCCAC-ATATATCTGTTCTGGTGGCTA
1 TGCCACAAT-TATCTGATCTGGTGGCTC
* *
166073862 TGCCATAAATATCTGATCTGGTGGCTC
1 TGCCACAATTATCTGATCTGGTGGCTC
* * *
166073889 TGCCAC-CTATATCTGTTCTGGTGGCCC
1 TGCCACAAT-TATCTGATCTGGTGGCTC
* *
166073916 TGCCACAA-TATCTGTATCTGGTGACTT
1 TGCCACAATTATCTG-ATCTGGTGGCTC
*
166073943 TGTCACAA-TATCTG
1 TGCCACAATTATCTG
166073957 GCAGCCTCGC
Statistics
Matches: 100, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
26 8 0.08
27 91 0.91
28 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (27 bp):
TGCCACAATTATCTGATCTGGTGGCTC
Found at i:166073888 original size:54 final size:53
Alignment explanation
Indices: 166073801--166073956 Score: 197
Period size: 54 Copynumber: 2.9 Consensus size: 53
166073791 AAGCGTCCTA
* *
166073801 GTGGTTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTATGCCA-AAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
*
166073855 GTGGCTATGCCATAAATATCTGATCTGGTGGCTCTGCCACCTATATCTGTTCTG
1 GTGGCTATGCCA-AAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
** * * * *
166073909 GTGGCCCTGCCACAATATCTGTATCTGGTGACTTTGTCACA-ATATCTG
1 GTGGCTATGCCAAAATATCTG-ATCTGGTGGCTCTGCCACATATATCTG
166073957 GCAGCCTCGC
Statistics
Matches: 90, Mismatches: 11, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
53 15 0.17
54 75 0.83
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (53 bp):
GTGGCTATGCCAAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
Found at i:166076097 original size:40 final size:40
Alignment explanation
Indices: 166075883--166076080 Score: 249
Period size: 40 Copynumber: 5.0 Consensus size: 40
166075873 TCGAATGATG
* * * *
166075883 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
166075923 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
* *
166075963 TCTGGACTAAGATCCGAAGGCAGTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
166076003 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** * *
166076043 TCCGGGTTAAG-TCCCGAAGGCATTTGTGTGAGCTACTA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
166076081 TAACCGGGCT
Statistics
Matches: 141, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 132 0.94
41 8 0.06
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:166090676 original size:40 final size:40
Alignment explanation
Indices: 166090568--166090817 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
166090558 CGGGATTTAA
* * * * *
166090568 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
166090608 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
166090648 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
166090688 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
166090728 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
166090768 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
166090808 CCGGATATAT
1 CCGGATATAT
166090818 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:166099080 original size:47 final size:45
Alignment explanation
Indices: 166099007--166099134 Score: 159
Period size: 47 Copynumber: 2.8 Consensus size: 45
166098997 ATTTGTTTGT
* *
166099007 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGACCACATT-ATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCG-CCA-ATTAACGA
* * *
166099053 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTTAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGCCAATTA-ACGA
166099101 GAGCTAGTGTAAGACATGTCTGGGACATGCATCG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCG
166099135 GCCTCGAGAT
Statistics
Matches: 72, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
46 21 0.29
47 29 0.40
48 22 0.31
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGCCAATTAACGA
Found at i:166099156 original size:46 final size:48
Alignment explanation
Indices: 166099007--166099277 Score: 231
Period size: 46 Copynumber: 5.8 Consensus size: 48
166098997 ATTTGTTTGT
* * * * *
166099007 GAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGACCAC-ATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GATGA
* ** *
166099053 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTTAGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGA
*
166099101 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATG-A
* * *
166099148 -AGTCAGTGTAAGA-CATGTTTGGGACAT-GTATCGG-CTACGAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGA
* * * * * * * *
166099193 TAGTCAATGTAATACCGTGTCTAGGACATGGCAT-GGACTTGAGAT-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGA
*
166099239 TGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGC
1 -GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
166099278 ACCTTACCCA
Statistics
Matches: 184, Mismatches: 30, Indels: 20
0.79 0.13 0.09
Matches are distributed among these distances:
45 3 0.02
46 75 0.41
47 75 0.41
48 30 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGA
Found at i:166099157 original size:94 final size:95
Alignment explanation
Indices: 166099007--166099278 Score: 272
Period size: 94 Copynumber: 2.9 Consensus size: 95
166098997 ATTTGTTTGT
* * *
166099007 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGACCAC-ATTATG-AGAGCCAGTGTAAGACCA
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGA-GATGTA-AGCCAGTGTAAGACCA
**
166099070 TGTCTGGGACATGGCATCGGCAT-TTAGACGA
64 TGTCTGGGACATGGCATCGGCATACGAGACGA
* *
166099101 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGTCAGTGTAAGA-CATG
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGACCATG
* * *
166099165 TTTGGGACAT-GTATCGGC-TACGAGATGA
66 TCTGGGACATGGCATCGGCATACGAGACGA
* * * * * * * * *
166099193 TAG-TCAATGTAATACCGTGTCTAGGACATGGCAT-GGACTTGAGATATGAGCCAATGTAAGACC
1 GAGCT-AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGATGTAAGCCAGTGTAAGACC
166099256 ATGTCTGGGACATGGCATCGGCA
63 ATGTCTGGGACATGGCATCGGCA
166099279 CCTTACCCAC
Statistics
Matches: 146, Mismatches: 23, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
91 2 0.01
92 21 0.14
93 46 0.32
94 68 0.47
95 9 0.06
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (95 bp):
GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCGGCATACGAGACGA
Found at i:166105302 original size:30 final size:30
Alignment explanation
Indices: 166105257--166105316 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
166105247 ATTTAATACG
*
166105257 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
166105287 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
166105317 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:166110555 original size:21 final size:21
Alignment explanation
Indices: 166110531--166110572 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
166110521 TCATCAGATC
*
166110531 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
166110552 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
166110573 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:166115254 original size:19 final size:19
Alignment explanation
Indices: 166115230--166115267 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
166115220 AATTTCTGGA
166115230 AAATGATTTACTTTTCTAG
1 AAATGATTTACTTTTCTAG
166115249 AAATGATTTACTTTTCTAG
1 AAATGATTTACTTTTCTAG
166115268 TGTTTGGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.47
Consensus pattern (19 bp):
AAATGATTTACTTTTCTAG
Found at i:166117213 original size:28 final size:28
Alignment explanation
Indices: 166117148--166117248 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
166117138 ATAGTGAATC
*
166117148 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
166117177 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
166117205 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
166117235 CGCACACTTAGTGC
1 CGCACACTTAGTGC
166117249 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:166125167 original size:28 final size:28
Alignment explanation
Indices: 166125102--166125202 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
166125092 ATAGTGAATC
*
166125102 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
166125131 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
166125159 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
166125189 CGCACACTTAGTGC
1 CGCACACTTAGTGC
166125203 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:166131511 original size:42 final size:41
Alignment explanation
Indices: 166131431--166131580 Score: 162
Period size: 41 Copynumber: 3.6 Consensus size: 41
166131421 GAGCTTGGTC
166131431 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* *
166131472 TCGAAGGGCTTTTTAGAGCCAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGC-TTTT-GAGCCAGTGCTAATAACCGAACTTAGTT
* * * * * *
166131514 CCGAAGGGCCTTCGAGCCAGTAGTCTAAT--CCGAGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGTT
*
166131555 TCGAAGGGCTTTTGAGCCGGTGCTAA
1 TCGAAGGGCTTTTGAGCCAGTGCTAA
166131581 GAGTCGGACT
Statistics
Matches: 90, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
39 4 0.04
40 9 0.10
41 37 0.41
42 28 0.31
43 12 0.13
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:166131563 original size:41 final size:40
Alignment explanation
Indices: 166131411--166131580 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
166131401 GCTAATCGGG
*
166131411 GTCTAAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
* *
166131452 G-CTAATAACCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGT
* *
166131495 GTCATAA-CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGT
1 GTC-TAATCCGAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT
* *
166131535 AGTCTAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCGGT
1 -GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
166131576 G-CTAA
1 GTCTAA
166131581 GAGTCGGACT
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 7 0.07
40 14 0.13
41 50 0.47
42 23 0.21
43 9 0.08
44 1 0.01
45 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:166137040 original size:39 final size:39
Alignment explanation
Indices: 166136986--166137142 Score: 233
Period size: 39 Copynumber: 4.0 Consensus size: 39
166136976 GATGTGTATG
166136986 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
*
166137025 AATGTGTGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
* * *
166137064 ATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
* * * *
166137103 ATTGTGCGAGTTGTGATACCCGGGTTAAGTCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCA
166137143 TTTGTGCGGG
Statistics
Matches: 109, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 99 0.91
40 10 0.09
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (39 bp):
AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
Found at i:166142415 original size:2 final size:2
Alignment explanation
Indices: 166142408--166142435 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
166142398 ATCAAATACT
166142408 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
