Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 539 of 770
Found at i:167549020 original size:11 final size:11
Alignment explanation
Indices: 167548990--167549044 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
167548980 TATGAACATC
167548990 TCATGTGCATA
1 TCATGTGCATA
*
167549001 TCA--TACATA
1 TCATGTGCATA
167549010 TCATGTGCATA
1 TCATGTGCATA
* *
167549021 TCA--TACATG
1 TCATGTGCATA
167549030 TCATGTGCATA
1 TCATGTGCATA
167549041 TCAT
1 TCAT
167549045 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:167549133 original size:24 final size:24
Alignment explanation
Indices: 167549092--167549138 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
167549082 ATATATAAAC
* * *
167549092 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAACGGTCATTTTA
167549116 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
167549139 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:167552744 original size:24 final size:24
Alignment explanation
Indices: 167552692--167552857 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
167552682 GCTTTATCAT
*
167552692 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
167552717 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
167552741 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
167552764 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
167552788 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
167552812 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
167552835 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
167552858 GCACTTCCTC
Statistics
Matches: 129, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 43 0.33
24 74 0.57
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:167552768 original size:47 final size:48
Alignment explanation
Indices: 167552691--167552857 Score: 241
Period size: 47 Copynumber: 3.5 Consensus size: 48
167552681 TGCTTTATCA
* *
167552691 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
167552740 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
167552787 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
167552834 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
167552858 GCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 70 0.64
48 26 0.24
49 13 0.12
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:167552792 original size:71 final size:71
Alignment explanation
Indices: 167552692--167552858 Score: 264
Period size: 71 Copynumber: 2.3 Consensus size: 71
167552682 GCTTTATCAT
* * *
167552692 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
167552756 GCCCTTTA
64 GCCCTTTA
* *
167552764 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
167552829 CCTTTA
66 CCTTTA
167552835 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
167552859 CACTTCCTCC
Statistics
Matches: 89, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
71 77 0.87
72 12 0.13
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:167552929 original size:9 final size:9
Alignment explanation
Indices: 167552915--167552971 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
167552905 ATCTCATGTG
167552915 CATATCATA
1 CATATCATA
*
167552924 CATATCATGTG
1 CATATCA--TA
167552935 CATATCATA
1 CATATCATA
* *
167552944 CATGTCATGTG
1 CATATCA--TA
167552955 CATATCATA
1 CATATCATA
167552964 CATATCAT
1 CATATCAT
167552972 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:167552931 original size:20 final size:20
Alignment explanation
Indices: 167552903--167552973 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
167552893 GCATTTATGA
*
167552903 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
167552923 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
167552943 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
167552963 ACATATCATGT
1 ACATATCATGT
167552974 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:167552938 original size:11 final size:11
Alignment explanation
Indices: 167552908--167552962 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
167552898 TATGAACATC
167552908 TCATGTGCATA
1 TCATGTGCATA
*
167552919 TCA--TACATA
1 TCATGTGCATA
167552928 TCATGTGCATA
1 TCATGTGCATA
* *
167552939 TCA--TACATG
1 TCATGTGCATA
167552948 TCATGTGCATA
1 TCATGTGCATA
167552959 TCAT
1 TCAT
167552963 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:167553052 original size:25 final size:24
Alignment explanation
Indices: 167553010--167553057 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
167553000 ATATATAAAC
* * *
167553010 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAACGGTCA-TTTTA
167553035 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
167553058 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:167556687 original size:47 final size:47
Alignment explanation
Indices: 167556610--167556753 Score: 191
Period size: 47 Copynumber: 3.0 Consensus size: 47
167556600 TGCTTTATCA
* *
167556610 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
167556659 TATAACTGGGGCATCAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCAT-AGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* * *
167556706 GATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCAT-AGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
167556754 GCACTTCCTC
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
47 42 0.49
48 30 0.35
49 13 0.15
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (47 bp):
TATAACTGGGGCATAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:167556711 original size:71 final size:72
Alignment explanation
Indices: 167556611--167556752 Score: 207
Period size: 71 Copynumber: 2.0 Consensus size: 72
167556601 GCTTTATCAT
* *
167556611 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATCAG
1 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAG
167556676 CCCTTTA
66 CCCTTTA
* * **
167556683 ATAACTGG-GGCGTAAGCC-CTTTTGATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAA
1 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
167556746 GCCCTTT
65 GCCCTTT
167556753 TGCACTTCCT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
71 51 0.81
72 12 0.19
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.29
Consensus pattern (72 bp):
ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAG
CCCTTTA
Found at i:167556754 original size:24 final size:24
Alignment explanation
Indices: 167556611--167556754 Score: 184
Period size: 24 Copynumber: 6.0 Consensus size: 24
167556601 GCTTTATCAT
* *
167556611 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
167556636 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTG
* *
167556660 ATAACTGGGGCATCAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
*
167556683 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
167556707 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
167556731 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
167556755 CACTTCCTCC
Statistics
Matches: 107, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
23 20 0.19
24 75 0.70
25 12 0.11
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:167556825 original size:9 final size:9
Alignment explanation
Indices: 167556811--167556867 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
167556801 ATCTCATGTG
167556811 CATATCATA
1 CATATCATA
*
167556820 CATATCATGTG
1 CATATCA--TA
167556831 CATATCATA
1 CATATCATA
* *
167556840 CATGTCATGTG
1 CATATCA--TA
167556851 CATATCATA
1 CATATCATA
167556860 CATATCAT
1 CATATCAT
167556868 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:167556827 original size:20 final size:20
Alignment explanation
Indices: 167556799--167556869 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
167556789 GCATTTATGA
*
167556799 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
167556819 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
167556839 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
167556859 ACATATCATGT
1 ACATATCATGT
167556870 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:167556834 original size:11 final size:11
Alignment explanation
Indices: 167556804--167556858 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
167556794 TATGAACATC
167556804 TCATGTGCATA
1 TCATGTGCATA
*
167556815 TCA--TACATA
1 TCATGTGCATA
167556824 TCATGTGCATA
1 TCATGTGCATA
* *
167556835 TCA--TACATG
1 TCATGTGCATA
167556844 TCATGTGCATA
1 TCATGTGCATA
167556855 TCAT
1 TCAT
167556859 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:167556948 original size:25 final size:24
Alignment explanation
Indices: 167556906--167556953 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
167556896 ATATATAAAC
* * *
167556906 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAACGGTCA-TTTTA
167556931 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
167556954 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:167560569 original size:24 final size:24
Alignment explanation
Indices: 167560517--167560682 Score: 230
Period size: 24 Copynumber: 7.0 Consensus size: 24
167560507 GCTTTATCAT
*
167560517 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
167560542 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
167560566 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
167560589 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
167560613 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
167560637 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
167560660 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
167560683 GCACTTCCTC
Statistics
Matches: 129, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 43 0.33
24 74 0.57
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:167560593 original size:47 final size:48
Alignment explanation
Indices: 167560516--167560682 Score: 232
Period size: 47 Copynumber: 3.5 Consensus size: 48
167560506 TGCTTTATCA
* *
167560516 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
167560565 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* * *
167560612 GATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
167560659 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
167560683 GCACTTCCTC
Statistics
Matches: 107, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
47 68 0.64
48 26 0.24
49 13 0.12
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:167560617 original size:71 final size:71
Alignment explanation
Indices: 167560517--167560683 Score: 255
Period size: 71 Copynumber: 2.3 Consensus size: 71
167560507 GCTTTATCAT
* * *
167560517 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
167560581 GCCCTTTA
64 GCCCTTTA
* **
167560589 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
167560654 CCTTTA
66 CCTTTA
167560660 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
167560684 CACTTCCTCC
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
71 76 0.86
72 12 0.14
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:167560754 original size:9 final size:9
Alignment explanation
Indices: 167560740--167560796 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
167560730 ATCTCATATG
167560740 CATATCATA
1 CATATCATA
*
167560749 CATATCATGTG
1 CATATCA--TA
167560760 CATATCATA
1 CATATCATA
* *
167560769 CATGTCATGTG
1 CATATCA--TA
167560780 CATATCATA
1 CATATCATA
167560789 CATATCAT
1 CATATCAT
167560797 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:167560756 original size:20 final size:20
Alignment explanation
Indices: 167560728--167560798 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
167560718 GCATTTATGA
* *
167560728 ACATCTCATATGCATATCAT
1 ACATATCATGTGCATATCAT
167560748 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
167560768 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
167560788 ACATATCATGT
1 ACATATCATGT
167560799 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:167565006 original size:536 final size:541
Alignment explanation
Indices: 167562371--167572074 Score: 17181
Period size: 536 Copynumber: 18.1 Consensus size: 541
167562361 GGGGTGTTAC
* *
167562371 ATAAATGGTAGACATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAACCATTAAAAACG
1 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
* *
167562436 GGGAAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATTGTGGTCTTC
66 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
* ** **
167562501 AAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTTACTTTTATTTTGTTTATTTAAACAGCT
131 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
