Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 537 of 770
Found at i:166969880 original size:40 final size:40
Alignment explanation
Indices: 166969815--166970060 Score: 356
Period size: 40 Copynumber: 6.2 Consensus size: 40
166969805 TCTTCGGAAT
* ** *
166969815 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
166969854 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
166969894 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
166969934 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* *
166969974 TTAACCCGGATATAGCAACTCG-ACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* *
166970013 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGG-C
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
166970052 TTAGCCCGG
1 TTAGCCCGG
166970061 GTATCATTCA
Statistics
Matches: 188, Mismatches: 16, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
39 47 0.25
40 141 0.75
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:166977580 original size:46 final size:46
Alignment explanation
Indices: 166977513--166977687 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
166977503 TGTAACCCGC
166977513 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTTCACAT
*
166977559 CCATAAGTGAACTCGGACTCAACTCAACTAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CT--TTCACAT
* * ** * *
166977609 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTTCACAT
*
166977652 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
166977688 ATGCCCAAAC
Statistics
Matches: 108, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
46 62 0.57
47 25 0.23
48 1 0.01
49 2 0.02
50 6 0.06
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTTCACAT
Found at i:166977633 original size:93 final size:93
Alignment explanation
Indices: 166977521--166977692 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
166977511 GCCCATAAGT
** *
166977521 GAACTCGGACTCAACTCAACGAGCTCGGGCTTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
166977586 CTAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
166977614 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
166977679 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
166977693 CAAACATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:166977707 original size:46 final size:46
Alignment explanation
Indices: 166977518--166977707 Score: 142
Period size: 46 Copynumber: 4.1 Consensus size: 46
166977508 CCCGCCCATA
**
166977518 AGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CTTTCACATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAT-ACATCC-T
* *
166977563 AAGTGAACTCGGACTCAACTCAACTAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCA--TACATC-CT
* * * * * * *
166977613 --CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGCTCG--GATGCCCATACATCCT
* *
166977657 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCATACATCCT
166977703 AGTGA
1 AGTGA
166977708 CATGTCACTT
Statistics
Matches: 114, Mismatches: 18, Indels: 24
0.73 0.12 0.15
Matches are distributed among these distances:
44 8 0.07
46 62 0.54
47 29 0.25
48 1 0.01
49 6 0.05
50 6 0.05
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCATACATCCT
Found at i:166984183 original size:40 final size:40
Alignment explanation
Indices: 166984078--166984294 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
166984068 CGGATGATAA
* *
166984078 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
166984118 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
166984157 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
166984197 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
166984237 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
166984277 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
166984295 TACTTGGTTT
Statistics
Matches: 166, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 51 0.31
40 115 0.69
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:166984292 original size:119 final size:119
Alignment explanation
Indices: 166984074--166984294 Score: 331
Period size: 119 Copynumber: 1.9 Consensus size: 119
166984064 TATTCGGATG
* *
166984074 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* * *
166984139 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TTGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACT
*
166984193 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
*
166984257 ATTTGAGCAAG-TAGCTATATCC-GGCTAAATTCCGAAGG
64 ATTTGAGCAAGTTA-CTATATCCGGGCTAAATCCCGAAGG
166984295 TACTTGGTTT
Statistics
Matches: 92, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
118 2 0.02
119 64 0.70
120 26 0.28
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACT
Found at i:166992263 original size:40 final size:40
Alignment explanation
Indices: 166992164--166992372 Score: 236
Period size: 40 Copynumber: 5.4 Consensus size: 40
166992154 TGATAACCGG
* * *
166992164 GCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGA
*
166992204 GCTAAG-CCCGAAGGCATTTGTACGAGTTACTATATCCGA
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGA
*
166992243 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGA
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGA
* *
166992283 GC----TCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGA
* * *
166992319 GCTAAGTCCTGAAGGCATTTGAGCAAG-TAGCTATATCCG-
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGA
* *
166992358 GCTAAATTCCGAAGG
1 GCTAAGTCCCGAAGG
166992373 TACTTGGTTT
Statistics
Matches: 148, Mismatches: 14, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
36 35 0.24
39 47 0.32
40 66 0.45
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGA
Found at i:166992296 original size:36 final size:36
Alignment explanation
Indices: 166992170--166992317 Score: 163
Period size: 36 Copynumber: 3.9 Consensus size: 36
166992160 CCGGGCTAAG
* * * *
166992170 TCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGC
1 TCCCGAAGGCATTTGTGCGAGTTACTATA-ACCGAGC
* *
166992206 TAAGCCCGAAGGCATTTGTACGAGTTACTATATCCGAGC
1 T---CCCGAAGGCATTTGTGCGAGTTACTATAACCGAGC
166992245 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGAGC
1 ----TCCCGAAGGCATTTGTGCGAGTTACTATAACCGAGC
166992285 TCCCGAAGGCATTTGTGCGAGTTACTATAACCG
1 TCCCGAAGGCATTTGTGCGAGTTACTATAACCG
166992318 GGCTAAGTCC
Statistics
Matches: 98, Mismatches: 6, Indels: 16
0.82 0.05 0.13
Matches are distributed among these distances:
36 34 0.35
39 29 0.30
40 34 0.35
43 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (36 bp):
TCCCGAAGGCATTTGTGCGAGTTACTATAACCGAGC
Found at i:166992353 original size:76 final size:78
Alignment explanation
Indices: 166992156--166992361 Score: 246
Period size: 76 Copynumber: 2.7 Consensus size: 78
166992146 TATTCGGATG
* * *
166992156 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTA-ATTCCGGGCTAAGCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CTATATACCGAGCT-A-CCCGAAGGC
166992219 ATTTGTACGAGTTACT
63 ATTTGTACGAGTTACT
* * *
166992235 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA-ACCGAGCT-CCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATACCGAGCTACCCGAAGGCAT
*
166992297 TTGTGCGAGTTACT
65 TTGTACGAGTTACT
* *
166992311 ATAACCGGGCTAAGTCCTGAAGGCATTTGAGCAAGTAGCTATAT-CCG-GCTA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATACCGAGCTA
166992362 AATTCCGAAG
Statistics
Matches: 110, Mismatches: 11, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
75 5 0.05
76 62 0.56
79 41 0.37
80 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (78 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATACCGAGCTACCCGAAGGCATT
TGTACGAGTTACT
Found at i:166997725 original size:26 final size:26
Alignment explanation
Indices: 166997689--166997750 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
166997679 GGGTGTTACA
*
166997689 AAAATTTTGACAATTTTACCCT-TGAT
1 AAAATTTTGACAATTTTACCCTCAG-T
*
166997715 AAAATTTTGACGATTTTACCCTCAGT
1 AAAATTTTGACAATTTTACCCTCAGT
166997741 AAAATTTTGA
1 AAAATTTTGA
166997751 GAAAAATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 32 0.97
27 1 0.03
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (26 bp):
AAAATTTTGACAATTTTACCCTCAGT
Found at i:166997892 original size:6 final size:6
Alignment explanation
Indices: 166997878--166997916 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
166997868 GGATTGCAAG
* *
166997878 TTTCGA TTTCCA TTTCCA TTTCCA TTTCCA TTTCTA TTT
1 TTTCCA TTTCCA TTTCCA TTTCCA TTTCCA TTTCCA TTT
166997917 TTTGAAACCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.15, C:0.26, G:0.03, T:0.56
Consensus pattern (6 bp):
TTTCCA
Found at i:167000009 original size:29 final size:29
Alignment explanation
Indices: 166999967--167000039 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
166999957 GTGACAAGAT
166999967 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
166999996 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
167000025 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
167000040 GAATTTAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCAAGCTTGAAAAGTA
Found at i:167000058 original size:29 final size:29
Alignment explanation
Indices: 167000026--167000098 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
167000016 TGAAAAGTAT
* * *
167000026 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
167000055 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
167000084 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
167000099 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:167007592 original size:18 final size:18
Alignment explanation
Indices: 167007554--167007592 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
167007544 GGCCGCACAC
* * *
167007554 TTAGAGCATGTATATTTA
1 TTAGAGAATGTATAATAA
167007572 TTAGAGAATGTATAATAA
1 TTAGAGAATGTATAATAA
167007590 TTA
1 TTA
167007593 AGCACACTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.03, G:0.15, T:0.41
Consensus pattern (18 bp):
TTAGAGAATGTATAATAA
