Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 538 of 770
Found at i:167308350 original size:71 final size:71
Alignment explanation
Indices: 167308262--167308425 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
167308252 CGATTTGTCT
167308262 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
167308327 CTTTCA
66 CTTTCA
167308333 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
167308398 CTTTCA
66 CTTTCA
167308404 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
167308426 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:167308463 original size:71 final size:70
Alignment explanation
Indices: 167308262--167308459 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
167308252 CGATTTGTCT
* * *
167308262 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
167308327 CTTTCA
65 CTTTCA
* * *
167308333 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
167308398 CTTTCA
65 CTTTCA
* *
167308404 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
167308460 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:167313644 original size:18 final size:19
Alignment explanation
Indices: 167313621--167313659 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
167313611 AAGAGAAAGG
167313621 TGAGTG-AAGTGCATTTCA
1 TGAGTGCAAGTGCATTTCA
167313639 TGAGTGCAAGTGCATTTCA
1 TGAGTGCAAGTGCATTTCA
167313658 TG
1 TG
167313660 GGACGCTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (19 bp):
TGAGTGCAAGTGCATTTCA
Found at i:167323522 original size:119 final size:119
Alignment explanation
Indices: 167323372--167323805 Score: 645
Period size: 119 Copynumber: 3.6 Consensus size: 119
167323362 CAAATAGACT
*
167323372 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCAAGGACATAGCAGATTTGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
* * *
167323437 GACATTCTCAAAGGCAACAGATCTAGACTTCATATGTTTATACTGAAGCAGATC
66 GACGTTCTCAAAGGCAGCAGATCTAGACTTCAGATGTTTATACTGAAGCAGATC
*
167323491 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
* *
167323556 GACGTTCTCAAAGGCAGCAGATCTAGACTTCAGACGTTTATATTGAAGCAGATC
66 GACGTTCTCAAAGGCAGCAGATCTAGACTTCAGATGTTTATACTGAAGCAGATC
* *
167323610 CAAGATGATTTGGCATCCTTGTGCTCACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
*** *
167323675 GACGTTCTCAAATATAGCAGATCTA-ACCTTCAGATGTTTATGCTGAAGCAGATC
66 GACGTTCTCAAAGGCAGCAGATCTAGA-CTTCAGATGTTTATACTGAAGCAGATC
* * * * * * * *
167323729 CAATATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGACGTTGCAGATATGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
* *
167323794 AATGTTCTCAAA
66 GACGTTCTCAAA
167323806 TAGACTCAAG
Statistics
Matches: 288, Mismatches: 26, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
118 1 0.00
119 287 1.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (119 bp):
CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
GACGTTCTCAAAGGCAGCAGATCTAGACTTCAGATGTTTATACTGAAGCAGATC
Found at i:167323840 original size:83 final size:83
Alignment explanation
Indices: 167323733--167323914 Score: 274
Period size: 83 Copynumber: 2.2 Consensus size: 83
167323723 CAGATCCAAT
* * * * * *
167323733 ATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGACGTTGCAGATATGACTCTCAAATG
1 ATGATTTGGCATCCTTGTGCTTACAAGAAACAAATCAAGAACATTGCAGATATGACTCTCAAATG
167323798 TTCTCAAATAGACTCAAG
66 TTCTCAAATAGACTCAAG
* *
167323816 ATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCAAGAACATTGCAGATATGTCTCTCAAATG
1 ATGATTTGGCATCCTTGTGCTTACAAGAAACAAATCAAGAACATTGCAGATATGACTCTCAAATG
*
167323881 TTCTCAAGTAGACTCAAG
66 TTCTCAAATAGACTCAAG
*
167323899 ATGATTTGACATCCTT
1 ATGATTTGGCATCCTT
167323915 ACAAACCGAA
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
83 89 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (83 bp):
ATGATTTGGCATCCTTGTGCTTACAAGAAACAAATCAAGAACATTGCAGATATGACTCTCAAATG
TTCTCAAATAGACTCAAG
Found at i:167325786 original size:20 final size:19
Alignment explanation
Indices: 167325739--167325786 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
167325729 ATATAATCTT
167325739 TATTATGTT-TTATTTTCA
1 TATTATGTTATTATTTTCA
* *
167325757 TATTAT-TTATTGTTTTTA
1 TATTATGTTATTATTTTCA
167325775 TATATATGTTAT
1 TAT-TATGTTAT
167325787 GTATATCATG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 2 0.08
18 16 0.64
19 3 0.12
20 4 0.16
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.67
Consensus pattern (19 bp):
TATTATGTTATTATTTTCA
Found at i:167327001 original size:21 final size:22
Alignment explanation
Indices: 167326963--167327003 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
167326953 CTCCCGTTTT
* *
167326963 CATTTTTCTTAAAGTCGATTCC
1 CATTTTTCTAAAACTCGATTCC
167326985 CATTTTTC-AAAACTCGATT
1 CATTTTTCTAAAACTCGATT
167327004 TGAAAATGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.27, C:0.22, G:0.07, T:0.44
Consensus pattern (22 bp):
CATTTTTCTAAAACTCGATTCC
Found at i:167327867 original size:40 final size:40
Alignment explanation
Indices: 167327806--167327881 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
167327796 CGCTACTTTA
*
167327806 TGGTGTGTAGGGTTAGATGGGTCAATTTTATCCCCATATT
1 TGGTGTGTAGGGTAAGATGGGTCAATTTTATCCCCATATT
*
167327846 TGGTGTGTAGGGATAAG-TGGGTCGATTTTATCCCCA
1 TGGTGTGTAGGG-TAAGATGGGTCAATTTTATCCCCA
167327882 CATGGTGTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 30 0.91
41 3 0.09
ACGTcount: A:0.20, C:0.13, G:0.30, T:0.37
Consensus pattern (40 bp):
TGGTGTGTAGGGTAAGATGGGTCAATTTTATCCCCATATT
Found at i:167333123 original size:17 final size:17
Alignment explanation
Indices: 167333101--167333137 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
167333091 CTTTAAGGGT
*
167333101 AAAAATGTAAATTTGTC
1 AAAAATGTAAATTTGCC
*
167333118 AAAAATTTAAATTTGCC
1 AAAAATGTAAATTTGCC
167333135 AAA
1 AAA
167333138 GTATGATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.32
Consensus pattern (17 bp):
AAAAATGTAAATTTGCC
Found at i:167333795 original size:46 final size:48
Alignment explanation
Indices: 167333727--167333846 Score: 136
Period size: 46 Copynumber: 2.5 Consensus size: 48
167333717 GACATGTGTA
* * ** *
167333727 CTAGTGTAAGACATTTTTAGGACATACATCGGCCAC-A-TTATGAGAG
1 CTAGTGTAAGACATGTCTAGGACATACATCGGCCACGAGACATGAAAG
* * * *
167333773 CTAGTGTAAGACATGTCCAGGACATGCATCTGCCTCGAGACATGAAAG
1 CTAGTGTAAGACATGTCTAGGACATACATCGGCCACGAGACATGAAAG
167333821 CTAGTGTAAGACCATGTCTAGGACAT
1 CTAGTGTAAGA-CATGTCTAGGACAT
167333847 GGCATCAGCT
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
46 30 0.49
47 1 0.02
48 17 0.28
49 13 0.21
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (48 bp):
CTAGTGTAAGACATGTCTAGGACATACATCGGCCACGAGACATGAAAG
Found at i:167339244 original size:21 final size:20
Alignment explanation
Indices: 167339220--167339300 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 20
167339210 TAATAGGATG
* *
167339220 ATAACAATAATGAAAATGACA
1 ATAACAATAAT-AAAATAATA
**
167339241 ATAATGATAATAATAATAATA
1 ATAACAATAATAA-AATAATA
*
167339262 ATAACGATAATAAAAATAATA
1 ATAACAATAAT-AAAATAATA
167339283 ATAACAATAAT-AAATAAT
1 ATAACAATAATAAAATAAT
167339301 CTAAATTTTA
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
19 7 0.13
20 2 0.04
21 41 0.79
22 2 0.04
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.26
Consensus pattern (20 bp):
ATAACAATAATAAAATAATA
Found at i:167339255 original size:3 final size:3
Alignment explanation
Indices: 167339240--167339300 Score: 68
Period size: 3 Copynumber: 20.0 Consensus size: 3
167339230 TGAAAATGAC
* * * * *
167339240 AAT AAT GAT AAT AAT AAT AAT AAT AAC GAT AAT AAA AAT AAT AAT AAC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
167339288 AAT AAT AAAT AAT
1 AAT AAT -AAT AAT
167339301 CTAAATTTTA
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
3 44 0.94
4 3 0.06
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:167339431 original size:4 final size:4
Alignment explanation
Indices: 167339422--167339496 Score: 71
Period size: 4 Copynumber: 18.5 Consensus size: 4
167339412 AAGTAGAAGT
* * ** *
167339422 AATA AATA AATA ATATG AA-C AATA AACG AATA AATA ACATA AAAA AATA
1 AATA AATA AATA A-ATA AATA AATA AATA AATA AATA A-ATA AATA AATA
*
167339471 AATG AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
167339497 ACAAGTAAAT
Statistics
Matches: 57, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
3 2 0.04
4 48 0.84
5 7 0.12
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.21
Consensus pattern (4 bp):
AATA
Found at i:167339477 original size:25 final size:25
Alignment explanation
Indices: 167339442--167339511 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
167339432 TAATATGAAC
*
167339442 AATAAACGAATAAATAACATAAAAA
1 AATAAAAGAATAAATAACATAAAAA
* *
167339467 AATAAATGAATAAATAA-ATAAATA
1 AATAAAAGAATAAATAACATAAAAA
*
167339491 AATAAAACAAGTAAATAACAT
1 AATAAAAGAA-TAAATAACAT
167339512 TAAATTTGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
24 14 0.36
25 23 0.59
26 2 0.05
ACGTcount: A:0.70, C:0.06, G:0.04, T:0.20
Consensus pattern (25 bp):
AATAAAAGAATAAATAACATAAAAA
Found at i:167339483 original size:37 final size:37
Alignment explanation
Indices: 167339423--167339495 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 37
167339413 AGTAGAAGTA
* * *
167339423 ATAAATAAATAATATGAACAATAAACGAATAAATAAC
1 ATAAAAAAATAATATGAAAAATAAACAAATAAATAAC
*
167339460 ATAAAAAAATAA-ATGAATAAATAAATAAATAAATAA
1 ATAAAAAAATAATATGAA-AAATAAACAAATAAATAA
167339496 AACAAGTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 5 0.16
37 26 0.84
ACGTcount: A:0.70, C:0.04, G:0.04, T:0.22
Consensus pattern (37 bp):
ATAAAAAAATAATATGAAAAATAAACAAATAAATAAC
Found at i:167341156 original size:12 final size:12
Alignment explanation
Indices: 167341134--167341172 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
167341124 TTTATAATCG
167341134 AACTAGATCGATT
1 AACT-GATCGATT
167341147 AACTGATCGATT
1 AACTGATCGATT
* *
167341159 AACCGATTGATT
1 AACTGATCGATT
167341171 AA
1 AA
167341173 TTGAATTAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 20 0.83
13 4 0.17
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (12 bp):
AACTGATCGATT
Found at i:167342288 original size:15 final size:15
Alignment explanation
Indices: 167342265--167342324 Score: 61
Period size: 15 Copynumber: 4.1 Consensus size: 15
167342255 ATGAAGACAC
167342265 ATAATAATGCTAATA
1 ATAATAATGCTAATA
* * *
167342280 ATGATAATGATAGTA
1 ATAATAATGCTAATA
*
167342295 ATAATGATGCTAAT-
1 ATAATAATGCTAATA
167342309 ATAATAA-GCGTAATA
1 ATAATAATGC-TAATA
167342324 A
1 A
167342325 CGGTAAAAAT
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
13 2 0.06
14 10 0.29
15 23 0.66
ACGTcount: A:0.50, C:0.05, G:0.13, T:0.32
Consensus pattern (15 bp):
ATAATAATGCTAATA
Found at i:167342383 original size:3 final size:3
Alignment explanation
Indices: 167342375--167342405 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
167342365 ACAAACAAAA
*
167342375 AAT AAT AAT AAT AAT ATT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
167342406 GTAAAAGTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:167342723 original size:47 final size:47
Alignment explanation
Indices: 167342608--167342726 Score: 111
Period size: 47 Copynumber: 2.5 Consensus size: 47
167342598 ATATAAAAGG
* *
167342608 TAAATAT-AATACAATAATAATATTAAATAAAGTAATTAAGATAATAC
1 TAAATATAAATAAAATAATAATA-TAAATAAAGTAACTAAGATAATAC
* * * * *
167342655 TATATATATAT-ATATGTATAATA-AAATATATGT-ACTAAGATTAATAC
1 TAAATATAAATAAAAT-AATAATATAAATA-AAGTAACTAAGA-TAATAC
167342702 TAAATATAAATAAAATAATAATATA
1 TAAATATAAATAAAATAATAATATA
167342727 TACAGAATAT
Statistics
Matches: 55, Mismatches: 11, Indels: 11
0.71 0.14 0.14
Matches are distributed among these distances:
46 11 0.20
47 32 0.58
48 12 0.22
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.35
Consensus pattern (47 bp):
TAAATATAAATAAAATAATAATATAAATAAAGTAACTAAGATAATAC
Found at i:167343356 original size:3 final size:3
Alignment explanation
Indices: 167343348--167343412 Score: 112
Period size: 3 Copynumber: 21.3 Consensus size: 3
167343338 ACACATTAGA
167343348 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
167343396 AAT AAT GAT AAT GAAT A
1 AAT AAT AAT AAT -AAT A
167343413 TTTTTCAGAA
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
3 56 0.95
4 3 0.05
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:167345097 original size:46 final size:46
Alignment explanation
Indices: 167345047--167345222 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
167345037 TGGTTGAGCA
