Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 536 of 770
Found at i:166635283 original size:40 final size:39
Alignment explanation
Indices: 166635145--166635331 Score: 173
Period size: 40 Copynumber: 4.7 Consensus size: 39
166635135 GCTACTCGTT
* * * *
166635145 CAAATGCCTTCAGGACATAGCCCGGTTATAGCAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
* *
166635185 CAAATGCCTTCGGGACCTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
** *
166635225 CCCATGCCTTTGGG-CTTAGCCCGGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGATTAGTAACTCGCA
* * * *
166635264 CAAAGGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
166635305 CAAAAT-CCTTCGGGACTTAGCCCGGAT
1 C-AAATGCCTTCGGGACTTAGCCCGGAT
166635332 ATCATTCGAA
Statistics
Matches: 120, Mismatches: 19, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 60 0.50
41 22 0.18
42 6 0.05
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:166641622 original size:32 final size:33
Alignment explanation
Indices: 166641585--166641663 Score: 99
Period size: 32 Copynumber: 2.4 Consensus size: 33
166641575 AGTGAACAAC
* *
166641585 ACAGTATCAGTACAATTTGGGCCATGCCC-TAT
1 ACAGTATCAGTACAATCTGGGCCAAGCCCTTAT
*
166641617 TCAGTATCCA-TACAATCTGGGCCAAGCCCTTAT
1 ACAGTAT-CAGTACAATCTGGGCCAAGCCCTTAT
*
166641650 ACAGTAGCAGTACA
1 ACAGTATCAGTACA
166641664 GTGTAAGATG
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
32 25 0.64
33 14 0.36
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (33 bp):
ACAGTATCAGTACAATCTGGGCCAAGCCCTTAT
Found at i:166644084 original size:39 final size:40
Alignment explanation
Indices: 166644023--166644275 Score: 306
Period size: 39 Copynumber: 6.5 Consensus size: 40
166644013 AAGCCAAGTA
* * *
166644023 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
166644061 CCTTCGGGACATAGCCCGGATATAGTAACTCG-ACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
166644100 CCTTCGGGACTTAG-CCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
166644139 CTTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
166644179 CCTTC-GGACTTAGCCCGGATATAGTAGCTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
166644218 CCTTCGGGACTTAG-CCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
166644257 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
166644276 TTATCATCCG
Statistics
Matches: 186, Mismatches: 21, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
38 30 0.16
39 118 0.63
40 38 0.20
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:166644255 original size:118 final size:117
Alignment explanation
Indices: 166644049--166644275 Score: 327
Period size: 118 Copynumber: 1.9 Consensus size: 117
166644039 GGATATAGCT
*
166644049 ACTCGCTCAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGACCAATGCCTTCGGGACTTAG
1 ACTCGCACAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGACCAATGCCTTCGGGACTTAG
* *
166644114 CCGGATATAGTAGCTCGCACAAATGCTTTCGGGACTTAGCCCGGATGTAATA
66 CCGGATATAGTAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
* *
166644166 ACTCGCACAAATGCCTTC-GGACTTAGCCCGGATATAGTAGCTC-ACACAAATGCCTTCGGGACT
1 ACTCGCAC-AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGAC-C-AATGCCTTCGGGACT
*
166644229 TAGCCGGA-ACTAGTCA-CTAGCGCAAATGCCTTCGGGACTTAGCCCGG
63 TAGCCGGATA-TAGT-AGCTAGCACAAATGCCTTCGGGACTTAGCCCGG
166644276 TTATCATCCG
Statistics
Matches: 99, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
116 2 0.02
117 32 0.32
118 64 0.65
119 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (117 bp):
ACTCGCACAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGACCAATGCCTTCGGGACTTAG
CCGGATATAGTAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
Found at i:166652270 original size:40 final size:40
Alignment explanation
Indices: 166652177--166652432 Score: 360
Period size: 40 Copynumber: 6.5 Consensus size: 40
166652167 AAGCCAAGTA
* * *
166652177 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
166652215 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
166652255 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
166652295 CCTTCGGGACTTAGCCCGGATGTA-TAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
166652334 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
166652374 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
166652414 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
166652433 TTATCATCCG
Statistics
Matches: 198, Mismatches: 15, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
38 12 0.06
39 55 0.28
40 131 0.66
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:166652327 original size:79 final size:80
Alignment explanation
Indices: 166652177--166652432 Score: 378
Period size: 79 Copynumber: 3.2 Consensus size: 80
166652167 AAGCCAAGTA
* * * *
166652177 CCTTCGGGATTTA-ACCGGATATAGCTA-CTCGCTC-AATGCCTTCGGGACATAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAGCTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
166652239 GTAACTCGCACCAATG
65 GTAACTCGCACAAATG
*
166652255 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTA-
1 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
166652319 TAACTCGCACAAATG
66 TAACTCGCACAAATG
166652334 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTA
1 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TA
* * *
166652398 GTCACTAGCGCAAATG
65 GTAACTCGCACAAATG
166652414 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
166652433 TTATCATCCG
Statistics
Matches: 163, Mismatches: 10, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
78 14 0.09
79 92 0.56
80 57 0.35
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCGCACAAATG
Found at i:166652412 original size:119 final size:118
Alignment explanation
Indices: 166652203--166652432 Score: 365
Period size: 119 Copynumber: 1.9 Consensus size: 118
166652193 GGATATAGCT
* *
166652203 ACTCGCTCAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTA
1 ACTCGCACAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA
*
166652268 GCCCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTATA
66 GCCCGGATATAGTAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATGTATA
* *
166652321 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTT
1 ACTCGCAC-AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
*
166652386 AGCCCGGA-ACTAGTCA-CTAGCGCAAATGCCTTCGGGACTTAGCCCGG
65 AGCCCGGATA-TAGT-AGCTAGCACAAATGCCTTCGGGACTTAGCCCGG
166652433 TTATCATCCG
Statistics
Matches: 103, Mismatches: 6, Indels: 5
0.90 0.05 0.04
Matches are distributed among these distances:
118 8 0.08
119 94 0.91
120 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (118 bp):
ACTCGCACAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA
GCCCGGATATAGTAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATGTATA
Found at i:166662218 original size:40 final size:41
Alignment explanation
Indices: 166662173--166662301 Score: 151
Period size: 40 Copynumber: 3.3 Consensus size: 41
166662163 CGGAATATAA
166662173 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACGTAGCACAAATGCCTTCGGGTCTTAGC
* * *
166662213 CCGGATAGAAT---GTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACGTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
166662251 CCGGATGTAGCCAC-TAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACGTAGCACAAATGCCTTCGGGTCTTAGC
166662291 CCGGATATAAT
1 CCGGATATAAT
166662302 TTCCAGCATA
Statistics
Matches: 72, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
37 2 0.03
38 30 0.42
40 40 0.56
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (41 bp):
CCGGATATAATCACGTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:166662315 original size:40 final size:40
Alignment explanation
Indices: 166662173--166662337 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
166662163 CGGAATATAA
* ** *
166662173 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
* *
166662213 CCGGATAGAATGT-C-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCTCCAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * * *
166662251 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
* * * *
166662291 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-ATTAGC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
166662330 CCGGATAT
1 CCGGATAT
166662338 CATTCAATTT
Statistics
Matches: 99, Mismatches: 22, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
38 28 0.28
39 16 0.16
40 55 0.56
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:166670197 original size:40 final size:40
Alignment explanation
Indices: 166670152--166670319 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
166670142 CGGAATATAA
166670152 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
166670192 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
166670232 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
166670272 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
166670312 CCGGATAT
1 CCGGATAT
166670320 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:166670302 original size:80 final size:80
Alignment explanation
Indices: 166670168--166670317 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
166670158 ATAATCACGT
*
166670168 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
166670232 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
166670248 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
166670311 CCCGGAT
64 CCCGGAT
166670318 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:166672137 original size:24 final size:24
Alignment explanation
Indices: 166672105--166672167 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
166672095 AATCTCAAAT
166672105 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
166672129 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
166672153 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
166672168 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:166672866 original size:13 final size:13
Alignment explanation
Indices: 166672844--166672876 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
166672834 AAGGGTTTGT
166672844 TTAT-TAAACTAA