Found at i:167007664 original size:28 final size:28
Alignment explanation
Indices: 167007594--167007691 Score: 117
Period size: 28 Copynumber: 3.5 Consensus size: 28
167007584 TAATAATTAA
*
167007594 GCACACTTAGTGCT-TAATAGTCGAACTC
1 GCACACTTAGTGCTAT-ATAATCGAACTC
* *
167007622 ACACACTTAGTGCTATATAATCAAACTC
1 GCACACTTAGTGCTATATAATCGAACTC
* * *
167007650 GCACACTTAGTGCTATACAATTTGAACCC
1 GCACACTTAGTGCTATATAA-TCGAACTC
167007679 GCACACTTAGTGC
1 GCACACTTAGTGC
167007692 CAATTCATGA
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
28 41 0.68
29 19 0.32
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.28
Consensus pattern (28 bp):
GCACACTTAGTGCTATATAATCGAACTC
Found at i:167014684 original size:28 final size:28
Alignment explanation
Indices: 167014619--167014724 Score: 146
Period size: 27 Copynumber: 3.9 Consensus size: 28
167014609 GAGGAAGCGT
*
167014619 TCTGGTGGCTCTGCCAAAAATATCTG-A
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
167014646 TCTGGTGGCTCTACCACAAATATCTGTT
1 TCTGGTGGCTCTGCCACAAATATCTGTA
167014674 TCTGGTGGCTCTGCCAC-AATATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
167014701 TCTGGTGACTCTGTCAC-AATATCT
1 TCTGGTGGCTCTGCCACAAATATCT
167014725 ATTCTGGCAG
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
27 55 0.77
28 16 0.23
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.34
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:167014719 original size:55 final size:54
Alignment explanation
Indices: 167014618--167014724 Score: 153
Period size: 55 Copynumber: 2.0 Consensus size: 54
167014608 GGAGGAAGCG
*
167014618 TTCTGGTGGCTCTGCCAAAAATATCTGATCTGGTGGCTCTACCACAAATATCTGT
1 TTCTGGTGGCTCTGCCAAAAATATCTGATCTGGTGACTCTACCAC-AATATCTGT
* **
167014673 TTCTGGTGGCTCTGCC-ACAATATCTGTATCTGGTGACTCTGTCACAATATCT
1 TTCTGGTGGCTCTGCCAAAAATATCTG-ATCTGGTGACTCTACCACAATATCT
167014725 ATTCTGGCAG
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
54 16 0.34
55 31 0.66
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (54 bp):
TTCTGGTGGCTCTGCCAAAAATATCTGATCTGGTGACTCTACCACAATATCTGT
Found at i:167016768 original size:50 final size:49
Alignment explanation
Indices: 167016647--167016822 Score: 208
Period size: 50 Copynumber: 3.5 Consensus size: 49
167016637 TGAGGTCGCA
* ** ** *
167016647 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAA-TT-GGTCACG
* **
167016698 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATT-GGTCACG
* * *
167016748 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGTCACG
*
167016797 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
167016823 TGCATACCAG
Statistics
Matches: 108, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 30 0.28
50 46 0.43
51 32 0.30
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGTCACG
Found at i:167021338 original size:39 final size:40
Alignment explanation
Indices: 167021291--167021422 Score: 169
Period size: 40 Copynumber: 3.3 Consensus size: 40
167021281 GGACTAAGAT
* * *
167021291 CCGAAGGCATTTGTGTGGGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGTTAATAAACCCGGGTTAAGTC
*
167021330 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTAATAAACCCGGGTTAAGTC
* * * *
167021370 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTTGTGCGAGTTAATA-AACCCGGGTTAAGTC
167021410 CCGAAGGCATTTG
1 CCGAAGGCATTTG
167021423 AGCTAGTCGT
Statistics
Matches: 83, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.41
40 40 0.48
41 9 0.11
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTAATAAACCCGGGTTAAGTC
Found at i:167031176 original size:25 final size:25
Alignment explanation
Indices: 167031137--167031193 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
167031127 GTAAGGAGGG
167031137 GATAA-GGGAGAAGATTTAGGAGCT
1 GATAAGGGGAGAAGATTTAGGAGCT
*
167031161 GATAAGGGGAGAAGATTTAGGAGTT
1 GATAAGGGGAGAAGATTTAGGAGCT
167031186 GATCAAGG
1 GAT-AAGG
167031194 AGCAAGAGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 5 0.17
25 21 0.70
26 4 0.13
ACGTcount: A:0.37, C:0.04, G:0.39, T:0.21
Consensus pattern (25 bp):
GATAAGGGGAGAAGATTTAGGAGCT
Found at i:167032630 original size:27 final size:27
Alignment explanation
Indices: 167032590--167032700 Score: 143
Period size: 27 Copynumber: 4.1 Consensus size: 27
167032580 AGGAAGCGTC
* * *
167032590 CTGGTGGCTATGCCATATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
167032617 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
167032644 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* * *
167032671 CTGGTGACTTTGTCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
167032697 CTGG
1 CTGG
167032701 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 13 0.17
27 62 0.83
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.40
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:167035682 original size:68 final size:64
Alignment explanation
Indices: 167035572--167035824 Score: 219
Period size: 68 Copynumber: 3.9 Consensus size: 64
167035562 ATACTGATGG
** * * * *
167035572 TATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACAAGAC
1 TATGTAGCTAGGTCACATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTAC--GAG
167035635 ATTA
62 A-TA
*
167035639 TGATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 T-ATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * * *
167035704 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCACATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
167035769 TA
63 TA
* * * *
167035771 AACTG--GCTATGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TA-TGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
167035825 CGAACTATAT
Statistics
Matches: 154, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 25 0.16
65 3 0.02
66 22 0.14
67 33 0.21
68 50 0.32
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:167038674 original size:40 final size:40
Alignment explanation
Indices: 167038547--167038676 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
167038537 ATGCTGGAAA
* * *
167038547 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
167038587 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
167038627 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
167038667 TTATATCCGG
1 TTATATCCGG
167038677 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:167046271 original size:40 final size:40
Alignment explanation
Indices: 167046144--167046273 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
167046134 ATGCTGGAAA
* * *
167046144 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
167046184 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
167046224 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
167046264 TTATATCCGG
1 TTATATCCGG
167046274 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:167047742 original size:12 final size:12
Alignment explanation
Indices: 167047727--167047753 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
167047717 GTATCATGAC
167047727 ATGTATATATAT
1 ATGTATATATAT
167047739 ATGTATATATAT
1 ATGTATATATAT
167047751 ATG
1 ATG
167047754 ACTAGTCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (12 bp):
ATGTATATATAT
Found at i:167056048 original size:40 final size:40
Alignment explanation
Indices: 167055963--167056113 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
167055953 AATTGAATGA
* * *
167055963 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
167056003 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
167056044 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
167056083 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
167056114 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:167056127 original size:40 final size:40
Alignment explanation
Indices: 167055999--167056129 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
167055989 TATGCTGGAA
* * *
167055999 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
167056039 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
167056079 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
167056119 ATTATATCCGG
1 ATTATATCCGG
167056130 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:167057575 original size:17 final size:18
Alignment explanation
Indices: 167057553--167057586 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
167057543 TGCCTATTAT
167057553 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
167057570 GGGCCCATCTAGCCCAT
1 GGGCCCATATAGCCCAT
167057587 TCTGGCTCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.41, G:0.24, T:0.15
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:167057738 original size:24 final size:25
Alignment explanation
Indices: 167057710--167057756 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
167057700 CAAACTTTTA
167057710 ACTTTTTGGCATTTCGGC-TTTTCG
1 ACTTTTTGGCATTTCGGCATTTTCG
*
167057734 ACTTTTTGGCATTTTGGCATTTT
1 ACTTTTTGGCATTTCGGCATTTT
167057757 GGCTTTTGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.11, C:0.17, G:0.19, T:0.53
Consensus pattern (25 bp):
ACTTTTTGGCATTTCGGCATTTTCG
Found at i:167062759 original size:39 final size:39
Alignment explanation
Indices: 167062705--167063037 Score: 540
Period size: 39 Copynumber: 8.5 Consensus size: 39
167062695 AAGACACTGA
167062705 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
167062744 AAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
167062783 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
167062822 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
167062861 AAATGTATCTGGACTAAAGTCCCACAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
167062900 AAATATATCCGGGCCAAAGTCCCGCAAGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
167062939 AAATGTATCCGGACTAAAGTCCCACAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
167062978 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
167063017 AAATGTATCCGGGTTAAAGTC
1 AAATGTATCCGGGCTAAAGTC
167063038 TTGCTTGATT
Statistics
Matches: 269, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 269 1.00