* *
167562566 AACTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTGCCCCTAAATTTTATCAT-TTTA
196 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
* * * *
167562630 CACTTTTGCCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCAGA
261 CACTTTT-ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
* *
167562695 ACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACGTTTACGACAAATTTTATA
325 ACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATA
**
167562760 ACTTTTACAAATTAGTCCTTTTTAGCATAGTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCA
390 ACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCA
*
167562825 ACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAATC
455 ACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACC
* *
167562890 CTAGACCTTCATCATAAGTTAA
520 CTAGACCTTCATCATAACTCAA
* *
167562912 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAGAATGTGAAAATCATTAAAAACG
1 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
* * *
167562977 AGGCAAGAACGAACTTCCTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
66 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
* *
167563042 AAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTTGCTTTTATTTTGTTTATTTAAACATTT
131 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
*
167563107 AACTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCAT-TTTA
196 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
* * * *
167563171 CACTTTTGCCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCC-AGCAGA
261 CACTTTT-ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
*
167563235 ACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTAGGACAAATTTTATA
325 ACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATA
* *
167563300 ACTTTCACAAATTAGTCCATTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCT-CA
390 ACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCA
*
167563364 ACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTGAAACC
455 ACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACC
*
167563429 CTAGACCTTCATCATAAGTCAA
520 CTAGACCTTCATCATAACTCAA
* * * * *
167563451 ATCAATGGTAGAAAGAGGTAGATCATGTTATAAGGATTTCAAGAATGTGAAAATCATTAAAAACG
1 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
* *
167563516 GGGCAAGAACGAACTTAATATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGT-GTCTTC
66 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
167563580 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
131 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
* * *
167563645 AATTACTAAATTTTATCATACTACGGCAAAAATTAAATTTTTGCCCCTAAATTTTATCTTATTTA
196 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
** * *
167563710 CACTTTTAAGCTAGGATTGTAAAATAATTTTC-TTCAATTTATTTTCACTTTAAGCCTAGCTGAA
261 CACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAA
167563774 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
326 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
* * *
167563839 CTTTTAGAAACTAGTACTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
391 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
* *
167563904 CCATAAACATGCATAATCTACCATT-AACATCAAAATACACAAATTT-TATCATAGTTCAAACCC
456 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCC
*
167563967 TAGACCTCCATCATAACTCAA
521 TAGACCTTCATCATAACTCAA
167563988 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
1 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
167564053 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
66 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
* * * *
167564118 AAACTTTC-GCCAAGGGGTTGAAGATGACCAAACTTTTGCTTTTATTTTGTTTA-TTAAACATTT
131 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
* *
167564181 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTACCCAT-AATTTTATCAT-TTTA
196 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
* * *
167564244 CACTTTTGCCCATAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGA
261 CACTTTTACCC-TAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
*
167564309 ACCACTTTCATAACTATAAAAA-CCACAATTTCCACTAAATCACAC-TTTATGACAAAATTTATA
325 ACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATA
*
167564372 ACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTA
390 ACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCA
*
167564437 ACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTGAAACC
455 ACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACC
*
167564502 CTAGACCTTCATCATAAGTCAA
520 CTAGACCTTCATCATAACTCAA
* *
167564524 AT-AATGGTAGAAAGAGGTAGATCATGTTACAAGGATTTC-AAAATGTGAAAATCATTAAAAACG
1 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
*
167564587 GGGCAAGAACGAACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
66 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
167564652 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
131 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
* * *
167564717 AATTACTAAATTTTATCATACTACGGCAAAAATTAAATTTTTGCCCCTAAATTTTATCTTATTTA
196 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
** *
167564782 CACTTTTAAGCTAGGATTGTAAAATAATTTTC-TTCAATTTATTTTCACTTTAAGCCTAGCCGAA
261 CACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAA
167564846 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
326 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
*
167564911 CTTTTACAAA-TAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAA
391 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
*
167564975 CCATAAACATGCATAATCTACCATT-AACATCAAAATACACAAATTTAT--CATAGTTCAAACCC
456 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCC
*
167565037 TAGACCTCCATCATAACTCAA
521 TAGACCTTCATCATAACTCAA
167565058 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
1 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
167565123 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
66 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
* *
167565188 AAAATTTCAGCCAAGGGGTTGAAGATGACCAAAATTT-GCTTTTATTTTGTTTA-TTAAACATTT
131 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
*
167565251 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTACCCCTAAATTTTATCAT-TTTA
196 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
* * *
167565315 CACTTTTGCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGAA
261 CACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAA
*
167565380 CCACTTTCATAACTATAAAAA-CCACAATTTCCACTAAATCACAC-TTTATGACAAAATTTATAA
326 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
*
167565443 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAA
391 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
167565508 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCC
456 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCC
*
167565573 TAGACCTTCATCATAAGTCAA
521 TAGACCTTCATCATAACTCAA
* * *
167565594 ATAAATGGTAGAAATAGGTAGATCATGTTATAAGGATTTCAAGAATGTGAAAATCATTAAAAACG
1 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
*
167565659 GGGCAAGAACGAACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
66 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
167565724 -AAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGC-TTTATTTTGTTTATTTAAACATTT
131 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
* *
167565787 AATTACTAAATTTTATCATACTACGGCAAAAATTA-ATTTTTGCCCCTAAATTTTATCTTATTTA
196 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
** *
167565851 CACTTTTAAGCTAGGATTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAA
261 CACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAA
167565916 CCACTTTCATAACTATAAAAA-CCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
326 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
*
167565980 CTTTTACAAATTAGTCCTTTTT---ATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAA
391 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
*
167566042 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCC
456 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCC
*
167566107 TAGACCTCCATCATAACTCAA
521 TAGACCTTCATCATAACTCAA
167566128 ATAAATGGTAGAAATAGGTAGAT-ATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
1 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
*
167566192 GGGCAAGAACAGACTTACTAT-GAGCTTGGAAAGCTTAAA-AAAACCCTAGCCATGGTGGTCTTC
66 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
167566255 AAAATTTCGGCCGA-GGGTTGAAGATGACCAAAATTT-GCTTTTATTTTGTTTA-TTAAACATTT
131 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
* *
167566317 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTACCCATAAATTTTATCAT-TTTA
196 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
* * *
167566381 CACTTTTGCCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACGTTAAGCCTAGCCGA
261 CACTTTT-ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
*
167566446 ACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC-TTTATGACAAAATTTATA
325 ACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATA
167566510 ACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCA
390 ACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCA
167566575 ACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACC
455 ACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACC
167566640 CTAGACCTTCATCATAACTCAA
520 CTAGACCTTCATCATAACTCAA
* * *
167566662 ATAAATGGTATAAATTGGTAGATCATGTTACAAGGATTTCAAAAACATG-AAATCATTAAAAACG
1 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
*
167566726 GGGCAAGAACGGACTTACTATAGA-CTTGGAAAGCTTAAACAAAA-CCTAGCCATGGTGGTCTTC
66 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
167566789 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACA-TT
131 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
* * *
167566853 AATTACTAAATTTTATCATACTATGGTAAAAATTA-AATTTTGCCCCTAAATTTTATCTTATTTA
196 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
* *
167566917 CACTTTTACCCTAGGCTTGT-AAATAATTTTCATTCAATTTATTTTCACTTTAAGCCGAGCTGAA
261 CACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAA
*
167566981 CCACTTTCATAACTATAAAAA-CCACAATTTCCACTAAAT--CACTTTTATGGCAAATTTTATAA
326 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
*
167567043 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAA
391 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
167567108 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCC
456 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCC
167567173 TAGACCTTCATCATAACTCAA
521 TAGACCTTCATCATAACTCAA
*
167567194 ATAAATGGTAGAAATTGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
1 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
167567259 GGGCAAGAACGGACTTACTAT--AGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
66 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
167567322 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
131 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
*
167567387 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCTTATTTA
196 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
167567452 CACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCA-TTTAAGCCTAGCCGAA
261 CACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAA
167567516 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC-TTTATGACAAA-TTTATAA
326 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
167567579 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
391 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
*
167567644 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCC
456 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCC
167567709 TAGACCTTCATCATAACTCAA
521 TAGACCTTCATCATAACTCAA
167567730 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
1 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
167567795 GGGCAAGAACGGACTTACTAT--AGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
66 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
167567858 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
131 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
* *
167567923 AATTACTAAATTTTATCATACTATGG-AAAAATTA-AATTTTGCCCCTAAATTTTATCTTATTTA
196 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
167567986 CACTTTTACCCTAGGCTTGT-AAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAA
261 CACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAA
167568050 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATG--AAATTTTATAA
326 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