167345047 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
167345093 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
167345138 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
167345186 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
167345223 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:167345203 original size:93 final size:93
Alignment explanation
Indices: 167345044--167345215 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
167345034 GGATGGTTGA
* *
167345044 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
167345109 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
167345137 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
167345202 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
167345216 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:167352669 original size:46 final size:46
Alignment explanation
Indices: 167352619--167352794 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
167352609 TGGTTGAGCA
167352619 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
167352665 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
167352710 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
167352758 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
167352795 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:167352775 original size:93 final size:93
Alignment explanation
Indices: 167352616--167352787 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
167352606 GGATGGTTGA
* *
167352616 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
167352681 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
167352709 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
167352774 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
167352788 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:167356398 original size:24 final size:24
Alignment explanation
Indices: 167356366--167356568 Score: 306
Period size: 24 Copynumber: 8.6 Consensus size: 24
167356356 TATCTCAAAT
*
167356366 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
167356390 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
167356414 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
167356438 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
167356462 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
167356486 GCACTATGTGTGCGA-TT-CT-TA
1 GCACTATGTGTGCGATTTACTATG
* *
167356507 GCACTA-GTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
167356530 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
167356554 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
167356569 ACATAATAAG
Statistics
Matches: 170, Mismatches: 5, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
20 8 0.05
21 9 0.05
22 4 0.02
23 10 0.06
24 139 0.82
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:167364137 original size:24 final size:24
Alignment explanation
Indices: 167364105--167364311 Score: 324
Period size: 24 Copynumber: 8.6 Consensus size: 24
167364095 TATCTCAAAT
*
167364105 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
167364129 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
167364153 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
167364177 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
167364201 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
167364225 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* * *
167364249 GCACTACGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
167364273 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
167364297 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
167364312 ACATAATAAG
Statistics
Matches: 175, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 175 1.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:167366151 original size:44 final size:44
Alignment explanation
Indices: 167366095--167366572 Score: 593
Period size: 44 Copynumber: 10.9 Consensus size: 44
167366085 CTGTTATTTC
* * * *
167366095 CGATTTGCTCTCTGCCAACACTA-AGATGTCAAATCTGCTATGTT
1 CGATCTGCTCTCTGCCAATAC-AGAGATGCCAAATCTGCTATCTT
* ** *
167366139 CGATCCGCTCTCTGATAATACAGAAATGCCAAATCTGCTATCTT
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTT
* *
167366183 CGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTT
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTT
* * ** *
167366227 CTATCTGCTCTCCGCCAATACAGAGACACCAAATGTGCTATCTT
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTT
* *
167366271 CGATCTGCTCTCCGCCAATACAGAGATGCCAAATCTGCTATTTT
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTT
*
167366315 CGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCTT
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTT
* * *
167366359 CGATCTGCTCT-TCGCCGATACAGAGATGTCAAATCTGTTATCTT
1 CGATCTGCTCTCT-GCCAATACAGAGATGCCAAATCTGCTATCTT
* * ** *
167366403 CGATCTGCCCTCTGACAATACAGAGACACCAAATCTGCTACCTT
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTT
* * * *
167366447 CGATCTGCCCTCTGACAATACAGAGACGCCAAATC-GACTACCTT
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTG-CTATCTT
* * *
167366491 CGATCTGCTCTCCGCCAATACAGAGACGCCAAATCCGCTATCTT
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTT
* *
167366535 CGATCTGCTCTCCGCCAATATAGAGATGCCAAATCTGC
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGC
167366573 AGGATTTGCC
Statistics
Matches: 384, Mismatches: 45, Indels: 10
0.87 0.10 0.02
Matches are distributed among these distances:
43 3 0.01
44 379 0.99
45 2 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (44 bp):
CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTT
Found at i:167368814 original size:37 final size:37
Alignment explanation
Indices: 167368755--167368861 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
167368745 AGCTCAGACG
*
167368755 AAATCTCCACACGA-AGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACAC-ATAGTCATCGGGTCTTACCCGGACA
*
167368792 AAATCTCCACACATAGTCATCGGGTCTCACCCGGACA
1 AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
* *
167368829 TAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACATAGTCATCGGGTCTTACCCG
167368862 AAATATATTT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
36 1 0.02
37 63 0.98
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
Found at i:167369068 original size:50 final size:50
Alignment explanation
Indices: 167369014--167369110 Score: 151
Period size: 50 Copynumber: 1.9 Consensus size: 50
167369004 ATCGCCTACG
167369014 TATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCATATATA
1 TATTTCACA-TAGACCATTCGGCTTTACCACATATACATATCTCATATATA
* * *
167369064 TATTTCACATTGACCATTCGGCTTTACCACGTATGCATATCTCATAT
1 TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATAT
167369111 TCATCACATT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
49 2 0.05
50 41 0.95
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.37
Consensus pattern (50 bp):
TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATATATA
Found at i:167369167 original size:47 final size:47
Alignment explanation
Indices: 167369068--167369260 Score: 237
Period size: 47 Copynumber: 4.1 Consensus size: 47
167369058 TATATATATT
* * * * *
167369068 TCACATTGACCATTCGGCTTTA-C-CACGTATGCATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTCACATTCA
*
167369114 TCACATTGGCCATTCAGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* * *
167369161 TCACATTGGCCATTCGGCCTTATAACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* * * **
167369208 TCACATTGGCCATTCGGCCTTATCTCATATATACATATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
167369255 TCACAT
1 TCACAT
167369261 AAAATCCTAA
Statistics
Matches: 131, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
46 19 0.15
47 102 0.78
48 10 0.08
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
Found at i:167381522 original size:10 final size:9
Alignment explanation
Indices: 167381500--167381525 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
167381490 AAAACTAGCC
167381500 TTTTTAAAA
1 TTTTTAAAA
167381509 TTTTTAAAA
1 TTTTTAAAA
167381518 TTTTTAAA
1 TTTTTAAA
167381526 TTTAATGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:167382356 original size:130 final size:130
Alignment explanation
Indices: 167382180--167382497 Score: 361
Period size: 131 Copynumber: 2.4 Consensus size: 130
167382170 TGTTCGATCG
* ** * * * * *
167382180 TTTTGAGCAAACGGGAAATCACAACCCAGCACGATAGGGCATGATT-CTCGAATTGTCAAATGCC
1 TTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTG-CAAATACC
* * ** *
167382244 AAATATTGCCTTCGTTTCAAATAATTTTTAGGAGATATGAATGAAATTTTGAAG-GATACTCGAT
65 AAATATCGCCTTCGTTTCAAA-AAGTTTTAAAAGACATGAATGAAATTTTGAAGTGATACTCGAT
167382308 TA
129 TA
* *
167382310 TTTTAAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCTAAATATC
1 TTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGC-AAATACC
* * * * ** * * *
167382375 GAATCTCGTCTTTGTTTTGAAGAGTTTTAAAAGACATGAGTGAAATTTTGAAGTGATATTCGATT
65 AAATATCGCCTTCGTTTCAAAAAGTTTTAAAAGACATGAATGAAATTTTGAAGTGATACTCGATT
167382440 A
130 A
* *
167382441 TTTCGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACAATTCCGCGAATTGC
1 TTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGC
167382498 CAAACATCGA
Statistics
Matches: 158, Mismatches: 27, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
130 66 0.42
131 92 0.58
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (130 bp):
TTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCAAATACCA
AATATCGCCTTCGTTTCAAAAAGTTTTAAAAGACATGAATGAAATTTTGAAGTGATACTCGATTA
Found at i:167382465 original size:131 final size:130
Alignment explanation
Indices: 167382280--167382533 Score: 418
Period size: 131 Copynumber: 1.9 Consensus size: 130
167382270 TTTAGGAGAT
*
167382280 ATGAATGAAATTTTGAAGGATACTCGATTATTTTAAGCAAACGCGAAATTGCAACCCAACACGTT
1 ATGAATGAAATTTTGAAGGATACTCGATTATTTCAAGCAAACGCGAAATTGCAACCCAACACGTT
* * * * *
167382345 AGGGCACGATTCCGCGAATTGCTAAATATCGAATCTCGTCTTTGTTTTGAAGAGTTTTAAAAGAC
66 AGGGCACAATTCCGCGAATTGCCAAACATCGAATCTCGTCTTCGTTTTGAAGAATTTTAAAAGAC
* * *
167382410 ATGAGTGAAATTTTGAAGTGATATTCGATTATTTCGAGCAAACGCGAAATTGCAACCCAACACGT
1 ATGAATGAAATTTTGAAG-GATACTCGATTATTTCAAGCAAACGCGAAATTGCAACCCAACACGT
167382475 TAGGGCACAATTCCGCGAATTGCCAAACATCGAATCTCGTCTTCGTTTTGAAGAATTTT
65 TAGGGCACAATTCCGCGAATTGCCAAACATCGAATCTCGTCTTCGTTTTGAAGAATTTT
167382534 TGAATGAATG
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
130 17 0.15
131 97 0.85
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (130 bp):
ATGAATGAAATTTTGAAGGATACTCGATTATTTCAAGCAAACGCGAAATTGCAACCCAACACGTT
AGGGCACAATTCCGCGAATTGCCAAACATCGAATCTCGTCTTCGTTTTGAAGAATTTTAAAAGAC
Found at i:167388917 original size:29 final size:29
Alignment explanation
Indices: 167388884--167388965 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
167388874 TGACGAGATA
*
167388884 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
167388913 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
167388942 GGCACTAAGTGTGCATGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAA
167388966 AAAAAAATAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:167396144 original size:29 final size:29
Alignment explanation
Indices: 167396111--167396192 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
167396101 TGACGAGATA
*
167396111 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
167396140 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
167396169 GGCACTAAGTGTGCATGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAA
167396193 AAAAAAATAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:167410012 original size:40 final size:40
Alignment explanation
Indices: 167409957--167410120 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
167409947 TGAATGATAC
* * *
167409957 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
167409997 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
167410037 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
167410077 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
167410117 CCGG
1 CCGG
167410121 TTAAATCCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:167412727 original size:46 final size:46
Alignment explanation
Indices: 167412559--167412731 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
167412549 AACCCGCCCC
** * * *
167412559 TAAGTGAACTCGGACTCAACTCAACGAACTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
167412605 TAAATGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