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:167068590 original size:22 final size:22
Alignment explanation
Indices: 167068526--167068649 Score: 108
Period size: 22 Copynumber: 5.5 Consensus size: 22
167068516 TCAGCTCGTA
* *
167068526 AGAGCTTACTACTTTCAGCTCATT
1 AGAGCTTACT-GTTT-AGCTCAAT
* *
167068550 GGAGCTTACCGTTTTAGCTC-AT
1 AGAGCTTACTG-TTTAGCTCAAT
*
167068572 ATGATCTTACTGTTTAGCTCAAT
1 A-GAGCTTACTGTTTAGCTCAAT
* *
167068595 AGAGCTTACTGTTCAGCTCGAT
1 AGAGCTTACTGTTTAGCTCAAT
167068617 AGAGCTTACCAT-TTTAGCTCAAT
1 AGAGCTTA-C-TGTTTAGCTCAAT
*
167068640 CGAGCTTACT
1 AGAGCTTACT
167068650 ATTCATCAGC
Statistics
Matches: 82, Mismatches: 13, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
21 1 0.01
22 36 0.44
23 33 0.40
24 12 0.15
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (22 bp):
AGAGCTTACTGTTTAGCTCAAT
Found at i:167068649 original size:45 final size:45
Alignment explanation
Indices: 167068516--167068654 Score: 124
Period size: 45 Copynumber: 3.1 Consensus size: 45
167068506 TACCGATATA
* * * * *
167068516 TCAGCTCG-TAAGAGCTTACTACTTTCAGCTCATTGGAGCTTACCGTT
1 TCAGCTCGAT-AGAGCTTACCA-TTTTAGCTCAATAGAGCTTACTG-T
* *
167068563 TTAGCTC-ATATGATCTTA-C-TGTTTAGCTCAATAGAGCTTACTGT
1 TCAGCTCGATA-GAGCTTACCAT-TTTAGCTCAATAGAGCTTACTGT
* *
167068607 TCAGCTCGATAGAGCTTACCATTTTAGCTCAATCGAGCTTACTAT
1 TCAGCTCGATAGAGCTTACCATTTTAGCTCAATAGAGCTTACTGT
167068652 TCA
1 TCA
167068655 TCAGCTCAGG
Statistics
Matches: 75, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
44 14 0.19
45 46 0.61
46 2 0.03
47 13 0.17
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (45 bp):
TCAGCTCGATAGAGCTTACCATTTTAGCTCAATAGAGCTTACTGT
Found at i:167072657 original size:28 final size:29
Alignment explanation
Indices: 167072590--167072690 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
167072580 ATAGTGAATC
*
167072590 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
167072619 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
167072647 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
167072677 CGCACACTTAGTGC
1 CGCACACTTAGTGC
167072691 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:167080695 original size:28 final size:29
Alignment explanation
Indices: 167080628--167080728 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
167080618 ATAGTGAATC
*
167080628 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
167080657 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
167080685 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
167080715 CGCACACTTAGTGC
1 CGCACACTTAGTGC
167080729 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:167084881 original size:29 final size:29
Alignment explanation
Indices: 167084751--167084873 Score: 237
Period size: 29 Copynumber: 4.2 Consensus size: 29
167084741 GTGACGAGAT
167084751 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
167084780 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
167084809 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
167084838 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
167084867 CGGCACT
1 TGGCACT
167084874 GGGTGTGCGA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 93 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:167084898 original size:58 final size:58
Alignment explanation
Indices: 167084752--167084910 Score: 212
Period size: 58 Copynumber: 2.7 Consensus size: 58
167084742 TGACGAGATT
* * *
167084752 GGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTCGAAAGATATGGCACTAAGTGTGCATGCTGGAAATATAC
* *
167084810 GGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATAC
1 GGCACTAAGTGTGCATGCTCGAAAGATATGGCACTAAGTGTGCATGCTGGAAATATAC
** * * *
167084868 GGCACTGGGTGTGCGA-GCTCGAAGGGTATGGCACTATGTGTGC
1 GGCACTAAGTGTGC-ATGCTCGAAAGATATGGCACTAAGTGTGC
167084911 GGGCTTAAAT
Statistics
Matches: 92, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
58 91 0.99
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (58 bp):
GGCACTAAGTGTGCATGCTCGAAAGATATGGCACTAAGTGTGCATGCTGGAAATATAC
Found at i:167084898 original size:87 final size:87
Alignment explanation
Indices: 167084751--167084910 Score: 232
Period size: 87 Copynumber: 1.8 Consensus size: 87
167084741 GTGACGAGAT
* * *
167084751 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
167084816 AAGTGTGCATGCTGGAAATATA
66 AAGTGTGCATGCTGGAAATATA
** * *
167084838 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAAAGATATGGCAC
*
167084902 TATGTGTGC
65 TAAGTGTGC
167084911 GGGCTTAAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
87 63 0.98
88 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
AAGTGTGCATGCTGGAAATATA
Found at i:167084928 original size:87 final size:87
Alignment explanation
Indices: 167084751--167084939 Score: 229
Period size: 87 Copynumber: 2.2 Consensus size: 87
167084741 GTGACGAGAT
* * *
167084751 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
* *
167084816 AAGTGTGCATGCTGGAAATATA
66 AAGTGTGCAGGCTGGAAATACA
** * *
167084838 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAAAGATATGGCAC
* * * *
167084902 TATGTGTGCGGGCT-TAAATCGCA
65 TAAGTGTGCAGGCTGGAAAT-ACA
167084925 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
167084940 GAAATCGAGT
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
86 4 0.05
87 82 0.94
88 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
AAGTGTGCAGGCTGGAAATACA
Found at i:167094352 original size:40 final size:40
Alignment explanation
Indices: 167094307--167094473 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
167094297 CGGAATATAA
167094307 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
167094347 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
167094387 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
167094427 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
167094466 CCGGATAT
1 CCGGATAT
167094474 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:167094457 original size:80 final size:79
Alignment explanation
Indices: 167094307--167094473 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
167094297 CGGAATATAA
* *
167094307 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
167094372 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
167094387 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
167094449 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
167094466 CCGGATAT
1 CCGGATAT
167094474 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:167095321 original size:17 final size:19
Alignment explanation
Indices: 167095298--167095343 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
167095288 AAGAAGCATG
167095298 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
167095316 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
167095334 AATCATGCTC
1 AATCATGCTC
167095344 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:167102352 original size:40 final size:40
Alignment explanation
Indices: 167102307--167102473 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
167102297 CGGAATATAA
167102307 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
167102347 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
167102387 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
167102427 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
167102466 CCGGATAT
1 CCGGATAT
167102474 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:167102457 original size:80 final size:79
Alignment explanation
Indices: 167102307--167102473 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
167102297 CGGAATATAA
* *
167102307 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
167102372 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
167102387 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
167102449 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
167102466 CCGGATAT
1 CCGGATAT
167102474 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:167103321 original size:17 final size:19
Alignment explanation
Indices: 167103298--167103343 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
167103288 AAGAAGCATG
167103298 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
167103316 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
167103334 AATCATGCTC
1 AATCATGCTC
167103344 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:167111166 original size:52 final size:52
Alignment explanation
Indices: 167111093--167111244 Score: 200
Period size: 52 Copynumber: 3.0 Consensus size: 52
167111083 ATGATAATAC
* * *
167111093 ATATCGATGCCAATGCCATGTCCCAGGCATGGTCTTACATAGGATCACATAA
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACAA
* * * *
167111145 ATATCGATGCCAATGCTATGTCCTAGACATAGTCTTACATGGGA-C-CACAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACAA
* * *
167111195 ATATTGATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACAC
167111245 GTACTAACAT
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
50 41 0.48
51 2 0.02
52 42 0.49
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (52 bp):
ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACAA
Found at i:167111230 original size:50 final size:50
Alignment explanation
Indices: 167111059--167111244 Score: 187
Period size: 50 Copynumber: 3.7 Consensus size: 50
167111049 TCATATCAAC
* * ** *
167111059 GCCATATCCCAAATATGGTCTTACAT--GATAATACATATCGATGCCAAT
1 GCCATATCCCAGACATGGTCTTACATGGGACCACACATATCGATGCCAAT
* * * * *
167111107 GCCATGTCCCAGGCATGGTCTTACATAGGATCACATAAATATCGATGCCAAT
1 GCCATATCCCAGACATGGTCTTACATGGGA-C-CACACATATCGATGCCAAT
* * * * *
167111159 GCTATGTCCTAGACATAGTCTTACATGGGACCACACATATTGATGCCAAT
1 GCCATATCCCAGACATGGTCTTACATGGGACCACACATATCGATGCCAAT
* *
167111209 GCCATATCCCAGATATGGTCTTACATGGGATCACAC
1 GCCATATCCCAGACATGGTCTTACATGGGACCACAC
167111245 GTACTAACAT
Statistics
Matches: 113, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
48 22 0.19
50 48 0.42
51 1 0.01
52 42 0.37