167568113 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
391 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
167568178 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT-GTTCAAACCC
456 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCC
167568242 TAGACC-TCATCATAACTCAA
521 TAGACCTTCATCATAACTCAA
167568262 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
1 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
167568327 GGGCAAGAAC-GACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
66 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
167568391 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACA-TT
131 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
*
167568455 AATTACTAAATTTTATCATACTATGG-AAAAATTA-ATTTTTGCCCCTAAATTTTATCTTATTTA
196 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
167568518 CACTTTTACCCTAGGCTTGT-AAATAATTTTCATTCAATTTATTTTCAC-TTAAGCCTAGCCGAA
261 CACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAA
167568581 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATG-CAAATTTTATAA
326 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
167568645 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
391 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
*
167568710 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCC
456 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCC
167568775 TAGACC-TCATCATAACTCAA
521 TAGACCTTCATCATAACTCAA
167568795 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
1 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
167568860 GGGCAAGAAC-GACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
66 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
167568924 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTT-TTTATTTAAACATTT
131 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
*
167568988 AATTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
196 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
167569053 CACTTTTACCCTAGGCTTGT-AAATAATTTTCATTCAATTTATTTTCA-TTTAAGCCTAGCCGAA
261 CACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAA
*
167569116 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGAAAAATTTTATAA
326 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
167569181 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
391 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
167569246 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCC
456 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCC
167569311 TA-ACCTTCATCATAACTCAA
521 TAGACCTTCATCATAACTCAA
167569331 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
1 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
167569396 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
66 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
* *
167569461 AAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTT-TCTTTTATTTTGTTTATTTAAACATTT
131 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
*
167569525 AACT--TAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCAT-TTTA
196 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
* * * *
167569587 CACTTTTGCCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCAGA
261 CACTTTT-ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
167569652 ACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAA-TTTATA
325 ACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATA
167569716 ACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCA
390 ACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCA
167569781 ACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT-GTTCAAACC
455 ACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACC
167569845 CTAGACCTTCATCATAACTCAA
520 CTAGACCTTCATCATAACTCAA
*
167569867 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTC-AAAATGTGAAAATCATTAAAAACG
1 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
167569931 GGGCAAGAAC-GACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
66 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
167569995 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGC-TTTATTTTGTTTATTTAAACATTT
131 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
*
167570059 AATTACTAAATTTTATCATACTATGGCAAAAATTAAATTTTTGCCCCTAAATTTTATCATATTTA
196 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
167570124 CACTTTTAGCCCTAGGCTTGT-AAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
261 CACTTTTA-CCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
167570188 ACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAA-TTTATA
325 ACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATA
167570252 ACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCA
390 ACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCA
167570317 ACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACC
455 ACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACC
167570382 CTAGACCTTCATCATAACTCAA
520 CTAGACCTTCATCATAACTCAA
167570404 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
1 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
167570469 GGGCAAGAAC-GACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
66 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
167570533 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
131 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
167570598 AATTACTAAATTTTATCATACTATGG-AAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
196 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
167570662 CACTTTTACCCTAGGCTTGT--AATAATTTTCATTCAATTTATTTTCA-TTTAAGCCTAGCCGAA
261 CACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAA
167570724 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGA-AAA-TTT-TAA
326 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
167570786 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
391 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
167570851 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCC
456 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCC
167570916 TA-ACCTTCATCATAACTCAA
521 TAGACCTTCATCATAACTCAA
167570936 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
1 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
167571001 GGGCAAGAAC-GACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
66 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
167571065 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGC-TTTATTTTGTTTATTTAAACATTT
131 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
167571129 AATTACTAAATTTTATCATACTATGGCAAAAATTA-ATTTTTGCCCCTAAATTTTATCATATTTA
196 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
*
167571193 CACTTTTA-GCTAGGCTT-TAAAATAATTTTCATTCAATTTATTTTCAC-TTAAGCCTAGCCGAA
261 CACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAA
167571255 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC-TTTATGACAAA-TTTATAA
326 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
167571318 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
391 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
167571383 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAA-CC
456 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCC
167571447 TAGACC-TCATCATAACTCAA
521 TAGACCTTCATCATAACTCAA
167571467 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAA--TGAAAATCATTAAAAACG
1 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
167571530 GGGCAAGAAC-GACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
66 GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
*
167571594 AAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
131 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
167571659 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
196 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
* * *
167571724 CACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCTAGCCGAT
261 CACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAA
*
167571789 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC-TTTATGACAAAATTTATAA
326 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
167571853 CTTTTAC-AATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTTGTTTCTCCA
391 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAG-TTGTTTCTCCA
*
167571917 ACCATAAACATGCATAATCTACCATTAAACATC-AAATACACAAATTTATAACATGGTTGAAA-C
455 ACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACC
167571980 CTAGACCTTCATCATAACTCAA
520 CTAGACCTTCATCATAACTCAA
* * *
167572002 ATAAATGGTAGATATTGGTAGATCATGTTACAAGGATTTCAAAAACATG-AAATCATTAAAAACG
1 ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
167572066 GGGCAAGAA
66 GGGCAAGAA
167572075 NNNNNNNNNN
Statistics
Matches: 8844, Mismatches: 225, Indels: 193
0.95 0.02 0.02
Matches are distributed among these distances:
529 122 0.01
530 131 0.01
531 553 0.06
532 995 0.11
533 875 0.10
534 1383 0.16
535 891 0.10
536 1964 0.22
537 687 0.08
538 520 0.06
539 292 0.03
540 127 0.01
541 304 0.03
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.33
Consensus pattern (541 bp):
ATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACG
GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
CACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAA
CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCC
TAGACCTTCATCATAACTCAA
Found at i:167577461 original size:40 final size:40
Alignment explanation
Indices: 167577416--167577545 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
167577406 CGGAATACAA
167577416 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
167577456 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
167577496 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
167577536 CCGGATATAA
1 CCGGATATAA
167577546 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:167577560 original size:40 final size:40
Alignment explanation
Indices: 167577416--167577579 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
167577406 CGGAATACAA
* **
167577416 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
167577456 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
167577496 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
167577536 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
167577576 CCGG
1 CCGG
167577580 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:167582283 original size:44 final size:44
Alignment explanation
Indices: 167582180--167582281 Score: 154
Period size: 44 Copynumber: 2.4 Consensus size: 44
167582170 TATATTGTAC
*
167582180 ATTGGAACTAAGTGTGCGAGACTGAGATAGCTTCGATTAAATAT
1 ATTGGCACTAAGTGTGCGAGACTGAGATAGCTTCGATTAAATAT
* **
167582224 ATTGGCACTAAGTGTGCGAGACT-AGATAGCTTCGTTTATTTAT
1 ATTGGCACTAAGTGTGCGAGACTGAGATAGCTTCGATTAAATAT
167582267 -TTGGCACTAAGTGTG
1 ATTGGCACTAAGTGTG
167582282 TGAGTTTTCA
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
42 15 0.28
43 17 0.31
44 22 0.41
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.33
Consensus pattern (44 bp):
ATTGGCACTAAGTGTGCGAGACTGAGATAGCTTCGATTAAATAT
Found at i:167590011 original size:39 final size:39
Alignment explanation
Indices: 167589968--167590090 Score: 192
Period size: 39 Copynumber: 3.2 Consensus size: 39
167589958 CCCGGCTATA
167589968 TTCCAACACGTAGCCTGCGGACCTCAAGTCCGGATATGT
1 TTCCAACACGTAGCCTGCGGACCTCAAGTCCGGATATGT
* *
167590007 TTCCAGCATGTAGCCTGCGGACCTCAAGTCCGGATATGT
1 TTCCAACACGTAGCCTGCGGACCTCAAGTCCGGATATGT
* * * *
167590046 TTCCAGCACGTAGCCTGTGGACCACAAGTCCCGATATGT
1 TTCCAACACGTAGCCTGCGGACCTCAAGTCCGGATATGT
167590085 TTCCAA
1 TTCCAA
167590091 ATATCATGCA
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.24
Consensus pattern (39 bp):
TTCCAACACGTAGCCTGCGGACCTCAAGTCCGGATATGT
Found at i:167592024 original size:24 final size:24
Alignment explanation
Indices: 167591988--167592149 Score: 96
Period size: 24 Copynumber: 6.8 Consensus size: 24
167591978 GAGCCAACAT
* *
167591988 TGGCACTAAGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * *
167592012 TGGCACTATGTGTGCGAAATCGAT
1 TGGCACTATGTGTGCGAATTTGAA
* *
167592036 TGGCACTATGTATGCTG-GTTTGAA
1 TGGCACTATGTGTGC-GAATTTGAA
* * ** * * *
167592060 TGTCAATAAATGAGTGAATTTCCAA
1 TGGCACTATGTGTGCGAATTT-GAA
* * *
167592085 -AGCACTATGTGTGCG-GTTTAGCA
1 TGGCACTATGTGTGCGAATTT-GAA
* *
167592108 TGGCACTATGTGTACGAATTTGAT
1 TGGCACTATGTGTGCGAATTTGAA
*
167592132 TAGCACTATGTGTGCGAA
1 TGGCACTATGTGTGCGAA
167592150 ATCGGTTGAG
Statistics
Matches: 96, Mismatches: 37, Indels: 10
0.67 0.26 0.07
