Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 540 of 770
Found at i:167863592 original size:28 final size:26
Alignment explanation
Indices: 167863551--167863638 Score: 131
Period size: 28 Copynumber: 3.3 Consensus size: 26
167863541 TGGAAGAAGC
167863551 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
167863578 GTTTCTGGTGGCTATGCCACGAATATCT
1 G-TTCTGGTGGCTATGCCAC-AATATCT
* *
167863606 GTTCTGGTGGCTCTGTCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
167863632 GTTCTGG
1 GTTCTGG
167863639 CAACCATGCT
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 14 0.25
27 17 0.30
28 26 0.46
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:167865708 original size:43 final size:42
Alignment explanation
Indices: 167865637--167865741 Score: 122
Period size: 43 Copynumber: 2.5 Consensus size: 42
167865627 CCACATCCTG
* *
167865637 GATATGGTCTTACATGTAATATCGTATCGATGCTAATAGCCCA
1 GATATGGTCTTACACGTAATATCATATCGATGC-AATAGCCCA
* * * *
167865680 GCTATGGTCTTACACG-AAGTCTCATATCGATGCCATATCCCA
1 GATATGGTCTTACACGTAA-TATCATATCGATGCAATAGCCCA
*
167865722 GAGATGGTCTTACACGTAAT
1 GATATGGTCTTACACGTAAT
167865742 CTTAGTGACC
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
42 24 0.46
43 28 0.54
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (42 bp):
GATATGGTCTTACACGTAATATCATATCGATGCAATAGCCCA
Found at i:167868847 original size:41 final size:40
Alignment explanation
Indices: 167868790--167868967 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
167868780 CGAATGGTAT
* * *
167868790 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
167868831 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
167868871 TCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
167868911 CCGGGCTAATTCCCGAAGGCAATTGT-CGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
167868950 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
167868968 ACAATCGAGC
Statistics
Matches: 117, Mismatches: 19, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
38 2 0.02
39 23 0.20
40 66 0.56
41 26 0.22
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:167878538 original size:24 final size:23
Alignment explanation
Indices: 167878494--167878538 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
167878484 TAGACAACCC
**
167878494 ATGTTAGAAATTTCGGTATTGAG
1 ATGTTAGAAATTTCGCCATTGAG
*
167878517 ATGTCTAGAACTTTCGCCATTG
1 ATGT-TAGAAATTTCGCCATTG
167878539 TAGCTATGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 4 0.22
24 14 0.78
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (23 bp):
ATGTTAGAAATTTCGCCATTGAG
Found at i:167879657 original size:40 final size:40
Alignment explanation
Indices: 167879565--167879779 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
167879555 TATTCGAATG
167879565 ATATCCGGGCTAAGT-CCGAAGGCA-----GCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
167879599 ATAT-CGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
167879638 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
167879678 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
167879718 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
167879758 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
167879780 TACTTGGGTT
Statistics
Matches: 165, Mismatches: 8, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
33 10 0.06
34 13 0.08
39 28 0.17
40 111 0.67
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:167887924 original size:39 final size:40
Alignment explanation
Indices: 167887745--167887965 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
167887735 TATTCGAATG
*
167887745 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
167887785 ATATTCGGGCTAAGTCCCGAAGGTATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
167887825 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
167887865 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
167887905 ATAT-CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
167887944 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
167887966 TACTTGGGTT
Statistics
Matches: 166, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 46 0.28
40 120 0.72
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:167892309 original size:47 final size:47
Alignment explanation
Indices: 167892240--167892409 Score: 313
Period size: 47 Copynumber: 3.6 Consensus size: 47
167892230 AAAAGCTCGT
167892240 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
167892287 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
167892334 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
167892381 AGTGTATATATGTGGTAAAGCCGAATGGC
1 AGTGTATATATGTGATAAGGCCTAATGGC
167892410 TAATGTGAAA
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 120 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:167892416 original size:47 final size:48
Alignment explanation
Indices: 167892240--167892659 Score: 317
Period size: 48 Copynumber: 8.8 Consensus size: 48
167892230 AAAAGCTCGT
* * * **
167892240 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGA-ATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT-ACATGTGAA
* * * **
167892287 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGA-ATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT-ACATGTGAA
* * * **
167892334 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGA-ATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT-ACATGTGAA
**
167892381 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * **
167892430 A-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * * **
167892478 A-TATGTATATGTGGTAAAGCCGAATGGATAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * * * *
167892526 A-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * * * * *
167892574 A-TGTGTATATGTCGTAAAGCCGAATGGCGAATGTGAAATGCGTATGAGAT
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATAC--ATGTGAA
*
167892624 A-TG-A-ATATGTGGTAAAGCCGAATGGCTAATGAGAAT
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT
167892660 GTTGTAACCT
Statistics
Matches: 342, Mismatches: 26, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
47 128 0.37
48 199 0.58
49 8 0.02
50 7 0.02
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAATACATGTGAA
Found at i:167892446 original size:48 final size:48
Alignment explanation
Indices: 167892387--167892654 Score: 428
Period size: 48 Copynumber: 5.6 Consensus size: 48
167892377 TGAAAGTGTA
167892387 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
167892435 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
167892483 TATATGTGGTAAAGCCGAATGGATAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * * *
167892531 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * * * * *
167892579 TATATGTCGTAAAGCCGAATGGCGAATGTGAAATGCGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
167892627 AATATGTGGTAAAGCCGAATGGCTAATG
1 TATATGTGGTAAAGCCGAATGGCTAATG
167892655 AGAATGTTGT
Statistics
Matches: 205, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 205 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
Found at i:167892753 original size:37 final size:37
Alignment explanation
Indices: 167892703--167892788 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
167892693 GGAAATATAT
*
167892703 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
167892740 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
167892777 TCCGGGTAAGAC
1 TCCGGGTAAGAC
167892789 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:167894751 original size:40 final size:40
Alignment explanation
Indices: 167894685--167895076 Score: 617
Period size: 40 Copynumber: 9.8 Consensus size: 40
167894675 AAGAATTGAG
* * *
167894685 AGTGATATATCCAGG-CTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCC-GGACTAAGTTCCGAAGAGCATTCGTGCT
167894725 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
167894765 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
167894805 AGTGATGTACCCGGATTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
167894845 AGTGATGTATCCGGATTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
167894885 AGTGATGTATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
167894925 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTC-TAGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGT-GCT
167894965 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * * *
167895005 AGTAAGGCAACCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
167895045 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
167895077 ATCATGCTGG
Statistics
Matches: 329, Mismatches: 20, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
39 3 0.01
40 325 0.99
41 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:167898611 original size:47 final size:47
Alignment explanation
Indices: 167898542--167898711 Score: 313
Period size: 47 Copynumber: 3.6 Consensus size: 47
167898532 AACAGCTCGT
167898542 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
167898589 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
167898636 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
167898683 AGTGTATATATGTGGTAAAGCCGAATGGC
1 AGTGTATATATGTGATAAGGCCTAATGGC
167898712 TAATGTGAAA
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 120 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:167898718 original size:47 final size:48
Alignment explanation
Indices: 167898542--167898961 Score: 317
Period size: 48 Copynumber: 8.8 Consensus size: 48
167898532 AACAGCTCGT
* * * **
167898542 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGA-ATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT-ACATGTGAA
* * * **
167898589 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGA-ATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT-ACATGTGAA
* * * **
167898636 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGA-ATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT-ACATGTGAA
**
167898683 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * **
167898732 A-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * * **
167898780 A-TATGTATATGTGGTAAAGCCGAATGGATAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * * * *
167898828 A-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * * * * *
167898876 A-TGTGTATATGTCGTAAAGCCGAATGGCGAATGTGAAATGCGTATGAGAT
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATAC--ATGTGAA
*
167898926 A-TG-A-ATATGTGGTAAAGCCGAATGGCTAATGAGAAT
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT
167898962 GTTGTAACCT
Statistics
Matches: 342, Mismatches: 26, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
47 128 0.37
48 199 0.58
49 8 0.02
50 7 0.02
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAATACATGTGAA
Found at i:167898748 original size:48 final size:48
Alignment explanation
Indices: 167898689--167898956 Score: 428
Period size: 48 Copynumber: 5.6 Consensus size: 48
167898679 TGAAAGTGTA
167898689 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
167898737 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
167898785 TATATGTGGTAAAGCCGAATGGATAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * * *
167898833 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * * * * *
167898881 TATATGTCGTAAAGCCGAATGGCGAATGTGAAATGCGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
167898929 AATATGTGGTAAAGCCGAATGGCTAATG
1 TATATGTGGTAAAGCCGAATGGCTAATG
167898957 AGAATGTTGT
Statistics
Matches: 205, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 205 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
Found at i:167899055 original size:37 final size:37
Alignment explanation
Indices: 167899005--167899090 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
167898995 GGAAATATAT
*
167899005 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
167899042 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
167899079 TCCGGGTAAGAC
1 TCCGGGTAAGAC
167899091 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:167914366 original size:2 final size:2
Alignment explanation
Indices: 167914359--167914386 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
167914349 CGGCTCTAGC
167914359 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
167914387 GTTTGCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:167915191 original size:40 final size:40
Alignment explanation
Indices: 167915090--167915268 Score: 166
Period size: 40 Copynumber: 4.5 Consensus size: 40
167915080 CGAATGGTAT
* * * * *
167915090 CCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
167915131 CCGCG-TCAATTCCCGAAGGCATTTGTGCGAGTTA-TCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAA
* * *
167915171 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
167915211 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
167915251 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
167915269 ACAATCGAGC
Statistics
Matches: 113, Mismatches: 20, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
39 3 0.03
40 86 0.76
41 24 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:167915225 original size:80 final size:81
Alignment explanation
Indices: 167915090--167915240 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 81
167915080 CGAATGGTAT
* * * *
167915090 CCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAGTGACTAAATCCGCGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGCGTCAATTCCCGAAGGCAATT
167915155 GTGCGAGTTATCAAAA
66 GTGCGAGTTATCAAAA
* * * *
167915171 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCG-GGCTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGCGTC-AATTCCCGAAGGCAAT
167915234 TGTGCGA
65 TGTGCGA
167915241 ATCACTATAA
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
79 2 0.03
80 35 0.57
81 24 0.39
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGCGTCAATTCCCGAAGGCAATT
GTGCGAGTTATCAAAA
Found at i:167915253 original size:80 final size:80
Alignment explanation
Indices: 167915090--167915268 Score: 193
Period size: 80 Copynumber: 2.2 Consensus size: 80
167915080 CGAATGGTAT
* * * *
167915090 CCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAGTGACTAAATCCGCGTCAATTCCCGAAGGCATTT
1 CCGGG-TAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGCGTCAATTCCCGAAGGCAATT
* *
167915155 GTGCGAGTTATCAAAA
65 GTGCGAATCATCAAAA
* * *
167915171 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCG-GGCTAATTCCCGAAGGCAAT
1 CCGGG-TAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGCGTC-AATTCCCGAAGGCAAT
*
167915234 TGTGCGAATCA-CTATAA
64 TGTGCGAATCATC-AAAA
*
167915251 CCGGGCAATGTCCCGAAG
1 CCGGGTAA-GTCCCGAAG
167915269 ACAATCGAGC
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.06
80 54 0.65
81 24 0.29
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
CCGGGTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGCGTCAATTCCCGAAGGCAATTG
TGCGAATCATCAAAA
Found at i:167926767 original size:39 final size:40
Alignment explanation
Indices: 167926594--167926799 Score: 303
Period size: 40 Copynumber: 5.2 Consensus size: 40
167926584 TGAATGATAC
* *
167926594 CCGGGCTAAG-CCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
167926633 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
167926673 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
167926713 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA-
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
167926752 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
167926792 CC-GGCTAA
1 CCGGGCTAA
167926800 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 10, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
39 48 0.31
40 104 0.68
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:167934710 original size:40 final size:40
Alignment explanation
Indices: 167934654--167934860 Score: 287
Period size: 40 Copynumber: 5.2 Consensus size: 40
167934644 TGAATGATAC
* *
167934654 CCGGGCTAAG-CTCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGAC-CCGAAGGCATTTGTGCGAGTTG-TTATAT
167934694 CCGGGCTAAGACCCGAAGGCATTT-TGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
167934733 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
167934773 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
167934813 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
167934853 CC-GGCTAA
1 CCGGGCTAA
167934861 ATTCCGAAGA
Statistics
Matches: 153, Mismatches: 11, Indels: 7
0.89 0.06 0.04
Matches are distributed among these distances:
39 40 0.26
40 112 0.73
41 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:167934869 original size:79 final size:79
Alignment explanation
Indices: 167934650--167934860 Score: 309
Period size: 79 Copynumber: 2.7 Consensus size: 79
167934640 CATTTGAATG
* *
167934650 ATACCCGGGCTAAG-CTCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC
1 ATACCCGGGCTAAGAC-CCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGC
*
167934714 ATTTTGCGAGTTGTT
65 ATTTTGCGAGTTGCT
* * *
167934729 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
167934794 TTTGTGCGAGTTGCT
66 TTT-TGCGAGTTGCT
* * *
167934809 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAA
167934861 ATTCCGAAGA
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
79 67 0.57
80 51 0.43
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
TTTTGCGAGTTGCT
Found at i:167936538 original size:40 final size:40
Alignment explanation
Indices: 167936480--167936657 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
167936470 CGGATGATAA
* * * *
167936480 CCGGGCTATGTCCTGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
167936520 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
167936560 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
167936600 CCGGGCTAAGTCCTGAAGGCATTTGAGCGAG-TAGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
167936640 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
167936658 TACTTGGTTG
Statistics
Matches: 125, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
39 16 0.13
40 108 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:167944502 original size:40 final size:40
Alignment explanation
Indices: 167944443--167944620 Score: 254
Period size: 40 Copynumber: 4.5 Consensus size: 40
167944433 CGGATGATAA
* * *
167944443 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
167944483 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
167944523 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
167944563 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
167944603 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
167944621 TACTTGGTTG
Statistics
Matches: 128, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
39 17 0.13
40 110 0.86
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:167952442 original size:38 final size:39
Alignment explanation
Indices: 167952388--167952520 Score: 198
Period size: 38 Copynumber: 3.4 Consensus size: 39
167952378 ATGATAACCG
167952388 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
167952427 GG-TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
167952465 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATGTCC
1 -GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
*
167952505 GGCTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
167952521 TACTTGGTTG
Statistics
Matches: 86, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
38 35 0.41
39 21 0.24
40 30 0.35
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.24
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:167963816 original size:40 final size:40
Alignment explanation
Indices: 167963708--167963817 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
167963698 ATTGAATGAT
* * * * *
167963708 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
167963748 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
167963788 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
167963818 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:167963832 original size:40 final size:39
Alignment explanation
Indices: 167963708--167963856 Score: 124
Period size: 40 Copynumber: 3.8 Consensus size: 39
167963698 ATTGAATGAT
* * * * * * *
167963708 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
167963748 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
167963788 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
167963828 ATCCGGGTTAAG-TCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
167963857 GGGTTACCAN
Statistics
Matches: 91, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
39 15 0.16
40 70 0.77
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:167966642 original size:38 final size:38
Alignment explanation
Indices: 167966548--167966660 Score: 138
Period size: 38 Copynumber: 2.9 Consensus size: 38
167966538 ATGCTGGAAA
* *
167966548 TTATACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTAT-CCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTGGC
* *
167966588 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG-
1 T-TATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTGGC
167966627 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 TTATCCGGGCTAAGACCCGAAGGCA-TTGTGCAA
167966661 ATCGTGATAT
Statistics
Matches: 65, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
38 29 0.45
39 6 0.09
40 28 0.43
41 2 0.03
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (38 bp):
TTATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTGGC
Found at i:167974607 original size:40 final size:40
Alignment explanation
Indices: 167974497--167974608 Score: 152
Period size: 40 Copynumber: 2.8 Consensus size: 40
167974487 TGAAATTTAT
* * * * *
167974497 ATCCGGGTTAAGACCCGAAGGAAATTGTGCTAGTAGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGCTAA
* * *
167974537 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGCTAA
167974577 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
167974609 ATCGTGATAT
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGCTAA
Found at i:167974621 original size:40 final size:39
Alignment explanation
Indices: 167974453--167974623 Score: 150
Period size: 40 Copynumber: 4.3 Consensus size: 39
167974443 AGAAATTGAA
* *
167974453 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * * *
167974493 TTATATCCGGGTTAAGACCCGAAGGAAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
167974533 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
167974573 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
167974613 TGATATCCGGG
1 TGATATCCGGG
167974624 TAAAGTCCCG
Statistics