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (50 bp):
GCCATATCCCAGACATGGTCTTACATGGGACCACACATATCGATGCCAAT
Found at i:167114535 original size:71 final size:71
Alignment explanation
Indices: 167114449--167114612 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
167114439 CGATTTGTCT
167114449 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
167114514 CTTTCA
66 CTTTCA
167114520 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
167114585 CTTTCA
66 CTTTCA
167114591 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
167114613 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:167114650 original size:71 final size:70
Alignment explanation
Indices: 167114449--167114646 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
167114439 CGATTTGTCT
* * * *
167114449 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
167114514 CTTTCA
65 CTTTCA
* * * *
167114520 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
167114585 CTTTCA
65 CTTTCA
* *
167114591 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
167114647 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:167120612 original size:40 final size:40
Alignment explanation
Indices: 167120485--167120614 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
167120475 ATGCTGGAAA
* *
167120485 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
167120525 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
167120565 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
167120605 TTATATCCGG
1 TTATATCCGG
167120615 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:167128667 original size:40 final size:40
Alignment explanation
Indices: 167128540--167128669 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
167128530 ATGCTGGAAA
* *
167128540 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
167128580 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
167128620 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
167128660 TTATATCCGG
1 TTATATCCGG
167128670 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:167130880 original size:15 final size:15
Alignment explanation
Indices: 167130851--167130923 Score: 55
Period size: 15 Copynumber: 5.0 Consensus size: 15
167130841 TGTATTTACT
*
167130851 TAATATATAAGTAAAA
1 TAATA-ATAATTAAAA
*
167130867 TAATAATAATTAAAG
1 TAATAATAATTAAAA
* *
167130882 T-ATATTATATTAATA
1 TAATAATA-ATTAAAA
167130897 TAATAAT-A-TAAAA
1 TAATAATAATTAAAA
*
167130910 T-ATAATAAATAAAA
1 TAATAATAATTAAAA
167130924 GACAAGTGTA
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
12 5 0.11
13 6 0.13
14 11 0.24
15 15 0.33
16 9 0.20
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (15 bp):
TAATAATAATTAAAA
Found at i:167130982 original size:19 final size:19
Alignment explanation
Indices: 167130947--167130985 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
167130937 TGATGTATGG
*
167130947 ATACATATGTTCTAATAAT
1 ATACATATGTTCAAATAAT
167130966 ATACATATGTAT-AAATAAT
1 ATACATATGT-TCAAATAAT
167130985 A
1 A
167130986 AATAAGTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.49, C:0.08, G:0.05, T:0.38
Consensus pattern (19 bp):
ATACATATGTTCAAATAAT
Found at i:167131071 original size:20 final size:19
Alignment explanation
Indices: 167131038--167131075 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
167131028 ATAAAGAACA
167131038 AAAGAAATAAGAAATGAAAT
1 AAAGAAATAAGAAA-GAAAT
167131058 AAAGAAA-AAGGAAAGAAA
1 AAAGAAATAA-GAAAGAAA
167131076 GAAGGCCACG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (19 bp):
AAAGAAATAAGAAAGAAAT
Found at i:167131076 original size:15 final size:16
Alignment explanation
Indices: 167131038--167131079 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
167131028 ATAAAGAACA
* *
167131038 AAAGAAATAAGAAATG
1 AAAGAAAGAAGAAAGG
*
167131054 AAATAAAGAA-AAAGG
1 AAAGAAAGAAGAAAGG
167131069 AAAGAAAGAAG
1 AAAGAAAGAAG
167131080 GCCACGGTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.07
Consensus pattern (16 bp):
AAAGAAAGAAGAAAGG
Found at i:167131678 original size:39 final size:39
Alignment explanation
Indices: 167131624--167131701 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
167131614 GACAATGGGA
167131624 GTTAGCTCGAGAAAATAAGGTTTGTATTTCTATAAACTG
1 GTTAGCTCGAGAAAATAAGGTTTGTATTTCTATAAACTG
167131663 GTTAGCTCGAGAAAATAAGGTTTGTATTTCTATAAACTG
1 GTTAGCTCGAGAAAATAAGGTTTGTATTTCTATAAACTG
167131702 AACTTAATAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (39 bp):
GTTAGCTCGAGAAAATAAGGTTTGTATTTCTATAAACTG
Found at i:167132386 original size:18 final size:18
Alignment explanation
Indices: 167132365--167132417 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
167132355 GATTGCTATG
*
167132365 GAATAATTGACTGTTATT
1 GAATAAATGACTGTTATT
*
167132383 GAATAAATGACTGTTACT
1 GAATAAATGACTGTTATT
* *
167132401 GCATAACTGACTGTTAT
1 GAATAAATGACTGTTAT
167132418 AGAGTGTCGG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (18 bp):
GAATAAATGACTGTTATT
Found at i:167133727 original size:14 final size:15
Alignment explanation
Indices: 167133703--167133739 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
167133693 CTGGGAGTTA
167133703 GTTTCTTTGTGCAAG
1 GTTTCTTTGTGCAAG
167133718 GTTT-TTTGTGCAAG
1 GTTTCTTTGTGCAAG
*
167133732 ATTTCTTT
1 GTTTCTTT
167133740 CTTTTGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.14, C:0.11, G:0.22, T:0.54
Consensus pattern (15 bp):
GTTTCTTTGTGCAAG
Found at i:167134410 original size:24 final size:24
Alignment explanation
Indices: 167134383--167134431 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
167134373 ACTGTCACTG
*
167134383 TCATCATAGTTTGCACTATTACTA
1 TCATCATAGCTTGCACTATTACTA
167134407 TCATCATAGCTTGCACTATTACTA
1 TCATCATAGCTTGCACTATTACTA
167134431 T
1 T
167134432 ATAGACACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (24 bp):
TCATCATAGCTTGCACTATTACTA
Found at i:167137993 original size:27 final size:27
Alignment explanation
Indices: 167137914--167138017 Score: 93
Period size: 27 Copynumber: 3.9 Consensus size: 27
167137904 ATGAAGGGGC
* * * *
167137914 ATTTCAGTCATTTTACCCTACATGGGT
1 ATTTCGGTAATTTTACACTACAAGGGT
* * * *
167137941 ATTTCGCTAATTTCACA-AATCGAGGGT
1 ATTTCGGTAATTTTACACTA-CAAGGGT
*
167137968 ATTTTGGTAATTTTACACTACAAGGGT
1 ATTTCGGTAATTTTACACTACAAGGGT
* *
167137995 ATTTCAGTAATTTTGCACTACAA
1 ATTTCGGTAATTTTACACTACAA
167138018 AGGTCCTAAT
Statistics
Matches: 59, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
26 1 0.02
27 57 0.97
28 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (27 bp):
ATTTCGGTAATTTTACACTACAAGGGT
Found at i:167140202 original size:43 final size:43
Alignment explanation
Indices: 167140154--167140319 Score: 167
Period size: 43 Copynumber: 3.9 Consensus size: 43
167140144 GTTATCGAGA
* * *
167140154 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
* * * * *
167140197 TGTGATTATACGTAAGAGCATGTCTAGGACATTGGCATCGTAT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
* * * *
167140240 TATGATT-CTGTGTAAGACCCTATCTGGGACAGTGGCATCG-AT
1 TGTGATTAC-ATGTAAGACCATATCTGGGACATTGGCATCGTAT
* *
167140282 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 -TGTGATTACATGTAAGACCATATCTGGGACATTGGCAT
167140320 TGTGCGAGCT
Statistics
Matches: 100, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
42 8 0.08
43 91 0.91
44 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
Found at i:167142640 original size:46 final size:46
Alignment explanation
Indices: 167142590--167142765 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
167142580 TGGTTGAGCA
167142590 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
167142636 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
167142681 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
167142729 CCCGAGCTCCTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
167142766 GCAGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:167142746 original size:93 final size:93
Alignment explanation
Indices: 167142587--167142758 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
167142577 GGATGGTTGA
* * *
167142587 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCCTTGAGT
167142652 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
167142680 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCCTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCCTTGAGT
167142745 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
167142759 CTTATGGGCA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCCTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:167147775 original size:41 final size:41
Alignment explanation
Indices: 167147720--167147838 Score: 175
Period size: 41 Copynumber: 2.9 Consensus size: 41
167147710 GTTTGATTGA
* *
167147720 AAACGCCACAAAAAACTGAGCAATAGCGGCGTTTTTGGTCC
1 AAACGCCGCGAAAAACTGAGCAATAGCGGCGTTTTTGGTCC
* * * *
167147761 AAACGTCGCTAAAAACTAAGCAATAGTGGCGTTTTTGGTCC
1 AAACGCCGCGAAAAACTGAGCAATAGCGGCGTTTTTGGTCC
*
167147802 AAACGCCGCGAAAAACTGAGCAATAGCGGCGCTTTTG
1 AAACGCCGCGAAAAACTGAGCAATAGCGGCGTTTTTG
167147839 ACAAAACGCC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 68 1.00
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.21
Consensus pattern (41 bp):
AAACGCCGCGAAAAACTGAGCAATAGCGGCGTTTTTGGTCC
Found at i:167147874 original size:41 final size:41
Alignment explanation
Indices: 167147825--167148138 Score: 373
Period size: 41 Copynumber: 7.7 Consensus size: 41
167147815 AACTGAGCAA
** *
167147825 TAGCGGCGCTTTT-GACAAAACGCCGTTATAGATCAAGGTTT
1 TAGCGGCGCTTTTGGA-AAAACGCCACTATAGATCGAGGTTT
* * *
167147866 TAGTGGCGCTTTTGGAAAAACGCCGCTATAGATGGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
* ** * * *
167147907 TAGTGGCGCTTTTGGAAAAACGCTTCTATTGCTC-AGTTTT
1 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
* * *
167147947 TAGCGGCGCATTTGGAAAAACCCCACTATAGGTCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
* **
167147988 TAGCGGCGCTTTTGGGAAAACGCCACTATAGATATAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