1 TTATCTAAACTAA
166672856 TTATCTAAACTAA
1 TTATCTAAACTAA
*
166672869 TTAACTAA
1 TTATCTAA
166672877 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:166675795 original size:7 final size:6
Alignment explanation
Indices: 166675775--166675852 Score: 75
Period size: 6 Copynumber: 12.3 Consensus size: 6
166675765 AAGAAAATTG
* * * * *
166675775 AAATGA AAATAA AAATCA AAAGAA AAATAA GAATAA AATAAATA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AA-ATA-A AAATAA
166675825 AAATAAA TAAATAA AAATAA AAATAA AA
1 AAAT-AA -AAATAA AAATAA AAATAA AA
166675853 TAAGATGATT
Statistics
Matches: 59, Mismatches: 9, Indels: 8
0.78 0.12 0.11
Matches are distributed among these distances:
6 44 0.75
7 8 0.14
8 7 0.12
ACGTcount: A:0.78, C:0.01, G:0.04, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:166675819 original size:15 final size:15
Alignment explanation
Indices: 166675799--166675855 Score: 73
Period size: 15 Copynumber: 3.7 Consensus size: 15
166675789 ATCAAAAGAA
166675799 AAATAAGAAT-AAAAT
1 AAATAA-AATAAAAAT
166675814 AAATAAAATAAAAAT
1 AAATAAAATAAAAAT
166675829 AAAT-AAATAAAAAT
1 AAATAAAATAAAAAT
166675843 AAAAATAAAATAA
1 --AAATAAAATAA
166675856 GATGATTCAA
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
14 13 0.34
15 15 0.39
16 4 0.11
17 6 0.16
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (15 bp):
AAATAAAATAAAAAT
Found at i:166675823 original size:20 final size:21
Alignment explanation
Indices: 166675797--166675855 Score: 95
Period size: 20 Copynumber: 2.9 Consensus size: 21
166675787 AAATCAAAAG
*
166675797 AAAAATAAGAATAAAATAAAT
1 AAAAATAAAAATAAAATAAAT
166675818 -AAAATAAAAAT-AAATAAAT
1 AAAAATAAAAATAAAATAAAT
166675837 AAAAATAAAAATAAAATAA
1 AAAAATAAAAATAAAATAA
166675856 GATGATTCAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
19 8 0.23
20 21 0.60
21 6 0.17
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.19
Consensus pattern (21 bp):
AAAAATAAAAATAAAATAAAT
Found at i:166675850 original size:40 final size:39
Alignment explanation
Indices: 166675775--166675860 Score: 111
Period size: 40 Copynumber: 2.2 Consensus size: 39
166675765 AAGAAAATTG
* *
166675775 AAATGAAAATAAAAATCAAAAGAAAAATAAGAATAAAAT
1 AAATGAAAATAAAAATAAAAAGAAAAATAAAAATAAAAT
*
166675814 AAAT-AAAATAAAAATAAATAAATAAAAATAAAAATAAAAT
1 AAATGAAAATAAAAAT-AA-AAAGAAAAATAAAAATAAAAT
166675854 AAGATGA
1 AA-ATGA
166675861 TTCAATGAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
38 11 0.28
39 5 0.12
40 21 0.52
41 2 0.05
42 1 0.03
ACGTcount: A:0.76, C:0.01, G:0.06, T:0.17
Consensus pattern (39 bp):
AAATGAAAATAAAAATAAAAAGAAAAATAAAAATAAAAT
Found at i:166680006 original size:18 final size:17
Alignment explanation
Indices: 166679965--166680006 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
166679955 AATTATGATT
166679965 CAAAAATCAGCTAAATA
1 CAAAAATCAGCTAAATA
166679982 CATAAAAT-ATGCTGAAATA
1 CA-AAAATCA-GCT-AAATA
166680001 CAAAAA
1 CAAAAA
166680007 CATAATAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 3 0.14
18 12 0.55
19 7 0.32
ACGTcount: A:0.60, C:0.14, G:0.07, T:0.19
Consensus pattern (17 bp):
CAAAAATCAGCTAAATA
Found at i:166683794 original size:13 final size:13
Alignment explanation
Indices: 166683772--166683804 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
166683762 AAGGGTTTGT
166683772 TTAT-TAAACTAA
1 TTATCTAAACTAA
166683784 TTATCTAAACTAA
1 TTATCTAAACTAA
*
166683797 TTAACTAA
1 TTATCTAA
166683805 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:166686244 original size:30 final size:30
Alignment explanation
Indices: 166686210--166686268 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
166686200 TCCCAAGCCT
166686210 AGGGGCAAAAGTGTAAATATGAAAAAGTTC
1 AGGGGCAAAAGTGTAAATATGAAAAAGTTC
* * * *
166686240 AGGGGCAAAATTTTAATTTTGAAAAAGTT
1 AGGGGCAAAAGTGTAAATATGAAAAAGTT
166686269 TGAGTTAAGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.44, C:0.05, G:0.24, T:0.27
Consensus pattern (30 bp):
AGGGGCAAAAGTGTAAATATGAAAAAGTTC
Found at i:166688505 original size:27 final size:29
Alignment explanation
Indices: 166688475--166688550 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
166688465 ATACCCTCCG
*
166688475 AGCTCGCACAC-CAGTGCCGTAT-TTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
166688502 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
166688531 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
166688551 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
27 10 0.24
28 9 0.22
29 22 0.54
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.26
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:166688532 original size:29 final size:28
Alignment explanation
Indices: 166688421--166688549 Score: 91
Period size: 29 Copynumber: 4.5 Consensus size: 28
166688411 TACTCGATTT
* * *
166688421 CGCACACTTAGTGCCACGTAATTT-AAGCC
1 CGCACACTTAGTGCCA--TATTTTCCAGCA
** *** *
166688450 CGCACACACAGTGCCATACCCTCCGAGCT
1 CGCACACTTAGTGCCATATTTTCC-AGCA
* * *
166688479 CGCACAC-CAGTGCCGTATTTTCCAGCT
1 CGCACACTTAGTGCCATATTTTCCAGCA
*
166688506 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATAT-TTTCCAGCA
166688535 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
166688550 GATCTCGTCA
Statistics
Matches: 80, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
27 13 0.16
28 21 0.26
29 46 0.57
ACGTcount: A:0.24, C:0.36, G:0.17, T:0.23
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATTTTCCAGCA
Found at i:166696370 original size:31 final size:30
Alignment explanation
Indices: 166696324--166696383 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
166696314 CTCGCACACC
* **
166696324 AGTGCCGTATTTTCCAGCTTGCACACTTAT
1 AGTGCCATATTTTCCAGCACGCACACTTAT
166696354 AGTGCCATATATTTCCAGCACGCACACTTA
1 AGTGCCATAT-TTTCCAGCACGCACACTTA
166696384 GTGCCGATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 9 0.35
31 17 0.65
ACGTcount: A:0.25, C:0.28, G:0.15, T:0.32
Consensus pattern (30 bp):
AGTGCCATATTTTCCAGCACGCACACTTAT
Found at i:166704339 original size:39 final size:40
Alignment explanation
Indices: 166704281--166704365 Score: 127
Period size: 39 Copynumber: 2.1 Consensus size: 40
166704271 CGGAATACAA
*
166704281 CCGGATATAACCACATGCACGAATGCCCTC-GGTCTTAGC
1 CCGGATAGAACCACATGCACGAATGCCCTCGGGTCTTAGC
* * *
166704320 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACCACATGCACGAATGCCCTCGGGTCTTAGC
166704360 CCGGAT
1 CCGGAT
166704366 GTAGTCACTA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 26 0.63
40 15 0.37
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.21
Consensus pattern (40 bp):
CCGGATAGAACCACATGCACGAATGCCCTCGGGTCTTAGC
Found at i:166704430 original size:40 final size:40
Alignment explanation
Indices: 166704281--166704447 Score: 142
Period size: 40 Copynumber: 4.2 Consensus size: 40
166704271 CGGAATACAA
* * *
166704281 CCGGATATAACCA-CATGCACGAATGCCCTC-GGTCTTAGC
1 CCGGATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGC
* ** *
166704320 CCGGATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
166704360 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
** * * *
166704400 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
166704440 CCGGATAT
1 CCGGATAT
166704448 CATTCAATTG
Statistics
Matches: 103, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
38 1 0.01
39 23 0.22
40 78 0.76
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
Found at i:166705724 original size:20 final size:17
Alignment explanation
Indices: 166705688--166705724 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
166705678 TTTCTTCCTT
166705688 TCTTTTTTTTTTTTCTC
1 TCTTTTTTTTTTTTCTC
*
166705705 TCTTTGTTTTTGTTTCTC
1 TCTTT-TTTTTTTTTCTC
166705723 TC
1 TC
166705725 ATGTACGGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.00, C:0.19, G:0.05, T:0.76
Consensus pattern (17 bp):
TCTTTTTTTTTTTTCTC
Found at i:166707724 original size:28 final size:28
Alignment explanation
Indices: 166707663--166707760 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
166707653 TCACAAATTG
** * *
166707663 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
166707692 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
166707720 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
166707748 GCACTAAGTGTGC
1 GCACTAAGTGTGC
166707761 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:166711085 original size:29 final size:29
Alignment explanation
Indices: 166711024--166711113 Score: 128
Period size: 29 Copynumber: 3.1 Consensus size: 29
166711014 CACATACCTG
*
166711024 TATATGGCCCACTAGGCCC-AATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
166711052 TATATGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* * * *
166711081 TATATTGCCCATCAGACCCAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
166711110 TATA
1 TATA
166711114 GTCATGCTCA
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
28 18 0.32
29 38 0.68
ACGTcount: A:0.31, C:0.29, G:0.11, T:0.29
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:166714249 original size:41 final size:40
Alignment explanation
Indices: 166714179--166714338 Score: 146
Period size: 41 Copynumber: 3.9 Consensus size: 40
166714169 GGGTTTAAAT
* *
166714179 CCGAGCTTGGTTTCGAAGGGCCTTTGAGCCAGTGCTAATAA
1 CCGAACTTAGTTTCGAAGGG-CTTTGAGCCAGTGCTAATAA
* *
166714220 CCGAACTTTGTTTCGAAGGGCTTTAGAGCCAGTG-TCATAA
1 CCGAACTTAGTTTCGAAGGGCTTT-GAGCCAGTGCTAATAA
* * * *
166714260 CTGGACTTAGTTCCGAAGGGCCTTCGAGCCAGTGGTCTAAT--
1 CCGAACTTAGTTTCGAAGGG-CTTTGAGCCAGT-G-CTAATAA
* * *
166714301 CTGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
1 CCGAACTTAGTTTCGAAGGGC-TTTGAGCCAGTGCTAA
166714339 GAATCGGGCT
Statistics
Matches: 99, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
39 4 0.04
40 35 0.35
41 57 0.58
43 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAACTTAGTTTCGAAGGGCTTTGAGCCAGTGCTAATAA
Found at i:166714359 original size:41 final size:42
Alignment explanation
Indices: 166714176--166714360 Score: 129
Period size: 41 Copynumber: 4.5 Consensus size: 42
166714166 TCGGGGTTTA
* * *
166714176 AATCCGAGCTTGGTTTCGAAGGGCCTTTGAGCCAGTGCTAAT