Matches: 105, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 93 0.89
41 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:167979636 original size:15 final size:17
Alignment explanation
Indices: 167979606--167979637 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
167979596 TTGATACTTG
167979606 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
167979623 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
167979638 AATTAAGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:167980750 original size:45 final size:46
Alignment explanation
Indices: 167980665--167980752 Score: 115
Period size: 45 Copynumber: 1.9 Consensus size: 46
167980655 TGAGCCATGT
* *
167980665 AATAGGAAGCTTATCCGGGCTAAACAGGAAACTCATAAGAGTTTAG
1 AATAGGAAGCTTATCCGAGCTAAACAGGAAACTCAGAAGAGTTTAG
* * * *
167980711 AATAGGAAGCTTAT-TGAGCTTAACAGGTAACTCCGAAGAGTT
1 AATAGGAAGCTTATCCGAGCTAAACAGGAAACTCAGAAGAGTT
167980753 ATTATTAGAG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
45 22 0.61
46 14 0.39
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (46 bp):
AATAGGAAGCTTATCCGAGCTAAACAGGAAACTCAGAAGAGTTTAG
Found at i:167984980 original size:27 final size:27
Alignment explanation
Indices: 167984837--167984981 Score: 166
Period size: 27 Copynumber: 5.4 Consensus size: 27
167984827 TGGATAAGTT
** *
167984837 GTAGAATTACTAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
167984864 GTAGAATTATCGAAATACCC-TATAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* * *
167984890 ATAGAATTATCGAAATGCCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
167984917 GTAGAATTAGCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
167984944 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
167984971 GTAAAATTACC
1 GTAGAATTACC
167984982 ATTTTGCCCC
Statistics
Matches: 101, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 23 0.23
27 78 0.77
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAGG
Found at i:167989380 original size:27 final size:27
Alignment explanation
Indices: 167989342--167989459 Score: 173
Period size: 27 Copynumber: 4.4 Consensus size: 27
167989332 GGATAAGTTG
167989342 TAGAATTACCGAAATACCCTTGTAGGA
1 TAGAATTACCGAAATACCCTTGTAGGA
*
167989369 TAGAATTACCGAAATACCCTTGTAGGG
1 TAGAATTACCGAAATACCCTTGTAGGA
* * *
167989396 TAGAAATACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCTTGTAGGA
* *
167989423 TAGAATTACCGAGATACCCTTGTGGGA
1 TAGAATTACCGAAATACCCTTGTAGGA
*
167989450 TAAAATTACC
1 TAGAATTACC
167989460 ATTTTGCCCC
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCTTGTAGGA
Found at i:167992024 original size:40 final size:39
Alignment explanation
Indices: 167991856--167992026 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
167991846 AGAAATTGAA
* *
167991856 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
167991896 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
167991936 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
167991976 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
167992016 TGATATCCGGG
1 TGATATCCGGG
167992027 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:168000059 original size:40 final size:39
Alignment explanation
Indices: 167999891--168000061 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
167999881 AGAAATTGAA
* *
167999891 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
167999931 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
167999971 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
168000011 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
168000051 TGATATCCGGG
1 TGATATCCGGG
168000062 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:168003895 original size:423 final size:429
Alignment explanation
Indices: 168002834--168004024 Score: 1496
Period size: 423 Copynumber: 2.7 Consensus size: 429
168002824 TTATATACAA
* * * *
168002834 ATATTACATTTTATAATAATTCATCAAGACTAAACATTA-TATACGCGCTTTAATAACTCGCAAG
1 ATATTA-ATTTTACAATAATTCATCAAGGCTAAACA-TAGTATACGTGCTTTAATAACTCACAAG
* *
168002898 TGTAGCTTATATATTTACATGCATTCACAAGTTAAATGAAAACGACCTAA-ACCAAAATTACATA
64 TATAGCTTATATATTCACATGCATTCACAAGTTAAATGAAAACGACC-AAGACCAAAATTACATA
* * *
168002962 TGCAATTTACTATGAGAACAATACTAACATTTCAATGAAACTTAAATCAACTCATTTAACATATT
128 CGTAATTTACTATGAGAA-AGTACTAACATTTC-ATGAAACTTAAATCAACTCATTTAACATATT
* * ** * * * *
168003027 ATTTAGACGTTTATGCATCCATCTCACT-TCCTATTATCACAATAAGTAAAATCACATTTAAACA
191 ATTTACATGTTTATAAATCCATCTCA-TATCATATTATCACAATAAATATAATCACATTT-AACG
* * *
168003091 ATAATTTGACACTTGAGGCTATGAAACATAAAAGTGGGCTCCATCACCACACATTGGGTACACGG
254 ATAATTTGACACTTGAGGCTATGAAACATAAAAGTGGGCTCTATCACCACACATCGGATACACGG
168003156 ATATCCAACACACCAATTGACTTATAGAGTCAATCATAACAAAAAGTAACATATTAATGTTTCAT
319 A-ATCC-ACACA-CAATTGACTTATAGAGTCAATCATAACAAAAAGTAACATATTAATGTTTCAT
* *
168003221 TAAATCATAAAACTAGCATATACTCTTACTTGCTATTACACTTAACTTG
381 TAAATCATAAAACTAGCATATACTCTTACATGCAATTACACTTAACTTG
*
168003270 CTTATATATAAATAATTAATTTTACAATAATTTATCAAGGCTAAACATAGTATACGTGCTTTAAT
1 -----------AT-ATTAATTTTACAATAATTCATCAAGGCTAAACATAGTATACGTGCTTTAAT
* * * * *
168003335 AACTCACAAGTAT-GGTTATATATTCACTTGCATTCACAAGTTAAATGAAAATGACCTAGACCAC
54 AACTCACAAGTATAGCTTATATATTCACATGCATTCACAAGTTAAATGAAAACGACCAAGACCAA
* * * *
168003399 AATTACATGCGTAATTTACTATGAGAACGTACTAACACTTTCATGAATCTTAAATAAACTCATTT
119 AATTACATACGTAATTTACTATGAGAAAGTACTAACA-TTTCATGAAACTTAAATCAACTCATTT
* * *
168003464 ACCATATTATTTACTTGCTTATAAATCCATCTCATATCATATTATCACAATAAATATAATCACAT
183 AACATATTATTTACATGTTTATAAATCCATCTCATATCATATTATCACAATAAATATAATCACAT
* *
168003529 TTAACTGACAATTTGACACTTGAGGCTATGAGACATAAAAGTGGGCTCTATCACCACACATCGGA
248 TTAAC-GATAATTTGACACTTGAGGCTATGAAACATAAAAGTGGGCTCTATCACCACACATCGGA
* * * * * *
168003594 TACATGG-AT-C-TACA-AATTGACTTATAGAGTCGATCATATCCCTAAAA-TAACAT-TTCACT
312 TACACGGAATCCACACACAATTGACTTATAGAGTCAATCATA--ACAAAAAGTAACATATT-AAT
168003653 -TTTCATTAAATCATAAAACTAGCATATACTCTTACATGCAATTACA-TTCAACTTG
374 GTTTCATTAAATCATAAAACTAGCATATACTCTTACATGCAATTACACTT-AACTTG
* * *
168003708 -T-TT-A-TTTACAATAATTCATCAAGGCTAAACATCGTATACGTGCTTTAATAACTCAAAAGTC
1 ATATTAATTTTACAATAATTCATCAAGGCTAAACATAGTATACGTGCTTTAATAACTCACAAGTA
* *
168003769 TAGCTTATATATTCACATGCATTCACAAGTTAAATGAAAACGACCAAGACCATAGTTACATACGT
66 TAGCTTATATATTCACATGCATTCACAAGTTAAATGAAAACGACCAAGACCAAAATTACATACGT
* * * *
168003834 AATTTACTATGAGAATGTACTAACATTTTCATGAAGCTTAAATCAACTTATTTAGCATATTATTT
131 AATTTACTATGAGAAAGTACTAACA-TTTCATGAAACTTAAATCAACTCATTTAACATATTATTT
* *
168003899 ACATGTTTATAAATCCATCTCACATCATATTATTACAATAAATATAATCACATTTAACCGATAAT
195 ACATGTTTATAAATCCATCTCATATCATATTATCACAATAAATATAATCACATTTAA-CGATAAT
* *
168003964 TTGACACTTGAGGCTATGAAACATAAAAATGGGCTCTATCACCACACATCGGATACGCGGA
259 TTGACACTTGAGGCTATGAAACATAAAAGTGGGCTCTATCACCACACATCGGATACACGGA
168004025 TCTCAAACAC
Statistics
Matches: 662, Mismatches: 69, Indels: 49
0.85 0.09 0.06
Matches are distributed among these distances:
422 54 0.08
423 230 0.35
424 3 0.00
426 1 0.00
437 2 0.00
438 75 0.11
439 8 0.01
440 8 0.01
442 1 0.00
443 2 0.00
444 4 0.01
445 144 0.22
446 73 0.11
447 53 0.08
448 4 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (429 bp):
ATATTAATTTTACAATAATTCATCAAGGCTAAACATAGTATACGTGCTTTAATAACTCACAAGTA
TAGCTTATATATTCACATGCATTCACAAGTTAAATGAAAACGACCAAGACCAAAATTACATACGT
AATTTACTATGAGAAAGTACTAACATTTCATGAAACTTAAATCAACTCATTTAACATATTATTTA
CATGTTTATAAATCCATCTCATATCATATTATCACAATAAATATAATCACATTTAACGATAATTT
GACACTTGAGGCTATGAAACATAAAAGTGGGCTCTATCACCACACATCGGATACACGGAATCCAC
ACACAATTGACTTATAGAGTCAATCATAACAAAAAGTAACATATTAATGTTTCATTAAATCATAA
AACTAGCATATACTCTTACATGCAATTACACTTAACTTG
Found at i:168010114 original size:99 final size:97
Alignment explanation
Indices: 168009946--168010126 Score: 258
Period size: 99 Copynumber: 1.8 Consensus size: 97
168009936 TGATGTTGAT
* * *
168009946 GCCATGTCCCAGACATGGTCTTACATTGGCTCATCCATCAAGTAGATGCCATGTCCTAGACATGG
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTAGATGCCATGTCCCAGACATGG
168010011 TCTTACACTGAC-TATCGAAATCGAGGCCGAC
66 TCTTACACTGACATATCGAAATCGAGGCCGAC
** *
168010042 GCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACATATCTGTGTCGATGCCATGTCCCAGAC
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCATC-C--ATC-AAGTAGATGCCATGTCCCAGAC
168010106 ATGGTCTTACACTGACATATC
62 ATGGTCTTACACTGACATATC
168010127 TCGTAGTCAA
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
95 2 0.03
96 31 0.42
98 3 0.04
99 34 0.46
100 4 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (97 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTAGATGCCATGTCCCAGACATGG
TCTTACACTGACATATCGAAATCGAGGCCGAC
Found at i:168010146 original size:45 final size:45
Alignment explanation
Indices: 168009944--168010163 Score: 146
Period size: 50 Copynumber: 4.7 Consensus size: 45
168009934 TATGATGTTG
* * **
168009944 ATGCCATGTCCCAGACATGGTCTTACATTGGCTCATCCATC-AAGT-A
1 ATGCCATGTCCCAGACATGGTCTTACACT-GCACAT--ATCTGTGTCA
* * * * *
168009990 GATGCCATGTCCTAGACATGGTCTTACACTGACTATCGAAATC-GAGGCCG
1 -ATGCCATGTCCCAGACATGGTCTTACACTG-C-A-C-ATATCTG-TGTCA
* *
168010040 ACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-G----CACATATCTGTGTCA
168010090 ATGCCATGTCCCAGACATGGTCTTACACTG-ACATATCTCGTAGTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGCACATATCT-GT-GTCA
*
168010136 ATG-CATGTCCCAAACAT-GTCTTACACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTG
168010164 GCTTACATCT
Statistics
Matches: 143, Mismatches: 17, Indels: 29
0.76 0.09 0.15
Matches are distributed among these distances:
44 19 0.13
45 15 0.10
46 7 0.05
47 28 0.20
48 3 0.02
49 30 0.21
50 37 0.26
51 2 0.01
52 1 0.01
53 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (45 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGCACATATCTGTGTCA
Found at i:168010199 original size:46 final size:50
Alignment explanation
Indices: 168009943--168010208 Score: 192
Period size: 46 Copynumber: 5.6 Consensus size: 50
168009933 GTATGATGTT
* * * **
168009943 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCATC-CATC---AAGTA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCACATCTTGAGGCC
* *
168009990 GATGCCATGTCCTAGACATGGTCTTACACTGACTATCGAAATC--GAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATC-ACATCTTGAGGCC
* * * * *
168010039 GACGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATCTG-TGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCACATCT-TGAGGCC
* *
168010089 GATGCCATGTCCCAGACATGGTCTTACACTGAC-AT---ATCTCGTA-GTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCACATCTTG-AGGCC
* * *
168010135 AATG-CATGTCCCAAACAT-GTCTTACACTGGCT-T-ACATCTTGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCACATCTTGAGGCC
*
168010181 GATG-CATGTCCTAGACAT-GTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
168010209 AGCTCTGTCT
Statistics
Matches: 179, Mismatches: 26, Indels: 29
0.76 0.11 0.12
Matches are distributed among these distances:
44 13 0.07
45 15 0.08
46 44 0.25
47 31 0.17
48 7 0.04
49 35 0.20
50 32 0.18
51 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (50 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTATCACATCTTGAGGCC
Found at i:168012750 original size:40 final size:40
Alignment explanation
Indices: 168012706--168012833 Score: 186
Period size: 40 Copynumber: 3.1 Consensus size: 40
168012696 TTTAAGTCCG