*
167148029 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGATTT
1 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
* * *
167148070 TAGCGGCGCTTTTGGAAAAACGCCACTATTGCTC-AGTTTT
1 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
* * *
167148110 TAGCGGCGCTTCTAGAAAAACGCCGCTAT
1 TAGCGGCGCTTTTGGAAAAACGCCACTAT
167148139 TGCTCAGTTT
Statistics
Matches: 237, Mismatches: 34, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
40 63 0.27
41 172 0.73
42 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
Found at i:167147951 original size:122 final size:121
Alignment explanation
Indices: 167147825--167148138 Score: 387
Period size: 122 Copynumber: 2.6 Consensus size: 121
167147815 AACTGAGCAA
** *
167147825 TAGCGGCGCTTTTGACAAAACGCCGTTATAGATCAAGGTTTTAGTGGCGCTTTTGGAAAAACGCC
1 TAGCGGCGCTTTTGA-AAAACGCCACTATAGATC-AGGTTTTAGCGGCGCTTTTGGAAAAACGCC
* * ** * * *
167147890 GCTATAGATGGAGGTTTTAGTGGCGCTTTTGGAAAAACGCTTCTATTGCTC-AGTTTT
64 GCTATAGATAGAGGTTTTAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGATTT
* * * *
167147947 TAGCGGCGCATTTGGAAAAACCCCACTATAGGTCGAGGTTTTAGCGGCGCTTTTGGGAAAACGCC
1 TAGCGGCGC-TTTTGAAAAACGCCACTATAGATC-AGGTTTTAGCGGCGCTTTTGGAAAAACGCC
* *
167148012 ACTATAGATATAGGTTTTAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGATTT
64 GCTATAGATAGAGGTTTTAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGATTT
* * * * *
167148070 TAGCGGCGCTTTTGGAAAAACGCCACTATTGCTCAGTTTTTAGCGGCGCTTCTAGAAAAACGCCG
1 TAGCGGCGCTTTT-GAAAAACGCCACTATAGATCAGGTTTTAGCGGCGCTTTTGGAAAAACGCCG
167148135 CTAT
65 CTAT
167148139 TGCTCAGTTT
Statistics
Matches: 163, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
122 127 0.78
123 36 0.22
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (121 bp):
TAGCGGCGCTTTTGAAAAACGCCACTATAGATCAGGTTTTAGCGGCGCTTTTGGAAAAACGCCGC
TATAGATAGAGGTTTTAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGATTT
Found at i:167147961 original size:81 final size:81
Alignment explanation
Indices: 167147825--167148138 Score: 387
Period size: 81 Copynumber: 3.9 Consensus size: 81
167147815 AACTGAGCAA
** * * * *
167147825 TAGCGGCGCTTTT-GACAAAACGCCGTTATAGATCAAGGTTTTAGTGGCGCTTTTGGAAAAACGC
1 TAGCGGCGCTTTTGGA-AAAACGCCACTATTGCTC-AGTTTTTAGCGGCGCTTTTGGAAAAACGC
* *
167147889 CGCTATAGATGGAGGTTT
64 CACTATAGATCGAGGTTT
* ** * *
167147907 TAGTGGCGCTTTTGGAAAAACGCTTCTATTGCTCAGTTTTTAGCGGCGCATTTGGAAAAACCCCA
1 TAGCGGCGCTTTTGGAAAAACGCCACTATTGCTCAGTTTTTAGCGGCGCTTTTGGAAAAACGCCA
*
167147972 CTATAGGTCGAGGTTT
66 CTATAGATCGAGGTTT
* * * * *
167147988 TAGCGGCGCTTTTGGGAAAACGCCACTATAGATATAGGTTTTAGCGGCGCTTTTGGAAAAACGCC
1 TAGCGGCGCTTTTGGAAAAACGCCACTATTGCT-CAGTTTTTAGCGGCGCTTTTGGAAAAACGCC
*
167148053 ACTATAGATCGAGATTT
65 ACTATAGATCGAGGTTT
* * *
167148070 TAGCGGCGCTTTTGGAAAAACGCCACTATTGCTCAGTTTTTAGCGGCGCTTCTAGAAAAACGCCG
1 TAGCGGCGCTTTTGGAAAAACGCCACTATTGCTCAGTTTTTAGCGGCGCTTTTGGAAAAACGCCA
167148135 CTAT
66 CTAT
167148139 TGCTCAGTTT
Statistics
Matches: 197, Mismatches: 33, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
81 98 0.50
82 97 0.49
83 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (81 bp):
TAGCGGCGCTTTTGGAAAAACGCCACTATTGCTCAGTTTTTAGCGGCGCTTTTGGAAAAACGCCA
CTATAGATCGAGGTTT
Found at i:167148029 original size:163 final size:163
Alignment explanation
Indices: 167147825--167148118 Score: 473
Period size: 163 Copynumber: 1.8 Consensus size: 163
167147815 AACTGAGCAA
** *
167147825 TAGCGGCGCTTTTGACAAAACGCCGTTATAGATCAAGGTTTTAGTGGCGCTTTTGGAAAAACGCC
1 TAGCGGCGCTTTTGACAAAACGCCACTATAGATCAAGGTTTTAGCGGCGCTTTTGGAAAAACGCC
* * * * **
167147890 GCTATAGATGGAGGTTTTAGTGGCGCTTTTGGAAAAACGCTTCTATTGCTCAGTTTTTAGCGGCG
66 ACTATAGATCGAGATTTTAGCGGCGCTTTTGGAAAAACGCCACTATTGCTCAGTTTTTAGCGGCG
167147955 CATTTGGAAAAACCCCACTATAGGTCGAGGTTT
131 CATTTGGAAAAACCCCACTATAGGTCGAGGTTT
**
167147988 TAGCGGCGCTTTTGGGAAAACGCCACTATAGAT-ATAGGTTTTAGCGGCGCTTTTGGAAAAACGC
1 TAGCGGCGCTTTTGACAAAACGCCACTATAGATCA-AGGTTTTAGCGGCGCTTTTGGAAAAACGC
167148052 CACTATAGATCGAGATTTTAGCGGCGCTTTTGGAAAAACGCCACTATTGCTCAGTTTTTAGCGGC
65 CACTATAGATCGAGATTTTAGCGGCGCTTTTGGAAAAACGCCACTATTGCTCAGTTTTTAGCGGC
167148117 GC
130 GC
167148119 TTCTAGAAAA
Statistics
Matches: 119, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
162 1 0.01
163 118 0.99
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (163 bp):
TAGCGGCGCTTTTGACAAAACGCCACTATAGATCAAGGTTTTAGCGGCGCTTTTGGAAAAACGCC
ACTATAGATCGAGATTTTAGCGGCGCTTTTGGAAAAACGCCACTATTGCTCAGTTTTTAGCGGCG
CATTTGGAAAAACCCCACTATAGGTCGAGGTTT
Found at i:167148599 original size:7 final size:7
Alignment explanation
Indices: 167148584--167148613 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
167148574 ATGGCTTTTT
*
167148584 CTAAACC
1 CTAACCC
167148591 CTAACCC
1 CTAACCC
167148598 CTAACCC
1 CTAACCC
167148605 CTAACCC
1 CTAACCC
167148612 CT
1 CT
167148614 TAAATCAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.30, C:0.53, G:0.00, T:0.17
Consensus pattern (7 bp):
CTAACCC
Found at i:167148848 original size:28 final size:29
Alignment explanation
Indices: 167148789--167148848 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 29
167148779 ACTAACCTCT
* * * **
167148789 AAACCCATAAACTATAGATCGTAAATCCC
1 AAACCCATAAACTATAAACCATAAATAAC
167148818 AAACCC-TAAACTATAAACCATAAATAAC
1 AAACCCATAAACTATAAACCATAAATAAC
167148846 AAA
1 AAA
167148849 GTCTTAAACC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 20 0.77
29 6 0.23
ACGTcount: A:0.53, C:0.25, G:0.03, T:0.18
Consensus pattern (29 bp):
AAACCCATAAACTATAAACCATAAATAAC
Found at i:167148950 original size:14 final size:14
Alignment explanation
Indices: 167148930--167148964 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
167148920 TCATGGTCTA
*
167148930 GGATTTAGGGTTTG
1 GGATTTAGGATTTG
*
167148944 TGATTTAGGATTTG
1 GGATTTAGGATTTG
167148958 GGATTTA
1 GGATTTA
167148965 ATTTTTAGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (14 bp):
GGATTTAGGATTTG
Found at i:167149362 original size:7 final size:7
Alignment explanation
Indices: 167149350--167149405 Score: 58
Period size: 7 Copynumber: 7.6 Consensus size: 7
167149340 AAATCTTCAA
167149350 AAAAATT
1 AAAAATT
167149357 AAAAATTT
1 AAAAA-TT
*
167149365 AAAAGTT
1 AAAAATT
*
167149372 AAAAACT
1 AAAAATT
*
167149379 AAAACTT
1 AAAAATT
167149386 AAAAACTT
1 AAAAA-TT
167149394 AAAAACTT
1 AAAAA-TT
167149402 AAAA
1 AAAA
167149406 TTTTAATATT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
7 21 0.51
8 20 0.49
ACGTcount: A:0.66, C:0.07, G:0.02, T:0.25
Consensus pattern (7 bp):
AAAAATT
Found at i:167149375 original size:22 final size:22
Alignment explanation
Indices: 167149350--167149411 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
167149340 AAATCTTCAA
*
167149350 AAAAATTAAAAATTTAAAAGTT
1 AAAAATTAAAAATTTAAAACTT
* * *
167149372 AAAAACTAAAACTTAAAAACTT
1 AAAAATTAAAAATTTAAAACTT
*
167149394 AAAAACTTAAAATTTTAA
1 AAAAA-TTAAAAATTTAA
167149412 TATTTAATAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 23 0.72
23 9 0.28
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.29
Consensus pattern (22 bp):
AAAAATTAAAAATTTAAAACTT
Found at i:167149411 original size:16 final size:16
Alignment explanation
Indices: 167149349--167149405 Score: 66
Period size: 15 Copynumber: 3.8 Consensus size: 16
167149339 AAAATCTTCA
*
167149349 AAAAAATTAAAAA-TT
1 AAAAACTTAAAAACTT
* *
167149364 TAAAAGTTAAAAAC-T
1 AAAAACTTAAAAACTT
167149379 -AAAACTTAAAAACTT
1 AAAAACTTAAAAACTT
167149394 AAAAACTTAAAA
1 AAAAACTTAAAA
167149406 TTTTAATATT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
14 12 0.33
15 13 0.36
16 11 0.31
ACGTcount: A:0.67, C:0.07, G:0.02, T:0.25
Consensus pattern (16 bp):
AAAAACTTAAAAACTT
Found at i:167149479 original size:23 final size:24
Alignment explanation
Indices: 167149439--167149484 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
167149429 CATATTTCAG
* * *
167149439 TTAAAAAGATCAATATTC-AAAAT
1 TTAAAAAAATAAAAATTCTAAAAT
167149462 TTAAAAAAATAAAAATTCTAAAA
1 TTAAAAAAATAAAAATTCTAAAA
167149485 AATAATAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.28
Consensus pattern (24 bp):
TTAAAAAAATAAAAATTCTAAAAT
Found at i:167154657 original size:40 final size:40
Alignment explanation
Indices: 167154592--167154838 Score: 358
Period size: 40 Copynumber: 6.2 Consensus size: 40
167154582 TCTTCGGAAT
* ** *
167154592 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
167154631 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
167154671 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
167154711 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
167154751 TTAGCCC-GATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* *
167154790 TTAGCCCGGATATAATC-ACTAC-CATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACT-CGCACAAATGCCTTCGGGTC
167154830 TTAGCCCGG
1 TTAGCCCGG
167154839 GTATCATTCA
Statistics
Matches: 190, Mismatches: 14, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 41 0.22
40 147 0.77
41 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:167154794 original size:79 final size:79
Alignment explanation
Indices: 167154592--167154837 Score: 352
Period size: 79 Copynumber: 3.1 Consensus size: 79
167154582 TCTTCGGAAT
* * ** * * * *
167154592 TTAGCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACA
1 TTAGCCCGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACA
167154657 AATGCCTTCGGGTC
66 AATGCCTTCGGGTC
167154671 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAGCCC-GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
*
167154736 GAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
167154751 TTAGCCCGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAC-CA
1 TTAGCCCGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACT-CGCA
* *
167154814 TAAATGCCTTCGGGAC
64 CAAATGCCTTCGGGTC
167154830 TTAGCCCG
1 TTAGCCCG
167154838 GGTATCATTC
Statistics
Matches: 152, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
79 79 0.52
80 73 0.48