1 AATCTGAGCTTGATTCCGAAGGGCCTTTGAGCCAGTGCTAAT
* * * *
166714218 AA-CCGAACTTTG-TTTCGAAGGG-CTTTAGAGCCAGTG-TCAT
1 AATCTGAGC-TTGATTCCGAAGGGCCTTT-GAGCCAGTGCTAAT
* * *
166714258 AA-CTG-GACTT-AGTTCCGAAGGGCCTTCGAGCCAGTGGT-CT
1 AATCTGAG-CTTGA-TTCCGAAGGGCCTTTGAGCCAGTGCTAAT
* * *
166714298 AATCTGAGCTT-AGTCTCGAAGGGCTTTTGAGCCAGTGCTAAG
1 AATCTGAGCTTGATTC-CGAAGGGCCTTTGAGCCAGTGCTAAT
*
166714340 AATC-GGGCTTGATTCCGAAGG
1 AATCTGAGCTTGATTCCGAAGG
166714361 ATGTTTGTGC
Statistics
Matches: 116, Mismatches: 15, Indels: 25
0.74 0.10 0.16
Matches are distributed among these distances:
39 2 0.02
40 35 0.30
41 66 0.57
42 13 0.11
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (42 bp):
AATCTGAGCTTGATTCCGAAGGGCCTTTGAGCCAGTGCTAAT
Found at i:166718215 original size:20 final size:20
Alignment explanation
Indices: 166718190--166718261 Score: 144
Period size: 20 Copynumber: 3.6 Consensus size: 20
166718180 GAGACATTGC
166718190 ACACGCCCGTGTGCTTTGGG
1 ACACGCCCGTGTGCTTTGGG
166718210 ACACGCCCGTGTGCTTTGGG
1 ACACGCCCGTGTGCTTTGGG
166718230 ACACGCCCGTGTGCTTTGGG
1 ACACGCCCGTGTGCTTTGGG
166718250 ACACGCCCGTGT
1 ACACGCCCGTGT
166718262 CCCCTGACCG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.11, C:0.32, G:0.33, T:0.24
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTTGGG
Found at i:166724518 original size:47 final size:47
Alignment explanation
Indices: 166724465--166724650 Score: 255
Period size: 47 Copynumber: 4.0 Consensus size: 47
166724455 TTAGGATTCT
* * **
166724465 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCCGAATGGAAA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
166724512 ATGTGATAAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
166724559 ATGTGATGAATATGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
166724606 ATGTGGTGAATATGAAAATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGC
166724651 TAGTGTGAAA
Statistics
Matches: 125, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 125 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:166724614 original size:25 final size:25
Alignment explanation
Indices: 166724539--166724614 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
166724529 ATGCATATAT
166724539 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* *
166724564 ATGAATATGAG-C--AT-G-CATATGT-
1 GTG-ATAAG-GCCGAATGGCCA-ATGTG
166724586 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
166724611 GTGA
1 GTGA
166724615 ATATGAAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 18
0.63 0.07 0.30
Matches are distributed among these distances:
20 1 0.03
21 5 0.13
22 4 0.11
23 7 0.18
24 7 0.18
25 8 0.21
26 5 0.13
27 1 0.03
ACGTcount: A:0.30, C:0.13, G:0.33, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:166724896 original size:37 final size:37
Alignment explanation
Indices: 166724820--166724962 Score: 243
Period size: 37 Copynumber: 3.9 Consensus size: 37
166724810 TATTCCGGTG
166724820 AGACCCGATGACTACGTGTGGAGATT-TGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
166724856 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
*
166724893 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
* * *
166724930 AGACCCGATAACTTCGTGTGGAGATTACGTCCG
1 AGACCCGATGACTACGTGTGGAGATTATGTCCG
166724963 AGCTAAAGGT
Statistics
Matches: 101, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
36 26 0.26
37 75 0.74
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.25
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
Found at i:166726287 original size:40 final size:40
Alignment explanation
Indices: 166726243--166726528 Score: 341
Period size: 40 Copynumber: 7.2 Consensus size: 40
166726233 GGCTAAATCT
* *
166726243 CGAAGAGCATTCGTGCTAGTGATGTATCCCGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTTC
* * *
166726283 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTTC
*
166726323 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTTC
** * *
166726363 CGAAGAGCATTCGTGCTAGTGATATATTTGGGCTAA-ATC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTTC
*
166726402 CTGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 C-GAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTTC
**
166726443 CGAAGAGCATTCGTGCTAGTGATATAT-CGTG-CTAA-ACC
1 CGAAGAGCATTCGTGCTAGTGATATATCCG-GACTAAGTTC
* * * * *
166726481 CAAAGAGCATTCGTGCT-GCTGTTATAT-CGGGCTAGGTCC
1 CGAAGAGCATTCGTGCTAG-TGATATATCCGGACTAAGTTC
166726520 CGAAGAGCA
1 CGAAGAGCA
166726529 ATCATGCTGG
Statistics
Matches: 213, Mismatches: 27, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
37 2 0.01
38 29 0.14
39 19 0.09
40 160 0.75
41 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
CGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTTC
Found at i:166726357 original size:80 final size:80
Alignment explanation
Indices: 166726220--166726497 Score: 461
Period size: 80 Copynumber: 3.5 Consensus size: 80
166726210 GAGAATTGAG
* * * *
166726220 AGTGAAATGTCCGGGCTAAATCTCGAAGAGCATTCGTGCTAGTGATGTATCCCGACTAAGTTCCG
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
166726285 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
166726300 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
166726365 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
** *
166726380 AGTGATATATTTGGGCTAAATCCTGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
166726445 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* *
166726460 AGTGATATAT-CGTGCTAAA-CCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
166726498 GCTGTTATAT
Statistics
Matches: 187, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
78 17 0.09
79 7 0.04
80 163 0.87
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (80 bp):
AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
AAGAGCATTCGTGCT
Found at i:166730602 original size:25 final size:25
Alignment explanation
Indices: 166730568--166730647 Score: 71
Period size: 25 Copynumber: 3.3 Consensus size: 25
166730558 TTTAGGATTC
166730568 TATGTGATGAATGTGAACATGCATA
1 TATGTGATGAATGTGAACATGCATA
* *
166730593 TATGTGATG-AGGCTG-A-ATGGC-CA
1 TATGTGATGAATG-TGAACAT-GCATA
* *
166730616 -ATGTGATAAATGTGAGCATGCATA
1 TATGTGATGAATGTGAACATGCATA
166730640 TATGTGAT
1 TATGTGAT
166730648 AAGGCCGAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
22 9 0.21
23 7 0.17
24 8 0.19
25 18 0.43
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.31
Consensus pattern (25 bp):
TATGTGATGAATGTGAACATGCATA
Found at i:166730622 original size:47 final size:47
Alignment explanation
Indices: 166730569--166730795 Score: 304
Period size: 47 Copynumber: 5.0 Consensus size: 47
166730559 TTAGGATTCT
* * *
166730569 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCTGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
166730616 ATGTGATAAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
166730663 ATGTGATAAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCC-
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
166730709 A----A-GAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* * ** * *
166730751 ATGTGGTGAATATGAAAATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGC
166730796 TAGTGTGAAA
Statistics
Matches: 161, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
41 37 0.23
42 2 0.01
46 1 0.01
47 121 0.75
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:166730648 original size:25 final size:25
Alignment explanation
Indices: 166730616--166730696 Score: 82
Period size: 25 Copynumber: 3.4 Consensus size: 25
166730606 TGAATGGCCA
166730616 ATGTGATAAATGTGAGCATGCATAT
1 ATGTGATAAATGTGAGCATGCATAT
* * *
166730641 ATGTGAT-AA-G-GCCGAATGGC-CA-
1 ATGTGATAAATGTG-AGCAT-GCATAT
166730663 ATGTGATAAATGTGAGCATGCATAT
1 ATGTGATAAATGTGAGCATGCATAT
166730688 ATGTGATAA
1 ATGTGATAA
166730697 GGCCGAATGG
Statistics
Matches: 43, Mismatches: 6, Indels: 14
0.68 0.10 0.22
Matches are distributed among these distances:
22 8 0.19
23 9 0.21
24 9 0.21
25 17 0.40
ACGTcount: A:0.36, C:0.10, G:0.26, T:0.28
Consensus pattern (25 bp):
ATGTGATAAATGTGAGCATGCATAT
Found at i:166730728 original size:41 final size:41
Alignment explanation
Indices: 166730671--166730751 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
166730661 CAATGTGATA
166730671 AATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAAG
1 AATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAAG
*
166730712 AATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAA
1 AATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAA
166730752 TGTGGTGAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.22
Consensus pattern (41 bp):
AATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAAG
Found at i:166730752 original size:88 final size:88
Alignment explanation
Indices: 166730569--166730795 Score: 274
Period size: 88 Copynumber: 2.5 Consensus size: 88
166730559 TTAGGATTCT
* * * * * *
166730569 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCTGAATGGCCAATGTGATAAATGTGAGCA
1 ATGTGATAAATATGAAAATGCATATATGTGATAAAGCCGAATGGCCAA---G---AATGTGAGCA
166730634 TGCATATATGTGATAAGGCCGAATGGCCA
60 TGCATATATGTGATAAGGCCGAATGGCCA
* ** *
166730663 ATGTGATAAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAAGAATGTGAGCATGCATA
1 ATGTGATAAATATGAAAATGCATATATGTGATAAAGCCGAATGGCCAAGAATGTGAGCATGCATA
*
166730728 TGTGTGATAAGGCCGAATGGCCA
66 TATGTGATAAGGCCGAATGGCCA
* * *
166730751 ATGTGGTGAATATGAAAATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATAAATATGAAAATGCATATATGTGATAAAGCCGAATGGC
166730796 TAGTGTGAAA
Statistics
Matches: 121, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
88 76 0.63
91 1 0.01
94 44 0.36
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (88 bp):
ATGTGATAAATATGAAAATGCATATATGTGATAAAGCCGAATGGCCAAGAATGTGAGCATGCATA
TATGTGATAAGGCCGAATGGCCA
Found at i:166731016 original size:37 final size:37
Alignment explanation
Indices: 166730966--166731139 Score: 276
Period size: 37 Copynumber: 4.7 Consensus size: 37
166730956 ATTCCTGGTG
166730966 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
* * *