167412653 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
*
167412698 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
167412732 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 57 0.55
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:167412727 original size:93 final size:93
Alignment explanation
Indices: 167412564--167412734 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
167412554 GCCCCTAAGT
* * *
167412564 GAACTCGGACTCAACTCAACGAACTCGGGCGTTCGCATCCATAAATGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
167412629 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
** * *
167412657 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
167412722 TGAGTTCGGATGC
66 CGAGTTCGGATGC
167412735 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:167416468 original size:15 final size:15
Alignment explanation
Indices: 167416448--167416502 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
167416438 GTATCTTGGG
167416448 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
167416463 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
167416478 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
167416493 TTTCTTTATT
1 TTTCTTTATT
167416503 TGATTTTCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 2 0.06
15 31 0.91
16 1 0.03
ACGTcount: A:0.11, C:0.15, G:0.13, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:167416480 original size:30 final size:30
Alignment explanation
Indices: 167416444--167416502 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
167416434 TATCGTATCT
*
167416444 TGGGTTTCTTTAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTCTATCT-TGGATTTCTTTATTC
167416474 TGGGTTTCTCTATCTTGGATTTCTTTATT
1 TGGGTTTCTCTATCTTGGATTTCTTTATT
167416503 TGATTTTCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.10, C:0.14, G:0.17, T:0.59
Consensus pattern (30 bp):
TGGGTTTCTCTATCTTGGATTTCTTTATTC
Found at i:167420612 original size:29 final size:28
Alignment explanation
Indices: 167420523--167420633 Score: 113
Period size: 28 Copynumber: 4.0 Consensus size: 28
167420513 ATAATGTGAT
167420523 TTGGGCCAGATGGGCCATAT-AAATGAGA
1 TTGGGCCAGATGGGCCATATGAAATGA-A
167420551 TTGGGCCTA-ATGGGCCATATGAATATGAA
1 TTGGGCC-AGATGGGCCATATGAA-ATGAA
* *
167420580 TTGGGCC-GATAGGCCATATGAACGTGAA
1 TTGGGCCAGATGGGCCATATGAA-ATGAA
* * *
167420608 TTTGGCCGGATGGGCCATCT-AAATGA
1 TTGGGCCAGATGGGCCATATGAAATGA
167420634 GATTCGACTT
Statistics
Matches: 71, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
27 3 0.04
28 43 0.61
29 21 0.30
30 4 0.06
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (28 bp):
TTGGGCCAGATGGGCCATATGAAATGAA
Found at i:167426473 original size:27 final size:27
Alignment explanation
Indices: 167426435--167426547 Score: 149
Period size: 27 Copynumber: 4.2 Consensus size: 27
167426425 GAGGAAGCGT
167426435 TCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
*
167426462 TCTGGTGGCTCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
*
167426490 TCTGATGGCTCTGCCACAATATCTGTA
1 TCTGGTGGCTCTGCCACAATATCTGTA
* * *
167426517 TCTGGCGACTCTGTCACAATATCTGT-
1 TCTGGTGGCTCTGCCACAATATCTGTA
167426543 TCTGG
1 TCTGG
167426548 CAACCATGCT
Statistics
Matches: 78, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
26 5 0.06
27 57 0.73
28 16 0.21
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAATATCTGTA
Found at i:167426541 original size:54 final size:55
Alignment explanation
Indices: 167426434--167426543 Score: 161
Period size: 55 Copynumber: 2.0 Consensus size: 55
167426424 GGAGGAAGCG
* * *
167426434 TTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGATGGCTCTGCCACAAATATCTGATCTGGCGACTCTGCCACAAATATCTGT
*
167426489 TTCTGATGGCTCTGCCAC-AATATCTGTATCTGGCGACTCTGTCAC-AATATCTGT
1 TTCTGATGGCTCTGCCACAAATATCTG-ATCTGGCGACTCTGCCACAAATATCTGT
167426543 T
1 T
167426544 CTGGCAACCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 18 0.36
55 32 0.64
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (55 bp):
TTCTGATGGCTCTGCCACAAATATCTGATCTGGCGACTCTGCCACAAATATCTGT
Found at i:167433175 original size:40 final size:40
Alignment explanation
Indices: 167433090--167433240 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
167433080 AATTGAATGA
* * *
167433090 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
167433130 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
167433171 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
167433210 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
167433241 ATGGTTATAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:167441154 original size:38 final size:40
Alignment explanation
Indices: 167441064--167441211 Score: 139
Period size: 39 Copynumber: 3.8 Consensus size: 40
167441054 AATTGAATGA
* * *
167441064 TATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
167441103 TATCCGGGTTAAGACCCG-AGGCAATTGTGCTAGGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GACATAC
*
167441142 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
167441181 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
167441212 ACATGGTTAT
Statistics
Matches: 89, Mismatches: 11, Indels: 17
0.76 0.09 0.15
Matches are distributed among these distances:
38 23 0.26
39 33 0.37
40 31 0.35
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:167441194 original size:78 final size:78
Alignment explanation
Indices: 167441065--167441211 Score: 192
Period size: 78 Copynumber: 1.9 Consensus size: 78
167441055 ATTGAATGAT
*
167441065 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCG-AGGCAATT
1 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
167441129 GTGCTAGGGCTAC
66 GTGCTAGGGCTAC
* * * *
167441142 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
167441205 TTTGTGC
63 ATTGTGC
167441212 ACATGGTTAT
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
77 16 0.27
78 33 0.55
79 11 0.18
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (78 bp):
ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
GTGCTAGGGCTAC
Found at i:167448480 original size:40 final size:40
Alignment explanation
Indices: 167448374--167448557 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
167448364 TGCTGGAAAT
* * * * * **
167448374 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
167448414 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
167448454 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
167448492 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
167448533 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
167448558 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:167451002 original size:47 final size:47
Alignment explanation
Indices: 167450930--167451269 Score: 480
Period size: 47 Copynumber: 7.3 Consensus size: 47
167450920 CCCTTCGGGA
* * * * * * *
167450930 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
167450977 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
167451024 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
167451071 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
167451118 CTTATCACATATATACACACTTTCATATTCATCACAT----C----GGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
167451159 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
167451206 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
167451255 CTTATCACATATATA
1 CTTATCACATATATA
167451270 TATCTCATAC
Statistics
Matches: 268, Mismatches: 13, Indels: 24
0.88 0.04 0.08
Matches are distributed among these distances:
39 20 0.07
41 17 0.06
43 1 0.00
45 1 0.00
47 162 0.60
49 67 0.25
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:167451008 original size:25 final size:25
Alignment explanation
Indices: 167450980--167451058 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
167450970 ACTCGGCCCT
*
167450980 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
167451005 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
167451027 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
167451052 ATCACAT
1 ATCACAT
167451059 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:167451187 original size:39 final size:40
Alignment explanation
Indices: 167451115--167451247 Score: 160
Period size: 41 Copynumber: 3.1 Consensus size: 40
167451105 TCGGCCATTA
*
167451115 GGCCTTATCACATATATACACACTTTCATATTCATCACATC
1 GGCCTTATCACATATATA-ACACTTTCACATTCATCACATC
167451156 GGCCTTATCACATATAT-ACACTTTCACATTCATCACATCGGCC
1 GGCCTTATCACATATATAACACTTTCACATTCATCACAT----C
167451199 ATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATC
1 ----GGCCTTATCACATATATA-ACACTTTCACATTCATCACATC
167451244 GGCC
1 GGCC
167451248 ATTAGGCCTT
Statistics
Matches: 81, Mismatches: 1, Indels: 20
0.79 0.01 0.20
Matches are distributed among these distances:
39 20 0.25
41 21 0.26
43 1 0.01
45 1 0.01
47 17 0.21
49 21 0.26
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (40 bp):
GGCCTTATCACATATATAACACTTTCACATTCATCACATC
Found at i:167451199 original size:88 final size:88
Alignment explanation
Indices: 167450972--167451247 Score: 430
Period size: 88 Copynumber: 3.1 Consensus size: 88
167450962 CGTTGGCCAC
* * *
167450972 TCGGCCCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
1 TCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
167451037 TACAC-C-TTCACATTCATCACA
66 TACACACTTTCACATTCATCACA
167451058 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 T----C----GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
167451123 CACATATATACACACTTTCATATTCATCACA
58 CACATATATACACACTTTCACATTCATCACA
167451154 TCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
167451219 TACACACTTTCACATTCATCACA
66 TACACACTTTCACATTCATCACA
167451242 TCGGCC
1 TCGGCC
167451248 ATTAGGCCTT
Statistics
Matches: 175, Mismatches: 5, Indels: 18
0.88 0.03 0.09
Matches are distributed among these distances:
86 1 0.01
88 91 0.52
90 1 0.01
92 1 0.01
94 65 0.37
95 1 0.01
96 15 0.09
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (88 bp):
TCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
TACACACTTTCACATTCATCACA
Found at i:167455455 original size:40 final size:40
Alignment explanation
Indices: 167455378--167455564 Score: 295
Period size: 40 Copynumber: 4.7 Consensus size: 40
167455368 CCAGCATGAT
* *
167455378 TGCTCTTC-GGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
* * *
167455417 TGCTCTTCGGGACTTAGTCCGGTTGCATTACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
167455457 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
167455497 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
167455537 TGCTCTTCGGGATTTAGTCCGGATACAT
1 TGCTCTTCGGGACTTAGTCCGGATACAT
167455565 ATACACATAT
Statistics
Matches: 136, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 8 0.06
40 128 0.94
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
Found at i:167457747 original size:25 final size:25
Alignment explanation
Indices: 167457719--167457797 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
167457709 ACTCGGCCCT
*
167457719 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
167457744 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
167457766 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
167457791 ATCACAT
1 ATCACAT
167457798 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:167457843 original size:49 final size:49
Alignment explanation
Indices: 167457669--167457971 Score: 474
Period size: 49 Copynumber: 6.3 Consensus size: 49
167457659 CCCTTCGGGA
* * * * * * *
167457669 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
167457716 CCTATCACATATAT--ACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
167457763 CTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
167457810 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
167457859 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
167457908 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
167457957 CTTATCACATATATA
1 CTTATCACATATATA
167457972 TATCTCATAC
Statistics
Matches: 242, Mismatches: 8, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
47 95 0.39
48 3 0.01
49 144 0.60
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:167469311 original size:14 final size:14
Alignment explanation
Indices: 167469275--167469317 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
167469265 AAATGCACGA
* *
167469275 AAAAATAGAAAGAC
1 AAAAACAGAGAGAC
167469289 AAAAGACAGAGAGAC
1 AAAA-ACAGAGAGAC