*
168012706 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACTAAGCCTGCGGGATTTAACCCGG--AT
*
168012748 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTACCAGCACTAAGCCTGCGGGATTTAACCCGGAT
* *
168012788 ATATATTACCAACA-TGAAGCCTGCGGGATTTAACTCGGAT
1 ATATATTACCAGCACT-AAGCCTGCGGGATTTAACCCGGAT
168012828 ATATAT
1 ATATAT
168012834 ATTATATCGA
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
40 44 0.55
42 36 0.45
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (40 bp):
ATATATTACCAGCACTAAGCCTGCGGGATTTAACCCGGAT
Found at i:168012768 original size:42 final size:42
Alignment explanation
Indices: 168012706--168012837 Score: 196
Period size: 42 Copynumber: 3.2 Consensus size: 42
168012696 TTTAAGTCCG
* *
168012706 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATAT
168012748 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGG--AT
1 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATAT
* ** *
168012788 ATATATTACCAACATGAAGCCTGCGGGATTTAACTCGGATAT
1 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATAT
168012830 ATATATTA
1 ATATATTA
168012838 TATCGAGAGC
Statistics
Matches: 82, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 36 0.44
42 46 0.56
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (42 bp):
ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATAT
Found at i:168020399 original size:40 final size:40
Alignment explanation
Indices: 168020355--168020482 Score: 186
Period size: 40 Copynumber: 3.1 Consensus size: 40
168020345 TTAAGTCCGA
*
168020355 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCTGGATAT
1 ATATATTACCAGCACTAAGCCTGCGGGATTTAACCTGG--AT
* *
168020397 ATATATTACCAGCACAAAGCCTGCAGGATTTAACCTGGAT
1 ATATATTACCAGCACTAAGCCTGCGGGATTTAACCTGGAT
*
168020437 ATATATTACCAGCA-TGAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTACCAGCACT-AAGCCTGCGGGATTTAACCTGGAT
168020477 ATATAT
1 ATATAT
168020483 ATTATATCGA
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 44 0.56
42 35 0.44
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.27
Consensus pattern (40 bp):
ATATATTACCAGCACTAAGCCTGCGGGATTTAACCTGGAT
Found at i:168020417 original size:42 final size:42
Alignment explanation
Indices: 168020355--168020486 Score: 196
Period size: 42 Copynumber: 3.2 Consensus size: 42
168020345 TTAAGTCCGA
* *
168020355 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCTGGATAT
1 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCTGGATAT
*
168020397 ATATATTACCAGCACAAAGCCTGCAGGATTTAACCTGG--AT
1 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCTGGATAT
** *
168020437 ATATATTACCAGCATGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCTGGATAT
168020479 ATATATTA
1 ATATATTA
168020487 TATCGAGAGC
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
40 36 0.44
42 45 0.56
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.27
Consensus pattern (42 bp):
ATATATTACCAGCACAAAGCCTGCGGGATTTAACCTGGATAT
Found at i:168023534 original size:15 final size:15
Alignment explanation
Indices: 168023502--168023544 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
168023492 TGCAGTGAAC
168023502 TTCTTCTCTTTTTCT
1 TTCTTCTCTTTTTCT
168023517 TTCTT-TC-TTTTCT
1 TTCTTCTCTTTTTCT
168023530 TT-TTCTCTGTTTTCT
1 TTCTTCTCT-TTTTCT
168023545 AATTTGCATG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 2 0.08
13 10 0.40
14 2 0.08
15 11 0.44
ACGTcount: A:0.00, C:0.23, G:0.02, T:0.74
Consensus pattern (15 bp):
TTCTTCTCTTTTTCT
Found at i:168024506 original size:13 final size:13
Alignment explanation
Indices: 168024472--168024523 Score: 61
Period size: 13 Copynumber: 4.0 Consensus size: 13
168024462 TATAGGGATT
*
168024472 AAATTATAT-TAA
1 AAATTAAATATAA
168024484 AAATTAAAATATAA
1 AAATT-AAATATAA
*
168024498 AAATTAAATATCA
1 AAATTAAATATAA
*
168024511 AATTTAAATATAA
1 AAATTAAATATAA
168024524 TACAGACTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
12 5 0.15
13 21 0.62
14 8 0.24
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (13 bp):
AAATTAAATATAA
Found at i:168025112 original size:2 final size:2
Alignment explanation
Indices: 168025105--168025137 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
168025095 ATAATCAAAT
168025105 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
168025138 AGGTCTAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:168030978 original size:57 final size:57
Alignment explanation
Indices: 168030899--168031029 Score: 142
Period size: 57 Copynumber: 2.3 Consensus size: 57
168030889 GTTATGGTTT
* *
168030899 GATTTAGCCTGGA-TGGGTAATCCAGA-TCAAGCTCT-TTAGAGCATATGTCATAAAAAG
1 GATTTAGCCTGGACT-GGCAATCCAGACT-AAGCTCTATT-GAGCATATATCATAAAAAG
* * ** * *
168030956 GATTTAGCCTGGACTGGCAATCCTGACTAAGCTCTATTGAGTATATATTGTAGACAG
1 GATTTAGCCTGGACTGGCAATCCAGACTAAGCTCTATTGAGCATATATCATAAAAAG
168031013 GATTTAGCCTGGACTGG
1 GATTTAGCCTGGACTGG
168031030 TATCTTGTTG
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
57 59 0.94
58 4 0.06
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (57 bp):
GATTTAGCCTGGACTGGCAATCCAGACTAAGCTCTATTGAGCATATATCATAAAAAG
Found at i:168031884 original size:21 final size:21
Alignment explanation
Indices: 168031860--168031901 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
168031850 TCATATTGGC
168031860 ATGTAAATGTAAATGATTGTT
1 ATGTAAATGTAAATGATTGTT
168031881 ATGTAAATGTAAATGATTGTT
1 ATGTAAATGTAAATGATTGTT
168031902 GTAATCTAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (21 bp):
ATGTAAATGTAAATGATTGTT
Found at i:168034308 original size:21 final size:21
Alignment explanation
Indices: 168034258--168034309 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
168034248 ATTCAATGAC
*
168034258 TTTCATTTTCCCTTAATCTAA
1 TTTCATTTTCCCTCAATCTAA
*
168034279 TTGCATTTTCCCTCAATCTAA
1 TTTCATTTTCCCTCAATCTAA
*
168034300 TTTCGTTTTC
1 TTTCATTTTC
168034310 TTTGGTTCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.19, C:0.25, G:0.04, T:0.52
Consensus pattern (21 bp):
TTTCATTTTCCCTCAATCTAA
Found at i:168035633 original size:29 final size:29
Alignment explanation
Indices: 168035580--168035868 Score: 250
Period size: 29 Copynumber: 10.0 Consensus size: 29
168035570 TGCAATCTAA
** * *
168035580 GGAAGCCTTTGTGGAAATCTATATTAATT
1 GGAAGCCTTTGTGGCTATCTCTATTAAAT
* *
168035609 GGAAGCCTTTATGGCTATCCCTATTAAAT
1 GGAAGCCTTTGTGGCTATCTCTATTAAAT
*
168035638 GGAAGCCTTTGTGGCTATCTCTGTTAAAT
1 GGAAGCCTTTGTGGCTATCTCTATTAAAT
* * *
168035667 GGAAGCCTTTGTGGGTAATCTCTGTTAAAG
1 GGAAGCCTTTGTGGCT-ATCTCTATTAAAT
*
168035697 GGAAGCCTTTGTGGCTAAACTCTATTAAA-
1 GGAAGCCTTTGTGGCT-ATCTCTATTAAAT
* * *
168035726 GGAATCCTTTGTGGCTAATCTTTGTTAAA-
1 GGAAGCCTTTGTGGCT-ATCTCTATTAAAT
*
168035755 GGAATCCTTTGTGGCTAATCTCTATTAAA-
1 GGAAGCCTTTGTGGCT-ATCTCTATTAAAT
* * *
168035784 GGAAGCCTTTGTAGG-TAATCTTTGTTCAA-
1 GGAAGCCTTTGT-GGCT-ATCTCTATTAAAT
* * *
168035813 GGAAGCTTTTGTGGCGATCTTTATTAAA-
1 GGAAGCCTTTGTGGCTATCTCTATTAAAT
* * *
168035841 -GATAGCCTTTATGGCTATATCTGTTAAA
1 GGA-AGCCTTTGTGGCTATCTCTATTAAA
168035869 AGGTCACCTA
Statistics
Matches: 222, Mismatches: 34, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
27 2 0.01
28 31 0.14
29 149 0.67
30 40 0.18
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (29 bp):
GGAAGCCTTTGTGGCTATCTCTATTAAAT
Found at i:168035650 original size:58 final size:58
Alignment explanation
Indices: 168035578--168035868 Score: 292
Period size: 58 Copynumber: 5.0 Consensus size: 58
168035568 GATGCAATCT
* * * * *
168035578 AAGGAAGCCTTTGTGG-AAATCTATATTAATTGGAAGCCTTTATGGCT-ATCCCTATTA
1 AAGGAAGCCTTTGTGGCAAATCTCTATTAA-AGGAAGCCTTTGTGGCTAATCTCTGTTA
* * *
168035635 AATGGAAGCCTTTGTGGC-TATCTCTGTTAAATGGAAGCCTTTGTGGGTAATCTCTGTTA
1 AA-GGAAGCCTTTGTGGCAAATCTCTATTAAA-GGAAGCCTTTGTGGCTAATCTCTGTTA
* *
168035694 AAGGGAAGCCTTTGTGGCTAAA-CTCTATTAAAGGAATCCTTTGTGGCTAATCTTTGTTA
1 AA-GGAAGCCTTTGTGGC-AAATCTCTATTAAAGGAAGCCTTTGTGGCTAATCTCTGTTA
* * * *
168035753 AAGGAATCCTTTGTGGCTAATCTCTATTAAAGGAAGCCTTTGTAGG-TAATCTTTGTTC
1 AAGGAAGCCTTTGTGGCAAATCTCTATTAAAGGAAGCCTTTGT-GGCTAATCTCTGTTA
* * * * *
168035811 AAGGAAGCTTTTGTGGC-GATCTTTATTAAA-GATAGCCTTTATGGCT-ATATCTGTTA
1 AAGGAAGCCTTTGTGGCAAATCTCTATTAAAGGA-AGCCTTTGTGGCTAATCTCTGTTA
168035867 AA
1 AA
168035869 AGGTCACCTA
Statistics
Matches: 198, Mismatches: 26, Indels: 21
0.81 0.11 0.09
Matches are distributed among these distances:
56 13 0.07
57 24 0.12
58 98 0.49
59 53 0.27
60 9 0.05
61 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.37
Consensus pattern (58 bp):
AAGGAAGCCTTTGTGGCAAATCTCTATTAAAGGAAGCCTTTGTGGCTAATCTCTGTTA
Found at i:168035705 original size:88 final size:87
Alignment explanation
Indices: 168035578--168035793 Score: 276
Period size: 88 Copynumber: 2.5 Consensus size: 87
168035568 GATGCAATCT
* * * *
168035578 AAGGAAGCCTTTGT-GGAAATCTATATTAATTGGAAGCCTTTATGGCT-ATCCCTATTAAATGGA
1 AAGGAAGCCTTTGTGGGTAATCTCTATTAA-AGGAAGCCTTTATGGCTAAACCCTATTAAA-GGA
168035641 AGCCTTTGTGGCT-ATCTCTGTTA
64 AGCCTTTGTGGCTAATCTCTGTTA
* * *
168035664 AATGGAAGCCTTTGTGGGTAATCTCTGTTAAAGGGAAGCCTTTGTGGCTAAACTCTATTAAAGGA
1 AA-GGAAGCCTTTGTGGGTAATCTCTATTAAA-GGAAGCCTTTATGGCTAAACCCTATTAAAGGA
* *
168035729 ATCCTTTGTGGCTAATCTTTGTTA
64 AGCCTTTGTGGCTAATCTCTGTTA
* *
168035753 AAGGAATCCTTTGTGGCTAATCTCTATTAAAGGAAGCCTTT
1 AAGGAAGCCTTTGTGGGTAATCTCTATTAAAGGAAGCCTTT
168035794 GTAGGTAATC
Statistics
Matches: 113, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
86 2 0.02
87 22 0.19
88 68 0.60
89 21 0.19
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.36
Consensus pattern (87 bp):
AAGGAAGCCTTTGTGGGTAATCTCTATTAAAGGAAGCCTTTATGGCTAAACCCTATTAAAGGAAG
CCTTTGTGGCTAATCTCTGTTA
Found at i:168035788 original size:117 final size:117
Alignment explanation
Indices: 168035578--168035858 Score: 326
Period size: 117 Copynumber: 2.4 Consensus size: 117
168035568 GATGCAATCT
*
168035578 AAGGAAGCCTTTGTGG-AAATCTATATTAATTGGAAGCCTTTATGGCTATCCCTATTAAATGGAA
1 AAGGAAGCCTTTGTGGCAAATCTATATTAATAGGAAGCCTTTATGGCTATCCCTATTAAATGGAA
* *
168035642 GCCTTTGTGGCTATCTCTGTTAAATGGAAGCCTTTGTGGGTAATCTCTGTTA
66 GCCTTTGTGGCTATCTCTATTAAATGGAAGCCTTTGTAGGTAATCTCTGTTA
* * * ** *
168035694 AAGGGAAGCCTTTGTGGCTAAA-CTCTATTAA-AGGAATCCTTTGTGGCTAATCTTTGTTAAA-G
1 AA-GGAAGCCTTTGTGGC-AAATCTATATTAATAGGAAGCCTTTATGGCT-ATCCCTATTAAATG
* * *
168035756 GAATCCTTTGTGGCTAATCTCTATTAAA-GGAAGCCTTTGTAGGTAATCTTTGTTC
63 GAAGCCTTTGTGGCT-ATCTCTATTAAATGGAAGCCTTTGTAGGTAATCTCTGTTA
* * *
168035811 AAGGAAGCTTTTGTGGC-GATCTTTATTAA-A-GATAGCCTTTATGGCTAT
1 AAGGAAGCCTTTGTGGCAAATCTATATTAATAGGA-AGCCTTTATGGCTAT
168035859 ATCTGTTAAA
Statistics
Matches: 141, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
114 5 0.04
115 20 0.14
116 16 0.11
117 69 0.49
118 28 0.20
119 3 0.02
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (117 bp):
AAGGAAGCCTTTGTGGCAAATCTATATTAATAGGAAGCCTTTATGGCTATCCCTATTAAATGGAA
GCCTTTGTGGCTATCTCTATTAAATGGAAGCCTTTGTAGGTAATCTCTGTTA
Found at i:168040114 original size:39 final size:39
Alignment explanation
Indices: 168040060--168040203 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
168040050 AATGTTCGAG
168040060 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
168040099 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
168040138 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
168040177 TGATATCCGGGTTAAGTCCCGAAGGCA
1 TGATATCCGGGCTAAG-CCCGAAGGCA