166142436 AATGCCGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:166142711 original size:2 final size:2
Alignment explanation
Indices: 166142704--166142745 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
166142694 TTCATACTTT
166142704 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
166142746 CCATAGCTGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:166146205 original size:48 final size:48
Alignment explanation
Indices: 166146134--166146279 Score: 265
Period size: 48 Copynumber: 3.0 Consensus size: 48
166146124 CAAGATAAAT
* *
166146134 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
166146182 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
166146230 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
166146278 AT
1 AT
166146280 GTGTGTATAT
Statistics
Matches: 95, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 95 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:166146470 original size:37 final size:37
Alignment explanation
Indices: 166146420--166146522 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
166146410 GGAAATATAT
166146420 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
166146457 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
166146494 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
166146523 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:166148674 original size:31 final size:31
Alignment explanation
Indices: 166148615--166148676 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
166148605 GAGTTTGATC
*
166148615 ATATAGCACTAAGTGTGCGAGCTGAATATAT
1 ATATAGCACTAAGTGTGCGAGCTCAATATAT
166148646 ATATAGCACTAAGTGTGCG-GACTCAATATAT
1 ATATAGCACTAAGTGTGCGAG-CTCAATATAT
166148677 GCTTTTGCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (31 bp):
ATATAGCACTAAGTGTGCGAGCTCAATATAT
Found at i:166156640 original size:31 final size:31
Alignment explanation
Indices: 166156581--166156642 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
166156571 GAGTTTGATC
*
166156581 ATATAGCACTAAGTGTGCGAGCTGAATATAT
1 ATATAGCACTAAGTGTGCGAGCTCAATATAT
166156612 ATATAGCACTAAGTGTGCG-GACTCAATATAT
1 ATATAGCACTAAGTGTGCGAG-CTCAATATAT
166156643 GCTTTTGCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (31 bp):
ATATAGCACTAAGTGTGCGAGCTCAATATAT
Found at i:166159510 original size:47 final size:46
Alignment explanation
Indices: 166159365--166159630 Score: 177
Period size: 47 Copynumber: 5.7 Consensus size: 46
166159355 TTTTTTGTGT
* * * * *
166159365 GCCAGTGTATGACATGTCTGGAACATGCATCGGCC-ACATTATGGGT-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGA-GAT-GATA
** *
166159411 GCCAGTAAAAGACCATGTCTGGGACATGGCATCGGCAC-AGAGACGAGT-
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTAGAGATGA-TA
* * *
166159459 GCCAGTGTAAGACTTGTTTGGGACATGCATCGGCCTTGACGATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGA-GATGATA
* * * * *
166159506 GCCAGAGTAAGGCGTGTCTGGGACACGCATCGG-CTAAGAGTTG-T-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-AGAGATGATA
** * *
166159550 GTTAGTGTAAGACATGTCTGGGACATGGCATCAGCCTCGATGATGATA
1 GCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTAGA-GATGATA
* *
166159598 GCCAATGTAAGACCATGCCTGGGACATGGCATC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
166159631 TGCAACTTAT
Statistics
Matches: 172, Mismatches: 34, Indels: 25
0.74 0.15 0.11
Matches are distributed among these distances:
44 20 0.12
45 10 0.06
46 30 0.17
47 61 0.35
48 29 0.17
49 22 0.13
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGAGATGATA
Found at i:166162736 original size:40 final size:40
Alignment explanation
Indices: 166162677--166162884 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 40
166162667 CAATTGAATG
* * *
166162677 ATATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
166162717 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
166162757 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
166162797 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
166162837 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
166162877 ATATCCGG
1 ATATCCGG
166162885 TTGTAATCCG
Statistics
Matches: 145, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 145 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:166162815 original size:80 final size:80
Alignment explanation
Indices: 166162679--166162884 Score: 261
Period size: 80 Copynumber: 2.6 Consensus size: 80
166162669 ATTGAATGAT
* * * * * *
166162679 ATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
166162744 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
166162759 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* *
166162824 TGTGCAAGTCGTTAT
66 TGTGCAAGTCGCTAC
* *
166162839 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
166162885 TTGTAATCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
80 108 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:166177207 original size:40 final size:40
Alignment explanation
Indices: 166177162--166177291 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
166177152 CGGAATACAA
166177162 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
166177202 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
166177242 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
166177282 CCGGATATAA
1 CCGGATATAA
166177292 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:166181831 original size:27 final size:28
Alignment explanation
Indices: 166181775--166181844 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