167469304 AAAAACAGACGAGA
1 AAAAACAGA-GAGA
167469318 GAGGAAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 9 0.36
15 16 0.64
ACGTcount: A:0.65, C:0.12, G:0.21, T:0.02
Consensus pattern (14 bp):
AAAAACAGAGAGAC
Found at i:167470472 original size:8 final size:8
Alignment explanation
Indices: 167470461--167470507 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
167470451 AAAGTCCTAA
167470461 AAAATTAT
1 AAAATTAT
*
167470469 AAAATAAT
1 AAAATTAT
167470477 AAAAATT-T
1 -AAAATTAT
167470485 AAAATTAT
1 AAAATTAT
*
167470493 TAAATTAT
1 AAAATTAT
*
167470501 TAAATTA
1 AAAATTA
167470508 ACCTAAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
7 6 0.18
8 23 0.68
9 5 0.15
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
AAAATTAT
Found at i:167472202 original size:93 final size:93
Alignment explanation
Indices: 167472043--167472214 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
167472033 GGATGGTTGA
* *** *
167472043 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAGT
167472108 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
** *
167472136 GCATCCGAGGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAGT
167472201 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
167472215 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:167472219 original size:46 final size:46
Alignment explanation
Indices: 167472044--167472221 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
167472034 GATGGTTGAG
*
167472044 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
** * * * * * *
167472090 TGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-A
**
167472137 CATCCGAGGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * *
167472183 CACCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
167472222 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 22, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 70 0.67
47 33 0.31
48 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:167478265 original size:39 final size:40
Alignment explanation
Indices: 167478108--167478284 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
167478098 TGGATGATAA
* * *
167478108 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
167478148 CCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
167478188 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
167478228 CCGGGCTATGT-CCGAAGGCATTCGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
167478267 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
167478285 TACTTGGCTT
Statistics
Matches: 122, Mismatches: 12, Indels: 7
0.87 0.09 0.05
Matches are distributed among these distances:
38 7 0.06
39 32 0.26
40 83 0.68
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:167490887 original size:9 final size:9
Alignment explanation
Indices: 167490873--167491080 Score: 116
Period size: 9 Copynumber: 22.6 Consensus size: 9
167490863 TATTTAAGTA
167490873 TTATGTAAG
1 TTATGTAAG
*
167490882 TTATGTAAT
1 TTATGTAAG
*
167490891 TTATGATATG
1 TTATG-TAAG
* * *
167490901 ATATAT-AT
1 TTATGTAAG
*
167490909 TTATGTAAA
1 TTATGTAAG
* *
167490918 TTATAT-AT
1 TTATGTAAG
*
167490926 TTATCTAAG
1 TTATGTAAG
167490935 TTATGTAAG
1 TTATGTAAG
*
167490944 TTATGTAAA
1 TTATGTAAG
*
167490953 TTATGATATAAAA
1 TTATG---T-AAG
*
167490966 TATATTTAAG
1 T-TATGTAAG
167490976 TATTATGTAAG
1 --TTATGTAAG
167490987 TTATGTAAG
1 TTATGTAAG
* *
167490996 TTATAT-AT
1 TTATGTAAG
*
167491004 TTATCTAAG
1 TTATGTAAG
*
167491013 TTATATAAG
1 TTATGTAAG
*
167491022 TTATGTATG
1 TTATGTAAG
*
167491031 TTATATAAG
1 TTATGTAAG
167491040 TTATGTAAG
1 TTATGTAAG
* *
167491049 TTATATATG
1 TTATGTAAG
*
167491058 TTATATAAG
1 TTATGTAAG
* *
167491067 CTATGTAAA
1 TTATGTAAG
167491076 TTATG
1 TTATG
167491081 ATATCAAATA
Statistics
Matches: 152, Mismatches: 36, Indels: 22
0.72 0.17 0.10
Matches are distributed among these distances:
8 16 0.11
9 112 0.74
10 7 0.05
11 8 0.05
12 2 0.01
13 4 0.03
14 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:167490944 original size:62 final size:63
Alignment explanation
Indices: 167490873--167491111 Score: 222
Period size: 62 Copynumber: 3.9 Consensus size: 63
167490863 TATTTAAGTA
* * * * * *
167490873 TTATGTAAGTTATGTAATTTATGATATGATATATATTTATGTAAATTATAT-ATTTATCTAAG
1 TTATATAAGTTATGTAAATTATGATATGAAATATATTTATGTAAATTATGTAAGTTATATAAG
* * * *
167490935 TTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGT--ATTATGTAAGTTATGTAAG
1 TTATATAAGTTATGTAAATTATGATATGAAATATATTTATGTAAATTATGTAAGTTATATAAG
* * * * ** * * * *
167490996 TTATAT-ATTTATCTAAGTTAT-ATAAGTTATGTATGTTATATAAGTTATGTAAGTTATATATG
1 TTATATAAGTTATGTAAATTATGATATGAAATATAT-TTATGTAAATTATGTAAGTTATATAAG
* *
167491058 TTATATAAGCTATGTAAATTATGATATCAAATATATTTATGT--ATTATGTAAGTT
1 TTATATAAGTTATGTAAATTATGATATGAAATATATTTATGTAAATTATGTAAGTT
167491112 TTTTATTTCA
Statistics
Matches: 139, Mismatches: 32, Indels: 13
0.76 0.17 0.07
Matches are distributed among these distances:
59 8 0.06
60 22 0.16
61 25 0.18
62 60 0.43
63 16 0.12
64 8 0.06
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.48
Consensus pattern (63 bp):
TTATATAAGTTATGTAAATTATGATATGAAATATATTTATGTAAATTATGTAAGTTATATAAG
Found at i:167490956 original size:18 final size:18
Alignment explanation
Indices: 167490873--167491080 Score: 134
Period size: 18 Copynumber: 11.3 Consensus size: 18
167490863 TATTTAAGTA
* *
167490873 TTATGTAAGTTATGTAAT
1 TTATGTAAGTTATATAAG
* * *
167490891 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATATAAG
* *
167490909 TTATGTAAATTATAT-AT
1 TTATGTAAGTTATATAAG
* *
167490926 TTATCTAAGTTATGTAAG
1 TTATGTAAGTTATATAAG
* *
167490944 TTATGTAAATTATGATATAAAA
1 TTATGT-AAGT-T-ATAT-AAG
* *
167490966 TATATTTAAGTATTATGTAAG
1 T-TATGTAAG--TTATATAAG
*
167490987 TTATGTAAGTTATAT-AT
1 TTATGTAAGTTATATAAG
*
167491004 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
*
167491022 TTATGTATGTTATATAAG
1 TTATGTAAGTTATATAAG
*
167491040 TTATGTAAGTTATATATG
1 TTATGTAAGTTATATAAG
* * * *
167491058 TTATATAAGCTATGTAAA
1 TTATGTAAGTTATATAAG
167491076 TTATG
1 TTATG
167491081 ATATCAAATA
Statistics
Matches: 147, Mismatches: 33, Indels: 20
0.74 0.17 0.10
Matches are distributed among these distances:
17 36 0.24
18 73 0.50
19 10 0.07
20 8 0.05
21 6 0.04
22 8 0.05
23 5 0.03
24 1 0.01
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (18 bp):
TTATGTAAGTTATATAAG
Found at i:167490994 original size:105 final size:105
Alignment explanation
Indices: 167490849--167491052 Score: 286
Period size: 105 Copynumber: 1.9 Consensus size: 105
167490839 ACTAGTTATG
* * * *
167490849 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAATTTATGATATGATATAT-ATTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-ATATATAAGTTAT
* *
167490913 GTAAATTATATAT-TTATCTAAGTTATGTAAGTTATGTAAAT
64 ATAAATTATATATGTTATATAAGTTATGTAAGTTATGTAAAT
* *
167490954 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
* *
167491019 AAGTTATGTATGTTATATAAGTTATGTAAGTTAT
66 AAATTATATATGTTATATAAGTTATGTAAGTTAT
167491053 ATATGTTATA
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
103 4 0.05
104 19 0.22
105 64 0.74
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (105 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
AAATTATATATGTTATATAAGTTATGTAAGTTATGTAAAT
Found at i:167491042 original size:27 final size:27
Alignment explanation
Indices: 167490873--167491084 Score: 143
Period size: 27 Copynumber: 8.0 Consensus size: 27
167490863 TATTTAAGTA
* *
167490873 TTATGTAAGTTATGTAATTTATGATATG
1 TTATATAAGTTATGTAAGTTAT-ATATG
* * *
167490901 ATATAT-ATTTATGTAAATTATATAT-
1 TTATATAAGTTATGTAAGTTATATATG
* * **
167490926 TTATCTAAGTTATGTAAGTTATGTAAA
1 TTATATAAGTTATGTAAGTTATATATG
* ** *
167490953 TTATGAT-A-TAAAATATA-TT-TA-AGTA
1 TTAT-ATAAGTTATGTA-AGTTATATA-TG
* *
167490978 TTATGTAAGTTATGTAAGTTATATATT
1 TTATATAAGTTATGTAAGTTATATATG
* * *
167491005 -TATCTAAGTTATATAAGTTATGTATG
1 TTATATAAGTTATGTAAGTTATATATG
167491031 TTATATAAGTTATGTAAGTTATATATG
1 TTATATAAGTTATGTAAGTTATATATG
* *
167491058 TTATATAAGCTATGTAAATTATGATAT
1 TTATATAAGTTATGTAAGTTAT-ATAT
167491085 CAAATATATT
Statistics
Matches: 142, Mismatches: 30, Indels: 24
0.72 0.15 0.12
Matches are distributed among these distances:
24 2 0.01
25 12 0.08
26 53 0.37
27 65 0.46
28 10 0.07
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (27 bp):
TTATATAAGTTATGTAAGTTATATATG
Found at i:167491205 original size:15 final size:15
Alignment explanation
Indices: 167491185--167491240 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
167491175 AAGTAGCGGG
167491185 ATTAAATAATATTTA
1 ATTAAATAATATTTA
167491200 ATTAAATAATATTT-
1 ATTAAATAATATTTA
167491214 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
167491229 ATTAAATAATAT
1 ATTAAATAATAT
167491241 ACATGTCGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.44
16 6 0.17
17 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:167491449 original size:24 final size:23
Alignment explanation
Indices: 167491417--167491466 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 23
167491407 ACTTAAATGG
*
167491417 TAAAACGGACGATAATATTTCTAA
1 TAAAACGGACGAGAATATTTC-AA
167491441 TAAAACGGACGAGAATATTTCAA
1 TAAAACGGACGAGAATATTTCAA
167491464 TAA
1 TAA
167491467 TAATTTAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 5 0.20
24 20 0.80
ACGTcount: A:0.48, C:0.12, G:0.14, T:0.26
Consensus pattern (23 bp):
TAAAACGGACGAGAATATTTCAA
Found at i:167492229 original size:370 final size:371
Alignment explanation
Indices: 167491548--167492828 Score: 2503
Period size: 371 Copynumber: 3.5 Consensus size: 371
167491538 AATTGAAACA
167491548 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
167491613 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
*
167491678 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAATTATAATTTTTAAA
131 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAATTATAACTTTTAAA
167491743 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATAT
196 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATAT
* *
167491808 AATAATATAAAAAAGAATCATAGTTTAATTTTTATAAGCAAATTGGAAATAAATTAAGGTTATAT
261 AATAATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATAT
167491873 AAATATTCAATAGTAAATGAGCTCGATACAAC-TTTTTCAAGTCTT
326 AAATATTCAATAGTAAATGAGCTCGATACAACTTTTTTCAAGTCTT
167491918 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
167491983 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
167492048 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAATTATAA-TTTTAAA
131 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAATTATAACTTTTAAA
167492112 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
196 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATAT-AAAAAATAGTAATTTGAATA
167492177 TAATAATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
260 TAATAATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
167492242 TAAATATTCAATAGTAAATGAGCTCGATACAACTTTTTTCAAGTCTT
325 TAAATATTCAATAGTAAATGAGCTCGATACAACTTTTTTCAAGTCTT
167492289 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
167492354 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
167492419 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAATTATAACTTTTAAA
131 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAATTATAACTTTTAAA
167492484 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATAT
196 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATAT
167492549 AATAATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATAT
261 AATAATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATAT
167492614 AAATATTCAATAGTAAATGAGCTCGATACAACTTTTTTCAAGTCTT
326 AAATATTCAATAGTAAATGAGCTCGATACAACTTTTTTCAAGTCTT
167492660 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
167492725 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
*
167492790 AATAAGGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTT
131 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTT
167492829 AATGGACAAG
Statistics
Matches: 905, Mismatches: 3, Indels: 5
0.99 0.00 0.01
Matches are distributed among these distances:
369 51 0.06
370 303 0.33
371 500 0.55
372 51 0.06
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.36
Consensus pattern (371 bp):
TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAATTATAACTTTTAAA
GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATAT
AATAATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATAT
AAATATTCAATAGTAAATGAGCTCGATACAACTTTTTTCAAGTCTT