166731003 AGACCCGATGACTATGTGTAGAGATTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
*
166731040 AGACCCAATGACTACGTGTGGAGATTTTGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
*
166731077 AGACCCGATGACTACGTGTGGAGATTTTGTCTGGGTA
1 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
* * *
166731114 AGACCTGATAACTTCGTGTGGAGATT
1 AGACCCGATGACTACGTGTGGAGATT
166731140 ACGTCCGAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 125 1.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.28
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
Found at i:166733581 original size:6 final size:6
Alignment explanation
Indices: 166733527--166733657 Score: 72
Period size: 6 Copynumber: 21.3 Consensus size: 6
166733517 AATAAACATT
* * * * *
166733527 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAAA ATCAAA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
166733576 ATCAGA ATCAGA ATCAGA ATCAGA ATTAGGTG AT-AGA ATTAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* * *
166733625 ATCAGT ATCAGGTA A-CAGA ATCAAA ATTAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
166733658 GTGAATGCAA
Statistics
Matches: 97, Mismatches: 17, Indels: 22
0.71 0.12 0.16
Matches are distributed among these distances:
5 6 0.06
6 78 0.80
7 9 0.09
8 4 0.04
ACGTcount: A:0.50, C:0.12, G:0.18, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:166733591 original size:31 final size:31
Alignment explanation
Indices: 166733548--166733657 Score: 85
Period size: 31 Copynumber: 3.4 Consensus size: 31
166733538 AATCAAAATG
*
166733548 AGAATCAAAATCAAAATCAGGTGACAGAATC
1 AGAATCAGAATCAAAATCAGGTGACAGAATC
* * *
166733579 AGAATCAGAATCAGAATCAGAATTAGGTGATAGAATT
1 AGAATCAGAATC---A--A-AATCAGGTGACAGAATC
** *
166733616 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAAAATCAGGTGACAGAATC
* *
166733647 AAAATTAGAAT
1 AGAATCAGAAT
166733658 GTGAATGCAA
Statistics
Matches: 61, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
31 32 0.52
34 2 0.03
36 1 0.02
37 26 0.43
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATCAAAATCAGGTGACAGAATC
Found at i:166733629 original size:37 final size:37
Alignment explanation
Indices: 166733536--166733635 Score: 128
Period size: 37 Copynumber: 2.7 Consensus size: 37
166733526 TATCAGAACT
* * * *
166733536 AGAATCAAAATGAGAATCAAAATCAAAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
* *
166733573 AGAATCAGAATCAGAATCAGAATCAGAATTAGGTGAT
1 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
* *
166733610 AGAATTAGAATCAGAATCAGTATCAG
1 AGAATCAGAATCAGAATCAGAATCAG
166733636 GTAACAGAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.20
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
Found at i:166733653 original size:37 final size:36
Alignment explanation
Indices: 166733536--166733657 Score: 119
Period size: 37 Copynumber: 3.5 Consensus size: 36
166733526 TATCAGAACT
* * *
166733536 AGAATCAAAATGAGAATCAAAATCAAAATCAGGTGAC
1 AGAATCAAAATTAGAATCAGAATCAGAATCAGGT-AC
* * *
166733573 AGAATCAGAATCAGAATCAGAATCAGAATTAGGT--
1 AGAATCAAAATTAGAATCAGAATCAGAATCAGGTAC
* *
166733607 -G-AT-AGAATTAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATTAGAATCAGAATCAGAATCAGGT-AC
166733641 AGAATCAAAATTAGAAT
1 AGAATCAAAATTAGAAT
166733658 GTGAATGCAA
Statistics
Matches: 70, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
31 25 0.36
32 2 0.03
33 1 0.01
35 1 0.01
36 2 0.03
37 39 0.56
ACGTcount: A:0.50, C:0.11, G:0.18, T:0.20
Consensus pattern (36 bp):
AGAATCAAAATTAGAATCAGAATCAGAATCAGGTAC
Found at i:166734192 original size:27 final size:27
Alignment explanation
Indices: 166734162--166734436 Score: 334
Period size: 27 Copynumber: 10.2 Consensus size: 27
166734152 AACACCCTAG
** *
166734162 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
166734189 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
166734216 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
166734243 GGATAAAACAATAATTTTGTAAATCAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
166734270 GGGTAAAATAGTAATTCTGTCAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
166734297 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
166734324 GGGTAAAACAATAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* **
166734351 TGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
166734378 GGGTAAAATAATAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
166734405 GGGTAAAACAGTAATTTTGTAATTCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
166734432 GGGTA
1 GGGTA
166734437 CTTTGATAAT
Statistics
Matches: 210, Mismatches: 38, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 210 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTGTAAATCGA
Found at i:166734230 original size:54 final size:54
Alignment explanation
Indices: 166734162--166734436 Score: 370
Period size: 54 Copynumber: 5.1 Consensus size: 54
166734152 AACACCCTAG
* * *
166734162 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGA
* ** *
166734216 GGGTAAAATAGTAATTTTGTAAATCGAGGATAAAACAATAATTTTGTAAATCAA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGA
* * * *
166734270 GGGTAAAATAGTAATTCTGTCAATCGAGGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGA
* * * * *
166734324 GGGTAAAACAATAATTTTGTAAATTGATGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGA
* * * *
166734378 GGGTAAAATAATAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGTAATTCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGA
166734432 GGGTA
1 GGGTA
166734437 CTTTGATAAT
Statistics
Matches: 190, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 190 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (54 bp):
GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGA
Found at i:166734300 original size:81 final size:81
Alignment explanation
Indices: 166734173--166734436 Score: 384
Period size: 81 Copynumber: 3.3 Consensus size: 81
166734163 GGTAAAATGG
* * *
166734173 TAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTAA
1 TAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAA
*
166734238 ATCGAGGATAAAACAA
66 ATCGAGGGTAAAACAA
* * * ** *
166734254 TAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTCAATCGAGGGTAAAACGGTAATTCTATAA
1 TAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAA
166734319 ATCGAGGGTAAAACAA
66 ATCGAGGGTAAAACAA
* * * *
166734335 TAATTTTGTAAATTGATGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATAATAATTCTGTAA
1 TAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAA
*
166734400 ATCGAGGGTAAAACAG
66 ATCGAGGGTAAAACAA
*
166734416 TAATTTTGTAATTCGAGGGTA
1 TAATTTTGTAAATCGAGGGTA
166734437 CTTTGATAAT
Statistics
Matches: 159, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 159 1.00
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.31
Consensus pattern (81 bp):
TAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAA
ATCGAGGGTAAAACAA
Found at i:166734458 original size:27 final size:26
Alignment explanation
Indices: 166734428--166734561 Score: 135
Period size: 27 Copynumber: 5.0 Consensus size: 26
166734418 ATTTTGTAAT
* **
166734428 TCGAGGGTACTTTGATAATTTTACATG
1 TCGAGGGTA-TTTGGTAATTTTACAAA
* *
166734455 TCGAAGGTATTTCAGTAATTTTACAAA
1 TCGAGGGTATTT-GGTAATTTTACAAA
166734482 -CTGAGGGTATTTCGGTAATTTTACAAA
1 TC-GAGGGTATTT-GGTAATTTTACAAA
* *
166734509 TCGAGGATATTTGGGTAATTTTATAAA
1 TCGAGGGTATTT-GGTAATTTTACAAA
*
166734536 CCGAGGGTACTTTGGTAATTTTACAA
1 TCGAGGGTA-TTTGGTAATTTTACAA
166734562 CTGGGGGTAT
Statistics
Matches: 90, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
26 4 0.04
27 82 0.91
28 4 0.04
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (26 bp):
TCGAGGGTATTTGGTAATTTTACAAA
Found at i:166734471 original size:54 final size:52
Alignment explanation
Indices: 166734413--166734582 Score: 180
Period size: 54 Copynumber: 3.2 Consensus size: 52
166734403 GAGGGTAAAA
* * * **
166734413 CAGTAATTTTGTAATTCGAGGGTACTTTGATAATTTTACATGTCGAAGGTATTT
1 CAGTAATTTTATAA-ACGAGGGTACTTTGGTAATTTTACAAATCG-AGGTATTT
*
166734467 CAGTAATTTTACAAACTGAGGGTA-TTTCGGTAATTTTACAAATCGAGGATATTT
1 CAGTAATTTTATAAAC-GAGGGTACTTT-GGTAATTTTACAAATCGAGG-TATTT
** * * *
166734521 GGGTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAACTGGGGGTATTT
1 CAGTAATTTTATAAA-CGAGGGTACTTTGGTAATTTTACAAATCGAGGTATTT
166734574 CAGTAATTT
1 CAGTAATTT
166734583 GGTAAACTAA
Statistics
Matches: 97, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
53 19 0.20
54 74 0.76
55 4 0.04
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.39
Consensus pattern (52 bp):
CAGTAATTTTATAAACGAGGGTACTTTGGTAATTTTACAAATCGAGGTATTT
Found at i:166734500 original size:81 final size:80
Alignment explanation
Indices: 166734413--166734588 Score: 185
Period size: 81 Copynumber: 2.2 Consensus size: 80
166734403 GAGGGTAAAA
* * ***
166734413 CAGTAATTTTGTAATTCGAGGGTACTTT-GATAATTTTACATGTCGAAGGTA-TTTCAGTAATTT
1 CAGTAATTTTGTAAATCGAGGATA-TTTGGATAATTTTACAAACCGAAGGTACTTT-AGTAATTT
166734476 TACAAACTGAGGGTATTT
64 TAC-AACTGAGGGTATTT
* ** * * * *
166734494 CGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAACCGAGGGTACTTTGGTAATTTTA
1 CAGTAATTTTGTAAATCGAGGATATTTGGATAATTTTACAAACCGAAGGTACTTTAGTAATTTTA
*
166734559 CAACTGGGGGTATTT
66 CAACTGAGGGTATTT
*
166734574 CAGTAATTTGGTAAA
1 CAGTAATTTTGTAAA
166734589 CTAAAGTATT
Statistics
Matches: 76, Mismatches: 17, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
80 27 0.36
81 46 0.61
82 3 0.04
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (80 bp):
CAGTAATTTTGTAAATCGAGGATATTTGGATAATTTTACAAACCGAAGGTACTTTAGTAATTTTA
CAACTGAGGGTATTT
Found at i:166734579 original size:26 final size:26
Alignment explanation
Indices: 166734460--166734582 Score: 131
Period size: 27 Copynumber: 4.6 Consensus size: 26
166734450 ACATGTCGAA
*
166734460 GGTATTTCAGTAATTTTACAAACTGAG
1 GGTATTTCGGTAATTTTAC-AACTGAG
*
166734487 GGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAACT-GAG
* * * *
166734514 GATATTTGGGTAATTTTATAAACCGAG
1 GGTATTTCGGTAATTTTA-CAACTGAG
*
166734541 GGTACTTT-GGTAATTTTACAACTGGG
1 GGTA-TTTCGGTAATTTTACAACTGAG
*
166734567 GGTATTTCAGTAATTT
1 GGTATTTCGGTAATTT