166181765 AAACTTGTAC
166181775 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
166181803 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
166181830 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
166181845 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:166181855 original size:27 final size:27
Alignment explanation
Indices: 166181775--166181856 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
166181765 AAACTTGTAC
* *
166181775 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
166181803 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
166181830 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
166181857 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:166185088 original size:10 final size:11
Alignment explanation
Indices: 166185055--166185100 Score: 74
Period size: 11 Copynumber: 4.2 Consensus size: 11
166185045 TCATTTTAGC
*
166185055 TTAATAAATTT
1 TTAATAACTTT
*
166185066 TTAGTAACTTT
1 TTAATAACTTT
166185077 TTAATAACTTT
1 TTAATAACTTT
166185088 TTAATAACTTT
1 TTAATAACTTT
166185099 TT
1 TT
166185101 GCAAAAGTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 32 1.00
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.57
Consensus pattern (11 bp):
TTAATAACTTT
Found at i:166196097 original size:47 final size:46
Alignment explanation
Indices: 166196039--166196160 Score: 181
Period size: 47 Copynumber: 2.6 Consensus size: 46
166196029 GCTTTGGCAC
*
166196039 TAAGACTAGGATACAATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATAC-ATGTAAGACCATGTTTGGAACATGGCATTTGG
*
166196086 TAAGACAAGGATACCCTGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATA-CATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
166196133 TAGGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATA-CATGTAAGACCATG
166196161 CCAAGGCATG
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
47 67 0.99
48 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.26
Consensus pattern (46 bp):
TAAGACAAGGATACATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:166196214 original size:54 final size:54
Alignment explanation
Indices: 166196134--166196376 Score: 294
Period size: 54 Copynumber: 4.5 Consensus size: 54
166196124 GGCATTTGGT
166196134 AGGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATA
1 AGGA-AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATA
*
166196189 AGGAAAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATA
1 AGGAAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATA
* * * * **
166196243 AGGTAAA-GAAAGCATGTAAGACCATGTCAAGACATGGCATTGATTAGTTACTATA
1 AGG-AAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTT-CTATA
** * ***
166196298 AGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCCTTGGTGAGTTC-ATA
1 AGG-AAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATA
* *
166196351 AGGTAAGGATATCACGTAAGACCATG
1 AGGAAAGGATATCATGTAAGACCATG
166196377 TCTAGACATG
Statistics
Matches: 165, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
52 4 0.02
53 20 0.12
54 90 0.55
55 50 0.30
56 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (54 bp):
AGGAAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATA
Found at i:166196415 original size:108 final size:109
Alignment explanation
Indices: 166196150--166196411 Score: 273
Period size: 108 Copynumber: 2.4 Consensus size: 109
166196140 AGGATATCAT
* * * * * ***
166196150 GTAAGACCATGCCAAGGCATGGCATTGAAAAGTT-CTATAAGG-AAAGGAAATCATGTAAGACCA
1 GTAAGACCATGTCAAGACATGGCAATGATAAGTTACTAAAAGGAAAAGG-TCCCATGTAAGACCA
*
166196213 TGCCAAGGCATGGCATTGAAAAGTTCTATAAGGTAAAGAAAGCAT
65 TGCCAAGGCATGGCATTGAAAAGTTCTATAAGGTAAAGAAAGCAC
* * * *
166196258 GTAAGACCATGTCAAGACATGGCATTGATTAGTTACTATAAGGCAAAGGTCCCATGTAAGACCAT
1 GTAAGACCATGTCAAGACATGGCAATGATAAGTTACTAAAAGGAAAAGGTCCCATGTAAGACCAT
* *** * * *
166196323 GCCAAGGCATGGCCTTGGTGAGTTC-ATAAGGTAAGGATATCAC
66 GCCAAGGCATGGCATTGAAAAGTTCTATAAGGTAAAGAAAGCAC
* *
166196366 GTAAGACCATGTCTAGACATGGCAATGGTAAGTT-C-AAAATGGAAAA
1 GTAAGACCATGTCAAGACATGGCAATGATAAGTTACTAAAA-GGAAAA
166196412 AGGTTCCCGA
Statistics
Matches: 130, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
106 3 0.02
107 6 0.05
108 74 0.57
109 42 0.32
110 5 0.04
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.22
Consensus pattern (109 bp):
GTAAGACCATGTCAAGACATGGCAATGATAAGTTACTAAAAGGAAAAGGTCCCATGTAAGACCAT
GCCAAGGCATGGCATTGAAAAGTTCTATAAGGTAAAGAAAGCAC
Found at i:166202359 original size:47 final size:46
Alignment explanation
Indices: 166202301--166202421 Score: 170
Period size: 47 Copynumber: 2.6 Consensus size: 46
166202291 GCTTTGGCAC
166202301 TAAGACAAGGATACGATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATAC-ATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
166202348 TAAGACAAGGATACCCTATAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATA-CATGTAAGACCATGTTTGGAACATGGCATTTGG
* * *
166202395 TAGGATAAGGATATCATGAAAGACCAT
1 TAAGACAAGGATA-CATGTAAGACCAT
166202422 ACCAAGGCAT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
47 64 0.98
48 1 0.02
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (46 bp):
TAAGACAAGGATACATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:166202481 original size:54 final size:54
Alignment explanation
Indices: 166202401--166202638 Score: 264
Period size: 54 Copynumber: 4.4 Consensus size: 54
166202391 TTGGTAGGAT
* *
166202401 AAGGATATCATGAAAGACCATACCAAGGCATGGCATTGAAAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATAAGGC
* *
166202455 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATAAGGT
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATAAGGC
* * * * * **
166202509 AAAGAAAGCATGTAAGACCATGTCAAGACATGGCATTGATTAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTT-CTATAAGGC
** * * *** *
166202564 AAAGG-TCCCATGTAAGGCCATGCCAAGGCATGGCCTTGGTGAGTTC-ATAAGGT
1 -AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATAAGGC
*
166202617 AAGGATATCACGTAAGACCATG
1 AAGGATATCATGTAAGACCATG
166202639 TCTAGACATG
Statistics
Matches: 155, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
52 4 0.03
53 19 0.12
54 90 0.58
55 39 0.25
56 3 0.02
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATAAGGC
Found at i:166202649 original size:108 final size:108
Alignment explanation
Indices: 166202400--166202651 Score: 301
Period size: 108 Copynumber: 2.3 Consensus size: 108
166202390 TTTGGTAGGA
* ** * *
166202400 TAAGGATATCATGAAAGACCATACCAAGGCATGGCATTGAAAAGTTCTATAAGGCAAGGAAATCA
1 TAAGGATATCATGTAAGACCATGTCAAGACATGGCATTGAAAAGTTCTATAAGGCAAGGAAACCA
166202465 TGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATAAGG
66 TGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATAAGG
* * * ** **
166202508 TAAAGAAAGCATGTAAGACCATGTCAAGACATGGCATTGATTAGTTACTATAAGGCAAAGG-TCC
1 TAAGGATATCATGTAAGACCATGTCAAGACATGGCATTGAAAAGTT-CTATAAGGC-AAGGAAAC
* * ***
166202572 CATGTAAGGCCATGCCAAGGCATGGCCTTGGTGAGTTC-ATAAGG
64 CATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATAAGG
* *
166202616 TAAGGATATCACGTAAGACCATGTCTAGACATGGCA
1 TAAGGATATCATGTAAGACCATGTCAAGACATGGCA
166202652 ATGGTAAGTT
Statistics
Matches: 120, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
108 74 0.62
109 42 0.35
110 4 0.03
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (108 bp):
TAAGGATATCATGTAAGACCATGTCAAGACATGGCATTGAAAAGTTCTATAAGGCAAGGAAACCA
TGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATAAGG
Found at i:166202677 original size:108 final size:109
Alignment explanation
Indices: 166202463--166202673 Score: 257
Period size: 108 Copynumber: 2.0 Consensus size: 109
166202453 GCAAGGAAAT
*
166202463 CATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATAAGGTAAAGAAAGCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATAAGGTAAAGAAAGCACGTAAGACC
* * * *
166202528 ATGTCAAGACATGGCATTGATTAGTTACTATAAGGCAAAGGTCC
66 ATGTCAAGACATGGCAATGATAAGTTACTAAAAGGAAAAGGTCC
* * *** * * *
166202572 CATGTAAGGCCATGCCAAGGCATGGCCTTGGTGAGTTC-ATAAGGTAAGGATATCACGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATAAGGTAAAGAAAGCACGTAAGACC
* *
166202636 ATGTCTAGACATGGCAATGGTAAGTT-C-AAAATGGAAAA
66 ATGTCAAGACATGGCAATGATAAGTTACTAAAA-GGAAAA
166202674 AGGTTCCCGA
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
106 3 0.03
107 6 0.07
108 44 0.51
109 33 0.38
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATAAGGTAAAGAAAGCACGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTACTAAAAGGAAAAGGTCC
Found at i:166205469 original size:29 final size:29
Alignment explanation
Indices: 166205430--166205504 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
166205420 GGTTGAGAGA
* *
166205430 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
166205459 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
166205488 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
166205505 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:166213372 original size:29 final size:29
Alignment explanation
Indices: 166213333--166213407 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
166213323 GGTTGAGAGA
* *
166213333 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
166213362 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
166213391 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
166213408 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:166215879 original size:15 final size:15
Alignment explanation
Indices: 166215852--166215893 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
166215842 CGTAATTATA
166215852 TTTAATATTAAATACC
1 TTTAAT-TTAAATACC
**
166215868 TTTAATTTAAATATT
1 TTTAATTTAAATACC
166215883 TTTAATTTAAA
1 TTTAATTTAAA
166215894 AATAATGGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 18 0.75
16 6 0.25
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (15 bp):
TTTAATTTAAATACC
Found at i:166217451 original size:40 final size:40
Alignment explanation
Indices: 166217407--166217487 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
166217397 CATGCTTGTT
*
166217407 CATGGAAGGAGTTGCTCAAATGGCTTCCAAATCTTATCAA
1 CATGGAAGGAGTTGCTCAAATGGCTTCCAAAGCTTATCAA
*
166217447 CATGGAAGGAGTTGCTCAAATGGCTTCCAAAGCTTTTCAA
1 CATGGAAGGAGTTGCTCAAATGGCTTCCAAAGCTTATCAA
166217487 C
1 C
166217488 TTATATATCT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (40 bp):
CATGGAAGGAGTTGCTCAAATGGCTTCCAAAGCTTATCAA
Found at i:166218890 original size:84 final size:84
Alignment explanation
Indices: 166218727--166218890 Score: 251
Period size: 84 Copynumber: 2.0 Consensus size: 84
166218717 GCGTTTTTAA
* * *
166218727 AAAAACGCTGGTACTCCCCTAAAAATCCAATTAAAACGACTCCGTTTTCGTTAAACTGCTATGTT
1 AAAAACGCCGCTACTCCCCTAAAAATCCAATTAAAACGACGCCGTTTTCGTTAAACTGCTATGTT
* *
166218792 TTTTGCGGCATTTTTTTCG
66 TTTTACGACATTTTTTTCG
* *
166218811 AAAAACGCCGCTACTCTCCTAAATATCCAATTAAAACGACGCCGTTTTCGTT-AACTGCTATGTT
1 AAAAACGCCGCTACTCCCCTAAAAATCCAATTAAAACGACGCCGTTTTCGTTAAACTGCTATGTT