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (79 bp):
TTAGCCCGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACA
AATGCCTTCGGGTC
Found at i:167154794 original size:119 final size:120
Alignment explanation
Indices: 167154583--167154838 Score: 360
Period size: 119 Copynumber: 2.1 Consensus size: 120
167154573 AACCAAGTTT
* * * * *
167154583 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAC
167154647 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACT-CGCACAAATGC
66 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAC-CACAAATGC
* ** *
167154702 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCC-GATATAA
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAA
*
167154765 CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTACCATAAATGC
65 CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTACCACAAATGC
167154821 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
167154839 GTATCATTCA
Statistics
Matches: 122, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
119 83 0.68
120 37 0.30
121 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (120 bp):
CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAC
AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTACCACAAATGC
Found at i:167157616 original size:40 final size:39
Alignment explanation
Indices: 167157571--167157718 Score: 129
Period size: 40 Copynumber: 3.7 Consensus size: 39
167157561 ATAACCACAA
* *** *
167157571 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAA-TGCCTTCGGGTCTTAACCCGGATATAACAACTC
*
167157611 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCAC-AATGCCTTCGGGTCTTAACCCGGATATAACAACTC
* *
167157651 GCACGAATGCCTTCGGGTCTTAGCTCGGATATAATC-ACTAGC
1 GCAC-AATGCCTTCGGGTCTTAACCCGGATATAA-CAACT--C
* * *
167157693 GTA-AATGCCTTCGGGACTTAGCCCGG
1 GCACAATGCCTTCGGGTCTTAACCCGG
167157719 GTATCATTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
40 87 0.94
41 3 0.03
42 3 0.03
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAACCCGGATATAACAACTC
Found at i:167161263 original size:43 final size:43
Alignment explanation
Indices: 167161188--167161351 Score: 149
Period size: 43 Copynumber: 3.8 Consensus size: 43
167161178 TTTTATAATT
* * *
167161188 TTTAGCGGCGTTTT-TGAAAAAAGCGTTGCTAAAGGA-AATGGTC
1 TTTAGCGGCGTTTTCGGGAAAAA-CGTCGCTAAA-GACAATGGTC
* * * *
167161231 TTTAGTGGCGTTTTCGGGAAAAACGCCACTAAAGACAAT-GAC
1 TTTAGCGGCGTTTTCGGGAAAAACGTCGCTAAAGACAATGGTC
* * **
167161273 TTTTAGCGGTGTTTAC--GAAAAAGCGTCGCTAAAGATTATGGTC
1 -TTTAGCGGCGTTTTCGGGAAAAA-CGTCGCTAAAGACAATGGTC
*
167161316 TTTAGCAGCGTTTTCGGGAAAAACGTCGCTAAAGAC
1 TTTAGCGGCGTTTTCGGGAAAAACGTCGCTAAAGAC
167161352 CATGACTTTT
Statistics
Matches: 95, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
41 6 0.06
42 28 0.29
43 49 0.52
44 12 0.13
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTTCGGGAAAAACGTCGCTAAAGACAATGGTC
Found at i:167161331 original size:85 final size:86
Alignment explanation
Indices: 167161187--167161363 Score: 241
Period size: 85 Copynumber: 2.1 Consensus size: 86
167161177 ATTTTATAAT
** * **
167161187 TTTTAGCGGCGTTTTTGAAAAAAGCGTTGCTAAAGGAAATGGTCTTTAGTGGCGTTTTCGGGAAA
1 TTTTAGCGGCGTTTACGAAAAAAGCGTCGCTAAAGGAAATGGTCTTTAGCAGCGTTTTCGGGAAA
167161252 AACGCCACTAAAGACAATGAC
66 AACGCCACTAAAGACAATGAC
* *
167161273 TTTTAGCGGTGTTTACG-AAAAAGCGTCGCTAAA-GATTATGGTCTTTAGCAGCGTTTTCGGGAA
1 TTTTAGCGGCGTTTACGAAAAAAGCGTCGCTAAAGGA-AATGGTCTTTAGCAGCGTTTTCGGGAA
* * *
167161336 AAACGTCGCTAAAGACCATGAC
65 AAACGCCACTAAAGACAATGAC
167161358 TTTTAG
1 TTTTAG
167161364 TGGCACTTTT
Statistics
Matches: 80, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
84 2 0.03
85 64 0.80
86 14 0.17
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (86 bp):
TTTTAGCGGCGTTTACGAAAAAAGCGTCGCTAAAGGAAATGGTCTTTAGCAGCGTTTTCGGGAAA
AACGCCACTAAAGACAATGAC
Found at i:167161388 original size:85 final size:84
Alignment explanation
Indices: 167161225--167161499 Score: 272
Period size: 85 Copynumber: 3.2 Consensus size: 84
167161215 GCTAAAGGAA
* * * *
167161225 ATGGTCTTTAGTGGCGTTTTCGGGAAAAACGCCACTAAAGACAATGACTTTTAGCGG---TGTTT
1 ATGGTCTTTAGCGGCGTTTTCGGGAAAAACGTCGCTAAAGACCATGACTTTTAGCGGCACT-TTT
* *
167161287 ACGAAAAAGCGTCGCTAAAGATT
65 ACG-CAAA-CGCCGCTAAA-ATT
* * *
167161310 ATGGTCTTTAGCAGCGTTTTCGGGAAAAACGTCGCTAAAGACCATGACTTTTAGTGGCACTTTTT
1 ATGGTCTTTAGCGGCGTTTTCGGGAAAAACGTCGCTAAAGACCATGACTTTTAGCGGCACTTTTA
*
167161375 CGCAAACGCCGCTAAAAGTC
66 CGCAAACGCCGCTAAAA-TT
* ** * ** *
167161395 ATGGTCTTTAGCGACG-TTT-GCAAAAAAGAGTCGCTAAAGGTCACGACTTTTAGCGGCACTTTT
1 ATGGTCTTTAGCGGCGTTTTCGGGAAAAA-CGTCGCTAAAGACCATGACTTTTAGCGGCACTTTT
*
167161458 AACGCAAATGCCGCTAAAATT
65 -ACGCAAACGCCGCTAAAATT
*
167161479 CAGGGTCTTTAGCGGCGTTTT
1 -ATGGTCTTTAGCGGCGTTTT
167161500 TTTAAATAAA
Statistics
Matches: 158, Mismatches: 24, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
83 6 0.04
84 35 0.22
85 105 0.66
86 6 0.04
87 5 0.03
88 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (84 bp):
ATGGTCTTTAGCGGCGTTTTCGGGAAAAACGTCGCTAAAGACCATGACTTTTAGCGGCACTTTTA
CGCAAACGCCGCTAAAATT
Found at i:167164527 original size:2 final size:2
Alignment explanation
Indices: 167164520--167164546 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
167164510 TCATGACATG
167164520 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
167164547 GACTAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:167169188 original size:94 final size:94
Alignment explanation
Indices: 167169027--167169496 Score: 904
Period size: 94 Copynumber: 5.0 Consensus size: 94
167169017 AATGTGACCG
* *
167169027 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
167169092 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
167169121 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
167169186 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
167169215 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
167169280 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
167169309 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
167169374 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
167169403 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTACG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
167169468 GAATTAAATGTCACTATGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
167169497 GAATGTCAAT
Statistics
Matches: 372, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 372 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:167169501 original size:24 final size:24
Alignment explanation
Indices: 167169455--167169504 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
167169445 TTAACATTGG
*
167169455 CACTATGTGTACGGAATTAAATGT
1 CACTATGTGTACAGAATTAAATGT
* * *
167169479 CACTATGTGTGCAGATTTGAATGT
1 CACTATGTGTACAGAATTAAATGT
167169503 CA
1 CA
167169505 ATGCATGAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (24 bp):
CACTATGTGTACAGAATTAAATGT
Found at i:167169557 original size:24 final size:24
Alignment explanation
Indices: 167169525--167169586 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
167169515 GAAAATTTCA
*
167169525 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGAGTTTAAT-T
167169549 GGCACTATGTGTGCGAGTTTAATT
1 GGCACTATGTGTGCGAGTTTAATT
*
167169573 AGCACTATGTGTGC
1 GGCACTATGTGTGC
167169587 AAATTTGGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 29 0.83
25 6 0.17
ACGTcount: A:0.19, C:0.15, G:0.31, T:0.35
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGTTTAATT
Found at i:167171679 original size:40 final size:40
Alignment explanation
Indices: 167171634--167171719 Score: 138
Period size: 40 Copynumber: 2.1 Consensus size: 40
167171624 CGGAATACAA
*
167171634 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACCAC-TCGCACGAATGCCTTCGGGTCTTAGC
*
167171674 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACCACTCGCACGAATGCCTTCGGGTCTTAGC
167171714 CCGGAT
1 CCGGAT
167171720 GTAGCGCTTA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
39 1 0.02
40 42 0.98
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (40 bp):
CCGGATAGAACCACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:167180711 original size:40 final size:40
Alignment explanation
Indices: 167180628--167180779 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
167180618 TCGAATGATG
* *
167180628 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
167180668 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
167180708 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* *
167180749 -CCGGGCTATGTCCCGAAGGC-TTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
167180780 CGCTATATCC
Statistics
Matches: 94, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
38 1 0.01
39 10 0.11
40 72 0.77
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:167188704 original size:40 final size:40
Alignment explanation
Indices: 167188628--167188732 Score: 124
Period size: 40 Copynumber: 2.6 Consensus size: 40
167188618 ATGTCCGGGC
* *
167188628 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGAT
1 TAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAATCCGGAT
** *
167188668 TAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAATCCGGGT
1 TAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAATCCGGAT
*
167188708 TAAGTCCCGAAAGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCGAG
167188733 CTATTATAAC
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
39 1 0.02
40 47 0.84
41 8 0.14
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACCAAATCCGGAT
Found at i:167192378 original size:35 final size:35
Alignment explanation
Indices: 167192251--167192381 Score: 138
Period size: 35 Copynumber: 3.6 Consensus size: 35
167192241 CCTCATTGAA
* * *
167192251 ATACCATACCTACATTTTACAACTCGGTATGGGA-A
1 ATACCATACCTACATTTCACAACTCAGTAT-GGATG
* **
167192286 ATGCCATACCTACATTTCTTAACTCAGTATGGATTTGG
1 ATACCATACCTACATTTCACAACTCAGTATGGA--T-G
*
167192324 TAATACCATACCTACATTTCACAACTCAGCATGGATG
1 --ATACCATACCTACATTTCACAACTCAGTATGGATG