Found at i:167493884 original size:21 final size:21
Alignment explanation
Indices: 167493858--167493897 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
167493848 ACACTAATTC
*
167493858 ATACTTAAGTTGAATCAAATA
1 ATACTTAAGTTGAACCAAATA
167493879 ATACTTAAGTTGAACCAAA
1 ATACTTAAGTTGAACCAAA
167493898 ACATAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (21 bp):
ATACTTAAGTTGAACCAAATA
Found at i:167496164 original size:134 final size:134
Alignment explanation
Indices: 167495897--167496171 Score: 471
Period size: 134 Copynumber: 2.1 Consensus size: 134
167495887 GAATTCAACA
167495897 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
* **
167495962 TAAGTTGGATAGAAACATGAAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTT
66 TAAGTTGGATAGAAACATGAAAAACAGACCAAAAGAACATCTAAATAACCAAAATAGAACAACAT
167496027 TATT
131 TATT
167496031 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
* * *
167496096 TAAGTTGGATAGAAACATG-AAAACAGACCAAAATAACATCTAAATAACCAAAATGGAATCACCA
66 TAAGTTGGATAGAAACATGAAAAACAGACCAAAAGAACATCTAAATAACCAAAATAGAA-CAACA
167496160 TTATT
130 TTATT
*
167496165 ATGTAAA
1 ATATAAA
167496172 CATGAAAATG
Statistics
Matches: 133, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
133 36 0.27
134 97 0.73
ACGTcount: A:0.51, C:0.18, G:0.10, T:0.21
Consensus pattern (134 bp):
ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
TAAGTTGGATAGAAACATGAAAAACAGACCAAAAGAACATCTAAATAACCAAAATAGAACAACAT
TATT
Found at i:167499068 original size:13 final size:13
Alignment explanation
Indices: 167499027--167499087 Score: 50
Period size: 14 Copynumber: 4.4 Consensus size: 13
167499017 ACCTCAAACT
* *
167499027 CTAAATCGTAAAC
1 CTAAATCATAACC
*
167499040 ATAAATCATCAACC
1 CTAAATCAT-AACC
167499054 CTAAATCATAACC
1 CTAAATCATAACC
*
167499067 CTTAAACCCATAACCC
1 C-TAAA-TCATAA-CC
167499083 CTAAA
1 CTAAA
167499088 CCTATAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
13 12 0.31
14 15 0.38
15 9 0.23
16 3 0.08
ACGTcount: A:0.46, C:0.31, G:0.02, T:0.21
Consensus pattern (13 bp):
CTAAATCATAACC
Found at i:167499080 original size:15 final size:15
Alignment explanation
Indices: 167499060--167499094 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
167499050 AACCCTAAAT
*
167499060 CATAACCCTTAAACC
1 CATAACCCCTAAACC
167499075 CATAACCCCTAAACC
1 CATAACCCCTAAACC
*
167499090 TATAA
1 CATAA
167499095 AAATATTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (15 bp):
CATAACCCCTAAACC
Found at i:167499711 original size:113 final size:114
Alignment explanation
Indices: 167499528--167499821 Score: 299
Period size: 113 Copynumber: 2.6 Consensus size: 114
167499518 TAGCAATTGC
* * * * * * * *
167499528 GGCGTTTTT-TAAAAAAACGCCGCTAAAGTTTGATCTTTTGCTGCGTTTTTGGGAAAACGCCGCT
1 GGCGTTTTTAT-AAAAAACGCCGCTATAGGTGGACCTATAGCGGCGTTTTT-CGAAAACGCCGCT
* * * *
167499592 ACTGCCAAAGGAGCACATATAAAACGACGTCG-TTTTCCTTAACATTTTAGT
64 AATGCCAAAGAAGCACATAGAAAACGACATCGTTTTTCC-TAACATTTTAGT
* * ** *
167499643 GGCGTTTTT-TCACAAACGCCGCTATAGGT-TTCCTTTAGCGGCGTTTTCTCGAAAACGCCGCTA
1 GGCGTTTTTATAAAAAACGCCGCTATAGGTGGACCTATAGCGGCGTTTT-TCGAAAACGCCGCTA
** * *
167499706 ATGCCAATTAAGCTCATAGAAAATGACATCGTTTTTCCTAACATTTTAGT
65 ATGCCAAAGAAGCACATAGAAAACGACATCGTTTTTCCTAACATTTTAGT
* * *
167499756 GGCGTTTTTATAAAAAACGCCTCTATAGGTGGACCTATAGCGGCGTTTTTGGAAAAACGCCACTA
1 GGCGTTTTTATAAAAAACGCCGCTATAGGTGGACCTATAGCGGCGTTTTTCG-AAAACGCCGCTA
167499821 A
65 A
167499822 AATGTTAAGC
Statistics
Matches: 148, Mismatches: 26, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
113 70 0.47
114 41 0.28
115 37 0.25
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (114 bp):
GGCGTTTTTATAAAAAACGCCGCTATAGGTGGACCTATAGCGGCGTTTTTCGAAAACGCCGCTAA
TGCCAAAGAAGCACATAGAAAACGACATCGTTTTTCCTAACATTTTAGT
Found at i:167499830 original size:113 final size:110
Alignment explanation
Indices: 167499607--167499891 Score: 274
Period size: 113 Copynumber: 2.5 Consensus size: 110
167499597 CAAAGGAGCA
* * * *
167499607 CATATAAAACGACGTCGTTTTCCTTAACATTTTAGTGGCGTTTTTTCACAAACGCCGCTATAGGT
1 CATAGAAAACGACATCGTTTTCCTTAACATTTTAGTGGCGTTTTTTAAAAAACGCCGCTATAGGT
** * *
167499672 TTCCTTTAGCGGCGTTTTCTCGAAAACGCCGCTAATGCCAATTAAGCT
66 GACCTATAGCGGCGTTTTCTCGAAAACGCCACTAATG---ATTAAGCT
* *
167499720 CATAGAAAATGACATCGTTTTTCC-TAACATTTTAGTGGCGTTTTTATAAAAAACGCCTCTATAG
1 CATAGAAAACGACATCG-TTTTCCTTAACATTTTAGTGGCGTTTTT-TAAAAAACGCCGCTATAG
*
167499784 GTGGACCTATAGCGGCGTTTT-TGGAAAAACGCCACTAAAATG-TTAAGCT
64 GT-GACCTATAGCGGCGTTTTCTCG-AAAACGCCACT--AATGATTAAGCT
* * ** * * * *
167499833 CAT-GTGAAACGACGTCGTTTTGATTAAC-CTTTAGCGGCGCTTTTAAAAAAACGCCGCTA
1 CATAG-AAAACGACATCGTTTTCCTTAACATTTTAGTGGCGTTTTTTAAAAAACGCCGCTA
167499892 AAGGCCGACT
Statistics
Matches: 143, Mismatches: 21, Indels: 18
0.79 0.12 0.10
Matches are distributed among these distances:
111 13 0.09
112 18 0.13
113 58 0.41
114 25 0.17
115 25 0.17
117 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (110 bp):
CATAGAAAACGACATCGTTTTCCTTAACATTTTAGTGGCGTTTTTTAAAAAACGCCGCTATAGGT
GACCTATAGCGGCGTTTTCTCGAAAACGCCACTAATGATTAAGCT
Found at i:167499974 original size:40 final size:41
Alignment explanation
Indices: 167499866--167499963 Score: 135
Period size: 41 Copynumber: 2.4 Consensus size: 41
167499856 TTAACCTTTA
* *
167499866 GCGGCGC-TTTTAAAAAAACGCCGCTAAAGGCCGACTTATG
1 GCGGCGCTTTTTCAAAAAACGCCGCTAAAGGCCGACCTATG
* *
167499906 GCGGCGCTTTTTCAAAAAACGCCGCTAAAGGTCGACCTATT
1 GCGGCGCTTTTTCAAAAAACGCCGCTAAAGGCCGACCTATG
* *
167499947 GCGGCGTTTTTTTAAAA
1 GCGGCGCTTTTTCAAAA
167499964 GCGTCGCTAA
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 7 0.14
41 44 0.86
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (41 bp):
GCGGCGCTTTTTCAAAAAACGCCGCTAAAGGCCGACCTATG
Found at i:167505570 original size:2 final size:2
Alignment explanation
Indices: 167505563--167505648 Score: 70
Period size: 2 Copynumber: 44.0 Consensus size: 2
167505553 ATATTTGATC
* * * *
167505563 TA TA TA TA TA TA TA TA TA T- TA T- TA AA TC TA TG TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
167505603 CA TA TA GT- TT TC TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
167505645 TA TA
1 TA TA
167505649 AAAGCATGTT
Statistics
Matches: 67, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
1 3 0.04
2 63 0.94
3 1 0.01
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.52
Consensus pattern (2 bp):
TA
Found at i:167505808 original size:3 final size:3
Alignment explanation
Indices: 167505800--167505856 Score: 105
Period size: 3 Copynumber: 19.0 Consensus size: 3
167505790 TTTTATTACA
*
167505800 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
167505848 TAT TAT TAT
1 TAT TAT TAT
167505857 CTTATACATA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:167506709 original size:16 final size:17
Alignment explanation
Indices: 167506678--167506711 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
167506668 GATAAAAAAT
*
167506678 GAATACTACGATATAAA
1 GAATAATACGATATAAA
167506695 GAATAATAC-ATATAAA
1 GAATAATACGATATAAA
167506711 G
1 G
167506712 CAAAAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.56, C:0.09, G:0.12, T:0.24
Consensus pattern (17 bp):
GAATAATACGATATAAA
Found at i:167507366 original size:43 final size:43
Alignment explanation
Indices: 167507284--167507381 Score: 114
Period size: 42 Copynumber: 2.3 Consensus size: 43
167507274 TATACATAAC
167507284 ATATATATAAAAAAAGTAATATAAAAATAAAACATAATAA-AG
1 ATATATATAAAAAAAGTAATATAAAAATAAAACATAATAATAG
*
167507326 AT-TATATAATAAAATGTAATATAAACATATAAGAA-A-AATAATAG
1 ATATATATAA-AAAAAGTAATATAAA-A-ATAA-AACATAATAATAG
167507370 ATATAATATAAA
1 ATAT-ATATAAA
167507382 GTAACATATA
Statistics
Matches: 48, Mismatches: 1, Indels: 11
0.80 0.02 0.18
Matches are distributed among these distances:
41 7 0.15
42 16 0.33
43 6 0.12
44 9 0.19
45 4 0.08
46 6 0.12
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (43 bp):
ATATATATAAAAAAAGTAATATAAAAATAAAACATAATAATAG
Found at i:167507388 original size:35 final size:32
Alignment explanation
Indices: 167507349--167507412 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 32
167507339 ATGTAATATA
167507349 AACATATAAGAAAAATAATAGATATAATATAAAGT
1 AACATATAA-AAAAAT-ATAGATATAA-ATAAAGT
* *
167507384 AACATATAAAACAATATATATATAAATAA
1 AACATATAAAAAAATATAGATATAAATAA
167507413 TTAATAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 4 0.15
33 9 0.33
34 5 0.19
35 9 0.33
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.27
Consensus pattern (32 bp):
AACATATAAAAAAATATAGATATAAATAAAGT
Found at i:167507486 original size:3 final size:3
Alignment explanation
Indices: 167507480--167507538 Score: 50
Period size: 3 Copynumber: 19.0 Consensus size: 3
167507470 ATTTAAGAAA
* *
167507480 AAT AAT ACAT AAT AAGT AAT AAT AAT ATAT AATT AA- AAT AAT ACT TAT
1 AAT AAT A-AT AAT AA-T AAT AAT AAT A-AT AA-T AAT AAT AAT AAT AAT
167507528 AAT AA- AAT AAT
1 AAT AAT AAT AAT
167507539 TTTATAATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
2 4 0.09
3 30 0.65
4 12 0.26
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:167507493 original size:7 final size:6
Alignment explanation
Indices: 167507480--167507538 Score: 50
Period size: 7 Copynumber: 9.5 Consensus size: 6
167507470 ATTTAAGAAA
* *
167507480 AATAAT ACATAAT AAGTAAT AATAAT ATATAATT AA-AAT AATACT TATAAT
1 AATAAT A-ATAAT AA-TAAT AATAAT A-ATAA-T AATAAT AATAAT AATAAT
167507531 AA-AAT AAT
1 AATAAT AAT
167507539 TTTATAATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
5 8 0.19
6 16 0.37
7 17 0.40
8 2 0.05
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (6 bp):
AATAAT
Found at i:167507506 original size:36 final size:34
Alignment explanation
Indices: 167507460--167507542 Score: 98
Period size: 36 Copynumber: 2.4 Consensus size: 34
167507450 TAAAAGAGAT
167507460 GTAAAATAATATTTAAGAAAAATAATACATAATAA
1 GTAAAATAATATTTAAGAAAAATAATAC-TAATAA
* ** *
167507495 GTAATAATAATATATAATTAAAATAATACTTATAA
1 GTAA-AATAATATTTAAGAAAAATAATACTAATAA
167507530 -TAAAATAAT-TTTA
1 GTAAAATAATATTTA
167507543 TAATATATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
32 3 0.07
33 6 0.14
34 3 0.07
35 9 0.21
36 21 0.50
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (34 bp):
GTAAAATAATATTTAAGAAAAATAATACTAATAA
Found at i:167507521 original size:16 final size:16
Alignment explanation
Indices: 167507460--167507538 Score: 70
Period size: 16 Copynumber: 4.6 Consensus size: 16
167507450 TAAAAGAGAT
*
167507460 GTAAAATAATATTTAA
1 GTAAAATAATATATAA
*
167507476 GAAAAATAATACATAATAA
1 GTAAAATAAT--AT-ATAA
167507495 GTAATAATAATATATAA
1 GTAA-AATAATATATAA
*
167507512 TTAAAATAATACTTATAA
1 GTAAAATAATA--TATAA
167507530 -TAAAATAAT
1 GTAAAATAAT
167507539 TTTATAATAT
Statistics
Matches: 53, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
16 16 0.30
17 16 0.30
18 9 0.17
19 6 0.11
20 6 0.11
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.33
Consensus pattern (16 bp):
GTAAAATAATATATAA
Found at i:167507545 original size:16 final size:17
Alignment explanation
Indices: 167507461--167507547 Score: 67
Period size: 16 Copynumber: 5.1 Consensus size: 17
167507451 AAAAGAGATG
167507461 TAAAATAATA-TT-TAA
1 TAAAATAATACTTATAA
*
167507476 GAAAAATAATAC--ATAA
1 -TAAAATAATACTTATAA
*
167507492 TAAGTAATAATAATATATAA
1 TAA--AATAATACT-TATAA
167507512 TTAAAATAATACTTATAA
1 -TAAAATAATACTTATAA
*
167507530 TAAAATAAT-TTTATAA
1 TAAAATAATACTTATAA
167507546 TA
1 TA
167507548 TATAATATAA
Statistics
Matches: 58, Mismatches: 5, Indels: 16
0.73 0.06 0.20
Matches are distributed among these distances:
15 2 0.03
16 20 0.34
17 16 0.28
18 5 0.09
19 8 0.14
20 4 0.07
21 3 0.05
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (17 bp):
TAAAATAATACTTATAA
Found at i:167509205 original size:26 final size:26
Alignment explanation
Indices: 167509168--167509303 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
167509158 TGATACAAAT
* *
167509168 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
167509194 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
167509220 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
167509246 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
167509272 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
167509298 TGATAA
1 TGATAA
167509304 GAATTCATGT
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:167510815 original size:25 final size:27
Alignment explanation
Indices: 167510773--167510825 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
167510763 AATTACTGTT