Matches are distributed among these distances:
23 5 0.05
24 85 0.89
25 6 0.06
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:167592963 original size:15 final size:15
Alignment explanation
Indices: 167592943--167592972 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
167592933 ACATAACATA
167592943 AAATCGTATGATATG
1 AAATCGTATGATATG
167592958 AAATCGTATGATATG
1 AAATCGTATGATATG
167592973 GTTGTTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (15 bp):
AAATCGTATGATATG
Found at i:167593306 original size:24 final size:24
Alignment explanation
Indices: 167593274--167593324 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
167593264 TACTAACTAG
167593274 CTATTTAAACATCATACATATGCC
1 CTATTTAAACATCATACATATGCC
167593298 CTATTTAAACATCATACATATGCC
1 CTATTTAAACATCATACATATGCC
167593322 CTA
1 CTA
167593325 CTCATGCACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.33
Consensus pattern (24 bp):
CTATTTAAACATCATACATATGCC
Found at i:167599565 original size:27 final size:28
Alignment explanation
Indices: 167599535--167599604 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
167599525 ATAATAAGTC
*
167599535 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
167599562 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
167599590 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
167599605 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:167607487 original size:27 final size:28
Alignment explanation
Indices: 167607457--167607526 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
167607447 ATAATAAGTC
*
167607457 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
167607484 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
167607512 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
167607527 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:167611886 original size:39 final size:37
Alignment explanation
Indices: 167611744--167611889 Score: 152
Period size: 39 Copynumber: 3.8 Consensus size: 37
167611734 ATCACGATTT
*
167611744 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACT-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGA--TAA-AACTA
**
167611783 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATAGCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATAAAACTA
* *
167611820 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAA-CT-A
* * *
167611859 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATA
167611890 TCATTCAATT
Statistics
Matches: 92, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
36 5 0.05
37 30 0.33
38 1 0.01
39 54 0.59
40 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (37 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAACTA
Found at i:167612047 original size:20 final size:21
Alignment explanation
Indices: 167612014--167612052 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
167612004 AGCCCGGTGG
*
167612014 AATCAAATACTCATACACACA
1 AATCAAATAATCATACACACA
167612035 AATC-AATAATCATACACA
1 AATCAAATAATCATACACA
167612053 TCCATATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.54, C:0.26, G:0.00, T:0.21
Consensus pattern (21 bp):
AATCAAATAATCATACACACA
Found at i:167622967 original size:40 final size:39
Alignment explanation
Indices: 167622922--167623129 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
167622912 CGGAATACAA
*
167622922 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
167622962 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
167623002 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
167623042 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
167623082 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
167623122 CCGGATAT
1 CCGGATAT
167623130 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:167623062 original size:80 final size:80
Alignment explanation
Indices: 167622922--167623128 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
167622912 CGGAATACAA
* * *
167622922 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
167622986 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
167623002 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
167623066 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
167623082 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
167623129 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:167626882 original size:40 final size:40
Alignment explanation
Indices: 167626836--167627018 Score: 233
Period size: 40 Copynumber: 4.6 Consensus size: 40
167626826 CTCGCACAAG
* *
167626836 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
167626876 GCCTTCGGGACTTAG-CCTGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
167626915 GCCTTCGGGTCTTAGCCCGGATATAGTAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * * *
167626955 GCCTTCGGATCTTAGTCCGGATATAGTCACTGGCATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
**
167626995 GCCTTCGGAACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
167627019 CATTCAAATA
Statistics
Matches: 124, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
39 34 0.27
40 90 0.73
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:167626955 original size:79 final size:79
Alignment explanation
Indices: 167626800--167627018 Score: 253
Period size: 79 Copynumber: 2.8 Consensus size: 79
167626790 ACCCAAGTAT
* ** * * * *
167626800 CTTCGGGATTTAGCCAGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGTC
1 CTTCGGGACTTAGCCAGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGTA
*
167626864 ACTAGCATAAATGC
66 ACTAGCACAAATGC
* * *
167626878 CTTCGGGACTTAGCCTGATATAGTCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTA
1 CTTCGGGACTTAGCCAGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGTA
*
167626943 ACTCGCACAAATGC
66 ACTAGCACAAATGC
* * * **
167626957 CTTC-GGATCTTAGTCCGGATATAGTCACTGGCATAAAAGCCTTCGGAACTTAGCCCGGATAT
1 CTTCGGGA-CTTAG-CCAGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
167627019 CATTCAAATA
Statistics
Matches: 120, Mismatches: 18, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
78 30 0.25
79 49 0.41
80 41 0.34
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (79 bp):
CTTCGGGACTTAGCCAGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGTA
ACTAGCACAAATGC
Found at i:167631806 original size:19 final size:19
Alignment explanation
Indices: 167631784--167631840 Score: 51
Period size: 26 Copynumber: 2.6 Consensus size: 19
167631774 AGCTAGGATG
167631784 ATTTATTTGATTAAATAAT
1 ATTTATTTGATTAAATAAT
167631803 ATTTATGATTTATTTGATTAAATAAT
1 A-TT-T-A--T--TTGATTAAATAAT
167631829 ATTTATTTGATT
1 ATTTATTTGATT
167631841 CATGCTTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 14
0.69 0.00 0.31
Matches are distributed among these distances:
19 7 0.23
20 2 0.06
21 2 0.06
22 1 0.03
23 1 0.03
24 2 0.06
25 2 0.06
26 14 0.45
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (19 bp):
ATTTATTTGATTAAATAAT
Found at i:167631810 original size:26 final size:26
Alignment explanation
Indices: 167631781--167631834 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
167631771 TTAAGCTAGG
167631781 ATGATTTATTTGATTAAATAATATTT
1 ATGATTTATTTGATTAAATAATATTT
167631807 ATGATTTATTTGATTAAATAATATTT
1 ATGATTTATTTGATTAAATAATATTT
167631833 AT
1 AT
167631835 TTGATTCATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (26 bp):
ATGATTTATTTGATTAAATAATATTT
Found at i:167634236 original size:40 final size:39
Alignment explanation
Indices: 167634192--167634334 Score: 205
Period size: 40 Copynumber: 3.6 Consensus size: 39
167634182 CTACTCGCTT
** *
167634192 AAATGCCTTCGGGACTTAGCCCGATTTTAGTAGCTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGA-AATAGTAACTCGCAC
167634232 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCC-GAAATAGTAACTCGCAC
* * *
167634272 AAATGCCTTCGGGGCTTAGCTCGGAAATAGTAACTTGCAC
1 AAATGCCTTCGGGACTTAGC-CCGAAATAGTAACTCGCAC
167634312 AAATGCCTTCGGGACTTAGCCCG
1 AAATGCCTTCGGGACTTAGCCCG
167634335 GTTATCATCC
Statistics
Matches: 93, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
39 2 0.02
40 88 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.24
Consensus pattern (39 bp):
AAATGCCTTCGGGACTTAGCCCGAAATAGTAACTCGCAC
Found at i:167635738 original size:11 final size:11
Alignment explanation
Indices: 167635722--167635746 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
167635712 AACATGAGAG
167635722 CTTTTTTTTTT
1 CTTTTTTTTTT
167635733 CTTTTTTTTTT
1 CTTTTTTTTTT
167635744 CTT
1 CTT
167635747 CTAGGTACGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
CTTTTTTTTTT
Found at i:167642418 original size:40 final size:40
Alignment explanation
Indices: 167642373--167642556 Score: 226
Period size: 40 Copynumber: 4.6 Consensus size: 40
167642363 CTCACACAAG
* * *
167642373 GCCTTCAGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
167642413 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
167642453 GCCTTTGGGTCTTAGCCCGGATATAG-CAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * *
167642493 GCCTTCGGATCTTAGTCCGGATATAGTCACTGGCATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
167642533 GCCTTTGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
167642557 CATTCGAATA
Statistics
Matches: 123, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 121 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:167647349 original size:19 final size:19
Alignment explanation
Indices: 167647327--167647383 Score: 51
Period size: 26 Copynumber: 2.6 Consensus size: 19
167647317 AGCTAGGATG
167647327 ATTTATTTGATTAAATAAT
1 ATTTATTTGATTAAATAAT
167647346 ATTTATGATTTATTTGATTAAATAAT
1 A-TT-T-A--T--TTGATTAAATAAT
167647372 ATTTATTTGATT
1 ATTTATTTGATT
167647384 CATGCTTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 14
0.69 0.00 0.31
Matches are distributed among these distances:
19 7 0.23
20 2 0.06
21 2 0.06
22 1 0.03
23 1 0.03
24 2 0.06
25 2 0.06
26 14 0.45
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (19 bp):
ATTTATTTGATTAAATAAT
Found at i:167647353 original size:26 final size:26
Alignment explanation
Indices: 167647324--167647377 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
167647314 TTAAGCTAGG
167647324 ATGATTTATTTGATTAAATAATATTT
1 ATGATTTATTTGATTAAATAATATTT
167647350 ATGATTTATTTGATTAAATAATATTT
1 ATGATTTATTTGATTAAATAATATTT
167647376 AT
1 AT
167647378 TTGATTCATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (26 bp):
ATGATTTATTTGATTAAATAATATTT
Found at i:167650876 original size:40 final size:39
Alignment explanation
Indices: 167650819--167650968 Score: 140
Period size: 40 Copynumber: 3.8 Consensus size: 39
167650809 TTGGAATGAT
* * * *
167650819 ATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAA-TAA
* * *
167650859 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TAATAA
* ** *
167650899 ATCCGGACTAAGACCCGAAGGCCTTTGTGCAAGTTACTAA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAG-TAATAA
* *
167650939 ATCCGGGTTAAGACCCGAAGGCAATCGTGC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC
167650969 GAATCACTAT
Statistics
Matches: 91, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 84 0.92
41 4 0.04
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATAA
Found at i:167650916 original size:80 final size:80
Alignment explanation
Indices: 167650817--167650970 Score: 209
Period size: 80 Copynumber: 1.9 Consensus size: 80
167650807 CATTGGAATG
* * * * *
167650817 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTACATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGACTAAGACCCGAAGGCAATTATGCAAGTAACTAAATCCGGGCTAAGACCCGAAGGCA
*
167650882 TTCGTGCGAGTTGAT
66 ATCGTGCGAGTTGAT
** * * *
167650897 ATATCCGGACTAAGACCCGAAGGCCTTTGTGCAAGTTACTAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGACTAAGACCCGAAGGCAATTATGCAAGTAACTAAATCCGGGCTAAGACCCGAAGGCA
167650962 ATCGTGCGA
66 ATCGTGCGA
167650971 ATCACTATAA
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
80 63 1.00
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (80 bp):
ATATCCGGACTAAGACCCGAAGGCAATTATGCAAGTAACTAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGAT
Found at i:167650985 original size:40 final size:40
Alignment explanation
Indices: 167650861--167651019 Score: 126
Period size: 40 Copynumber: 4.0 Consensus size: 40
167650851 GTAATTACAT
* * * *
167650861 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGA-TATAT
1 CCGGGCTAAGACCCGAAGGCAATCGTGCGA-ATCACTATAA
* ** * *
167650901 CCGGACTAAGACCCGAAGGCCTTTGTGC-AAGTTACTA-AA
1 CCGGGCTAAGACCCGAAGGCAATCGTGCGAA-TCACTATAA
*