167192361 ATACCATACCTACATTTCACA
1 ATACCATACCTACATTTCACA
167192382 CTTTTCCATG
Statistics
Matches: 80, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
34 3 0.04
35 46 0.57
37 1 0.01
38 1 0.01
40 29 0.36
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
ATACCATACCTACATTTCACAACTCAGTATGGATG
Found at i:167198853 original size:40 final size:40
Alignment explanation
Indices: 167198812--167199032 Score: 214
Period size: 40 Copynumber: 5.5 Consensus size: 40
167198802 GCTCGATTGT
* * * * *
167198812 CTTCGGGACATAGCTCGG-TTATAGTAATTCGCACAAATGT
1 CTTCGGGACATAACCCGGATT-TGGTAACTCGCACAAATGC
*
167198852 CTTCGGGACTTAACCCGGATTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAACCCGGATTTGGTAACTCGCACAAATGC
167198892 CTTCGGGA-ATTAACCCGGATTTGGTAACTCGCACAAATGC
1 CTTCGGGACA-TAACCCGGATTTGGTAACTCGCACAAATGC
* * * *
167198932 CTTCGGGA-ATTAACCCAGATTTAGTAACTCGCATAATTGC
1 CTTCGGGACA-TAACCCGGATTTGGTAACTCGCACAAATGC
* * * * * * *
167198972 CTTTGGGACTTAACCCAGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAACCCGGATTTGGTAAC-TCGCACAAATGC
* *
167199013 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACATAACCCGGAT
167199033 ACCATTCGAA
Statistics
Matches: 156, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
40 129 0.83
41 27 0.17
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (40 bp):
CTTCGGGACATAACCCGGATTTGGTAACTCGCACAAATGC
Found at i:167198924 original size:80 final size:80
Alignment explanation
Indices: 167198833--167199032 Score: 256
Period size: 80 Copynumber: 2.5 Consensus size: 80
167198823 AGCTCGGTTA
* * *
167198833 TAGTAATTCGCACAAATGTCTTCGGGACTTAACCCGGATTTGGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
*
167198898 GAATTAACCCGGATT
66 GAATTAACCCAGATT
* * * * * *
167198913 TGGTAACTCGCACAAATGCCTTCGGGAATTAACCCAGATTTAGTAACTCGCATAATTGCCTTTGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
*
167198978 GACTTAACCCAGATT
66 GAATTAACCCAGATT
* * * *
167198993 TAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 TAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGAT
167199033 ACCATTCGAA
Statistics
Matches: 101, Mismatches: 18, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
80 74 0.73
81 27 0.27
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.27
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
GAATTAACCCAGATT
Found at i:167208041 original size:40 final size:40
Alignment explanation
Indices: 167207980--167208117 Score: 179
Period size: 40 Copynumber: 3.5 Consensus size: 40
167207970 GGAATGATAC
* * * *
167207980 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* *
167208020 CCGGGTTAAGACTCGATGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
167208060 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
167208100 CCGGGTTAAGACCCGAAG
1 CCGGGTTAAGACCCGAAG
167208118 CCAATTGTTC
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
40 83 0.98
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:167208137 original size:80 final size:80
Alignment explanation
Indices: 167207980--167208140 Score: 191
Period size: 80 Copynumber: 2.0 Consensus size: 80
167207970 GGAATGATAC
* * * * * * * *
167207980 CCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATATCCGGGTTAAGACTCGATGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGTTAAGACCCGAAGCCAATTG
*
167208045 TGCGAGTTGTTATAT
66 TGCGAGTGGTTATAT
*
167208060 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGCCAATT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGTTAAGACCCGAAGCCAATT
*
167208124 GTTC-ATGTGGTTATAT
65 GTGCGA-GTGGTTATAT
167208140 C
1 C
167208141 AGGCTAAATT
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
79 1 0.01
80 65 0.96
81 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGTTAAGACCCGAAGCCAATTG
TGCGAGTGGTTATAT
Found at i:167210162 original size:40 final size:40
Alignment explanation
Indices: 167210121--167210341 Score: 266
Period size: 40 Copynumber: 5.5 Consensus size: 40
167210111 GCTCGATTGT
* * *
167210121 CTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGT
1 CTTCGGGACATAACCCGGATT-TAGTAACTCGCACAAATGC
* *
167210161 CTTCGGGACTTAACCCGGATTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAACCCGGATTTAGTAACTCGCACAAATGC
*
167210201 CTTCGGGA-ATTAACCCGGATTTGGTAACTCGCACAAATGC
1 CTTCGGGACA-TAACCCGGATTTAGTAACTCGCACAAATGC
*
167210241 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACATAACCCGGATTTAGTAACTCGCACAAATGC
* * * * * *
167210281 CTTCGGGACTTAACTCGAATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAACCCGGATTTAGTAAC-TCGCACAAATGC
* *
167210322 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACATAACCCGGAT
167210342 ACATTCGAAT
Statistics
Matches: 161, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
40 132 0.82
41 29 0.18
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CTTCGGGACATAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:167213163 original size:40 final size:40
Alignment explanation
Indices: 167213118--167213247 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
167213108 CGGAATACAA
167213118 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
167213158 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
167213198 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
167213238 CCGGATATAA
1 CCGGATATAA
167213248 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:167213262 original size:40 final size:40
Alignment explanation
Indices: 167213118--167213285 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
167213108 CGGAATACAA
* **
167213118 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
167213158 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
167213198 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
167213238 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
167213278 CCGGATAT
1 CCGGATAT
167213286 CATTCAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 2 0.02
40 102 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:167221215 original size:40 final size:40
Alignment explanation
Indices: 167221170--167221299 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
167221160 CGGAATACAA
167221170 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
167221210 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
167221250 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
167221290 CCGGATATAA
1 CCGGATATAA
167221300 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:167221314 original size:40 final size:40
Alignment explanation
Indices: 167221170--167221337 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
167221160 CGGAATACAA
* **
167221170 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
167221210 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
167221250 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
167221290 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
167221330 CCGGATAT
1 CCGGATAT
167221338 CATTCAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 2 0.02
40 102 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:167229322 original size:39 final size:38
Alignment explanation
Indices: 167229275--167229412 Score: 150
Period size: 39 Copynumber: 3.5 Consensus size: 38
167229265 GGACTAGGAT
*
167229275 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGCTAAGC
* * * *
167229314 CCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGT
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGCTAAGC
* **
167229353 CCGAAGGCATTCGTGCGAGTCACTATAACCGGGCTTCGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCGGGCTAAG-C
* *
167229393 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
167229413 CGTTATATCC
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 62 0.76
40 20 0.24
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.22
Consensus pattern (38 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCGGGCTAAGC
Found at i:167234472 original size:40 final size:40
Alignment explanation
Indices: 167234280--167234465 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
167234270 TCGAATGATG
* * * * *
167234280 TCCGGGCTGAGTCCCGAAGGC-TTTATGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
167234320 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
167234360 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
167234400 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
167234441 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
167234466 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:167234483 original size:80 final size:80
Alignment explanation
Indices: 167234314--167234488 Score: 207
Period size: 80 Copynumber: 2.2 Consensus size: 80
167234304 ATGCTAAGTG
**
167234314 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
1 ACTATATCCGGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
**
167234379 GCATTTGTGCGAGTT
66 GCATTTGAACGAGTT
* * * *
167234394 ACCAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCG
1 ACTATATCCGGGTTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGAT-CCG
167234456 AAGGCATTTGAACGAG-T
63 AAGGCATTTGAACGAGTT
167234473 AGCTATATCC-GGTTAA
1 A-CTATATCCGGGTTAA
167234489 ATTTCGAAGG
Statistics
Matches: 81, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
79 10 0.12
80 69 0.85
81 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (80 bp):
ACTATATCCGGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
GCATTTGAACGAGTT
Found at i:167241444 original size:12 final size:12
Alignment explanation
Indices: 167241427--167241452 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
167241417 ATAGGTTTAG
167241427 CATGGCCTAGCA
1 CATGGCCTAGCA
167241439 CATGGCCTAGCA
1 CATGGCCTAGCA
167241451 CA
1 CA
167241453 CGAGCATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.35, G:0.23, T:0.15
Consensus pattern (12 bp):
CATGGCCTAGCA
Found at i:167252124 original size:34 final size:34
Alignment explanation
Indices: 167252086--167252156 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