168040204 TTTGCGGGTT
Statistics
Matches: 99, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 89 0.90
40 10 0.10
ACGTcount: A:0.25, C:0.23, G:0.31, T:0.21
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:168040236 original size:78 final size:78
Alignment explanation
Indices: 168040066--168040239 Score: 235
Period size: 78 Copynumber: 2.2 Consensus size: 78
168040056 CGAGTGATAT
168040066 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAATTGTG
** *
168040131 CGAGCTATGATAC
66 CGAGCTACCATAA
* * *
168040144 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC-ATT-T
1 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAG-CCCGAAGGCAATTGT
* *
168040207 GCGGGTTACCATAA
65 GCGAGCTACCATAA
*
168040221 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAG-CCCGAAGG
168040240 TGTTTTGAAC
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
77 19 0.22
78 57 0.67
79 9 0.11
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.21
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAATTGTG
CGAGCTACCATAA
Found at i:168046529 original size:42 final size:45
Alignment explanation
Indices: 168046452--168046538 Score: 126
Period size: 43 Copynumber: 2.0 Consensus size: 45
168046442 TGACAGCCCA
* * *
168046452 AAATTGACCCTAGTCGGAATGTGGTTTCGGTACCAC-AAACCGAG
1 AAATTGACCCTAGTCGGAAGGTGGTCTCGGGACCACAAAACCGAG
168046496 AAATTGA-CCTAGTCGG-AGGTGGTCTCGGGACCACAAAACCGAG
1 AAATTGACCCTAGTCGGAAGGTGGTCTCGGGACCACAAAACCGAG
168046539 GCATAAAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
42 15 0.38
43 17 0.44
44 7 0.18
ACGTcount: A:0.30, C:0.23, G:0.28, T:0.20
Consensus pattern (45 bp):
AAATTGACCCTAGTCGGAAGGTGGTCTCGGGACCACAAAACCGAG
Found at i:168048204 original size:39 final size:40
Alignment explanation
Indices: 168048146--168048246 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
168048136 AAATTGAATG
* *
168048146 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
168048185 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
168048225 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
168048247 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:168048239 original size:40 final size:40
Alignment explanation
Indices: 168048146--168048296 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
168048136 AAATTGAATG
* * * * *
168048146 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
168048185 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
168048225 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
168048265 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
168048297 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
39 32 0.33
40 62 0.65
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:168048311 original size:40 final size:38
Alignment explanation
Indices: 168048142--168048313 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 38
168048132 TGAGAAATTG
* *
168048142 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
168048181 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
168048218 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
168048258 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
168048298 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
168048314 TAAAGTCCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 26 0.24
40 74 0.68
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:168053600 original size:40 final size:39
Alignment explanation
Indices: 168053432--168053602 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
168053422 AGAAATTGAA
* *
168053432 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
168053472 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
168053512 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
168053552 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
168053592 TGATATCCGGG
1 TGATATCCGGG
168053603 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:168061627 original size:40 final size:39
Alignment explanation
Indices: 168061459--168061638 Score: 161
Period size: 40 Copynumber: 4.5 Consensus size: 39
168061449 AGAAATTGAA
* *
168061459 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
168061499 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
168061539 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
168061579 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
*
168061619 TGATATCCGGG-TAAGTCCCG
1 TGATATCCGGGCTAAGACCCG
168061639 TTGGCCTTGG
Statistics
Matches: 115, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.03
39 12 0.10
40 95 0.83
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:168068910 original size:28 final size:28
Alignment explanation
Indices: 168068879--168069060 Score: 247
Period size: 28 Copynumber: 6.5 Consensus size: 28
168068869 TCAATATTTT
**
168068879 GCACACTAAGTGCCATACCCAATGTCTC
1 GCACACTAAGTGCCATAATCAATGTCTC
* *
168068907 GCACACTAAGTGCCATATTCAATCTCTC
1 GCACACTAAGTGCCATAATCAATGTCTC
** * **
168068935 ATACACTAAGTGCTATAATTGATGTCTC
1 GCACACTAAGTGCCATAATCAATGTCTC
* * *
168068963 GCACACTAAGTGGCACAATCAATGTCTT
1 GCACACTAAGTGCCATAATCAATGTCTC
*
168068991 GCACACTAAGTGCCATAATCAATGTCTA
1 GCACACTAAGTGCCATAATCAATGTCTC
168069019 GCACACTAAGTGCCATAATCAATGTCTC
1 GCACACTAAGTGCCATAATCAATGTCTC
168069047 GCACACTAAGTGCC
1 GCACACTAAGTGCC
168069061 CTACATAACC
Statistics
Matches: 132, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 132 1.00
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (28 bp):
GCACACTAAGTGCCATAATCAATGTCTC
Found at i:168073146 original size:49 final size:49
Alignment explanation
Indices: 168073012--168073561 Score: 901
Period size: 49 Copynumber: 11.3 Consensus size: 49
168073002 CCCTTCGGGA
* *
168073012 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
168073059 CCTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
168073106 CTTATCACATTTATATACACTTTCACATTCTTCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
168073155 CTTATCACATATATAGACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
168073204 CTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
168073253 CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
168073302 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
168073351 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
168073400 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
168073449 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
168073498 CTTATCACATATATTTACACTTTCACATTCATCACATTGCCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
168073547 CGTATCACATATATA
1 CTTATCACATATATA
168073562 CATCTCATAC
Statistics
Matches: 478, Mismatches: 21, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 1 0.00
47 47 0.10
49 430 0.90
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:168076524 original size:40 final size:42
Alignment explanation
Indices: 168076475--168076569 Score: 99
Period size: 40 Copynumber: 2.3 Consensus size: 42
168076465 GACTCGCTCG
* * *
168076475 ATTGTCTTCGGGACA-TAGCCCGG-TTATAGTGA-TTCGCACA
1 ATTGCCTTCGGGACATTAGCCCGGATT-TAGTCACTTAGCACA
*
168076515 ATTGCCTTCGAGA-ATTAGCCCGGATTTAGTCACTTAGCACA
1 ATTGCCTTCGGGACATTAGCCCGGATTTAGTCACTTAGCACA
**
168076556 AAAGCCTTCGGGAC
1 ATTGCCTTCGGGAC
168076570 TTAATCCGGA
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
39 1 0.02
40 24 0.55
41 19 0.43
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.27
Consensus pattern (42 bp):
ATTGCCTTCGGGACATTAGCCCGGATTTAGTCACTTAGCACA
Found at i:168077339 original size:40 final size:40
Alignment explanation
Indices: 168077289--168077489 Score: 341
Period size: 40 Copynumber: 5.0 Consensus size: 40
168077279 CAAATACACG
* * *
168077289 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
168077329 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
168077369 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
168077409 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
168077449 TCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
168077488 TC
1 TC
168077490 GTCGAGACTT
Statistics
Matches: 155, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
39 4 0.03
40 151 0.97
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:168077612 original size:38 final size:38
Alignment explanation
Indices: 168077543--168077617 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 38
168077533 GAATTTTAAT
*
168077543 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* * * *
168077581 CCGGACATAATTTCT-TCATATAGTCAGCGGGTTTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
168077618 AACTCGGATT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 1 0.03
38 30 0.97
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:168080380 original size:40 final size:40
Alignment explanation
Indices: 168080335--168080501 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
168080325 CGGAATATAA
168080335 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
168080375 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
168080415 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
168080455 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
168080494 CCGGATAT
1 CCGGATAT
168080502 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:168080485 original size:80 final size:79
Alignment explanation
Indices: 168080351--168080501 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
168080341 ATAATCACGT
*
168080351 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
168080416 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
168080431 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
168080494 CCGGATAT
64 CCGGATAT
168080502 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:168081757 original size:56 final size:53
Alignment explanation
Indices: 168081694--168081802 Score: 132
Period size: 56 Copynumber: 2.0 Consensus size: 53
168081684 TCCCCTTTTC
168081694 CCTTAGTA-ATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTCTTTTCTTT
1 CCTTAGTACA-TTCGGCCAAGAAGATGGAG-AAGGATGAAC--ATTTTT-TTTTCTTT
***
168081750 CCTTAGTACATTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTTCTTT
1 CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTTTTTCTTT
168081803 TTTTTTTTCA
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
53 8 0.17
54 6 0.12
56 30 0.62
57 4 0.08
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (53 bp):
CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTTTTTCTTT
Found at i:168088393 original size:40 final size:40
Alignment explanation
Indices: 168088348--168088514 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
168088338 CGGAATATAA
168088348 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
168088388 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
168088428 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
168088468 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
168088507 CCGGATAT
1 CCGGATAT
168088515 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:168088498 original size:80 final size:79
Alignment explanation
Indices: 168088364--168088514 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
168088354 ATAATCACGT
*
168088364 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
168088429 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