167650940 TCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACTATAA
1 -CCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACTATAA
* * * * * *
167650981 CCGGGCTAGGTCCCAAAGACAATCGAGCGAGTCACTATA
1 CCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACTATA
167651020 TCCAGTTAAA
Statistics
Matches: 95, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
39 4 0.04
40 87 0.92
41 4 0.04
ACGTcount: A:0.30, C:0.25, G:0.26, T:0.19
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACTATAA
Found at i:167658869 original size:41 final size:40
Alignment explanation
Indices: 167658822--167658950 Score: 140
Period size: 38 Copynumber: 3.2 Consensus size: 40
167658812 CTAGTATTAC
*
167658822 ATCCGGGCTAAGACCCGAAGGCATTCGTTGCGAGTTGA-TAT
1 ATCCGGGCTAAGACCCGAAGGCATTCG-TGCGAGTT-ACTAA
* *
167658863 ATCCGGGCTAAGACCCGAAGG--TTTGTGCAAGTTACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
167658901 ATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACTATA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTACTA-A
167658942 A-CCGGGCTA
1 ATCCGGGCTA
167658951 GCTCCCGAAG
Statistics
Matches: 74, Mismatches: 10, Indels: 9
0.80 0.11 0.10
Matches are distributed among these distances:
37 1 0.01
38 29 0.39
39 3 0.04
40 18 0.24
41 23 0.31
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:167662447 original size:30 final size:31
Alignment explanation
Indices: 167662391--167662453 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
167662381 CCTTTTCATA
*
167662391 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
167662422 TTTCAAATTTCATATTACT-GGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
167662452 TT
1 TT
167662454 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 13 0.45
31 16 0.55
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:167662692 original size:23 final size:24
Alignment explanation
Indices: 167662645--167662830 Score: 287
Period size: 23 Copynumber: 8.0 Consensus size: 24
167662635 GCTTTATCAT
*
167662645 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
167662670 ACAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
167662693 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
167662716 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
167662739 ATAACTGGGGCATAAG-CCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
167662762 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
167662785 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
167662808 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
167662831 TGCACTTCCT
Statistics
Matches: 153, Mismatches: 3, Indels: 11
0.92 0.02 0.07
Matches are distributed among these distances:
22 2 0.01
23 126 0.82
24 18 0.12
25 7 0.05
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:167662903 original size:9 final size:9
Alignment explanation
Indices: 167662889--167662945 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
167662879 ATCTCATGTG
167662889 CATATCATA
1 CATATCATA
*
167662898 CATATCATGTG
1 CATATCA--TA
167662909 CATATCATA
1 CATATCATA
* *
167662918 CATGTCATGTG
1 CATATCA--TA
167662929 CATATCATA
1 CATATCATA
167662938 CATATCAT
1 CATATCAT
167662946 GTTATCAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:167662905 original size:20 final size:20
Alignment explanation
Indices: 167662877--167662947 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
167662867 GCATTTATGA
*
167662877 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
167662897 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
167662917 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
167662937 ACATATCATGT
1 ACATATCATGT
167662948 TATCAAAATC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:167662912 original size:11 final size:11
Alignment explanation
Indices: 167662882--167662936 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
167662872 TATGAACATC
167662882 TCATGTGCATA
1 TCATGTGCATA
*
167662893 TCA--TACATA
1 TCATGTGCATA
167662902 TCATGTGCATA
1 TCATGTGCATA
* *
167662913 TCA--TACATG
1 TCATGTGCATA
167662922 TCATGTGCATA
1 TCATGTGCATA
167662933 TCAT
1 TCAT
167662937 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:167663025 original size:25 final size:24
Alignment explanation
Indices: 167662983--167663030 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
167662973 ATATATAAAC
* * *
167662983 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAACGGTCA-TTTTA
167663008 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
167663031 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:167664248 original size:27 final size:27
Alignment explanation
Indices: 167664187--167664263 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
167664177 GGGCATATTC
*
167664187 GTCATTTTACCATATA-GGGTATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
*
167664213 GTCACTTTACCCTATAGGGGCT-TTACG
1 GTCATTTTACCCTATAGGGG-TATTACG
*
167664240 GTCTTTTTA-CCTAATAGGGGTATT
1 GTCATTTTACCCT-ATAGGGGTATT
167664264 TTAGACATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
26 18 0.42
27 24 0.56
28 1 0.02
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.39
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTACG
Found at i:167664324 original size:27 final size:27
Alignment explanation
Indices: 167664282--167664519 Score: 192
Period size: 27 Copynumber: 8.7 Consensus size: 27
167664272 TTCATCCTAC
* * * *
167664282 AAGGGTGTTTTGGTAAATCTACAAACT
1 AAGGGTATTTCGGTAATTTTACAAACT
* ** *
167664309 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTCGGTAATTTTACAAACT
* ** * *
167664336 AATGGTATTTCTATAATTTTTAGAAAGT
1 AAGGGTATTTCGGTAA-TTTTACAAACT
* *
167664364 CAAGGGTATTTCTGTAACTTTGTA-AATC-
1 -AAGGGTATTTCGGTAA-TTT-TACAAACT
* * *
167664392 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTCGGTAATTTTACAAACT
* * *
167664419 GAGGGTATTTCGGTAATTTCACAAACC
1 AAGGGTATTTCGGTAATTTTACAAACT
*
167664446 AAGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTCGGTAATTTTACAAACT
* *
167664473 AGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTCGGTAATTTTACAAACT
**
167664500 AAGGGTATTTTAGTAATTTT
1 AAGGGTATTTCGGTAATTTT
167664520 GTAAATCGAG
Statistics
Matches: 168, Mismatches: 38, Indels: 10
0.78 0.18 0.05
Matches are distributed among these distances:
25 2 0.01
26 5 0.03
27 133 0.79
28 7 0.04
29 19 0.11
30 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTCGGTAATTTTACAAACT
Found at i:167664452 original size:54 final size:54
Alignment explanation
Indices: 167664281--167664519 Score: 228
Period size: 54 Copynumber: 4.4 Consensus size: 54
167664271 TTTCATCCTA
* * * * * **
167664281 CAAGGGTGTTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTTACAAAC
* * * * * * ** *
167664335 CAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-TTAAGGGTATTTCGGTAATTTTACAAAC
* * *
167664391 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTTACAAAC
* * *
167664445 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTTACAAAC
* *
167664499 TAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
167664520 GTAAATCGAG
Statistics
Matches: 150, Mismatches: 31, Indels: 8
0.79 0.16 0.04
Matches are distributed among these distances:
54 99 0.66
55 16 0.11
56 35 0.23
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTTACAAAC
Found at i:167664531 original size:27 final size:27
Alignment explanation
Indices: 167664309--167664587 Score: 170
Period size: 27 Copynumber: 10.3 Consensus size: 27
167664299 TCTACAAACT
* * *
167664309 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTAGTAATTTTATAAATC
* *
167664336 AATGGTATTTCTA-TAATTTTTAGAAAGTC
1 AAGGGTATTT-TAGTAA-TTTTATAAA-TC
* *
167664365 AAGGGTATTTCT-GTAACTTTGTAAATC
1 AAGGGTATTT-TAGTAATTTTATAAATC
* * * *
167664392 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTAGTAATTTTATAAATC
* ** * * *
167664419 GAGGGTATTTCGGTAATTTCACAAACC
1 AAGGGTATTTTAGTAATTTTATAAATC
* *
167664446 AAGGGTATTTTGGTAATTTTACAAA-C
1 AAGGGTATTTTAGTAATTTTATAAATC
* * *
167664472 TAGGGGTATTTTGGTAATTTTACAAA-C
1 -AAGGGTATTTTAGTAATTTTATAAATC
*
167664499 TAAGGGTATTTTAGTAATTTTGTAAATC
1 -AAGGGTATTTTAGTAATTTTATAAATC
* *** * *
167664527 GAGGGTAAAATAGTAATTCTGTAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
*** *
167664554 AAGGGTAAAATAGTAATTCTATAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
*
167664581 GAGGGTA
1 AAGGGTA
167664588 AAACGGTAAT
Statistics
Matches: 209, Mismatches: 36, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.01
27 177 0.85
28 15 0.07
29 15 0.07
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (27 bp):
AAGGGTATTTTAGTAATTTTATAAATC
Found at i:167664532 original size:81 final size:80
Alignment explanation
Indices: 167664281--167664533 Score: 226
Period size: 81 Copynumber: 3.1 Consensus size: 80
167664271 TTTCATCCTA
* * * * ** ** * *
167664281 CAAGGGTGTTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
167664346 CTA-TAATTTTTAGAAAGT
66 -TAGTAATTTTT--AAA-T
* * *
167664364 CAAGGGTATTTCT-GTAACTTTGTA-AATC-AGGGGTATTTTGGTAATTTTACAAATTGAGGGTA
1 CAAGGGTATTT-TGGTAA-TTT-TACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTA
** ** *
167664426 TTTCGGTAATTTCACAAAC
63 TTTTAGTAATTT-TTAAAT
167664445 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
167664510 TAGTAATTTTGTAAAT
66 TAGTAATTTT-TAAAT
*
167664526 CGAGGGTA
1 CAAGGGTA
167664534 AAATAGTAAT
Statistics
Matches: 134, Mismatches: 27, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
79 2 0.01
80 7 0.05
81 67 0.50
82 3 0.02
83 48 0.36
84 5 0.04
85 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (80 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
TAGTAATTTTTAAAT
Found at i:167664560 original size:81 final size:80
Alignment explanation
Indices: 167664377--167664560 Score: 190
Period size: 81 Copynumber: 2.3 Consensus size: 80
167664367 GGGTATTTCT
* * *
167664377 GTAACTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACA
1 GTAA-TTTGTAAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACA
*** *
167664442 AACCAAGGGTATTTTG
65 AACCAAGGGTAAAATA
* * ***
167664458 GTAATTT-TACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGT
1 GTAATTTGTA-AATC-AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCAC
* *
167664522 AAATCGAGGGTAAAATA
64 AAACCAAGGGTAAAATA
*
167664539 GTAATTCTGTAAATCAAGGGTA
1 GTAATT-TGTAAATCAGGGGTA
167664561 AAATAGTAAT
Statistics
Matches: 83, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
79 2 0.02
80 6 0.07
81 69 0.83
82 4 0.05
83 2 0.02
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (80 bp):
GTAATTTGTAAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACAA
ACCAAGGGTAAAATA
Found at i:167664588 original size:27 final size:27
Alignment explanation
Indices: 167664512--167664828 Score: 404
Period size: 27 Copynumber: 11.7 Consensus size: 27
167664502 GGGTATTTTA
* **
167664512 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
167664539 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
167664566 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
167664593 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
167664620 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
167664647 ATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* * *
167664674 GTAATTCTATAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
167664701 GTAATTCTGTAAATCGGGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
167664728 GTAATTCTGTAAA-CTAAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
167664755 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
167664782 GTAATTTTGTAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
167664809 GTAATTTTACAAATCGAGGG
1 GTAATTCTGTAAATCGAGGG
167664829 CATTTCAGTA
Statistics
Matches: 258, Mismatches: 28, Indels: 8
0.88 0.10 0.03
Matches are distributed among these distances:
26 2 0.01
27 255 0.99
28 1 0.00
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:167669799 original size:40 final size:40
Alignment explanation
Indices: 167669681--167669868 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
167669671 CAAATTCTCG
* *
167669681 CACACTAAGTGCCAATACATAGCCGAAGCTATTTC-AATCTCG
1 CACACTAAGTGCC-ATACATAGCCGAAGCTATCTCGAA--TCA
* *
167669723 CACACTAAGTGTCATACATAGCTGAAGCTATCTCGAATCA
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATCA
* * * * *
167669763 CACATTAAGTGCCGTACATGGCCGAATCTATTTCGAATCA
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATCA
* * * *
167669803 CACACTGAGTGCCATACATAGCCGAAGTTATCTCAAATCG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATCA
*
167669843 CACACTAAGTGCCATACATAGTCGAA
1 CACACTAAGTGCCATACATAGCCGAA
167669869 TTGTCATCAA
Statistics
Matches: 123, Mismatches: 22, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
40 90 0.73
41 19 0.15
42 14 0.11
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.24
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATCA
Found at i:167669869 original size:80 final size:80
Alignment explanation
Indices: 167669678--167669869 Score: 242
Period size: 80 Copynumber: 2.4 Consensus size: 80
167669668 ACTCAAATTC
* * *
167669678 TCGCACACTAAGTGCCAATACATAGCCGAAGCTATTTCAATCTCGCACACTAAGTGTCATACATA
1 TCGCACACTAAGTGCC-ATACATAGCCGAATCTATTTCAA-CTCACACACTAAGTGCCATACATA
* *
167669743 GCTGAAGCTATCTCGAA
64 GCCGAAGCTATCTCAAA
* * * * *
167669760 TCACACATTAAGTGCCGTACATGGCCGAATCTATTTCGAA-TCACACACTGAGTGCCATACATAG
1 TCGCACACTAAGTGCCATACATAGCCGAATCTATTTC-AACTCACACACTAAGTGCCATACATAG
*
167669824 CCGAAGTTATCTCAAA
65 CCGAAGCTATCTCAAA
*
167669840 TCGCACACTAAGTGCCATACATAGTCGAAT
1 TCGCACACTAAGTGCCATACATAGCCGAAT
167669870 TGTCATCAAA
Statistics
Matches: 93, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 59 0.63
81 18 0.19
82 16 0.17
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (80 bp):
TCGCACACTAAGTGCCATACATAGCCGAATCTATTTCAACTCACACACTAAGTGCCATACATAGC
CGAAGCTATCTCAAA
Found at i:167670408 original size:24 final size:24
Alignment explanation
Indices: 167670353--167670401 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
167670343 AACTTGTTTA
167670353 ACTATCAATAACTATTCAAATTCT
1 ACTATCAATAACTATTCAAATTCT
167670377 ACTATCAATAACTATTCAAATTCT
1 ACTATCAATAACTATTCAAATTCT
167670401 A
1 A
167670402 TCATCAAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (24 bp):
ACTATCAATAACTATTCAAATTCT
Found at i:167675215 original size:40 final size:38
Alignment explanation
Indices: 167675116--167675257 Score: 137
Period size: 40 Copynumber: 3.6 Consensus size: 38
167675106 ATTGAATGAT
* * *
167675116 ATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT-TAC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCT---AGTCTAC
*
167675155 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGT--CTAC
* *
167675195 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTC-TAC
167675234 TATCCGGGCTAAGACCCGAAGGCA
1 -ATCCGGGCTAAGACCCGAAGGCA
167675258 TTTGAGCACA
Statistics
Matches: 88, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
37 2 0.02
38 1 0.01
39 16 0.18
40 69 0.78
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.20
Consensus pattern (38 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTCTAC
Found at i:167675278 original size:40 final size:40
Alignment explanation
Indices: 167675155--167675280 Score: 137
Period size: 40 Copynumber: 3.1 Consensus size: 40
167675145 TGGAAATTAC
* * * * *
167675155 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTTAT
* ** *
167675195 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTTAT
* *
167675235 ATCCGGGCTAAGACCCGAAGGCATTTGAGC-ACATGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGGTTAT
167675275 ATCCGG
1 ATCCGG
167675281 TTATATTCCG
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
39 1 0.01
40 69 0.99
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTTAT
Found at i:167680613 original size:42 final size:42
Alignment explanation
Indices: 167680547--167680701 Score: 214
Period size: 40 Copynumber: 3.8 Consensus size: 42
167680537 ATGTCGAATA
167680547 CTCGAATTCTCACACACTAAGTGCCAATACATAGCCGAAGCTAT
1 CTCGAA-TCTCACACACTAAGTGCC-ATACATAGCCGAAGCTAT
* *
167680591 TTC-AATCTCACACACTAAGTGCCATACATAGCCAAAGCTAT
1 CTCGAATCTCACACACTAAGTGCCATACATAGCCGAAGCTAT
*
167680632 CTCGAA-C-CACACACTAAGTGCCATACATAGCCGAATCTAT
1 CTCGAATCTCACACACTAAGTGCCATACATAGCCGAAGCTAT
167680672 CTCGAATCGT---ACACTAAGTGCCATACATAG
1 CTCGAATC-TCACACACTAAGTGCCATACATAG
167680702 TCAAATTGTC
Statistics
Matches: 102, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
40 57 0.56
41 21 0.21
42 20 0.20
43 2 0.02
44 2 0.02
ACGTcount: A:0.35, C:0.30, G:0.13, T:0.23
Consensus pattern (42 bp):
CTCGAATCTCACACACTAAGTGCCATACATAGCCGAAGCTAT
Found at i:167687891 original size:5 final size:5
Alignment explanation
Indices: 167687883--167687916 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
167687873 AAAATAAAAA
*
167687883 TTATT TTATT TTATT GTATT TTATT TTATT TTAT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTAT
167687917 GATTGGCATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (5 bp):
TTATT
Found at i:167688484 original size:66 final size:66
Alignment explanation
Indices: 167688397--167688529 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
167688387 GGTATGAAAT
*
167688397 TTGGGTCATCAATGAATATGCTGAAAATTTGAAATTTATGGTAGAAAATGAAAAGTTATTCATAG
1 TTGGATCATCAATGAATATGCTGAAAATTTGAAATTTATGGTAGAAAATGAAAAGTTATTCATAG
167688462 A
66 A
*
167688463 TTGGATCATCAATGAATATGCTGAAAATTTGAAATTTATGGTAGAAAATGAAAAGTTATTGATAG
1 TTGGATCATCAATGAATATGCTGAAAATTTGAAATTTATGGTAGAAAATGAAAAGTTATTCATAG
167688528 A
66 A
167688529 T
1 T
167688530 AAAAACTTTT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.41, C:0.05, G:0.20, T:0.34
Consensus pattern (66 bp):
TTGGATCATCAATGAATATGCTGAAAATTTGAAATTTATGGTAGAAAATGAAAAGTTATTCATAG
A
Found at i:167693139 original size:5 final size:5
Alignment explanation
Indices: 167693131--167693164 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
167693121 AAAATAAAAA
*
167693131 TTATT TTATT TTATT GTATT TTATT TTATT TTAT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTAT
167693165 GATTGGCATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (5 bp):
TTATT
Found at i:167693732 original size:66 final size:66
Alignment explanation
Indices: 167693645--167693777 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
167693635 GGTATGAAAT
*
167693645 TTGGGTCATCAATGAATATGCTGAAAATTTGAAATTTATGGTAGAAAATGAAAAGTTATTCATAG
1 TTGGATCATCAATGAATATGCTGAAAATTTGAAATTTATGGTAGAAAATGAAAAGTTATTCATAG
167693710 A
66 A
*
167693711 TTGGATCATCAATGAATATGCTGAAAATTTGAAATTTATGGTAGAAAATGAAAAGTTATTGATAG
1 TTGGATCATCAATGAATATGCTGAAAATTTGAAATTTATGGTAGAAAATGAAAAGTTATTCATAG
167693776 A
66 A
167693777 T
1 T
167693778 AAAAACTTTT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.41, C:0.05, G:0.20, T:0.34
Consensus pattern (66 bp):
TTGGATCATCAATGAATATGCTGAAAATTTGAAATTTATGGTAGAAAATGAAAAGTTATTCATAG
A
Found at i:167695279 original size:25 final size:25
Alignment explanation
Indices: 167695251--167695307 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
167695241 CTAGTTGGAT
* *
167695251 AGTCAATCATACATTTCAGTCGATC
1 AGTCAATCAAACATTTCAGTCGAAC
* * *
167695276 AGTCAATGAAATATTTTAGTCGAAC
1 AGTCAATCAAACATTTCAGTCGAAC
167695301 AGTCAAT
1 AGTCAAT
167695308 ATGATATATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.32
Consensus pattern (25 bp):
AGTCAATCAAACATTTCAGTCGAAC
Found at i:167705288 original size:29 final size:29
Alignment explanation
Indices: 167705198--167705357 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
167705188 ACTCGATTTC
* * **
167705198 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
167705227 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
167705255 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
167705285 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
167705314 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
167705343 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
167705358 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:167713446 original size:29 final size:29
Alignment explanation
Indices: 167713356--167713515 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
167713346 ACTCGATTTC
* * **
167713356 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
167713385 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
167713413 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
167713443 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
167713472 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
167713501 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
167713516 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:167718535 original size:29 final size:29
Alignment explanation
Indices: 167718503--167718604 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
167718493 CCTCGAGCTC
*
167718503 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATTTTTCCAGCAT
167718532 GCACACTTAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATTTTTCCAGCAT
*
167718561 GCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATTTTTCCAGCAT
167718590 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
167718605 ATCTCGTCAC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATTTTTCCAGCAT
Found at i:167718536 original size:58 final size:59
Alignment explanation
Indices: 167718482--167718604 Score: 169
Period size: 58 Copynumber: 2.1 Consensus size: 59
167718472 CCGCACACAC
*
167718482 AGTGCCATACCCCTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATACCCCTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
**** * *
167718540 AGTGCCATATTTTTCCAGCAT-GCACACTCAGTGCCATATTTTTCCAGCATGCACACTT
1 AGTGCCATACCCCTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
167718598 AGTGCCA
1 AGTGCCA
167718605 ATCTCGTCAC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
58 56 0.98
59 1 0.02
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.28
Consensus pattern (59 bp):
AGTGCCATACCCCTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
Found at i:167726842 original size:40 final size:40
Alignment explanation
Indices: 167726785--167726970 Score: 220
Period size: 40 Copynumber: 4.7 Consensus size: 40
167726775 TCGAATGATG
* * * *
167726785 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
167726825 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
167726865 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
167726905 TCCGGGA-TAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCC-GGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
167726946 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
167726971 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
39 3 0.02
40 116 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:167726984 original size:40 final size:40
Alignment explanation
Indices: 167726838--167726989 Score: 116
Period size: 40 Copynumber: 3.8 Consensus size: 40
167726828 GGACTAAGAT
** *
167726838 CCGAAGGCATTTGTGCGAGTTACTA-AATCC-GGACTAAGAT-
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGA-TAAG-TC
** *
167726878 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGATAAGTC
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGATAAGTC
** * *
167726918 CCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
* *
167726958 CCGAAGGTATTTGAACGAG-TAGCTATATCCGG
1 CCGAAGGCATTTGAACGAGCTA-CTATAACCGG
167726990 TTAAACTCCG
Statistics
Matches: 101, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
39 3 0.03
40 93 0.92
41 5 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
Found at i:167726988 original size:80 final size:81
Alignment explanation
Indices: 167726819--167726989 Score: 201
Period size: 80 Copynumber: 2.1 Consensus size: 81
167726809 GTGCTAAGTG
*
167726819 ACTATATCC-GGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAA
1 ACTATATCCGGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAA
**
167726883 GGCATTTGTGCGAGTT
66 GGCATTTGAACGAGTT
* * *
167726899 ACTAAATCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCC
1 ACTATATCCGGGACTAAGAT-CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CC
*
167726960 GAAGGTATTTGAACGAG-T
63 GAAGGCATTTGAACGAGTT
167726978 AGCTATATCCGG
1 A-CTATATCCGG
167726990 TTAAACTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 10
0.81 0.08 0.10
Matches are distributed among these distances:
79 4 0.05
80 69 0.88
81 5 0.06
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (81 bp):
ACTATATCCGGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAA
GGCATTTGAACGAGTT
Found at i:167735001 original size:40 final size:40
Alignment explanation
Indices: 167734944--167735129 Score: 220
Period size: 40 Copynumber: 4.7 Consensus size: 40
167734934 TCGAATGATG
* * * *
167734944 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
167734984 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
167735024 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
167735064 TCCGGGA-TAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCC-GGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