166218875 TTTTACGAC-TTTTTTT
66 TTTTACGACATTTTTTT
166218891 AAATAAACGC
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
82 7 0.10
83 19 0.26
84 47 0.64
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (84 bp):
AAAAACGCCGCTACTCCCCTAAAAATCCAATTAAAACGACGCCGTTTTCGTTAAACTGCTATGTT
TTTTACGACATTTTTTTCG
Found at i:166219272 original size:7 final size:7
Alignment explanation
Indices: 166219262--166219300 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
166219252 CTCTAAATTA
*
166219262 TAAAGCC
1 TAAACCC
166219269 TAAACCC
1 TAAACCC
166219276 TAAACCC
1 TAAACCC
* *
166219283 TAATCTC
1 TAAACCC
166219290 TAAACCC
1 TAAACCC
166219297 TAAA
1 TAAA
166219301 AATTAAATCA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.44, C:0.33, G:0.03, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:166219338 original size:14 final size:14
Alignment explanation
Indices: 166219321--166219352 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
166219311 TAAACCTCAT
166219321 ACCCCAAACCATAA
1 ACCCCAAACCATAA
*
166219335 ACCCCAAATCATAA
1 ACCCCAAACCATAA
166219349 ACCC
1 ACCC
166219353 TAGACCTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.47, C:0.44, G:0.00, T:0.09
Consensus pattern (14 bp):
ACCCCAAACCATAA
Found at i:166219658 original size:14 final size:14
Alignment explanation
Indices: 166219641--166219673 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
166219631 ATAGTTAACT
166219641 CATAAACCTTAAAC
1 CATAAACCTTAAAC
166219655 CATAAACCTTAAAC
1 CATAAACCTTAAAC
*
166219669 TATAA
1 CATAA
166219674 TGATAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (14 bp):
CATAAACCTTAAAC
Found at i:166219894 original size:41 final size:41
Alignment explanation
Indices: 166219832--166219915 Score: 143
Period size: 41 Copynumber: 2.0 Consensus size: 41
166219822 TTATATGACT
*
166219832 TTTAGCGGCGTTTTATCAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTATCAAAAGCGCCGCTAATGCTATGGTC
166219873 TTTAGCGGCGTTTTAAT-AAAAGCGCCGCTAATGCTATGGTC
1 TTTAGCGGCGTTTT-ATCAAAAGCGCCGCTAATGCTATGGTC
166219914 TT
1 TT
166219916 CAGCTCTGGT
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
41 39 0.95
42 2 0.05
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.33
Consensus pattern (41 bp):
TTTAGCGGCGTTTTATCAAAAGCGCCGCTAATGCTATGGTC
Found at i:166220052 original size:41 final size:40
Alignment explanation
Indices: 166219918--166220044 Score: 157
Period size: 41 Copynumber: 3.1 Consensus size: 40
166219908 ATGGTCTTCA
* * *
166219918 GCTCTGGTCTTTAGCGGCGTTTTACCAAAAGCGCCGCTAAT
1 GCTCT-GTTTTTAGCGGCGTTTTACCAAAAACGCCGCTATT
*
166219959 GCTCTGTTTTTAGCGGCGCTTTTTA-CTAAAACGCCGCTATT
1 GCTCTGTTTTTAGCGGCG--TTTTACCAAAAACGCCGCTATT
* * *
166220000 GCTCTGTTTTTAGCGGCGTCTTACCAAAAACACCACTATT
1 GCTCTGTTTTTAGCGGCGTTTTACCAAAAACGCCGCTATT
166220040 GCTCT
1 GCTCT
166220045 TTGTTTTACA
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
39 4 0.05
40 30 0.40
41 36 0.48
42 5 0.07
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.34
Consensus pattern (40 bp):
GCTCTGTTTTTAGCGGCGTTTTACCAAAAACGCCGCTATT
Found at i:166229906 original size:22 final size:21
Alignment explanation
Indices: 166229876--166229941 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
166229866 TACAAATTAA
166229876 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
166229898 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
166229919 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
166229938 ATCT
1 ATCT
166229942 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:166229928 original size:19 final size:19
Alignment explanation
Indices: 166229893--166229990 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
166229883 AGATTACAAG
166229893 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
166229914 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
166229933 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
166229950 ATCATATCTAAGGTTGCAT
1 ATCATATCTAAGATTGCAT
166229969 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
166229988 ATC
1 ATC
166229991 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
20 1 0.01
21 8 0.11
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:166229957 original size:36 final size:37
Alignment explanation
Indices: 166229893--166229990 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
166229883 AGATTACAAG
166229893 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
*
166229933 ATCATATCTAAGATTG-TATCATATCTAAGGTTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
166229969 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
166229991 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:166230596 original size:43 final size:43
Alignment explanation
Indices: 166230548--166230643 Score: 165
Period size: 43 Copynumber: 2.2 Consensus size: 43
166230538 TTATTTGAAA
166230548 AAACGCCGCTAAAGATCAAGACCTTTAGCGGCGCTTTCCCTAC
1 AAACGCCGCTAAAGATCAAGACCTTTAGCGGCGCTTTCCCTAC
* *
166230591 AAACGCCACTAAAGATCAAGACCTTTAGCGGCGCTTTTCCTAC
1 AAACGCCGCTAAAGATCAAGACCTTTAGCGGCGCTTTCCCTAC
*
166230634 AAACTCCGCT
1 AAACGCCGCT
166230644 TAGCAGCGCT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCAAGACCTTTAGCGGCGCTTTCCCTAC
Found at i:166230655 original size:28 final size:28
Alignment explanation
Indices: 166230615--166230671 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
166230605 ATCAAGACCT
* *
166230615 TTAGCGGCGCTTTTCCTACAAACTCCGC
1 TTAGCAGCGCTTTTCCTACAAACGCCGC