168088444 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
168088507 CCGGATAT
64 CCGGATAT
168088515 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:168089775 original size:56 final size:55
Alignment explanation
Indices: 168089702--168089815 Score: 142
Period size: 56 Copynumber: 2.1 Consensus size: 55
168089692 TCCTCCCCCT
168089702 TTTCCTTAGTAATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTCTTTTC
1 TTTCCTTAGTAATTTCGGCCAAGAAGATGGAG-AAGGATGAAC-AATTTTTCTTTTC
*** * *
168089758 TTTCCTTAGTACA-TTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTTTTC
1 TTTCCTTAGTA-ATTTCGGCCAAGAAGATGGAGAAGGATGAACAATTTTTCTTTTC
168089813 TTT
1 TTT
168089816 TTTTTTTCAT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
55 14 0.27
56 33 0.65
57 4 0.08
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (55 bp):
TTTCCTTAGTAATTTCGGCCAAGAAGATGGAGAAGGATGAACAATTTTTCTTTTC
Found at i:168091188 original size:49 final size:49
Alignment explanation
Indices: 168091002--168091355 Score: 522
Period size: 49 Copynumber: 7.3 Consensus size: 49
168090992 CCCTTCGGGA
* * *
168091002 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
168091049 CCTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
168091096 CTTATCACATTTATATACAC-TTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* *
168091144 CTTATCACATATATACACACTTTCACATTCATCACCTCCGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
168091193 CTTATCACATATATATACACTTTCACATTCATCACGTTGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
168091242 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
** *
168091291 CTTATCACATATATTTACACTTTCACATTCATCACAT-TGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
168091339 CGTATCACATATATACA
1 CTTATCACATATATACA
168091356 TCTCATACAT
Statistics
Matches: 277, Mismatches: 26, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
47 50 0.18
48 72 0.26
49 155 0.56
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:168091266 original size:98 final size:98
Alignment explanation
Indices: 168091002--168091355 Score: 576
Period size: 98 Copynumber: 3.7 Consensus size: 98
168090992 CCCTTCGGGA
* *
168091002 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGCCCTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
168091065 AC-C-TTCACATTCATCACATCGGCCATTAGGC
66 ACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
168091096 CTTATCACATTTATATACAC-TTCACATTCTTCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
* *
168091160 ACACTTTCACATTCATCACCTCCGCCATTAGGC
66 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
168091193 CTTATCACATATATATACACTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
168091258 ACACTTTCACATTCATCACATCGGCCATTAGGC
66 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
168091291 CTTATCACATATATTTACACTTTCACATTCATCACATT-GCCATTAGGCCGTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
168091355 A
66 A
168091356 TCTCATACAT
Statistics
Matches: 240, Mismatches: 15, Indels: 7
0.92 0.06 0.03
Matches are distributed among these distances:
94 10 0.04
95 43 0.18
96 8 0.03
97 71 0.30
98 108 0.45
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (98 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
ACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:168091347 original size:195 final size:191
Alignment explanation
Indices: 168091002--168091355 Score: 584
Period size: 195 Copynumber: 1.8 Consensus size: 191
168090992 CCCTTCGGGA
*
168091002 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGCCCTATCACATATATACAC
1 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTAGGCCCTATCACATATATACAC
* *
168091067 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTTATATACACTTCACATTCTTCACAT
66 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTCACATTCATCACAT
*
168091132 CGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACCTCCGCCATTAGGC
131 CGGCCATTAGGCCGTATCACATATATACACACTTTCACATTCATCACCTCCGCCATTAGGC
* *
168091193 CTTATCACATATATATACACTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTAGGCCCTATCACATATATAC
*
168091258 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTTACACTTTCACATTCAT
64 AC-C-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC-TTCACATTCAT
*
168091323 CACAT-TGCCATTAGGCCGTATCACATATATACA
126 CACATCGGCCATTAGGCCGTATCACATATATACA
168091356 TCTCATACAT
Statistics
Matches: 150, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
191 10 0.07
192 1 0.01
193 51 0.34
194 1 0.01
195 72 0.48
196 15 0.10
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (191 bp):
CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTAGGCCCTATCACATATATACAC
CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTCACATTCATCACAT
CGGCCATTAGGCCGTATCACATATATACACACTTTCACATTCATCACCTCCGCCATTAGGC
Found at i:168101375 original size:40 final size:39
Alignment explanation
Indices: 168101326--168101532 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 39
168101316 TCTTCGGAAT
* *
168101326 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** *
168101365 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* *
168101405 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCAGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
168101445 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* *
168101485 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGGC
1 TTAGCCCGGATATAA-CAACTAGCA-CAATGCCTTCGGGTC
168101525 TTAGCCCG
1 TTAGCCCG
168101533 TGTATCATTC
Statistics
Matches: 144, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.02
40 138 0.96
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:168105493 original size:27 final size:27
Alignment explanation
Indices: 168105454--168105536 Score: 139
Period size: 27 Copynumber: 3.0 Consensus size: 27
168105444 TAAAAAGGAC
*
168105454 TAAATTGTAAAAAAATGCAAAAGTTGAG
1 TAAATTGT-AAAAAGTGCAAAAGTTGAG
168105482 TAAATTGTAAAAAGTGCAAAAGTTGAG
1 TAAATTGTAAAAAGTGCAAAAGTTGAG
*
168105509 TAAATTATAAAAAGTGCAAAAGTTGAG
1 TAAATTGTAAAAAGTGCAAAAGTTGAG
168105536 T
1 T
168105537 TCCACATGTT
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
27 45 0.85
28 8 0.15
ACGTcount: A:0.51, C:0.04, G:0.19, T:0.27
Consensus pattern (27 bp):
TAAATTGTAAAAAGTGCAAAAGTTGAG
Found at i:168111927 original size:43 final size:43
Alignment explanation
Indices: 168111841--168111995 Score: 123
Period size: 43 Copynumber: 3.6 Consensus size: 43
168111831 GTTATCGAGA
*
168111841 TGTGATTACATGTAAGACCATGTCTGGGAAATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGAAATTGGCATCGTAT
** * * **
168111884 TGTGATTATGTGTAATACCATGTCTGGGACATTGTTATCGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGAAATTGGCATCGTAT
* * * * * * * * *
168111927 TATGGTTTCGTGTAAGAACTTGTCTGAGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGAAATTGGCATCGTAT
* * *
168111969 ATATGATAACATGTAAGACCATATCTG
1 -TGTGATTACATGTAAGACCATGTCTG
168111996 AGATACGGCA
Statistics
Matches: 86, Mismatches: 25, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
42 2 0.02
43 84 0.98
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGAAATTGGCATCGTAT
Found at i:168127452 original size:40 final size:40
Alignment explanation
Indices: 168127403--168127596 Score: 131
Period size: 40 Copynumber: 4.8 Consensus size: 40
168127393 CGAAATTTAA
* * * *
168127403 CCGGATATAGCGACTCACTCGATTGTCTTCGGGACATAGC
1 CCGGTTATAGTGACTCGCACGATTGTCTTCGGGACATAGC
* * *
168127443 CCGGTTATAGTGATTCGCACAATTGCCTTCGGGA-ATTAGC
1 CCGGTTATAGTGACTCGCACGATTGTCTTCGGGACA-TAGC
* * * *
168127483 CCGGATT-TAGTAACTCGCACGAATGTCTTCGGGACTTAAC
1 CCGG-TTATAGTGACTCGCACGATTGTCTTCGGGACATAGC
* * * * * * * *
168127523 CCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGTTATAGTGACTCGCACGATTGTCTTCGGGACATAGC
* * * * * *
168127563 CCGGTTTTGGTAACTCGCACAAATGCCTTCGGGA
1 CCGGTTATAGTGACTCGCACGATTGTCTTCGGGA
168127597 GTTGACCCGG
Statistics
Matches: 133, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.02
40 128 0.96
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGTTATAGTGACTCGCACGATTGTCTTCGGGACATAGC
Found at i:168127605 original size:40 final size:40
Alignment explanation
Indices: 168127429--168127729 Score: 343
Period size: 40 Copynumber: 7.5 Consensus size: 40
168127419 ACTCGATTGT
* * * * *
168127429 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGC
* * * *
168127469 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGT
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* *
168127509 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* *
168127549 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* * * *
168127589 CTTCGGGAGTTGACCCGGATTTAGTCACTTAGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATGC
* *
168127630 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* * * * *
168127670 CTTCGGGAGTTGACCCGGATTTAGTCACCTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGATTTAGT-AACTCGCACAAATGC
*
168127711 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAACCCGGA
168127730 CACCATTCGA
Statistics
Matches: 223, Mismatches: 35, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
40 159 0.71
41 64 0.29
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:168127646 original size:81 final size:80
Alignment explanation
Indices: 168127459--168127728 Score: 387
Period size: 81 Copynumber: 3.4 Consensus size: 80
168127449 ATAGTGATTC
* * * * * * * * *
168127459 GCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGTCTTCGGGACTTAACC
1 GCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAGTTGACC
* * * *
168127524 CGGTTTTGGTAACTC
66 CGGATTTAGTCACTA
168127539 GCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAGTTGACC
1 GCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAGTTGACC
168127604 CGGATTTAGTCACTTA
66 CGGATTTAGTCAC-TA
168127620 GCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAGTTGACC
1 GCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAGTTGACC
168127685 CGGATTTAGTCACCTA
66 CGGATTTAGTCA-CTA
* *
168127701 GCACAAAAGCCTTCGGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGACTTAACCCGG
168127729 ACACCATTCG
Statistics
Matches: 173, Mismatches: 15, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
80 66 0.38
81 106 0.61
82 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAGTTGACC
CGGATTTAGTCACTA
Found at i:168132648 original size:28 final size:28
Alignment explanation
Indices: 168132579--168132677 Score: 110
Period size: 28 Copynumber: 3.4 Consensus size: 28
168132569 GACAAGATTG
* * * *
168132579 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
168132609 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
168132637 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
168132666 GCACTAAGTGTG
1 GCACTAAGTGTG
168132678 TGGATTCACT
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.39
29 17 0.27
30 18 0.29
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:168138776 original size:27 final size:26
Alignment explanation
Indices: 168138675--168138817 Score: 110
Period size: 27 Copynumber: 5.3 Consensus size: 26
168138665 NNNNNNNNNN
* *
168138675 GGTAATTTTACAAGTCGAGGGTATTTT
1 GGTAATTTTACAA-ACTAGGGTATTTT
** ** * *
168138702 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACA-AACTAGGGTATTTT