166734583 GGTAAACTAA
Statistics
Matches: 80, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
25 3 0.04
26 19 0.24
27 53 0.66
28 5 0.06
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (26 bp):
GGTATTTCGGTAATTTTACAACTGAG
Found at i:166737636 original size:28 final size:28
Alignment explanation
Indices: 166737571--166737671 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
166737561 ATAGTGAATC
*
166737571 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
166737600 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
166737628 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
166737658 CGCACACTTAGTGC
1 CGCACACTTAGTGC
166737672 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:166745393 original size:27 final size:27
Alignment explanation
Indices: 166745363--166745424 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
166745353 GATGGGTCAT
*
166745363 AAATACCCTCGGT-TTGGAAAATGACCG
1 AAATACCCT-GGTAGTGGAAAATGACCG
* *
166745390 AAATACCCTTGTAGTGTAAAATGACCG
1 AAATACCCTGGTAGTGGAAAATGACCG
*
166745417 TAATACCC
1 AAATACCC
166745425 CTGTATGGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (27 bp):
AAATACCCTGGTAGTGGAAAATGACCG
Found at i:166745696 original size:22 final size:22
Alignment explanation
Indices: 166745671--166745721 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
166745661 GTTGCTGTGA
166745671 TGTCTACGGTGTTGACCCGTCC
1 TGTCTACGGTGTTGACCCGTCC
**
166745693 TGTCTACGGTGTTGAGTCGTCC
1 TGTCTACGGTGTTGACCCGTCC
166745715 TGTCTAC
1 TGTCTAC
166745722 AAGGTTTAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.10, C:0.27, G:0.27, T:0.35
Consensus pattern (22 bp):
TGTCTACGGTGTTGACCCGTCC
Found at i:166753989 original size:79 final size:81
Alignment explanation
Indices: 166753888--166754072 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
166753878 ACGACTCGCT
** * *
166753888 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
166753951 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
166753968 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
166754032 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
166754048 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
166754073 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:166754072 original size:40 final size:39
Alignment explanation
Indices: 166753881--166754072 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
166753871 GGATATAACG
* ** * *
166753881 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
166753921 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
166753961 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
166754000 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
166754040 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
166754073 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:166760145 original size:27 final size:27
Alignment explanation
Indices: 166760115--166760176 Score: 92
Period size: 26 Copynumber: 2.3 Consensus size: 27
166760105 AATTACTAAA
166760115 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
*
166760142 ATACCCCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
166760168 ATACCCCTA
1 ATACCCCTA
166760177 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 2 0.06
26 22 0.69
27 8 0.25
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:166760321 original size:28 final size:27
Alignment explanation
Indices: 166760281--166760390 Score: 134
Period size: 27 Copynumber: 4.0 Consensus size: 27
166760271 GGAGGAATCG
166760281 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCAC-AATATCTGT
*
166760309 TTCTGGTGGCTCTGCCACAAATATCT-A
1 TTCTGGTGGCTCTGCCAC-AATATCTGT
*
166760336 TTCTGATAGG-TCTGCCACAATATCTGT
1 TTCTGGT-GGCTCTGCCACAATATCTGT
* * *
166760363 ATCTGGTGACTCTGTCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAATATCTGT
166760390 T
1 T
166760391 CTAGCAGCCA
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.11
27 35 0.49
28 28 0.39
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAATATCTGT
Found at i:166764149 original size:27 final size:26
Alignment explanation
Indices: 166764082--166764196 Score: 158
Period size: 27 Copynumber: 4.3 Consensus size: 26
166764072 TGGAGGAAGC
166764082 GTTCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
166764109 ATTTCTGGTGGCTCTGCCACAAATATCT
1 -GTTCTGGTGGCTCTGCCAC-AATATCT
166764137 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
166764163 GTATCTGGTGACTTTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
166764190 GTTCTGG
1 GTTCTGG
166764197 CAGCCATGCT
Statistics
Matches: 81, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
26 14 0.17
27 41 0.51
28 26 0.32
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:166768367 original size:49 final size:49
Alignment explanation
Indices: 166768253--166768514 Score: 456
Period size: 49 Copynumber: 5.4 Consensus size: 49
166768243 TACATATATG
* * * * *
166768253 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCA--TATG
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
166768300 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
166768349 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
166768398 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
166768447 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
166768496 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
166768515 TAATGTAAAA
Statistics
Matches: 207, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 39 0.19
49 168 0.81
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:166768666 original size:37 final size:37
Alignment explanation
Indices: 166768616--166768700 Score: 143
Period size: 37 Copynumber: 2.3 Consensus size: 37
166768606 GGAATATGTT
*
166768616 CCGGGTGAGACCCGATGACTACGTGTAGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTAGAGATTATGA
* *
166768653 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTAGAGATTATGA
166768690 CCGGGTAAGAC
1 CCGGGTAAGAC
166768701 TTCGTAATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.26, C:0.20, G:0.33, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTAGAGATTATGA
Found at i:166775310 original size:40 final size:39
Alignment explanation
Indices: 166775250--166775413 Score: 168
Period size: 40 Copynumber: 4.1 Consensus size: 39
166775240 CGGAATTTAA
* ** *
166775250 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAA-TGCCTTCGGGTCTTAGC
* *** *
166775290 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGC
166775330 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGC
* * *
166775370 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTCTTAGC
166775410 CCGG
1 CCGG
166775414 GTATCATTCA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
40 101 0.97
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CCGGATATAACAACTCGCACAATGCCTTCGGGTCTTAGC
Found at i:166775394 original size:80 final size:80
Alignment explanation
Indices: 166775250--166775413 Score: 213
Period size: 80 Copynumber: 2.0 Consensus size: 80
166775240 CGGAATTTAA
* * ** *
166775250 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
*
166775315 CCTTCGGGTCTTAGC
66 CCTTCGGGACTTAGC
** * * *
166775330 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
166775394 GCCTTCGGGACTTAGC
65 GCCTTCGGGACTTAGC
166775410 CCGG
1 CCGG
166775414 GTATCATTCA
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 70 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGGGACTTAGC
Found at i:166783344 original size:40 final size:39
Alignment explanation
Indices: 166783284--166783447 Score: 168
Period size: 40 Copynumber: 4.1 Consensus size: 39
166783274 CGGAATTTAA
* ** *
166783284 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAA-TGCCTTCGGGTCTTAGC
* *** *
166783324 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGC
166783364 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGC
* * *
166783404 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTCTTAGC
166783444 CCGG
1 CCGG
166783448 GTATCATTCA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
40 101 0.97
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CCGGATATAACAACTCGCACAATGCCTTCGGGTCTTAGC
Found at i:166783428 original size:80 final size:80
Alignment explanation
Indices: 166783284--166783447 Score: 213
Period size: 80 Copynumber: 2.0 Consensus size: 80
166783274 CGGAATTTAA
* * ** *
166783284 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
*
166783349 CCTTCGGGTCTTAGC
66 CCTTCGGGACTTAGC
** * * *
166783364 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
166783428 GCCTTCGGGACTTAGC
65 GCCTTCGGGACTTAGC
166783444 CCGG
1 CCGG
166783448 GTATCATTCA
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 70 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGGGACTTAGC
Found at i:166790975 original size:40 final size:39
Alignment explanation
Indices: 166790848--166790977 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
166790838 ATGCTGGAAA
* * *
166790848 TTATATCTGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
166790888 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
166790928 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
166790968 TTATATCCGG
1 TTATATCCGG
166790978 TTGTAGTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:166793160 original size:30 final size:30
Alignment explanation
Indices: 166793126--166793186 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
166793116 TCCTTAACTC
166793126 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
166793156 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
166793186 A
1 A
166793187 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:166797879 original size:42 final size:42
Alignment explanation
Indices: 166797803--166797899 Score: 149
Period size: 42 Copynumber: 2.3 Consensus size: 42
166797793 CTAAGGCTAT
* * *
166797803 GTGTAAGACCATATCTGGGATATGGCATCTATATGAGACTTC
1 GTGTAAGACCATATCTGAGATATGCCATCGATATGAGACTTC
* *
166797845 GTGTAAGACCATATTTGAGATGTGCCATCGATATGAGACTTC
1 GTGTAAGACCATATCTGAGATATGCCATCGATATGAGACTTC