*
166230643 TTAGCAGCGCTTTTCCTATAAACGCCGC
1 TTAGCAGCGCTTTTCCTACAAACGCCGC
166230671 T
1 T
166230672 AAAGATCACG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.19, C:0.33, G:0.18, T:0.30
Consensus pattern (28 bp):
TTAGCAGCGCTTTTCCTACAAACGCCGC
Found at i:166230714 original size:71 final size:71
Alignment explanation
Indices: 166230572--166230714 Score: 207
Period size: 71 Copynumber: 2.0 Consensus size: 71
166230562 ATCAAGACCT
* *
166230572 TTAGCGGCGCTTTCCCTACAAACGCCACTAAAGATCAAGACCTTTAGCGGCGCTTTTCCTACAAA
1 TTAGCAGCGCTTTCCCTACAAACGCCACTAAAGATCAAGACCTTTAGCGGCGCTTTTCCTAAAAA
*
166230637 CTCCGC
66 CGCCGC
* * * *
166230643 TTAGCAGCGCTTTTCCTATAAACGCCGCTAAAGATCACGACCTTTAGCGGCGCTTTT-CTCAAAA
1 TTAGCAGCGCTTTCCCTACAAACGCCACTAAAGATCAAGACCTTTAGCGGCGCTTTTCCT-AAAA
166230707 ACGCCGC
65 ACGCCGC
166230714 T
1 T
166230715 AAAAGTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
70 2 0.03
71 62 0.97
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.25
Consensus pattern (71 bp):
TTAGCAGCGCTTTCCCTACAAACGCCACTAAAGATCAAGACCTTTAGCGGCGCTTTTCCTAAAAA
CGCCGC
Found at i:166232483 original size:28 final size:27
Alignment explanation
Indices: 166232428--166232513 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 27
166232418 AGCATGGCTG
* *
166232428 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
166232454 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
* *
166232482 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
166232509 CCAGA
1 CCAGA
166232514 ACGCTTCCTC
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
26 5 0.09
27 31 0.58
28 17 0.32
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:166234238 original size:26 final size:27
Alignment explanation
Indices: 166234130--166234239 Score: 147
Period size: 26 Copynumber: 4.2 Consensus size: 27
166234120 CATGAAATTC
166234130 TTATCA-TGAAACATTTACCTAACCCA
1 TTATCATTGAAACATTTACCTAACCCA
**
166234156 TTAT-AACGAAACATTTACCTAACCCA
1 TTATCATTGAAACATTTACCTAACCCA
* *
166234182 TTATCA-TGGAACATTTACCTAACCTA
1 TTATCATTGAAACATTTACCTAACCCA
*
166234208 TTATCATTG-AACATTTACCTAACCTA
1 TTATCATTGAAACATTTACCTAACCCA
166234234 TTATCA
1 TTATCA
166234240 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 4, Indels: 6
0.89 0.05 0.07
Matches are distributed among these distances:
25 1 0.01
26 73 0.95
27 3 0.04
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (27 bp):
TTATCATTGAAACATTTACCTAACCCA
Found at i:166241741 original size:128 final size:131
Alignment explanation
Indices: 166241489--166241744 Score: 385
Period size: 128 Copynumber: 2.0 Consensus size: 131
166241479 TTTAGAGAGT
* *
166241489 ATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAGCAGGAAATCGCAACCCAGCACGA
1 ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAGAAGGAAATCGCAACCCAGCACGA
* * *
166241554 TAGGGCAAGATTCCCCGAATCACCAAATATCGAGTATTACCTTCGTTTTGAAGAGTTTTTAAAGA
66 TAGAGCAAGATTCCCCGAATCACCAAACATCGAGTATTACCTTCGTTTTGAAGAATTTTTAAAGA
166241619 C
131 C
*
166241620 ATGAGTGAAATTCCAAAGGAATATTCGATTGTTTTGAA-AA-AAGGAAATCGCAACCCAGCACGA
1 ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAGAAGGAAATCGCAACCCAGCACGA
* ** *
166241683 TAGAGCATGATT-CCCGAATTGCCAAACATCGAGTATTGCCTTCGTTTT-AGAGAATTTTTAAA
66 TAGAGCAAGATTCCCCGAATCACCAAACATCGAGTATTACCTTCGTTTTGA-AGAATTTTTAAA
166241745 AGAATAATTA
Statistics
Matches: 114, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
127 1 0.01
128 43 0.38
129 32 0.28
130 2 0.02
131 36 0.32
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (131 bp):
ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAGAAGGAAATCGCAACCCAGCACGA
TAGAGCAAGATTCCCCGAATCACCAAACATCGAGTATTACCTTCGTTTTGAAGAATTTTTAAAGA
C
Found at i:166243759 original size:42 final size:43
Alignment explanation
Indices: 166243662--166243783 Score: 192
Period size: 42 Copynumber: 2.9 Consensus size: 43
166243652 GCTAAAACTT
*
166243662 TAAAGACCAGGACTTATAGCGGCACTTATATAAAAAACGCCGC
1 TAAAGACCAGGACTTATAGCGGCGCTTATATAAAAAACGCCGC
* * *
166243705 TAATGACAAGGACTTATAGCGGCGCTT-TTTAAAAAACGCCGC
1 TAAAGACCAGGACTTATAGCGGCGCTTATATAAAAAACGCCGC
*
166243747 TAAAGACCAGGACTTATAGAGGCGCTTATATAAAAAA
1 TAAAGACCAGGACTTATAGCGGCGCTTATATAAAAAA
166243784 AAGCCGCGAA
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
42 38 0.54
43 32 0.46
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (43 bp):
TAAAGACCAGGACTTATAGCGGCGCTTATATAAAAAACGCCGC
Found at i:166243819 original size:85 final size:86
Alignment explanation
Indices: 166243662--166243961 Score: 225
Period size: 85 Copynumber: 3.5 Consensus size: 86
166243652 GCTAAAACTT
* * * * * ** ** *
166243662 TAAAGACCAGGACTTATAGCGGCACTTATAT-AAAAAACGCCGCTAATGACAAGGACTTATAGCG
1 TAAAGACCAGGACTTATAGAGGCGCTTATATAAAAAAACGCCGCAAAAGTCTTGTTCTT-TAGTG
166243726 GCGCTTTTTAAAAAA-CGCCGC
65 GCGCTTTTTAAAAAAGCGCCGC
*
166243747 TAAAGACCAGGACTTATAGAGGCGCTTATATAAAAAAAAGCCGCGAAAAGTCTTGTTCTTTAGTG
1 TAAAGACCAGGACTTATAGAGGCGCTTATATAAAAAAACGCCGC-AAAAGTCTTGTTCTTTAGTG
*
166243812 GCGTTTTTTAAAAAAGCGCCGC
65 GCGCTTTTTAAAAAAGCGCCGC
* ** ** * * * * * *
166243834 T-AAGTCTTGTTCTT-TAGTGGCGTTTTTTTAAAAAAGCGCCACTAAAAGTCTTGTTCTTTAGTG
1 TAAAGACCAGGACTTATAGAGGCGCTTATATAAAAAAACGCCGC-AAAAGTCTTGTTCTTTAGTG
* * * *
166243897 GCGTTTTTTTAAAAAGTGCCAC
65 GCGCTTTTTAAAAAAGCGCCGC
* * * * * *
166243919 TAAAAGTCCTGGTCTT-TAGCGGCGCTT-TTTTAAAAAACGCCGC
1 T-AAAGACCAGGACTTATAGAGGCGCTTATATAAAAAAACGCCGC
166243962 TAATTTGCCC
Statistics