167735105 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
167735130 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
39 3 0.02
40 116 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:167735143 original size:40 final size:40
Alignment explanation
Indices: 167734997--167735148 Score: 116
Period size: 40 Copynumber: 3.8 Consensus size: 40
167734987 GGACTAAGAT
** *
167734997 CCGAAGGCATTTGTGCGAGTTACTA-AATCC-GGACTAAGAT-
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGA-TAAG-TC
** *
167735037 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGATAAGTC
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGATAAGTC
** * *
167735077 CCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
* *
167735117 CCGAAGGTATTTGAACGAG-TAGCTATATCCGG
1 CCGAAGGCATTTGAACGAGCTA-CTATAACCGG
167735149 TTAAACTCCG
Statistics
Matches: 101, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
39 3 0.03
40 93 0.92
41 5 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
Found at i:167735147 original size:80 final size:81
Alignment explanation
Indices: 167734978--167735148 Score: 201
Period size: 80 Copynumber: 2.1 Consensus size: 81
167734968 GTGCTAAGTG
*
167734978 ACTATATCC-GGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAA
1 ACTATATCCGGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAA
**
167735042 GGCATTTGTGCGAGTT
66 GGCATTTGAACGAGTT
* * *
167735058 ACTAAATCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCC
1 ACTATATCCGGGACTAAGAT-CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CC
*
167735119 GAAGGTATTTGAACGAG-T
63 GAAGGCATTTGAACGAGTT
167735137 AGCTATATCCGG
1 A-CTATATCCGG
167735149 TTAAACTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 10
0.81 0.08 0.10
Matches are distributed among these distances:
79 4 0.05
80 69 0.88
81 5 0.06
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (81 bp):
ACTATATCCGGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAA
GGCATTTGAACGAGTT
Found at i:167737113 original size:19 final size:20
Alignment explanation
Indices: 167737089--167737126 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
167737079 GGTACCACCA
167737089 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
167737108 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
167737127 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:167737523 original size:46 final size:45
Alignment explanation
Indices: 167737364--167737523 Score: 162
Period size: 46 Copynumber: 3.5 Consensus size: 45
167737354 GTGAAGTCAA
* * * * *
167737364 ACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAAGTCGG
1 ACTCAACTCAACGAGTTCGGACATTTGCATCCAT-AATGAACTCGG
* * * * *
167737410 ACTCAACTCAACGAGTTTGGATGCCTAGTTACAT-C-TCACGAACTCGG
1 ACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCATAATGAACTCGG
167737457 ACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGG
1 ACTCAACTCAACGAGTTCGGACATTTGCATCCATAA-TGAACTCGG
167737503 ACTCAACTCAACGAGTTCGGA
1 ACTCAACTCAACGAGTTCGGA
167737524 TGCTCAACCA
Statistics
Matches: 92, Mismatches: 15, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
43 6 0.07
44 2 0.02
45 2 0.02
46 47 0.51
47 28 0.30
48 1 0.01
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (45 bp):
ACTCAACTCAACGAGTTCGGACATTTGCATCCATAATGAACTCGG
Found at i:167737983 original size:30 final size:30
Alignment explanation
Indices: 167737949--167738008 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
167737939 ATTTAATACG
167737949 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
167737979 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
167738009 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:167744666 original size:19 final size:20
Alignment explanation
Indices: 167744642--167744679 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
167744632 GGTACCACCA
167744642 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
167744661 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
167744680 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:167745066 original size:93 final size:92
Alignment explanation
Indices: 167744908--167745077 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 92
167744898 CGCCCTAAGT
*
167744908 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
167744973 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* * *
167745000 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAATGAACTCGGACTCAACTCAA
167745065 CGAGTTCGGATGC
65 CGAGTTCGGATGC
167745078 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 27 0.37
93 46 0.63
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:167745067 original size:46 final size:46
Alignment explanation
Indices: 167744903--167745074 Score: 208
Period size: 45 Copynumber: 3.7 Consensus size: 46
167744893 TAACCCGCCC
* * *
167744903 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
167744948 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
167744996 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
167745041 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
167745075 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 33 0.31
46 29 0.27
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:167748692 original size:71 final size:71
Alignment explanation
Indices: 167748606--167748769 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
167748596 CGATTTGTCT
167748606 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
167748671 CTTTCA
66 CTTTCA
167748677 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
167748742 CTTTCA
66 CTTTCA
167748748 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
167748770 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:167748807 original size:71 final size:70
Alignment explanation
Indices: 167748606--167748803 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
167748596 CGATTTGTCT
* * * *
167748606 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
167748671 CTTTCA
65 CTTTCA
* * * *
167748677 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
167748742 CTTTCA
65 CTTTCA
* *
167748748 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
167748804 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:167756198 original size:66 final size:68
Alignment explanation
Indices: 167756120--167756306 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
167756110 TAGTACCACT
*
167756120 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
167756182 CACG
65 CACG
167756186 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
167756251 ATCACG
63 ATCACG
167756257 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
167756307 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:167756231 original size:71 final size:71
Alignment explanation
Indices: 167756143--167756306 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
167756133 CGATTTGTCT
167756143 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
167756208 CTTTCA
66 CTTTCA
167756214 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
167756279 CTTTCA
66 CTTTCA
167756285 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
167756307 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:167756344 original size:71 final size:70
Alignment explanation
Indices: 167756143--167756340 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
167756133 CGATTTGTCT
* * * *
167756143 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
167756208 CTTTCA
65 CTTTCA
* * * *
167756214 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
167756279 CTTTCA
65 CTTTCA
* *
167756285 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
167756341 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:167763157 original size:49 final size:49
Alignment explanation
Indices: 167763085--167763359 Score: 298
Period size: 49 Copynumber: 5.5 Consensus size: 49
167763075 TGAGGTCACG
* **
167763085 TGTGTAATACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATTGGTCGCA
* * * * * * * *
167763134 TGTGTATTACTAAGTGCAAGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAA-T-TGGTCGCA
*
167763185 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATTGGTCGCA
* * * * * *
167763234 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAA-T-TGGTCGCA
* * ** *
167763285 TGTGTAGTACTATGTGCAGGCTACTACATGTACCAAATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATTGGTCGCA
*
167763334 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
167763360 TGCGTACCAG
Statistics
Matches: 183, Mismatches: 39, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
49 103 0.56
50 4 0.02
51 76 0.42
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATTGGTCGCA
Found at i:167763257 original size:100 final size:100
Alignment explanation
Indices: 167763080--167763367 Score: 486
Period size: 100 Copynumber: 2.9 Consensus size: 100
167763070 TATTGTGAGG
* * *
167763080 TCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCATGTGTATTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
*
167763145 AAGTGCAAGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
167763180 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
167763245 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
* * ** *
167763280 TCACGTGTGTAGTACTATGTGCAGGCTACTACATGTACCAAATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
*
167763345 AAGTGTAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
167763368 AGATAGCTTC
Statistics
Matches: 178, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 178 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
Found at i:167765220 original size:19 final size:19
Alignment explanation
Indices: 167765196--167765234 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
167765186 AACCATATCG
167765196 AAACTAGCCTATACATGCC
1 AAACTAGCCTATACATGCC
167765215 AAACTAGCCTATACATGCC
1 AAACTAGCCTATACATGCC
167765234 A
1 A
167765235 CATTACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.31, G:0.10, T:0.21
Consensus pattern (19 bp):
AAACTAGCCTATACATGCC
Found at i:167768786 original size:21 final size:21
Alignment explanation
Indices: 167768732--167768786 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
167768722 AGACCAAGTT
167768732 ACACGACC-GTGTGGCTGAGGG
1 ACAC-ACCTGTGTGGCTGAGGG
* *
167768753 ACACACCTATGTGGTTGAGGG
1 ACACACCTGTGTGGCTGAGGG
**
167768774 ACATGCCTGTGTG
1 ACACACCTGTGTG
167768787 ATAGGGGTAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 3 0.11
21 25 0.89
ACGTcount: A:0.20, C:0.22, G:0.36, T:0.22
Consensus pattern (21 bp):
ACACACCTGTGTGGCTGAGGG
Found at i:167780452 original size:40 final size:39
Alignment explanation
Indices: 167780284--167780454 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
167780274 AGAAATTGAA
* *
167780284 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
167780324 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
167780364 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
167780404 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
167780444 TGATATCCGGG
1 TGATATCCGGG
167780455 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:167785615 original size:22 final size:22
Alignment explanation
Indices: 167785587--167785632 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
167785577 CTTTGTTCCG
167785587 GACTGCCATTGTCAGCAAGTAA
1 GACTGCCATTGTCAGCAAGTAA
167785609 GACTGCCATTGTCAGCAAGTAA
1 GACTGCCATTGTCAGCAAGTAA
167785631 GA
1 GA
167785633 AGGATGCGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.22
Consensus pattern (22 bp):
GACTGCCATTGTCAGCAAGTAA
Found at i:167788437 original size:40 final size:39
Alignment explanation
Indices: 167788269--167788439 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
167788259 AGAAATTGAA
* *
167788269 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
167788309 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
167788349 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
167788389 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
167788429 TGATATCCGGG
1 TGATATCCGGG
167788440 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:167792366 original size:29 final size:29
Alignment explanation
Indices: 167792333--167792434 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
167792323 TGACGAGATC
167792333 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
167792362 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
167792391 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