166797887 GTGTAAGACCATA
1 GTGTAAGACCATA
166797900 GCTGGACTAT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATATCTGAGATATGCCATCGATATGAGACTTC
Found at i:166803420 original size:22 final size:24
Alignment explanation
Indices: 166803377--166803429 Score: 74
Period size: 22 Copynumber: 2.2 Consensus size: 24
166803367 CTTCTTGATT
166803377 TATTTAATTTGTTTATTCATTTTTG
1 TATTT-ATTTGTTTATTCATTTTTG
*
166803402 T-TTTATTTG-TTATTTATTTTTG
1 TATTTATTTGTTTATTCATTTTTG
166803424 TATTTA
1 TATTTA
166803430 GTTCCCGATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 13 0.50
23 9 0.35
24 3 0.12
25 1 0.04
ACGTcount: A:0.19, C:0.02, G:0.08, T:0.72
Consensus pattern (24 bp):
TATTTATTTGTTTATTCATTTTTG
Found at i:166810928 original size:79 final size:81
Alignment explanation
Indices: 166810793--166810976 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
166810783 TCGAATGATG
* * *
166810793 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGACTAAGATCCGAAGGCATTC
*
166810857 GTGCGAGTTAATA-AA
66 GTGCGAGTCAATATAA
* **
166810872 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCC-GACTAAGAT-CCGAAGGCAT
*
166810934 TCGTGCGAGTCACTATAA
64 TCGTGCGAGTCAATATAA
**
166810952 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
166810977 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 21 0.23
79 53 0.59
80 16 0.18
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGACTAAGATCCGAAGGCATTC
GTGCGAGTCAATATAA
Found at i:166810933 original size:40 final size:40
Alignment explanation
Indices: 166810793--166810976 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
166810783 TCGAATGATG
* *
166810793 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * * *
166810833 TCC-GACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
166810872 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * * * *
166810911 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
**
166810952 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
166810977 AGCGAGTCGT
Statistics
Matches: 117, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
39 56 0.48
40 59 0.50
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:166811007 original size:79 final size:79
Alignment explanation
Indices: 166810844--166811009 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
166810834 CCGACTAGGA
* * *
166810844 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
*
166810909 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * ** * **
166810923 CCCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGT
1 TCCGAAGGCATTCGTGCGAGTCAATA-AATCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCAC
* *
166810987 TATATCC-GGTTAAAT
64 TAAACCCGGGTTAAAT
166811002 TCCGAAGG
1 TCCGAAGG
166811010 TACGTGATTC
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
79 45 0.63
80 26 0.37
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
AACCCGGGTTAAAT
Found at i:166813750 original size:5 final size:6
Alignment explanation
Indices: 166813715--166813758 Score: 52
Period size: 6 Copynumber: 6.7 Consensus size: 6
166813705 GTTTAAAGAC
166813715 TTTTAT TTATTAT TTTTATGT TTTTAT TTTTAT TTTTAT CTTTT
1 TTTTAT TT-TTAT TTTTA--T TTTTAT TTTTAT TTTTAT -TTTT
166813759 CAAAACTACT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
6 18 0.53
7 10 0.29
8 6 0.18
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTTAT
Found at i:166813758 original size:14 final size:13
Alignment explanation
Indices: 166813715--166813751 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
166813705 GTTTAAAGAC
*
166813715 TTTTATTTATTAT
1 TTTTATTTTTTAT
166813728 TTTTATGTTTTTAT
1 TTTTAT-TTTTTAT
166813742 TTTTATTTTT
1 TTTTATTTTT
166813752 ATCTTTTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:166820501 original size:41 final size:41
Alignment explanation
Indices: 166820456--166820573 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
166820446 TGAAAGATAA
166820456 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
166820497 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
166820527 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
166820568 ATGTAG
1 ATGTAG
166820574 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:166820513 original size:71 final size:71
Alignment explanation
Indices: 166820424--166820587 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
166820414 GAGATGTATC
*
166820424 CCATGTAGGCAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
166820489 AGGACA
66 AGGACA
166820495 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
166820560 AGGACA
66 AGGACA
166820566 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
166820588 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:166828071 original size:41 final size:41
Alignment explanation
Indices: 166828026--166828143 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
166828016 TGAAAGATAA
166828026 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
166828067 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
166828097 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
166828138 ATGTAG
1 ATGTAG
166828144 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:166828082 original size:71 final size:71
Alignment explanation
Indices: 166827994--166828157 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
166827984 GAGATGTATC
166827994 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
166828059 AGGACA
66 AGGACA
166828065 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
166828130 AGGACA
66 AGGACA
166828136 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
166828158 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:166834209 original size:40 final size:39
Alignment explanation
Indices: 166834164--166834293 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
166834154 CGGAATATAA
166834164 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
166834204 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
166834244 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
166834284 CCGGATATAA
1 CCGGATATAA
166834294 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:166834308 original size:40 final size:40
Alignment explanation
Indices: 166834180--166834331 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
166834170 ATAACCATGT
* * *
166834180 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
166834220 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
166834260 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
166834300 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
166834332 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:166834314 original size:80 final size:80
Alignment explanation
Indices: 166834180--166834329 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
166834170 ATAACCATGT
*
166834180 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
166834244 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
166834260 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
166834323 CCCGGAT
64 CCCGGAT
166834330 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:166840399 original size:14 final size:14
Alignment explanation
Indices: 166840380--166840407 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
166840370 CAGAGGAAAC
166840380 TATGAGGAGTCAAT
1 TATGAGGAGTCAAT
166840394 TATGAGGAGTCAAT
1 TATGAGGAGTCAAT
166840408 ATCCGAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.29, T:0.29
Consensus pattern (14 bp):
TATGAGGAGTCAAT
Found at i:166842109 original size:41 final size:41
Alignment explanation
Indices: 166842064--166842232 Score: 132
Period size: 41 Copynumber: 4.1 Consensus size: 41
166842054 GCACAAACAT
* *
166842064 CCTTCGGAA-TCAAGCCCGATTCTTAGCACTGGCTCAAAAGC
1 CCTTCGGAACT-AAGCCCGATTATGAGCACTGGCTCAAAAGC
* * * * *
166842105 CCTTC-GAGAC-CATCCTCGGATTA-GACCACTGGCTCGAAGGC
1 CCTTCGGA-ACTAAGCC-C-GATTATGAGCACTGGCTCAAAAGC
* * *
166842146 CCTTCGGAACTAAGTCCGGTTATGA-CACTGGCTCTAAAGC
1 CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
* ** * *
166842186 CCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTCAAAAGC
1 CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
166842227 CCTTCG
1 CCTTCG
166842233 AGACCAAGCT
Statistics
Matches: 103, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
40 44 0.43
41 51 0.50
42 8 0.08
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (41 bp):
CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
Found at i:166842233 original size:41 final size:41
Alignment explanation
Indices: 166842086--166842233 Score: 158
Period size: 41 Copynumber: 3.6 Consensus size: 41
166842076 AGCCCGATTC
* * ***
166842086 TTAGCACTGGCTCAAAAGCCCTTCGAGACCATCCTCGG--A
1 TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
* * * *
166842125 TTAGACCACTGGCTCGAAGGCCCTTCGGAACTAAGTCCGGTTA
1 TTAG--CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
* *
166842168 TGA-CACTGGCTCTAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
166842208 TTAGCACTGGCTCAAAAGCCCTTCGA
1 TTAGCACTGGCTCAAAAGCCCTTCGA
166842234 GACCAAGCTC
Statistics
Matches: 88, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
39 4 0.05
40 35 0.40
41 46 0.52
43 3 0.03
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (41 bp):
TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
Found at i:166844325 original size:37 final size:37
Alignment explanation
Indices: 166844266--166844374 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
166844256 AGCTCAGACG
* *
166844266 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
166844303 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
166844340 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
166844375 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:166844588 original size:46 final size:46
Alignment explanation
Indices: 166844520--166844656 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
166844510 AATATATACA
* * * *
166844520 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
166844566 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