167510773 TACCCCTAGGTGCAAAATT-ACCGAAA
1 TACCCCTAGGTGCAAAATTGACCGAAA
** *
167510799 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGTGCAAAATTGACCGAAA
167510825 T
1 T
167510826 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.25
Consensus pattern (27 bp):
TACCCCTAGGTGCAAAATTGACCGAAA
Found at i:167511318 original size:137 final size:137
Alignment explanation
Indices: 167511072--167511358 Score: 556
Period size: 137 Copynumber: 2.1 Consensus size: 137
167511062 GAGTAGTCTC
167511072 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
167511137 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
167511202 ACTGTTA
131 ACTGTTA
167511209 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
167511274 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
167511339 ACTGTTA
131 ACTGTTA
**
167511346 CCTGAATGGGCTT
1 CCCAAATGGGCTT
167511359 AGGCCCAATA
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 148 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:167515073 original size:26 final size:26
Alignment explanation
Indices: 167515036--167515171 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
167515026 TGATACAAAT
* *
167515036 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
167515062 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
167515088 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
167515114 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
167515140 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
167515166 TGATAA
1 TGATAA
167515172 GAATTCATGT
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:167516682 original size:25 final size:26
Alignment explanation
Indices: 167516641--167516692 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
167516631 ATTTACAGTT
167516641 TACCCCTAGGTGAAAATT-ACCGAAA
1 TACCCCTAGGTGAAAATTGACCGAAA
* *
167516666 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGTG-AAAATTGACCGAAA
167516692 T
1 T
167516693 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 1 0.04
25 15 0.65
26 7 0.30
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGTGAAAATTGACCGAAA
Found at i:167517186 original size:137 final size:137
Alignment explanation
Indices: 167516940--167517226 Score: 556
Period size: 137 Copynumber: 2.1 Consensus size: 137
167516930 GAGTAGTCTC
167516940 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
167517005 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
167517070 ACTGTTA
131 ACTGTTA
167517077 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
167517142 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
167517207 ACTGTTA
131 ACTGTTA
**
167517214 CCTGAATGGGCTT
1 CCCAAATGGGCTT
167517227 AGGCCCAATA
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 148 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:167518563 original size:131 final size:131
Alignment explanation
Indices: 167518397--167518701 Score: 371
Period size: 131 Copynumber: 2.3 Consensus size: 131
167518387 TCTTTAAGTG
* * * * * *
167518397 AAGGCGATGTTCGATATTTGGCAATTCGCGAAATCGTACCCTATCGTGCTAGGTTGCGATTTCCC
1 AAGGCAATGTTTGATGTTTGGCAATTCGAGGAATCGTGCCCTATCGTGCTAGGTTGCGATTTCCC
* * *
167518462 GTTCCTTCAAAACAATCGAATAT-TCCTATGGAATTTCACCCATGTCT-TTAAAGATTCTATAAA
66 GTTCCTTCAAAACAATCGAATATCCCCTATAGAATTTCACCCATGTCTCTTAAAAATTCTA-AAA
167518525 AC
130 AC
* * * *
167518527 GAAGGTAATGTTTGATGTTTGGCAATTCGGGGAATCGTGCCCTATTGTGCTGGGTTGCGATTTCC
1 -AAGGCAATGTTTGATGTTTGGCAATTCGAGGAATCGTGCCCTATCGTGCTAGGTTGCGATTTCC
* ** * * * *
167518592 TGTTGGTTCAAAATAATCGAATATCCCCTTTAGAATTTCACTCATGTTTCTTAAAAATTCTAAAA
65 CGTTCCTTCAAAACAATCGAATATCCCCTATAGAATTTCACCCATGTCTCTTAAAAATTCTAAAA
167518657 AC
130 AC
* * *
167518659 AAGGCAATGCTTGATGTTTAGAAATTCGAGGAATCGTGCCCTA
1 AAGGCAATGTTTGATGTTTGGCAATTCGAGGAATCGTGCCCTA
167518702 CTGTGCTGGG
Statistics
Matches: 148, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
131 113 0.76
132 24 0.16
133 11 0.07
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (131 bp):
AAGGCAATGTTTGATGTTTGGCAATTCGAGGAATCGTGCCCTATCGTGCTAGGTTGCGATTTCCC
GTTCCTTCAAAACAATCGAATATCCCCTATAGAATTTCACCCATGTCTCTTAAAAATTCTAAAAA
C
Found at i:167519482 original size:26 final size:26
Alignment explanation
Indices: 167519446--167519499 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
167519436 ATTAAAGAAG
*
167519446 TCAGAAGTGATGTCATGTCAACTTTA
1 TCAGAAGTGATGTCATCTCAACTTTA
167519472 TCAGAAGTGATGTCATCTCAACTTTA
1 TCAGAAGTGATGTCATCTCAACTTTA
167519498 TC
1 TC
167519500 GTTTTTAGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35
Consensus pattern (26 bp):
TCAGAAGTGATGTCATCTCAACTTTA
Found at i:167520016 original size:23 final size:24
Alignment explanation
Indices: 167519990--167520035 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
167519980 GTTGTAGCAA
167519990 TCAAACATTGATAA-TAAATTATG
1 TCAAACATTGATAACTAAATTATG
*
167520013 TCAAACATTGATAACTAACTTAT
1 TCAAACATTGATAACTAAATTAT
167520036 TGCTCACATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.46, C:0.13, G:0.07, T:0.35
Consensus pattern (24 bp):
TCAAACATTGATAACTAAATTATG
Found at i:167523801 original size:32 final size:32
Alignment explanation
Indices: 167523765--167523829 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
167523755 TGTATGCATT
167523765 TTAGCATTTTAATAGTTAATGAATGATGGGCA
1 TTAGCATTTTAATAGTTAATGAATGATGGGCA
*
167523797 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGAATGATGGGCA
167523829 T
1 T
167523830 GATAAGCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGAATGATGGGCA
Found at i:167525884 original size:135 final size:135
Alignment explanation
Indices: 167525608--167525889 Score: 523
Period size: 134 Copynumber: 2.1 Consensus size: 135
167525598 AGTAGTCTCC
167525608 CCAAATGGGCTTGCATATGTTTACTATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTG
1 CCAAATGGGCTTGCATATGTTTACTATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTG
*
167525673 TTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
66 TTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACCAC
167525738 TGTTA
131 TGTTA
167525743 CCAAATGGGCTTGCATATGTTT-CTGATGTTGCATGTATTTTGAAATGGGCCTATGGG-CATACT
1 CCAAATGGGCTTGCATATGTTTACT-ATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
167525806 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACCA
65 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACCA
167525871 CTGTTA
130 CTGTTA
167525877 CCTAAATGGGCTT
1 CC-AAATGGGCTT
167525890 AGGCCCAATG
Statistics
Matches: 144, Mismatches: 1, Indels: 4
0.97 0.01 0.03
Matches are distributed among these distances:
134 80 0.56
135 64 0.44
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.32
Consensus pattern (135 bp):
CCAAATGGGCTTGCATATGTTTACTATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTG
TTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACCAC
TGTTA
Found at i:167528427 original size:21 final size:22
Alignment explanation
Indices: 167528387--167528427 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
167528377 AGAAACCCAA
*
167528387 CCATATCCAACCGTATACACCC
1 CCATATCCAACCGTACACACCC
*
167528409 CCATA-CCAACCTTACACAC
1 CCATATCCAACCGTACACAC
167528428 GTGTGGGGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.34, C:0.46, G:0.02, T:0.17
Consensus pattern (22 bp):
CCATATCCAACCGTACACACCC
Found at i:167530496 original size:23 final size:24
Alignment explanation
Indices: 167530407--167530512 Score: 178
Period size: 24 Copynumber: 4.4 Consensus size: 24
167530397 CTGGAGGCCT
*
167530407 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
167530432 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
167530456 AGCCCTTTTGAATAACTGGGGCATA
1 AGCCCTTTT-AATAACTGGGGCATA
167530481 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
167530504 AGCCCTTTT
1 AGCCCTTTT
167530513 TCACTTCCTC
Statistics
Matches: 78, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
23 20 0.26
24 34 0.44
25 24 0.31
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:167530581 original size:9 final size:9
Alignment explanation
Indices: 167530567--167530617 Score: 57
Period size: 9 Copynumber: 5.4 Consensus size: 9
167530557 ACATCATGTG
167530567 CATATCATA
1 CATATCATA
*
167530576 CATATCATGTG
1 CATATCA--TA
167530587 CATATCATA
1 CATATCATA
* *
167530596 CATGTCATG
1 CATATCATA
167530605 CATATCATA
1 CATATCATA
167530614 CATA
1 CATA
167530618 CCATGTTTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
9 26 0.76
11 8 0.24
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.33
Consensus pattern (9 bp):
CATATCATA
Found at i:167530584 original size:20 final size:20
Alignment explanation
Indices: 167530559--167530623 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
167530549 TTATGATTAC
167530559 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
167530579 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
167530599 GTCA--TGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
167530617 ACCATGT
1 ATCATGT
167530624 TTATCAAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
18 16 0.40
20 24 0.60
ACGTcount: A:0.34, C:0.22, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:167530622 original size:18 final size:18
Alignment explanation
Indices: 167530565--167530622 Score: 80
Period size: 18 Copynumber: 3.1 Consensus size: 18
167530555 TTACATCATG
167530565 TGCATATCATACATATCA
1 TGCATATCATACATATCA
*
167530583 TGTGCATATCATACATGTCA
1 --TGCATATCATACATATCA
*
167530603 TGCATATCATACATACCA
1 TGCATATCATACATATCA
167530621 TG
1 TG
167530623 TTTATCAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
18 18 0.51
20 17 0.49
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.33
Consensus pattern (18 bp):
TGCATATCATACATATCA
Found at i:167530628 original size:18 final size:18
Alignment explanation
Indices: 167530568--167530629 Score: 70
Period size: 18 Copynumber: 3.3 Consensus size: 18
167530558 CATCATGTGC
167530568 ATATCATACATATCATGT
1 ATATCATACATATCATGT
* *
167530586 GCATATCATACATGTCATGC
1 --ATATCATACATATCATGT
*
167530606 ATATCATACATACCATGT
1 ATATCATACATATCATGT
*
167530624 TTATCA
1 ATATCA
167530630 AAATCCCATG
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
18 20 0.56
20 16 0.44
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.35
Consensus pattern (18 bp):
ATATCATACATATCATGT
Found at i:167530692 original size:25 final size:25
Alignment explanation
Indices: 167530660--167530707 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
167530650 ATACATAAAC
* * *
167530660 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
167530685 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
167530708 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:167535984 original size:533 final size:540
Alignment explanation
Indices: 167533115--167540131 Score: 12482
Period size: 534 Copynumber: 13.1 Consensus size: 540
167533105 GTGCTACATT
* * **
167533115 CTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAATTTTTTTCTTTTAT
1 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA-ATTTGGCTTTTAT
* *
167533180 TTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTTCCC
65 TTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTA-ATTTTTGCCC
*
167533245 CTAAATTTTATCACATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTT
129 CTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTT
*
167533310 CAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACT
194 CACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACT
* *
167533375 TTTATGA-AAAATTTATAAGTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTA
259 TTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTA
167533439 GCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATAC-CAAATT
324 GCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATT
167533503 TATAACATGGTT-AAACCCTA-ACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCA
389 TATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCA
167533566 TGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAG
454 TGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAG
167533631 CTTGGAAAGCTTAAAC-AAACC
519 CTTGGAAAGCTTAAACAAAACC
*
167533652 CTAGCCATGGTGGTCTTCAAAATTTCGGCC-AGGGGTTGAAGATGACCAAAATTTTGC-TTTATT
1 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
167533715 TTGTTTATTTAAACA-TTAATTACTAAATTTTATCATACTATGGC-AAAATTACATTTTTGCCCC
66 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTA-ATTTTTGCCCC
*