Matches: 175, Mismatches: 35, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
85 90 0.51
86 50 0.29
87 35 0.20
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (86 bp):
TAAAGACCAGGACTTATAGAGGCGCTTATATAAAAAAACGCCGCAAAAGTCTTGTTCTTTAGTGG
CGCTTTTTAAAAAAGCGCCGC
Found at i:166243826 original size:44 final size:43
Alignment explanation
Indices: 166243792--166243964 Score: 244
Period size: 43 Copynumber: 4.0 Consensus size: 43
166243782 AAAAGCCGCG
*
166243792 AAAAGTCTTGTTCTTTAGTGGCGTTTTTTAAAAAAGCGCCGCT
1 AAAAGTCTTGTTCTTTAGTGGCGTTTTTTAAAAAAGCGCCACT
166243835 --AAGTCTTGTTCTTTAGTGGCGTTTTTTTAAAAAAGCGCCACT
1 AAAAGTCTTGTTCTTTAGTGGCG-TTTTTTAAAAAAGCGCCACT
* *
166243877 AAAAGTCTTGTTCTTTAGTGGCGTTTTTTTAAAAAGTGCCACT
1 AAAAGTCTTGTTCTTTAGTGGCGTTTTTTAAAAAAGCGCCACT
* * * *
166243920 AAAAGTCCTGGTCTTTAGCGGCGCTTTTTTAAAAAA-CGCCGCT
1 AAAAGTCTTGTTCTTTAGTGGCG-TTTTTTAAAAAAGCGCCACT
166243963 AA
1 AA
166243965 TTTGCCCAGT
Statistics
Matches: 117, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
41 21 0.18
42 19 0.16
43 45 0.38
44 32 0.27
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (43 bp):
AAAAGTCTTGTTCTTTAGTGGCGTTTTTTAAAAAAGCGCCACT
Found at i:166249868 original size:18 final size:18
Alignment explanation
Indices: 166249845--166249881 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
166249835 TATGTAAGTT
**
166249845 GTTATGTACGTTATGTGA
1 GTTATGTAAATTATGTGA
166249863 GTTATGTAAATTATGTGA
1 GTTATGTAAATTATGTGA
166249881 G
1 G
166249882 AGAAGGTTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.03, G:0.27, T:0.43
Consensus pattern (18 bp):
GTTATGTAAATTATGTGA
Found at i:166250598 original size:183 final size:183
Alignment explanation
Indices: 166250290--166250621 Score: 637
Period size: 183 Copynumber: 1.8 Consensus size: 183
166250280 CCTAGAACAG
*
166250290 ATGTAAGATTATAAGAGTAGCATCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
*
166250355 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTTAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
166250420 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
166250473 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
166250538 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
*
166250603 AGTAGGAAGCAGTAACTGA
131 AGCAGGAAGCAGTAACTGA
166250622 TGCTGAATCT
Statistics
Matches: 146, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 146 1.00
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.28
Consensus pattern (183 bp):
ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
Found at i:166250757 original size:15 final size:16
Alignment explanation
Indices: 166250717--166250758 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
166250707 CGTAATTATA
166250717 TTTAATATTAAATACCT
1 TTTAAT-TTAAATACCT
*
166250734 TTTAA-TTAAATA-TT
1 TTTAATTTAAATACCT
166250748 TTTAATTTAAA
1 TTTAATTTAAA
166250759 AATAATGGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 6 0.26
15 12 0.52
17 5 0.22
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (16 bp):
TTTAATTTAAATACCT
Found at i:166252319 original size:39 final size:40
Alignment explanation
Indices: 166252276--166252355 Score: 153
Period size: 39 Copynumber: 2.0 Consensus size: 40
166252266 CATGCTTGTT
166252276 CATGGAAGGAGTTGCTCAAATGGCTTCCAAAGC-TTTCAA
1 CATGGAAGGAGTTGCTCAAATGGCTTCCAAAGCTTTTCAA
166252315 CATGGAAGGAGTTGCTCAAATGGCTTCCAAAGCTTTTCAA
1 CATGGAAGGAGTTGCTCAAATGGCTTCCAAAGCTTTTCAA
166252355 C
1 C
166252356 TTATATATCT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
39 33 0.82
40 7 0.17
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (40 bp):
CATGGAAGGAGTTGCTCAAATGGCTTCCAAAGCTTTTCAA
Found at i:166253695 original size:80 final size:80
Alignment explanation
Indices: 166253594--166253753 Score: 232
Period size: 80 Copynumber: 2.0 Consensus size: 80
166253584 GCGTTTTTAA
* *
166253594 AAAAACGCTGGTACTCCCCTAAAAATCCAATTAAAACGA-CGTTTTCGTTAAACTGCTATGTTTT
1 AAAAACGCCGCTACTCCCCTAAAAATCCAATTAAAACGACCGTTTTCGTT-AACTGCTATGTTTT
*
166253658 TTGCGGCATTTTTTCG
65 TTACGGCATTTTTTCG
* *
166253674 AAAAACGCCGCTACTCTCCTAAATATCCAATTAAAACGACGCCGTTTTCGTTAACTGCTATGTTT
1 AAAAACGCCGCTACTCCCCTAAAAATCCAATTAAAACGA--CCGTTTTCGTTAACTGCTATGTTT
*
166253739 TTTACGGCTTTTTTT
64 TTTACGGCATTTTTT
166253754 AAATAAACGC
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
80 35 0.49
82 26 0.37
83 10 0.14
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.36
Consensus pattern (80 bp):
AAAAACGCCGCTACTCCCCTAAAAATCCAATTAAAACGACCGTTTTCGTTAACTGCTATGTTTTT
TACGGCATTTTTTCG
Found at i:166254135 original size:7 final size:7
Alignment explanation
Indices: 166254125--166254163 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
166254115 CTCTAAATTA
*
166254125 TAAAGCC
1 TAAACCC
166254132 TAAACCC
1 TAAACCC
166254139 TAAACCC
1 TAAACCC
* *
166254146 TAATCTC
1 TAAACCC
166254153 TAAACCC
1 TAAACCC
166254160 TAAA
1 TAAA
166254164 AATTAAATCA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.44, C:0.33, G:0.03, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:166254201 original size:14 final size:14
Alignment explanation
Indices: 166254184--166254215 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
166254174 TAAACCTCAT
166254184 ACCCCAAACCATAA
1 ACCCCAAACCATAA
*
166254198 ACCCCAAATCATAA
1 ACCCCAAACCATAA
166254212 ACCC
1 ACCC
166254216 TAGACCTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.47, C:0.44, G:0.00, T:0.09
Consensus pattern (14 bp):
ACCCCAAACCATAA
Done.