166844612 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
166844657 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:166844691 original size:47 final size:47
Alignment explanation
Indices: 166844630--166844773 Score: 234
Period size: 47 Copynumber: 3.1 Consensus size: 47
166844620 ACACATTTCG
* * *
166844630 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
166844677 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
166844724 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
166844771 CAT
1 CAT
166844774 AAAATCCTAA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 90 1.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:166854432 original size:41 final size:41
Alignment explanation
Indices: 166854387--166854554 Score: 126
Period size: 41 Copynumber: 4.1 Consensus size: 41
166854377 CCTTCGGAAT
* *
166854387 CAAGCCCGATTCTTAGCACTGGCTCAAAAGCCCTTCGAGAC
1 CAAGCCCGATTATGAGCACTGGCTCAAAAGCCCTTCGAGAC
* * * *
166854428 CAAGCTCGGATTA-GACCACTGGCTCGAAGGCCCTTCG-GAAC
1 CAAGC-CCGATTATGAGCACTGGCTCAAAAGCCCTTCGAG-AC
* * * * * * * *
166854469 TAAGTCCGGTTATGA-TACTTGCTCTAAAGCCCTTTGAAAC
1 CAAGCCCGATTATGAGCACTGGCTCAAAAGCCCTTCGAGAC
* ** * *
166854509 TAAGTTCGGTTATTAGCACTGGCTCAAAAGCCCTTCGAGAC
1 CAAGCCCGATTATGAGCACTGGCTCAAAAGCCCTTCGAGAC
166854550 CAAGC
1 CAAGC
166854555 TCGGATTTAG
Statistics
Matches: 97, Mismatches: 25, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
40 37 0.38
41 55 0.57
42 5 0.05
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (41 bp):
CAAGCCCGATTATGAGCACTGGCTCAAAAGCCCTTCGAGAC
Found at i:166860006 original size:40 final size:39
Alignment explanation
Indices: 166859962--166860184 Score: 272
Period size: 39 Copynumber: 5.7 Consensus size: 39
166859952 GCCACTAGCT
*
166859962 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
166860002 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* *
166860041 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
166860081 C-AACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
166860120 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
166860160 CAAATG-CTCTC-GGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
166860185 TATCATCCGA
Statistics
Matches: 165, Mismatches: 14, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
39 90 0.55
40 75 0.45
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:166860047 original size:39 final size:40
Alignment explanation
Indices: 166859962--166860145 Score: 282
Period size: 39 Copynumber: 4.7 Consensus size: 40
166859952 GCCACTAGCT
* * *
166859962 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
166860002 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
166860041 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* * *
166860081 C-AACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
166860120 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
166860146 ATTAGCCACT
Statistics
Matches: 136, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
39 74 0.54
40 62 0.46
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
Found at i:166860060 original size:79 final size:79
Alignment explanation
Indices: 166859962--166860145 Score: 280
Period size: 79 Copynumber: 2.3 Consensus size: 79
166859952 GCCACTAGCT
* * * *
166859962 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCAC-AACGCCTTCGGGACTTAGCCCGG
166860027 -TATAATAACTCGCA
65 ATATAATAACTCGCA
*
166860041 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAACGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAACGCCTTCGGGACTTAGCCCGGA
* *
166860106 TATAGTAGCTCGCA
66 TATAATAACTCGCA
*
166860120 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
166860146 ATTAGCCACT
Statistics
Matches: 96, Mismatches: 8, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
78 22 0.23
79 74 0.77
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAACGCCTTCGGGACTTAGCCCGGA
TATAATAACTCGCA
Found at i:166860175 original size:79 final size:77
Alignment explanation
Indices: 166859962--166860184 Score: 258
Period size: 79 Copynumber: 2.8 Consensus size: 77
166859952 GCCACTAGCT
* * *
166859962 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAG--ACTAGCTCAAATGCCTTCGGGACTTAGCCCGG
166860027 TATAATAACTCGCA
64 TATAATAACTCGCA
*
166860041 CAAATGCCTTCGGGACTTAGCCCGGATATA-A-TAGCTCGCACAACGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGACTAGCT--CA-AATGCCTTCGGGACTTAGCCCG
* *
166860104 GATATAGTAGCTCGCA
63 G-TATAATAACTCGCA
*
166860120 CGAATGCCTTCGGGACTTAGCCCGGA-ATTAGCCACTAGCTCAAATG-CTCTC-GGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAG--ACTAGCTCAAATGCCT-TCGGGACTTAGCCC
166860182 GGT
62 GGT
166860185 TATCATCCGA
Statistics
Matches: 126, Mismatches: 8, Indels: 21
0.81 0.05 0.14
Matches are distributed among these distances:
75 3 0.02
76 1 0.01
77 2 0.02
78 24 0.19
79 83 0.66
80 5 0.04
81 2 0.02
82 1 0.01
83 5 0.04
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (77 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTA
TAATAACTCGCA
Found at i:166868072 original size:40 final size:40
Alignment explanation
Indices: 166868005--166868249 Score: 302
Period size: 39 Copynumber: 6.2 Consensus size: 40
166867995 CCTTCGGAGT
** * *
166868005 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
166868044 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
166868084 TTAGCCCGG-TATAATAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
166868123 TTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
166868163 TTAGCCCGGAT-TAGTAGCTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* ** * *
166868202 TTAGCCCGAAT-TAGCCACTAGCTCAAATG-CTCTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCT-TCGGGAC
166868241 TTAGCCCGG
1 TTAGCCCGG
166868250 TTATCATCCG
Statistics
Matches: 185, Mismatches: 18, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
38 2 0.01
39 105 0.57
40 78 0.42
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:166868126 original size:79 final size:80
Alignment explanation
Indices: 166868028--166868250 Score: 301
Period size: 79 Copynumber: 2.8 Consensus size: 80
166868018 GCCACTAGCT
* *
166868028 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
166868093 TA-TAATAACTCGCA
66 TATTAATAACTCGCA
* * * *
166868107 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
* *
166868172 -ATTAGTAGCTCGCA
66 TATTAATAACTCGCA
* ** *
166868186 CAAATGCCTTCGGGACTTAGCCCGAAT-TAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCT-TCGGGACTTAGCCCG
166868249 GT
65 GT
166868251 TATCATCCGA
Statistics
Matches: 126, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
77 2 0.02
78 28 0.22
79 96 0.76
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
TATTAATAACTCGCA
Found at i:166871678 original size:33 final size:30
Alignment explanation
Indices: 166871640--166871702 Score: 72
Period size: 33 Copynumber: 2.0 Consensus size: 30
166871630 TTAAGAATTT
*
166871640 TAAAAAATCCTTATTACATTAAAAATACCCAAA
1 TAAAAAATACTTA-TA-ATTAAAAA-ACCCAAA
* *
166871673 TAAAAACTACTTATAATTTAAAAACCCAAA
1 TAAAAAATACTTATAATTAAAAAACCCAAA
166871703 AAGAAAGTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 7 0.26
31 7 0.26
32 2 0.07
33 11 0.41
ACGTcount: A:0.56, C:0.17, G:0.00, T:0.27
Consensus pattern (30 bp):
TAAAAAATACTTATAATTAAAAAACCCAAA
Found at i:166872303 original size:27 final size:27
Alignment explanation
Indices: 166872246--166872305 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
166872236 AAACATCTCA
*
166872246 TAGGGGCATATCAATCATTTTACCATG
1 TAGGGGCATATCAATCATTTTACAATG
*
166872273 TAGGGGCATTTCAATCATTTTATCAAT-
1 TAGGGGCATATCAATCATTTTA-CAATG
166872300 TAGGGG
1 TAGGGG
166872306 GTTTAGGTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 27 0.90
28 3 0.10
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (27 bp):
TAGGGGCATATCAATCATTTTACAATG
Found at i:166877343 original size:14 final size:14
Alignment explanation
Indices: 166877324--166877351 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
166877314 TATATTAGTA
166877324 TTTTCTATTCTATT
1 TTTTCTATTCTATT
166877338 TTTTCTATTCTATT
1 TTTTCTATTCTATT
166877352 AGTATTAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTCTATTCTATT
Found at i:166877359 original size:6 final size:6
Alignment explanation
Indices: 166877348--166877426 Score: 66
Period size: 5 Copynumber: 14.2 Consensus size: 6
166877338 TTTTCTATTC
* *
166877348 TATTAG TATTAGAG TATTAG -ATTAG TATT-C TATT-C TATTAG TATTAG
1 TATTAG TATT--AG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
166877395 -ATTAG TATTAG --TTAG -ATTAG -ATTAG TATTAG T
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG T
166877427 TAGTGATCCC
Statistics
Matches: 64, Mismatches: 2, Indels: 14
0.80 0.03 0.17
Matches are distributed among these distances:
4 4 0.06
5 28 0.44
6 26 0.41
8 6 0.09
ACGTcount: A:0.33, C:0.03, G:0.16, T:0.48
Consensus pattern (6 bp):
TATTAG
Found at i:166877374 original size:11 final size:11
Alignment explanation
Indices: 166877349--166877430 Score: 50
Period size: 11 Copynumber: 7.5 Consensus size: 11
166877339 TTTCTATTCT
166877349 ATTAGTATTAG
1 ATTAGTATTAG
166877360 ---AGTATTAG
1 ATTAGTATTAG
**
166877368 ATTAGTATTCT
1 ATTAGTATTAG
*
166877379 ATT-CTATTAG
1 ATTAGTATTAG
166877389 TATTAG-ATTAG
1 -ATTAGTATTAG
166877400 TATTAGTTAGATTAG
1 -ATTAG-T--ATTAG
166877415 ATTAGTATTAG
1 ATTAGTATTAG
166877426 -TTAGT
1 ATTAGT
166877431 GATCCCGGCT
Statistics
Matches: 56, Mismatches: 6, Indels: 19
0.69 0.07 0.23
Matches are distributed among these distances:
8 8 0.14
10 9 0.16
11 28 0.50
13 1 0.02
14 5 0.09
15 5 0.09
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (11 bp):
ATTAGTATTAG
Found at i:166877415 original size:20 final size:21
Alignment explanation
Indices: 166877385--166877430 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
166877375 TTCTATTCTA
166877385 TTAGTATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
166877406 TTAG-ATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
166877426 TTAGT
1 TTAGT