167252076 TCTGGGCTAA
*
167252086 AGCCCA-TATCAATAGAAATATCAGTGTGGGCCTT
1 AGCCCATTA-CAATAGAAATAACAGTGTGGGCCTT
* * *
167252120 AGCCCATTACAGTAGCAGTAACAGTGTGGGCCTT
1 AGCCCATTACAATAGAAATAACAGTGTGGGCCTT
167252154 AGC
1 AGC
167252157 ACAATTCAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 30 0.94
35 2 0.06
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.24
Consensus pattern (34 bp):
AGCCCATTACAATAGAAATAACAGTGTGGGCCTT
Found at i:167252167 original size:34 final size:33
Alignment explanation
Indices: 167252107--167252172 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 33
167252097 ATAGAAATAT
*
167252107 CAGTGTGGGCCTTAGCCCATTACAGTAGCAGTAA
1 CAGTGTGGGCCTTAGCCAATTACAGTA-CAGTAA
167252141 CAGTGTGGGCCTTAGCACAATT-CAGTACAGTA
1 CAGTGTGGGCCTTAGC-CAATTACAGTACAGTA
167252173 TCAGAATGCA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 5 0.17
34 21 0.70
35 4 0.13
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (33 bp):
CAGTGTGGGCCTTAGCCAATTACAGTACAGTAA
Found at i:167252391 original size:52 final size:52
Alignment explanation
Indices: 167252328--167252427 Score: 148
Period size: 52 Copynumber: 1.9 Consensus size: 52
167252318 GAGCTGCCAG
* * *
167252328 TAATAGGCTTATAGCCTTTTAGTACACTTCCTTC-AATAATATATATATCCCA
1 TAATAGACTTATAGCCTTTCAGTACACCT-CTTCTAATAATATATATATCCCA
*
167252380 TAATAGACTTATAGTCTTTCAGTACACCTCTTCTAATAATATATATAT
1 TAATAGACTTATAGCCTTTCAGTACACCTCTTCTAATAATATATATAT
167252428 ATCCCATCCC
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 4 0.09
52 39 0.91
ACGTcount: A:0.34, C:0.19, G:0.07, T:0.40
Consensus pattern (52 bp):
TAATAGACTTATAGCCTTTCAGTACACCTCTTCTAATAATATATATATCCCA
Found at i:167256792 original size:40 final size:40
Alignment explanation
Indices: 167256747--167256914 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
167256737 CGGAATATAA
167256747 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
167256787 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
167256827 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
167256867 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
167256907 CCGGATAT
1 CCGGATAT
167256915 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:167256897 original size:80 final size:80
Alignment explanation
Indices: 167256763--167256912 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
167256753 ATAATCACGT
*
167256763 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
167256827 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
167256843 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
167256906 CCCGGAT
64 CCCGGAT
167256913 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:167264802 original size:40 final size:40
Alignment explanation
Indices: 167264757--167264923 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
167264747 CGGAATATAA
167264757 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
167264797 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
167264837 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
167264877 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-ATTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
167264916 CCGGATAT
1 CCGGATAT
167264924 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 13 0.13
40 89 0.87
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:167264907 original size:80 final size:79
Alignment explanation
Indices: 167264773--167264921 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
167264763 ATAATCACGT
* *
167264773 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-ATTAGCC
167264838 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
167264853 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTAGC
167264916 CCGGAT
64 CCGGAT
167264922 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 14 0.23
80 46 0.77
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTAGCCC
GGATGTAGCCACTA
Found at i:167271841 original size:29 final size:27
Alignment explanation
Indices: 167271807--167271909 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
167271797 TACTCGATCA
*
167271807 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
167271836 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
167271865 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
167271894 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
167271910 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:167280286 original size:30 final size:30
Alignment explanation
Indices: 167280251--167280308 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 30
167280241 TAGGCACTTC
167280251 CACACGGGTGAT-CCACACGCCCTTGTGTGA
1 CACACGGGT-ATACCACACGCCCTTGTGTGA
167280281 CACACGGGTATACCACACGCCCTTGTGT
1 CACACGGGTATACCACACGCCCTTGTGT
167280309 CATTGCCGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.21, C:0.34, G:0.24, T:0.21
Consensus pattern (30 bp):
CACACGGGTATACCACACGCCCTTGTGTGA
Found at i:167283065 original size:93 final size:93
Alignment explanation
Indices: 167282958--167283129 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
167282948 GCCCATAAGT
* * * *
167282958 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGATTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
167283023 CGAGCTCAGATGCCTAGTTACATCTCTC
66 CGAGCTCAGATGCCTAGTTACATCTCTC
*
167283051 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
167283116 CGAGTTCGGATGCC
66 CGAGCTCAGATGCC
167283130 CAAACATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:167283125 original size:46 final size:46
Alignment explanation
Indices: 167282950--167283125 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
167282940 TGTAACCCGC
* * *
167282950 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
167282996 CCATAAGTGAACTCGGATTCAACTCAACGAGCTC--AGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
167283042 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
167283089 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
167283126 TGCCCAAACA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
46 67 0.64
47 29 0.28
49 5 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:167286832 original size:27 final size:27
Alignment explanation
Indices: 167286802--167286862 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
167286792 CAGCAAGCTG
*
167286802 CCAGTATCAGTTTATGTGGCCAAGCCA
1 CCAGTATCAGTATATGTGGCCAAGCCA
*
167286829 CCAGTAACAGTATATGTGGCCAAGCCA
1 CCAGTATCAGTATATGTGGCCAAGCCA
167286856 CCAGTAT
1 CCAGTAT
167286863 AATACACTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (27 bp):
CCAGTATCAGTATATGTGGCCAAGCCA
Found at i:167293461 original size:40 final size:40
Alignment explanation
Indices: 167293359--167293542 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
167293349 AAATTGAATG
* * * * *
167293359 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
167293399 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
167293439 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
167293479 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
167293519 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
167293543 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:167296547 original size:40 final size:40
Alignment explanation
Indices: 167296343--167296547 Score: 245
Period size: 40 Copynumber: 5.1 Consensus size: 40
167296333 CAGAGTTTAA
** *
167296343 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
167296383 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
167296423 CCGGATTTAGTAACTCGCACAAATGCCTTCGGAACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
167296463 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
167296503 CCGGATATAGTCACTTAGTACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
167296543 CCGGA
1 CCGGA
167296548 CATCATTCGA
Statistics
Matches: 145, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 132 0.91
41 10 0.07
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:167300748 original size:66 final size:68
Alignment explanation
Indices: 167300672--167300858 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
167300662 TAGTACCACT
*
167300672 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
167300734 CACG
65 CACG
167300738 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
167300803 ATCACG
63 ATCACG
167300809 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
167300859 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:167300783 original size:71 final size:71
Alignment explanation
Indices: 167300695--167300858 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
167300685 CGATTTGTCT
167300695 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
167300760 CTTTCA
66 CTTTCA
167300766 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
167300831 CTTTCA
66 CTTTCA
167300837 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
167300859 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:167300896 original size:71 final size:70
Alignment explanation
Indices: 167300695--167300892 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
167300685 CGATTTGTCT
* * *
167300695 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
167300760 CTTTCA
65 CTTTCA
* * *
167300766 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
167300831 CTTTCA
65 CTTTCA
* *
167300837 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
167300893 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:167308315 original size:66 final size:68
Alignment explanation
Indices: 167308239--167308425 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
167308229 TAGTACCACT
*
167308239 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
167308301 CACG
65 CACG
167308305 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
167308370 ATCACG
63 ATCACG
167308376 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
167308426 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Done.