* * *
168138729 AGTAA-TTCACAAATTAGGGGTATTTT
1 GGTAATTTTACAAACTA-GGGTATTTT
168138755 GGTAATTTTACAAACTATGGGT-TATTT
1 GGTAATTTTACAAACTA-GGGTAT-TTT
*
168138782 GATAATTTTACAAAACTAGGGTATTTT
1 GGTAATTTTAC-AAACTAGGGTATTTT
168138809 GGTAATTTT
1 GGTAATTTT
168138818 GTAAACCAAA
Statistics
Matches: 93, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
25 1 0.01
26 18 0.19
27 67 0.72
28 7 0.08
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (26 bp):
GGTAATTTTACAAACTAGGGTATTTT
Found at i:168141746 original size:40 final size:40
Alignment explanation
Indices: 168141670--168141774 Score: 167
Period size: 40 Copynumber: 2.6 Consensus size: 40
168141660 CGGGTTTGGG
* *
168141670 AACTTGCACAAATGCCTTCGGGT-TTAGCCCAGATATAAC
1 AACTCGCACGAATGCCTTCGGGTCTTAGCCCAGATATAAC
*
168141709 AACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAC
1 AACTCGCACGAATGCCTTCGGGTCTTAGCCCAGATATAAC
*
168141749 AACTCGCACGAATGCCTTTGGGTCTT
1 AACTCGCACGAATGCCTTCGGGTCTT
168141775 TACAGCGTAG
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
39 21 0.34
40 40 0.66
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
AACTCGCACGAATGCCTTCGGGTCTTAGCCCAGATATAAC
Found at i:168149626 original size:80 final size:77
Alignment explanation
Indices: 168149499--168149709 Score: 244
Period size: 79 Copynumber: 2.7 Consensus size: 77
168149489 TCTTCGGAAT
* * * *** *
168149499 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTTTGGTAACTTGCAC
1 TTAGCCCGGATATAA-CACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGGTATAACAACTCGCAC
168149563 AAATGCCTTCGGGTC
64 AAATGCCTT-GGGTC
* *
168149578 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGGTATAACAACTCGCAC
*
168149643 GAATGCCTTGGGTC
64 AAATGCCTTGGGTC
* *
168149657 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
1 TTAGCCCGGATATAA-CACTAGCA-CAATGCCTTCGGGTCTTAGCCCGGGTAT
168149710 CATTCAAATG
Statistics
Matches: 113, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
79 56 0.50
80 55 0.49
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (77 bp):
TTAGCCCGGATATAACACTAGCACAATGCCTTCGGGTCTTAGCCCGGGTATAACAACTCGCACAA
ATGCCTTGGGTC
Found at i:168149667 original size:39 final size:40
Alignment explanation
Indices: 168149499--168149705 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
168149489 TCTTCGGAAT
* ** *
168149499 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * * *** *
168149538 TTAACCCGGGTTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
168149578 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
168149618 TTAGCCCGGATATAACAACTCGCACGAATGCCTT-GGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
168149657 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
168149697 TTAGCCCGG
1 TTAGCCCGG
168149706 GTATCATTCA
Statistics
Matches: 143, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 37 0.26
40 106 0.74
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:168154167 original size:30 final size:30
Alignment explanation
Indices: 168154133--168154193 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
168154123 TCCTTAACTC
168154133 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
168154163 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
168154193 A
1 A
168154194 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:168157437 original size:39 final size:40
Alignment explanation
Indices: 168157265--168157471 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
168157255 TCTTCGGAAT
* ** *
168157265 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * * *** *
168157304 TTAACCCGGGTTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
168157344 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
168157384 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGG-C
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
168157423 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
168157463 TTAGCCCGG
1 TTAGCCCGG
168157472 GTATCATTCA
Statistics
Matches: 144, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 37 0.26
40 107 0.74
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:168163390 original size:40 final size:39
Alignment explanation
Indices: 168163325--168163492 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 39
168163315 TCTTCGGAAT
* **
168163325 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAA-TGCCTTCGGGTC
* * * *** * *
168163364 TTAACCCGGGTTTGGTAACTTGCACAAATGCCTTTGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
168163404 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
* * *
168163444 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTC
168163484 TTAGCCCGG
1 TTAGCCCGG
168163493 GTATCATTCA
Statistics
Matches: 103, Mismatches: 22, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
39 3 0.03
40 97 0.94
41 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTCGCACAATGCCTTCGGGTC
Found at i:168163473 original size:80 final size:80
Alignment explanation
Indices: 168163316--168163492 Score: 196
Period size: 80 Copynumber: 2.2 Consensus size: 80
168163306 AACCAAGTTT
* * * * * **
168163316 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
*
168163380 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* * ** *
168163395 CTTTGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAA
* *
168163459 TCACTAGCATAAATGC
65 TAACTAGCACAAATGC
168163475 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
168163493 GTATCATTCA
Statistics
Matches: 79, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
79 9 0.11
80 68 0.86
81 2 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:168167948 original size:30 final size:30
Alignment explanation
Indices: 168167914--168167974 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
168167904 TCCTTAACTC
168167914 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
168167944 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
168167974 A
1 A
168167975 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:168177121 original size:46 final size:45
Alignment explanation
Indices: 168177069--168177272 Score: 197
Period size: 46 Copynumber: 4.5 Consensus size: 45
168177059 GTCGATGCCG
* * *
168177069 TGTCCCAGACAGGTCTTACACTGA-CACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCT---CGTAGCCGACGCA
168177115 TGTCCCAGACATGTCTTACACT-AGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
* *
168177159 TGTCCCAGACATGTCTGACACTG-GCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTGAGC-A-CATCTCGTA-GCCGACGCA
* * * *
168177205 TGTCCCAGACATGTCTTACACTG-GCTC-TCATACTGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATC-T-C-GTAGCCGACGCA
168177251 TGTCCCAGACATGTCTTACACT
1 TGTCCCAGACATGTCTTACACT
168177273 AGCCCTCGTC
Statistics
Matches: 139, Mismatches: 9, Indels: 20
0.83 0.05 0.12
Matches are distributed among these distances:
43 5 0.04
44 33 0.24
45 4 0.03
46 97 0.70
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
Found at i:168177292 original size:92 final size:91
Alignment explanation
Indices: 168177112--168177328 Score: 249
Period size: 92 Copynumber: 2.4 Consensus size: 91
168177102 CCGTGCTGAC
*
168177112 GCATGTCCCAGACATGTCTTACACTAG-CACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
1 GCATGTCCCAGACATGTCTTACACTGGCCACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
* * *
168177176 ACACTGGCTATCATCTCGAGGCCGAT
66 ACACTAGCCATCATCTCAAGGCCGAT
* * * *
168177202 GCATGTCCCAGACATGTCTTACACTGGCTCTCATACT-GTGGCTGATGCATGTCCCAGACATGTC
1 GCATGTCCCAGACATGTCTTACACTGGC-CACAT-CTCGTAGCCGACGCATGTCCCAGACATGTC
* * * *
168177266 TTACACTAGCCCTCGTCTCAATGCCGAT
64 TGACACTAGCCATCATCTCAAGGCCGAT
* *
168177294 GCCATGTCTCATACATGGTCTTACACTGGCACACA
1 G-CATGTCCCAGACAT-GTCTTACACTGGC-CACA
168177329 AATCTCATGT
Statistics
Matches: 106, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
90 26 0.25
92 50 0.47
93 14 0.13
94 16 0.15
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.26
Consensus pattern (91 bp):
GCATGTCCCAGACATGTCTTACACTGGCCACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
ACACTAGCCATCATCTCAAGGCCGAT
Found at i:168177295 original size:46 final size:44
Alignment explanation
Indices: 168177112--168177320 Score: 190
Period size: 46 Copynumber: 4.6 Consensus size: 44
168177102 CCGTGCTGAC
*
168177112 GCATGTCCCAGACATGTCTTACACTAGCACATC-TCGTA-GCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCATC-TATGCCGAT
* * * *
168177156 GCATGTCCCAGACATGTCTGACACTGGCTATCATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* * *
168177202 GCATGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGCTGAT
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCAT-CTAT-GCCGAT
* *
168177248 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* *
168177294 GCCATGTCTCATACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
168177321 GGCACACAAA
Statistics
Matches: 138, Mismatches: 15, Indels: 20
0.80 0.09 0.12
Matches are distributed among these distances:
43 4 0.03
44 28 0.20
45 4 0.03
46 77 0.56
47 15 0.11
48 10 0.07
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.27
Consensus pattern (44 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCATCTATGCCGAT
Found at i:168183437 original size:47 final size:49
Alignment explanation
Indices: 168183361--168183493 Score: 172
Period size: 47 Copynumber: 2.8 Consensus size: 49
168183351 TGTAACCCGC
168183361 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
168183411 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
168183454 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
168183494 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 15
0.79 0.04 0.16
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 29 0.40
47 30 0.42
48 2 0.03
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:168183509 original size:46 final size:44
Alignment explanation
Indices: 168183369--168183509 Score: 135
Period size: 46 Copynumber: 3.0 Consensus size: 44
168183359 GCCCATAAGC
*
168183369 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
168183416 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
168183462 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
168183508 GA
1 GA
168183510 CATGTCACTT
Statistics
Matches: 79, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.42
47 31 0.39
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:168191229 original size:29 final size:29
Alignment explanation
Indices: 168191167--168191269 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
168191157 TTGATGAGAT
* * *
168191167 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
168191196 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
168191225 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
168191254 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
168191270 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:168194190 original size:46 final size:46
Alignment explanation
Indices: 168194016--168194190 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
168194006 TGTAACCCGC
* * * * *
168194016 CCATAAGCGAAGTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
168194062 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
168194112 -C-TCA--CAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