167792420 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
167792435 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:167800225 original size:29 final size:29
Alignment explanation
Indices: 167800192--167800293 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
167800182 TGACGAGATC
167800192 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
167800221 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
167800250 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
167800279 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
167800294 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:167804962 original size:16 final size:16
Alignment explanation
Indices: 167804928--167804970 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
167804918 TAGCCAAATG
167804928 TTCGGCTTTTCGACAT
1 TTCGGCTTTTCGACAT
* * *
167804944 TTCGACTTTTCGGCTT
1 TTCGGCTTTTCGACAT
*
167804960 TTCGGCATTTC
1 TTCGGCTTTTC
167804971 AGCTTTTGCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.09, C:0.26, G:0.19, T:0.47
Consensus pattern (16 bp):
TTCGGCTTTTCGACAT
Found at i:167806106 original size:16 final size:16
Alignment explanation
Indices: 167806085--167806118 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
167806075 AGAAAATTTG
*
167806085 GGATTTCGGGATTTTT
1 GGATTTCGAGATTTTT
*
167806101 GGATTTTGAGATTTTT
1 GGATTTCGAGATTTTT
167806117 GG
1 GG
167806119 GTTGTTACAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.03, G:0.32, T:0.50
Consensus pattern (16 bp):
GGATTTCGAGATTTTT
Found at i:167806500 original size:22 final size:23
Alignment explanation
Indices: 167806440--167806513 Score: 80
Period size: 22 Copynumber: 3.2 Consensus size: 23
167806430 AGCTCCTCCT
*
167806440 GAGCTGATAACAGTAAGCTCTAAG
1 GAGCTGA-AACAGTAAGCTCTAAC
* * *
167806464 GAGCTGAAACGGTAAGTTCTATC
1 GAGCTGAAACAGTAAGCTCTAAC
167806487 GAGCT-AAACAGTAAGCTC-ATAC
1 GAGCTGAAACAGTAAGCTCTA-AC
167806509 GAGCT
1 GAGCT
167806514 TTGGTGAGTC
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
21 1 0.02
22 17 0.40
23 17 0.40
24 7 0.17
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGCTCTAAC
Found at i:167808611 original size:21 final size:22
Alignment explanation
Indices: 167808581--167808622 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
167808571 TAGTAAAAGT
167808581 CATTTGTCTAACCA-TAAACATG
1 CATTTGTCT-ACCATTAAACATG
167808603 CATTT-TCTACCATTAAACAT
1 CATTTGTCTACCATTAAACAT
167808623 CAAAACACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
21 10 0.53
22 5 0.26
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.36
Consensus pattern (22 bp):
CATTTGTCTACCATTAAACATG
Found at i:167809700 original size:21 final size:21
Alignment explanation
Indices: 167809661--167809703 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
167809651 ATCTGAACAT
167809661 AATTTCAAAATATCATGGTAC
1 AATTTCAAAATATCATGGTAC
167809682 AATTTCAAAATATCATGGTAC
1 AATTTCAAAATATCATGGTAC
167809703 A
1 A
167809704 TACTCATTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33
Consensus pattern (21 bp):
AATTTCAAAATATCATGGTAC
Found at i:167813994 original size:33 final size:32
Alignment explanation
Indices: 167813957--167814020 Score: 76
Period size: 33 Copynumber: 2.0 Consensus size: 32
167813947 CTATGGGACA
167813957 TACTGT-TATCTAAAAAGGTGCTAAGGCCCAGTT
1 TACTGTAT-TCTAAAAAGG-GCTAAGGCCCAGTT
* **
167813990 TACTGTATTCTGAAAAGGGCTTGGGCCCAGT
1 TACTGTATTCTAAAAAGGGCTAAGGCCCAGT
167814021 ACCCGCTGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 11 0.41
33 15 0.56
34 1 0.04
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (32 bp):
TACTGTATTCTAAAAAGGGCTAAGGCCCAGTT
Found at i:167820122 original size:27 final size:26
Alignment explanation
Indices: 167820074--167820133 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
167820064 GCGAGGCGAC
167820074 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGTCACCAGA-A
* *
167820101 CAGATATTGTGGC-TAGTCCACCAGAA
1 CAGATATTGTGACGAAGT-CACCAGAA
*
167820127 CATATAT
1 CAGATAT
167820134 ATGTACATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 10 0.34
27 19 0.66
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (26 bp):
CAGATATTGTGACGAAGTCACCAGAA
Found at i:167831770 original size:40 final size:40
Alignment explanation
Indices: 167831683--167831833 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
167831673 AATTGAATGA
* * * * **
167831683 TATCCGGGCTAAGCCCCGAAGACAATTATGCTAGAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCA-TAC
* * *
167831723 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
167831764 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
167831803 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
167831834 AAATCGTGAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:167831847 original size:40 final size:39
Alignment explanation
Indices: 167831682--167831865 Score: 131
Period size: 40 Copynumber: 4.6 Consensus size: 39
167831672 AAATTGAATG
* *
167831682 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTAG-AAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-T-GCAAATCGT
* * * * * *
167831722 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
167831762 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
167831802 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
167831841 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
167831866 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 25, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
36 1 0.01
37 3 0.03
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:167831848 original size:80 final size:80
Alignment explanation
Indices: 167831680--167831910 Score: 187
Period size: 80 Copynumber: 2.9 Consensus size: 80
167831670 AGAAATTGAA
* * * * *
167831680 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTAGAAATTATAACCGGGTTAAGACCCGAAGG
1 TGATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGAAATTATAACCGGGCTAAGACCCGAAGG
* * *
167831745 CAATTGTGCTAGTGGC
65 CAATTGTGCAAATCGC
* ** * *
167831761 T-ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAGACCCGAAGG
1 TGATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGAAATTATAACCGGGCTAAGACCCGAAGG
*
167831825 CATTTGTGCAAATCG-
65 CAATTGTGCAAATCGC
* * * * * ** ** * *
167831840 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGAAATTATAACCGGGCTAAGACCCGAAGG
*
167831905 CGATTG
65 CAATTG
167831911 ATCGAGTAGC
Statistics
Matches: 118, Mismatches: 30, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
79 4 0.03
80 113 0.96
81 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (80 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGAAATTATAACCGGGCTAAGACCCGAAGGC
AATTGTGCAAATCGC
Found at i:167838502 original size:29 final size:29
Alignment explanation
Indices: 167838468--167838599 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
167838458 TACTCGATTT
** * *
167838468 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
167838497 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
167838526 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
167838555 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
167838584 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
167838600 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:167840442 original size:27 final size:28
Alignment explanation
Indices: 167840412--167840480 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
167840402 ATAGTAAGTC
*
167840412 CGCACACTTAGTGCT-TA-ATAGTCAACT
1 CGCACACTTAGTGCTATACA-AGTAAACT
*
167840439 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAAGTAAACT
167840467 CGCACACTTAGTGC
1 CGCACACTTAGTGC
167840481 CAATCTCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 15 0.39
28 22 0.58
29 1 0.03
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAAGTAAACT
Found at i:167848149 original size:27 final size:28
Alignment explanation
Indices: 167848119--167848187 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
167848109 ATAGTAAGTC
*
167848119 CGCACACTTAGTGCT-TA-ATAGTCAACT
1 CGCACACTTAGTGCTATACA-AGTAAACT
*
167848146 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAAGTAAACT
167848174 CGCACACTTAGTGC
1 CGCACACTTAGTGC
167848188 CAATCTCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 15 0.39
28 22 0.58
29 1 0.03
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAAGTAAACT
Found at i:167850234 original size:19 final size:19
Alignment explanation
Indices: 167850202--167850238 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
167850192 ACTTGGGTTG
*
167850202 AGAATTGGCCAAATGGGCT
1 AGAATGGGCCAAATGGGCT
*
167850221 AGAATGGGCTAAATGGGC
1 AGAATGGGCCAAATGGGC
167850239 CTGATTGGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.14, G:0.35, T:0.19
Consensus pattern (19 bp):
AGAATGGGCCAAATGGGCT
Found at i:167850386 original size:29 final size:29
Alignment explanation
Indices: 167850321--167850404 Score: 96
Period size: 29 Copynumber: 2.9 Consensus size: 29
167850311 GCATGAGTAT
* *
167850321 AATATGATTTGGGCCTAATGGGCCATATG
1 AATATGAATTGGGCCTAATGGGCCATAAG
** * *
167850350 AAGGTGAATTAGGCCTAGTGGGCCATAAG
1 AATATGAATTGGGCCTAATGGGCCATAAG
* *
167850379 AATATGAACTGGGCCAAATGGGCCAT
1 AATATGAATTGGGCCTAATGGGCCAT
167850405 TTGAACAAGA
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (29 bp):
AATATGAATTGGGCCTAATGGGCCATAAG
Found at i:167853890 original size:30 final size:30
Alignment explanation
Indices: 167853856--167854199 Score: 336
Period size: 30 Copynumber: 11.5 Consensus size: 30
167853846 TCATTGGCTA
* *
167853856 ATGAAAAGGGATGG-TGACGACCATCGAATT
1 ATGAAAAGGGATGGCT-TCGACTATCGAATT
* *
167853886 ATGAAAAGGGATGGCTTCGGCTATCAAATT
1 ATGAAAAGGGATGGCTTCGACTATCGAATT
* * *
167853916 ATGAAAATGGATGGCTTTGGCTATCGAATT
1 ATGAAAAGGGATGGCTTCGACTATCGAATT
*
167853946 ATGAAAAGGGATGGCTTCAACTATCGAATT
1 ATGAAAAGGGATGGCTTCGACTATCGAATT
* *
167853976 ATGAAAAGGGATGGCTTCGGCTATTGAATT
1 ATGAAAAGGGATGGCTTCGACTATCGAATT
* * * ** *
167854006 ATGAAAATGGATGTCTTTGGTTATCCAATT
1 ATGAAAAGGGATGGCTTCGACTATCGAATT
* *
167854036 ATGAAAAGGCATGGCTTCGACTATCAAATT
1 ATGAAAAGGGATGGCTTCGACTATCGAATT
*
167854066 ATGGAAAGGGATGGCTTCGACTATCGAATT
1 ATGAAAAGGGATGGCTTCGACTATCGAATT
* * * *
167854096 ATGTAAAGAGATAGCTTCGACTATCAAATT
1 ATGAAAAGGGATGGCTTCGACTATCGAATT
* * * *
167854126 ATGGAAAGGGATGG-TGAT-GACCATCAAAAT
1 ATGAAAAGGGATGGCT--TCGACTATCGAATT
* * * *
167854156 ATGGAAAGGGATAGCTTC-ATCTATCAAACT
1 ATGAAAAGGGATGGCTTCGA-CTATCGAATT
*
167854186 ACGAAAAGGGATGG
1 ATGAAAAGGGATGG
167854200 TAACAACCAT
Statistics
Matches: 263, Mismatches: 45, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
29 3 0.01
30 257 0.98
31 3 0.01
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.27
Consensus pattern (30 bp):
ATGAAAAGGGATGGCTTCGACTATCGAATT
Found at i:167854009 original size:90 final size:90
Alignment explanation
Indices: 167853856--167854139 Score: 374
Period size: 90 Copynumber: 3.2 Consensus size: 90
167853846 TCATTGGCTA
* * *
167853856 ATGAAAAGGGATGG-TGACGACCATCGAATTATGAAAAGGGATGGCTTCGGCTATCAAATTATGA
1 ATGAAAAGGGATGGCT-TCGACTATCGAATTATGAAAAGGGATGGCTTCGGCTATCGAATTATGA
*
167853920 AAATGGATGGCTTTGGCTATCGAATT
65 AAATGGATGGCTTTGGCTATCAAATT
* *
167853946 ATGAAAAGGGATGGCTTCAACTATCGAATTATGAAAAGGGATGGCTTCGGCTATTGAATTATGAA
1 ATGAAAAGGGATGGCTTCGACTATCGAATTATGAAAAGGGATGGCTTCGGCTATCGAATTATGAA
* * *
167854011 AATGGATGTCTTTGGTTATCCAATT
66 AATGGATGGCTTTGGCTATCAAATT
* * * * *
167854036 ATGAAAAGGCATGGCTTCGACTATCAAATTATGGAAAGGGATGGCTTCGACTATCGAATTATGTA
1 ATGAAAAGGGATGGCTTCGACTATCGAATTATGAAAAGGGATGGCTTCGGCTATCGAATTATGAA
* * *
167854101 AA-GAGATAGCTTCGACTATCAAATT
66 AATG-GATGGCTTTGGCTATCAAATT
*
167854126 ATGGAAAGGGATGG
1 ATGAAAAGGGATGG
167854140 TGATGACCAT
Statistics
Matches: 169, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
89 1 0.01
90 167 0.99
91 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (90 bp):
ATGAAAAGGGATGGCTTCGACTATCGAATTATGAAAAGGGATGGCTTCGGCTATCGAATTATGAA
AATGGATGGCTTTGGCTATCAAATT
Found at i:167856930 original size:29 final size:29
Alignment explanation
Indices: 167856887--167856969 Score: 157
Period size: 29 Copynumber: 2.9 Consensus size: 29
167856877 GTATTTTTTT
167856887 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
167856916 TTTCCAGCATACACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
167856945 TTTCCAGCATGCACACTTAGTGCCA
1 TTTCCAGCATGCACACTTAGTGCCA
167856970 ATCTCGTCAC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.30
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Done.