166877431 GATCCCGGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.48
Consensus pattern (21 bp):
TTAGTATTAGATTAGTATTAG
Found at i:166885629 original size:32 final size:32
Alignment explanation
Indices: 166885588--166885649 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
166885578 CATCTATTTT
166885588 CATTGTTCAACTCTTTGACAACACGAAAAATC
1 CATTGTTCAACTCTTTGACAACACGAAAAATC
*
166885620 CATTGTTCAACTCTTTGACAACATGAAAAA
1 CATTGTTCAACTCTTTGACAACACGAAAAA
166885650 ACCAAAAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (32 bp):
CATTGTTCAACTCTTTGACAACACGAAAAATC
Found at i:166892959 original size:13 final size:13
Alignment explanation
Indices: 166892941--166892968 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
166892931 TGAAAATTCG
166892941 TTAATGGTACATT
1 TTAATGGTACATT
166892954 TTAATGGTACATT
1 TTAATGGTACATT
166892967 TT
1 TT
166892969 CCCCTATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (13 bp):
TTAATGGTACATT
Found at i:166902897 original size:21 final size:21
Alignment explanation
Indices: 166902873--166902916 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
166902863 GAATCTTTAG
*
166902873 TATTTATTGTATCATTT-TATT
1 TATTTAAT-TATCATTTCTATT
*
166902894 TATTTAATTATCCTTTCTATT
1 TATTTAATTATCATTTCTATT
166902915 TA
1 TA
166902917 ATTAGGTCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTAATTATCATTTCTATT
Found at i:166905176 original size:22 final size:22
Alignment explanation
Indices: 166905149--166905192 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
166905139 CTCTCGATTT
166905149 TTTTATTGCTCCTTTTCAATCA
1 TTTTATTGCTCCTTTTCAATCA
166905171 TTTTATTGCTCCTTTTCAATCA
1 TTTTATTGCTCCTTTTCAATCA
166905193 AAAGAGATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.23, G:0.05, T:0.55
Consensus pattern (22 bp):
TTTTATTGCTCCTTTTCAATCA
Found at i:166909346 original size:32 final size:32
Alignment explanation
Indices: 166909310--166909371 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
166909300 AGCTTTTGGT
166909310 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
1 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
*
166909342 TTTTTCGTGTTGTCAAAGAGTTGAACAATG
1 TTTTTCATGTTGTCAAAGAGTTGAACAATG
166909372 AAAATAGATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (32 bp):
TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
Found at i:166919063 original size:29 final size:30
Alignment explanation
Indices: 166919030--166919108 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 30
166919020 CGGTGACGAG
* *
166919030 ATGGCACTAAGTGTGCGTGCTGG-AAATAT
1 ATGGCACTAAGTGTGCGAGCTGGAAAATAC
*
166919059 ATGGCACTAAGTGTGCAAGCTGGAAAATAC
1 ATGGCACTAAGTGTGCGAGCTGGAAAATAC
*
166919089 ATGGCACT-GGTGTGCGAGCT
1 ATGGCACTAAGTGTGCGAGCT
166919109 CGAGGGTATG
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
29 31 0.70
30 13 0.30
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (30 bp):
ATGGCACTAAGTGTGCGAGCTGGAAAATAC
Found at i:166926887 original size:29 final size:29
Alignment explanation
Indices: 166926854--166926929 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
166926844 GACGAGATCA
* * *
166926854 GCACTAAGTGTGCGTGCTGGAAATATATG
1 GCACTAAGTGTGCGAGCTGGAAAAATACG
*
166926883 GCACTAAGTGTGCAAGCTGGAAAAATACG
1 GCACTAAGTGTGCGAGCTGGAAAAATACG
**
166926912 GCACTGGGTGTGCGAGCT
1 GCACTAAGTGTGCGAGCT
166926930 CGGAGGGTAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.28, C:0.17, G:0.33, T:0.22
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGGAAAAATACG
Found at i:166929170 original size:43 final size:42
Alignment explanation
Indices: 166929123--166929220 Score: 117
Period size: 42 Copynumber: 2.3 Consensus size: 42
166929113 TCCCAGACGT
* *
166929123 GGTCTTACATGTAATCAAATATTGATGCC-ACTGTCCCAAACAG
1 GGTCTTACATGTAATCAAATA-CGATACCGA-TGTCCCAAACAG
* * * *
166929166 GGTCTTAAACGAAATCAAATACGATACCGATGTCCCAAACAT
1 GGTCTTACATGTAATCAAATACGATACCGATGTCCCAAACAG
166929208 GGTCTTACATGTA
1 GGTCTTACATGTA
166929221 CATCTCAAAT
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
42 26 0.58
43 19 0.42
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAATACGATACCGATGTCCCAAACAG
Found at i:166930372 original size:13 final size:13
Alignment explanation
Indices: 166930354--166930378 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
166930344 CACAAACAAT
166930354 AAAATTTTCACAC
1 AAAATTTTCACAC
166930367 AAAATTTTCACA
1 AAAATTTTCACA
166930379 GATATCAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:166931247 original size:24 final size:24
Alignment explanation
Indices: 166931220--166931295 Score: 93
Period size: 24 Copynumber: 3.1 Consensus size: 24
166931210 GATATATCAA
*
166931220 CTCGTAAGAGCTTACTGTTCTCAG
1 CTCGTAAGAGCTTACTATTCTCAG
*
166931244 CTCGTCAGAGCTTACTATT-TCTAG
1 CTCGTAAGAGCTTACTATTCTC-AG
166931268 CTCG-ATAGAGCTTACTATTCATCAG
1 CTCGTA-AGAGCTTACTATTC-TCAG
166931293 CTC
1 CTC
166931296 AGGAGGAGTT
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
23 2 0.04
24 36 0.80
25 5 0.11
26 2 0.04
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.34
Consensus pattern (24 bp):
CTCGTAAGAGCTTACTATTCTCAG
Found at i:166933658 original size:17 final size:17
Alignment explanation
Indices: 166933632--166933679 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
166933622 GATAAGTATA
* *
166933632 CATTGCCATTGCATTTT
1 CATTGTCATTGCATTCT
*
166933649 CATTGTCATTACATTCT
1 CATTGTCATTGCATTCT
*
166933666 CA-TGTCAGTGCATT
1 CATTGTCATTGCATT
166933680 GTCCATTGGG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 10 0.38
17 16 0.62
ACGTcount: A:0.21, C:0.23, G:0.12, T:0.44
Consensus pattern (17 bp):
CATTGTCATTGCATTCT
Found at i:166941345 original size:18 final size:18
Alignment explanation
Indices: 166941322--166941357 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
166941312 ATTGAGCATT
166941322 CATCAATCTCAAAGGAAA
1 CATCAATCTCAAAGGAAA
166941340 CATCAATCTCAAAGGAAA
1 CATCAATCTCAAAGGAAA
166941358 AAGAGATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.22, G:0.11, T:0.17
Consensus pattern (18 bp):
CATCAATCTCAAAGGAAA
Found at i:166943662 original size:40 final size:39
Alignment explanation
Indices: 166943497--166943680 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
166943487 AAATTGAATG
* * *
166943497 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
166943537 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
166943577 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
166943617 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
166943656 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
166943681 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:166943705 original size:80 final size:81
Alignment explanation
Indices: 166943537--166943725 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
166943527 GCTGGAAATT
* * * *
166943537 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
166943602 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
166943618 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
166943681 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
166943697 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
166943726 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:166945897 original size:28 final size:28
Alignment explanation
Indices: 166945865--166945922 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
166945855 GTACCAGGAA
166945865 TGACATCTGGAGCTGAGGCCTTCTCTTG
1 TGACATCTGGAGCTGAGGCCTTCTCTTG
166945893 TGACATCTGGAGCTGAGGCCTTCTCTTG
1 TGACATCTGGAGCTGAGGCCTTCTCTTG
166945921 TG
1 TG
166945923 CACAATTACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.14, C:0.24, G:0.29, T:0.33
Consensus pattern (28 bp):
TGACATCTGGAGCTGAGGCCTTCTCTTG
Found at i:166949188 original size:40 final size:40
Alignment explanation
Indices: 166949105--166949257 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
166949095 TCGAATGATG
* *
166949105 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
166949145 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
166949185 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
166949226 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
166949258 CGCTATATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 81 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:166953750 original size:39 final size:39
Alignment explanation
Indices: 166953673--166953860 Score: 324
Period size: 39 Copynumber: 4.8 Consensus size: 39
166953663 TGTTCGGGTA
166953673 ATATCCGGGCTAAGCCCGAAGGC-ATTGTGCGAGTTGTG
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
166953711 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
* *
166953750 ATATCCAGGCTAAGCCCGAAGGCAATTGTGTGAGTTGTG
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
166953789 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
* *
166953828 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 ATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
166953861 GGCTACCATA
Statistics
Matches: 142, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
38 23 0.16
39 102 0.72
40 17 0.12
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
Found at i:166961769 original size:40 final size:40
Alignment explanation
Indices: 166961715--166961871 Score: 246
Period size: 40 Copynumber: 4.0 Consensus size: 40
166961705 NNNNNNNNNA
166961715 GATAT-ACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
1 GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
*
166961754 GATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCG
1 GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
*
166961794 GATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
1 GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
* * *
166961834 GATATAATC-ACTAGCATAAATGCCTTCGGGGCTTAGCC
1 GATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAGCC
166961872 GGGTATCATT
Statistics
Matches: 109, Mismatches: 7, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
39 5 0.05
40 103 0.94
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
Done.