168194154 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
168194191 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 2 0.02
44 2 0.02
46 89 0.82
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:168203530 original size:25 final size:25
Alignment explanation
Indices: 168203501--168203548 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
168203491 TTATAATATG
* * *
168203501 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
168203526 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
168203549 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:168203610 original size:20 final size:20
Alignment explanation
Indices: 168203585--168203627 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
168203575 ATTTTGATAA
168203585 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
168203605 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
168203625 ACA
1 ACA
168203628 CGAGATGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:168203635 original size:20 final size:20
Alignment explanation
Indices: 168203592--168203635 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
168203582 TAAACATGAT
* *
168203592 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACACGAG
168203612 ATGTATGATATGCACACGAG
1 ATGTATGATATGCACACGAG
168203632 ATGT
1 ATGT
168203636 TCATAAATGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACACGAG
Found at i:168203708 original size:24 final size:24
Alignment explanation
Indices: 168203681--168203800 Score: 190
Period size: 24 Copynumber: 5.0 Consensus size: 24
168203671 GAGGAAGTGC
168203681 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
168203705 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
168203729 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
168203753 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
168203777 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
168203801 ATGATAAAGC
Statistics
Matches: 91, Mismatches: 1, Indels: 7
0.92 0.01 0.07
Matches are distributed among these distances:
23 6 0.07
24 67 0.74
25 18 0.20
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:168204027 original size:31 final size:31
Alignment explanation
Indices: 168203992--168204055 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
168203982 CGTTTACAGT
168203992 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
168204023 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
168204054 AA
1 AA
168204056 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:168211580 original size:25 final size:25
Alignment explanation
Indices: 168211551--168211598 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
168211541 TTATAATATG
* * *
168211551 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
168211576 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
168211599 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:168211649 original size:9 final size:9
Alignment explanation
Indices: 168211637--168211693 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
168211627 TTTGATAAAC
168211637 ATGATATGT
1 ATGATATGT
*
168211646 ATGATATGCAC
1 ATGATATG--T
*
168211657 ATGACATGT
1 ATGATATGT
*
168211666 ATGATATGCAC
1 ATGATATG--T
168211677 ATGATATGT
1 ATGATATGT
168211686 ATGATATG
1 ATGATATG
168211694 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:168211660 original size:20 final size:20
Alignment explanation
Indices: 168211635--168211697 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
168211625 ATTTTGATAA
168211635 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
168211655 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
168211675 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
168211695 ACA
1 ACA
168211698 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:168211777 original size:24 final size:24
Alignment explanation
Indices: 168211750--168211892 Score: 229
Period size: 24 Copynumber: 6.0 Consensus size: 24
168211740 GAGGAAGTGC
168211750 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
168211774 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
168211798 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
168211822 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
168211845 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
168211869 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
168211893 ATGATAAAGC
Statistics
Matches: 113, Mismatches: 1, Indels: 9
0.92 0.01 0.07
Matches are distributed among these distances:
23 29 0.26
24 67 0.59
25 17 0.15
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:168211844 original size:47 final size:48
Alignment explanation
Indices: 168211750--168211871 Score: 221
Period size: 47 Copynumber: 2.6 Consensus size: 48
168211740 GAGGAAGTGC
168211750 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT-
1 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATTA
168211798 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTA
168211846 AAAAGGGCTT-TGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
168211872 AGAGGCTAGG
Statistics
Matches: 73, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
47 39 0.53
48 34 0.47
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTA
Found at i:168211867 original size:71 final size:72
Alignment explanation
Indices: 168211751--168211892 Score: 236
Period size: 71 Copynumber: 2.0 Consensus size: 72
168211741 AGGAAGTGCA
*
168211751 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC-C
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTC
168211814 CAGTTATT
65 CAGTTATT
168211822 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTC
168211886 CAGTTAT
65 CAGTTAT
168211893 ATGATAAAGC
Statistics
Matches: 67, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
71 46 0.69
72 21 0.31
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (72 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCC
AGTTATT
Found at i:168212120 original size:31 final size:31
Alignment explanation
Indices: 168212085--168212148 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
168212075 CGTTTACAGT
*
168212085 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
** *
168212116 AAAGGCTTCAGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
168212147 AA
1 AA
168212149 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:168215436 original size:40 final size:39
Alignment explanation
Indices: 168215391--168215520 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
168215381 CGGAATATAA
168215391 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
168215431 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
168215471 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
168215511 CCGGATATAA
1 CCGGATATAA
168215521 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:168215535 original size:40 final size:40
Alignment explanation
Indices: 168215407--168215558 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
168215397 ATAACCATGT
* * *
168215407 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
168215447 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
168215487 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
168215527 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
168215559 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:168215541 original size:80 final size:80
Alignment explanation
Indices: 168215407--168215556 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
168215397 ATAACCATGT
*
168215407 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
168215471 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
168215487 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
168215550 CCCGGAT
64 CCCGGAT
168215557 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:168223427 original size:40 final size:40
Alignment explanation
Indices: 168223382--168223549 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
168223372 CGGAATATAA
168223382 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
168223422 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
168223462 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
168223502 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
168223542 CCGGATAT
1 CCGGATAT
168223550 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:168223532 original size:80 final size:80
Alignment explanation
Indices: 168223398--168223547 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
168223388 ATAATCACGT
*
168223398 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
168223462 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
168223478 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
168223541 CCCGGAT
64 CCCGGAT
168223548 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:168229652 original size:39 final size:40
Alignment explanation
Indices: 168229598--168229813 Score: 316
Period size: 39 Copynumber: 5.5 Consensus size: 40
168229588 AAACCAAGTA
* * * *
168229598 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
168229637 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
168229677 CCTTCGGGACTTAGCCCGG-TATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
168229716 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
168229756 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
168229795 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
168229814 TTATCATCCG
Statistics
Matches: 165, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
38 1 0.01
39 87 0.53
40 77 0.47
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:168229729 original size:79 final size:79
Alignment explanation
Indices: 168229631--168229817 Score: 322
Period size: 79 Copynumber: 2.4 Consensus size: 79
168229621 GCTACTTGCT
168229631 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG
* *
168229696 TA-TAGTAACTCGCA
65 AATTAGTAACTAGCA
*
168229710 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGA
*
168229775 ATTAGTCACTAGCA
66 ATTAGTAACTAGCA
168229789 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
168229818 CATCCGAATA
Statistics
Matches: 102, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
78 11 0.11
79 91 0.89
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGA
ATTAGTAACTAGCA
Found at i:168238780 original size:40 final size:40
Alignment explanation
Indices: 168238653--168238782 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
168238643 ATGCTGGAAA
* * *
168238653 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
168238693 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
168238733 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
168238773 TTATATCCGG
1 TTATATCCGG
168238783 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:168246809 original size:40 final size:40
Alignment explanation
Indices: 168246682--168246811 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
168246672 ATGCTGGAAA
* * *
168246682 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
168246722 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
168246762 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
168246802 TTATATCCGG
1 TTATATCCGG
168246812 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Done.