167533778 TAAATTTTATCAT-TTTACACTTTTGCCCTAGGCTT-T-AAATAATTTTCATTCAA-TTATTTTC
130 TAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTC
167533839 AC-TTAAG-CTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC-T
195 ACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTT
167533901 TTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAG
260 TTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAG
167533966 CAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA-CATTAAACATCAAAATACACAAATTT
325 CAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTT
167534030 ATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCAT
390 ATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCAT
* *
167534095 GTTACAAGGATTTC--AAATGTGAAAATCATTAAAAAC--GGCAAGAACGAACTTACTATGGAGC
455 GTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGC
167534156 TTGGAAAGCTTAAACAAAACC
520 TTGGAAAGCTTAAACAAAACC
* **
167534177 CTAGCCATGGTGGTCTTCAAAATTTCGGCC-AAGGGTTGAAGATGACCAAAATTTTTCTTTTATT
1 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
167534241 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAATTTTTGCCCCT
66 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAATTTTTGCCCCT
*
167534306 AAATTTTATCAT-TTTACACTTTTGCCCTAGGCTT-TAAAATAATTTTCATTCAATTTATTTTCA
131 AAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCA
*
167534369 CCTTAAGCC--G-C-AACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTT
196 CTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTT
167534430 TATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGC
261 TATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGC
*
167534495 AAAAGTTGTTTCTCTAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTA
326 AAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTA
* *
167534560 TAACATGGTTCAAACCCTAGACCTTCATCATAAGTCAAATAAATGGTAGAAAGAGGTAGATCATG
391 TAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATG
* * *
167534625 TTACAAGGATTTCAAGAATGTGAAAATCATTAAAAACGGGGCAAGAACGAACTTACTATGGAGCT
456 TTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCT
167534690 TGGAAAGCTTAAACAAAACC
521 TGGAAAGCTTAAACAAAACC
167534710 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
1 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
167534775 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAAATTTTTG-CCC
66 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATT-AATTTTTGCCCC
167534839 TAAATTTTATC--ATTTACACTTTTA--CTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTC
130 TAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTC
167534900 AC-TTAAGCCTAGCCGAACCACTTTCATAACTATAAAAA-CCACAATTTCCACTAAATCACACTT
195 ACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTT
167534963 TTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAG
260 TTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAG
167535028 CAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTT
325 CAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTT
167535093 ATAACAT-GTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCAT
390 ATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCAT
*
167535157 G-TACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACAGACTTACTAT-GAGC
455 GTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGC
167535220 TTGGAAAGCTTAAA-AAAACC
520 TTGGAAAGCTTAAACAAAACC
*
167535240 CTAGCCATGGTGGTCTTCAAAATTTCGGCC-AGGGGTTGAAGATGACCAAAATTTTGCTTTT-TT
1 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
167535303 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCC
66 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTA-ATTTTTGCCCC
* *
167535368 TAAATTTTATCAT-TTTACACTTTTGCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTC
130 TAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTC
167535432 AC-TTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC-T
195 ACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTT
*
167535495 TTATGACAAA-TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCACTGAAAATCACTTAG
260 TTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAG
167535559 CAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTT
325 CAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTT
*
167535624 ATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCAT
390 ATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCAT
167535689 GTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGC
455 GTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGC
167535754 TTGGAAAGCTTAAACAAAACC
520 TTGGAAAGCTTAAACAAAACC
167535775 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTA-T
1 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
167535839 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGG-AAAAATTAA-TTTTGCCCCT
66 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAATTTTTGCCCCT
*
167535902 AAATTTTATCTTATTTACACTTTTACCCTAGGCTT-TAAAATAATTTTCATTCAATTTATTTTCA
131 AAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCA
167535966 CTTTAAGCCTAG-CGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTT
196 CTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTT
167536030 TATGACAAA-TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGC
261 TATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGC
*
167536094 AAAAGTTGTTTCTCTAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTA
326 AAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTA
167536159 T-A-AT-GTT-AAACCCTAGACC-TCATCATAACTCAAATAAATGGTAGAAATA--TAGATCATG
391 TAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATG
167536217 TTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAAAC-GACTTACTAT-GAGC
456 TTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAG-AACGGACTTACTATGGAGC
*
167536280 TTGGAAAGCTTAAAAAAAAACC
520 TTGGAAAGCTT-AAACAAAACC
167536302 CTAGCCATGGTGGTCTTCAAAATTTCGGCC-A-GGGTTGAAGATGACCAAAATTTGGCTTTTATT
1 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
*
167536365 TTGTTTATTT-AACA-TTAATTACTAAATTTT-TCATACTATGGCAAAAATTAAATTTTGCCCCT
66 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAATTTTTGCCCCT
*
167536427 AAATTTTATCTTATTTACACTTTTA-CCTAGG-TTGTAAAATAATTTTCATTCAATTTATTTTCA
131 AAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCA
167536490 CTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTT
196 CTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTT
167536555 TATGACAAA-TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGC
261 TATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGC
167536619 AAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTA
326 AAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTA
167536684 TAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATG
391 TAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATG
167536749 TTACAAGGATTTCAAAAAC-TGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCT
456 TTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCT
*
167536813 TGGAAAGCTTAAAAAAAACC
521 TGGAAAGCTTAAACAAAACC
167536833 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
1 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
167536898 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCC
66 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTA-ATTTTTGCCCC
* *
167536963 TAAATTTTATCAT-TTTACACTTTTGCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTC
130 TAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTC
*
167537027 ACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTT
195 ACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTT
167537092 TTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCACTTAGCAAAAGTTGT
260 TTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCA-TT-G-AAAA-----
167537157 TTCAACCATAAACATAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA-CATTAAACA
317 -TC-A-C-T-----TAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACA
167537221 TCAAAATACACAAATTTATAACAT-GTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGT
373 TCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGT
167537285 AGAAATAGGTAGATCATGTTACAAGGATTTCAAAAA-GTGAAAATCATTAAAAACGGGGCAAGAA
438 AGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAA
167537349 C-GACTTACTATGGAGCTTGGAAAGCTTAAACAAAACC
503 CGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACC
167537386 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
1 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
167537451 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAATTTTTGCCCCT
66 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAATTTTTGCCCCT
167537516 AAATTTTATC-TATTTACACTTTTA--CTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCA
131 AAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCA
*
167537578 CCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTT
196 CTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTT
167537643 TATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGC
261 TATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGC
167537707 AAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTA
326 AAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTA
167537772 TAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATG
391 TAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATG
*
167537837 TTACAAGGATTTC-AAAATGTGAAAATCATTAAAAACGGGGCAAGAAC-GACTTACTATGGAGCT
456 TTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCT
167537900 TGGAAAGCTTAAACAAAACC
521 TGGAAAGCTTAAACAAAACC
167537920 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
1 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
167537985 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAATTTTTGCCCCT
66 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAATTTTTGCCCCT
167538050 AAATTTTATCATTATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTC
131 AAATTTTATCA-TATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTC
167538115 ACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTT
195 ACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTT
167538180 TTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAG
260 TTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAG
167538245 CAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTT
325 CAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTT
167538310 ATAACAT-GTTCAAACCCTAGACC-TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCAT
390 ATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCAT
167538373 GTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGC
455 GTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGC
167538438 TTGGAAAGCTTAAACAAAACC
520 TTGGAAAGCTTAAACAAAACC
167538459 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT-GCTTTTATT
1 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
167538523 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTG-CCC
66 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTA-ATTTTTGCCCC
* *
167538587 TAAATTTTATCAT-TTTACACTTTTGCCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTT
130 TAAATTTTATCATATTTACACTTTT-ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTT
167538651 CAC-TTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACT
194 CACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACT
167538715 TTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTA
259 TTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTA
*
167538780 GCAAAAGTTGTTTCTCTAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATT
324 GCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATT
167538845 TATAACAT-GTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCA
389 TATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCA
*
167538909 TGTTACAAGGATTTCAAAAATGTGAAAATCATTAAAAACGGGGCAAGAAC-GACTTACT-TGGAG
454 TGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAG
167538972 CTTGGAAAGCTTAAACAAAACC
519 CTTGGAAAGCTTAAACAAAACC
167538994 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGA-GGGTTGAAGATGACCAAAATTTGGCTTTTATT
1 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
167539058 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAATTTTTGCCCC-
66 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAATTTTTGCCCCT
* ** *
167539122 AAATTTTATCTTATTTACACTTTTAAGCAAGG-TTGTAAAATAATTTTCATTCAATTTATTTTCA
131 AAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCA
* *
167539186 CCTTAAGCCTAGCAGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTT
196 CTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTT
167539251 TATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGC
261 TATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGC
*
167539315 AAAAGTTGTTTCTCTAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTA
326 AAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTA
167539380 TAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATG
391 TAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATG
*
167539445 TTACAAGGATTTC-AAAATGTGAAAATCATTAAAAACGGGGCAAGAAC-GACTTACTATGGAGCT
456 TTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCT
167539508 TGGAAAGCTTAAACAAAACC
521 TGGAAAGCTTAAACAAAACC
167539528 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
1 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
* *
167539593 TTGTTTATTTAAACA-TTAATTAC-AAATTTTATCATACTATGGTAAAAATTAAATTTTGCCCCT
66 TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAATTTTTGCCCCT
* *
167539656 AAATTTTATCTTATTTACACTTTTACCCTAGGCTTGTCAAATAATTTTCATTCAATTTATTTTCA
131 AAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCA
*
167539721 CTTTAAGCCGAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTT
196 CTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTT
*
167539786 TATGGCAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGC
261 TATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGC
* *
167539851 AAAAGTTGTTTCTCTAACCATAAACATGCATAATCTACCCTTAAACATCAAAATACACAAATTTA
326 AAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTA
* * *
167539916 TAACATAGTTCAAACCCTAGACCTCCATCATAAGTCAAATAAATGGTAGAAATAGGTAGATCATG
391 TAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATG
* * *
167539981 TTACAAGGATTTCAAAAATGTGAAAATCATTAAAAACGGGGCAAGAACGAACTTACTTTGGAGCT
456 TTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCT
167540046 TGGAAAGCTTAAACAAAACC
521 TGGAAAGCTTAAACAAAACC
*
167540066 CTAGCCATGGTGGTCTTCAAAATTTTGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
1 CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
167540131 T
66 T
167540132 CTGTAACACC
Statistics
Matches: 6289, Mismatches: 80, Indels: 221
0.95 0.01 0.03
Matches are distributed among these distances:
523 13 0.00
524 111 0.02
525 335 0.05
526 236 0.04
527 242 0.04
528 262 0.04
529 216 0.03
530 98 0.02
531 279 0.04
532 343 0.05
533 673 0.11
534 1018 0.16
535 375 0.06
536 571 0.09
537 276 0.04
538 437 0.07
539 268 0.04
540 4 0.00
541 1 0.00
542 4 0.00
546 4 0.00
547 1 0.00
548 4 0.00
549 44 0.01
550 108 0.02
551 2 0.00
552 33 0.01
553 153 0.02
554 104 0.02
555 33 0.01
556 41 0.01
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (540 bp):
CTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATT
TTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAATTTTTGCCCCT
AAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCA
CTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTT
TATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGC
AAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTA
TAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATG
TTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCT
TGGAAAGCTTAAACAAAACC
Found at i:167537182 original size:27 final size:30
Alignment explanation
Indices: 167537144--167537201 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
167537134 CATTTTCACT
167537144 TAGCAAAAGTTG-TT-T-CAACCATAAACA
1 TAGCAAAAGTTGTTTCTCCAACCATAAACA
167537171 TAGCAAAAGTTGTTTCTCCAACCATAAACA
1 TAGCAAAAGTTGTTTCTCCAACCATAAACA
167537201 T
1 T
167537202 GCATAATCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
27 12 0.43
28 2 0.07
29 1 0.04
30 13 0.46
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (30 bp):
TAGCAAAAGTTGTTTCTCCAACCATAAACA
Found at i:167541123 original size:55 final size:56
Alignment explanation
Indices: 167541058--167541172 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
167541048 AGCATGGCTG
* * *
167541058 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
167541114 CCAGA-ACAGATATACGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
167541169 CCAG
1 CCAG
167541173 GAAGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:167541169 original size:28 final size:27
Alignment explanation
Indices: 167541083--167541172 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
167541073 GTGACAGAGT
*
167541083 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
167541112 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
167541139 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
167541167 CACCAG
1 CACCAG
167541173 GAAGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:167541325 original size:28 final size:28
Alignment explanation
Indices: 167541278--167541342 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
167541268 AAATTAACCG
*
167541278 TAGGGGTATAAAGGTCATTTTGT-ACACA
1 TAGGGGTATAAAGGTAATTTT-TCACACA
* *
167541306 TAGGGGTATAATGGTAATTTTTCATACA
1 TAGGGGTATAAAGGTAATTTTTCACACA
167541334 TAGGGGTAT
1 TAGGGGTAT
167541343 TCTAGTAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 1 0.03
28 32 0.97
ACGTcount: A:0.31, C:0.08, G:0.26, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTTCACACA
Found at i:167542369 original size:12 final size:13
Alignment explanation
Indices: 167542350--167542382 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
167542340 AGGTTCGCCT
167542350 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
167542363 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
167542375 ATGGAGAA
1 ATGGAGAA
167542383 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:167544908 original size:24 final size:24
Alignment explanation
Indices: 167544856--167545021 Score: 230
Period size: 24 Copynumber: 7.0 Consensus size: 24
167544846 GCTTTATCAT
*
167544856 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
167544881 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
167544905 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
167544928 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
167544952 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
167544976 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
167544999 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
167545022 GCACTTCCTC
Statistics
Matches: 129, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 43 0.33
24 74 0.57
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:167544932 original size:47 final size:48
Alignment explanation
Indices: 167544855--167545021 Score: 232
Period size: 47 Copynumber: 3.5 Consensus size: 48
167544845 TGCTTTATCA
* *
167544855 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
167544904 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* * *
167544951 GATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
167544998 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
167545022 GCACTTCCTC
Statistics
Matches: 107, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
47 68 0.64
48 26 0.24
49 13 0.12
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:167544956 original size:71 final size:71
Alignment explanation
Indices: 167544856--167545022 Score: 255
Period size: 71 Copynumber: 2.3 Consensus size: 71
167544846 GCTTTATCAT
* * *
167544856 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
167544920 GCCCTTTA
64 GCCCTTTA
* **
167544928 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
167544993 CCTTTA
66 CCTTTA
167544999 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
167545023 CACTTCCTCC
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
71 76 0.86
72 12 0.14
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:167545093 original size:9 final size:9
Alignment explanation
Indices: 167545079--167545135 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
167545069 ATCTCATGTG
167545079 CATATCATA
1 CATATCATA
*
167545088 CATATCATGTG
1 CATATCA--TA
167545099 CATATCATA
1 CATATCATA
* *
167545108 CATGTCATGTG
1 CATATCA--TA
167545119 CATATCATA
1 CATATCATA
167545128 CATATCAT
1 CATATCAT
167545136 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:167545095 original size:20 final size:20
Alignment explanation
Indices: 167545067--167545137 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
167545057 GCATTTATGA
*
167545067 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
167545087 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
167545107 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
167545127 ACATATCATGT
1 ACATATCATGT
167545138 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:167545102 original size:11 final size:11
Alignment explanation
Indices: 167545072--167545126 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
167545062 TATGAACATC
167545072 TCATGTGCATA
1 TCATGTGCATA
*
167545083 TCA--TACATA
1 TCATGTGCATA
167545092 TCATGTGCATA
1 TCATGTGCATA
* *
167545103 TCA--TACATG
1 TCATGTGCATA
167545112 TCATGTGCATA
1 TCATGTGCATA
167545123 TCAT
1 TCAT
167545127 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:167545216 original size:25 final size:24
Alignment explanation
Indices: 167545174--167545221 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
167545164 ATATATAAAC
* * *
167545174 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAACGGTCA-TTTTA
167545199 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
167545222 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:167548826 original size:24 final size:24
Alignment explanation
Indices: 167548774--167548939 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
167548764 GCTTTATCAT
*
167548774 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
167548799 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
167548823 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
167548846 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
167548870 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
167548894 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
167548917 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
167548940 GCACTTCCTC
Statistics
Matches: 129, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 43 0.33
24 74 0.57
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:167548850 original size:47 final size:48
Alignment explanation
Indices: 167548773--167548939 Score: 241
Period size: 47 Copynumber: 3.5 Consensus size: 48
167548763 TGCTTTATCA
* *
167548773 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
167548822 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
167548869 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
167548916 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
167548940 GCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 70 0.64
48 26 0.24
49 13 0.12
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:167548874 original size:71 final size:71
Alignment explanation
Indices: 167548774--167548940 Score: 264
Period size: 71 Copynumber: 2.3 Consensus size: 71
167548764 GCTTTATCAT
* * *
167548774 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
167548838 GCCCTTTA
64 GCCCTTTA
* *
167548846 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
167548911 CCTTTA
66 CCTTTA
167548917 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
167548941 CACTTCCTCC
Statistics
Matches: 89, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
71 77 0.87
72 12 0.13
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:167549011 original size:9 final size:9
Alignment explanation
Indices: 167548997--167549053 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
167548987 ATCTCATGTG
167548997 CATATCATA
1 CATATCATA
*
167549006 CATATCATGTG
1 CATATCA--TA
167549017 CATATCATA
1 CATATCATA
* *
167549026 CATGTCATGTG
1 CATATCA--TA
167549037 CATATCATA
1 CATATCATA
167549046 CATATCAT
1 CATATCAT
167549054 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:167549013 original size:20 final size:20
Alignment explanation
Indices: 167548985--167549055 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
167548975 GCATTTATGA
*
167548985 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
167549005 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
167549025 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
167549045 ACATATCATGT
1 ACATATCATGT
167549056 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Done.