Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 541 of 770
Found at i:168252819 original size:21 final size:21
Alignment explanation
Indices: 168252794--168252838 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
168252784 ACTTCTTCGA
168252794 ATTTGTTTACCTATTATTATT
1 ATTTGTTTACCTATTATTATT
*
168252815 ATTTGTTTATCTATTATTATT
1 ATTTGTTTACCTATTATTATT
168252836 ATT
1 ATT
168252839 ATTTTTTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.24, C:0.07, G:0.04, T:0.64
Consensus pattern (21 bp):
ATTTGTTTACCTATTATTATT
Found at i:168252850 original size:21 final size:23
Alignment explanation
Indices: 168252805--168252851 Score: 71
Period size: 24 Copynumber: 2.1 Consensus size: 23
168252795 TTTGTTTACC
168252805 TATTATTATTATTTGTTTATCTAT
1 TATTATTATTATTTGTTTA-CTAT
168252829 TATTATTATTATTT-TTTA-TAT
1 TATTATTATTATTTGTTTACTAT
168252850 TA
1 TA
168252852 GAGGCTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.22
23 4 0.17
24 14 0.61
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (23 bp):
TATTATTATTATTTGTTTACTAT
Found at i:168254818 original size:35 final size:35
Alignment explanation
Indices: 168254779--168254851 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
168254769 ACACATTCTT
168254779 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
168254814 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
168254849 TAT
1 TAT
168254852 ATCACATACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:168258921 original size:58 final size:57
Alignment explanation
Indices: 168258798--168258966 Score: 286
Period size: 58 Copynumber: 2.9 Consensus size: 57
168258788 GTGCCCACTG
*
168258798 ACCGATCTCGCACACATAGTGCTCGGTTGAA-GAACTTGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAA-TTGCACACACAGTGCCTCAATT
168258855 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATT-GCACACACAGTGCCTCAATT
*
168258913 ACTGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAA-TTGCACACACAGTGCCTC
168258967 TAATCATTCG
Statistics
Matches: 107, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
57 32 0.30
58 73 0.68
59 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (57 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTGCACACACAGTGCCTCAATT
Found at i:168258954 original size:29 final size:28
Alignment explanation
Indices: 168258805--168258963 Score: 110
Period size: 29 Copynumber: 5.5 Consensus size: 28
168258795 CTGACCGATC
*
168258805 TCGCACACATAGTGCTCGGTTGAA-GAACT
1 TCGCACACACAGTGCTCGGTT-AAGGAA-T
** **
168258834 T-GCACACACAGTGCCTCAATTACCG-AT
1 TCGCACACACAGTG-CTCGGTTAAGGAAT
*
168258861 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTT-AAGGAAT
** **
168258891 TCGCACACACAGTGCCTCAATTACTG-AT
1 TCGCACACACAGTG-CTCGGTTAAGGAAT
*
168258919 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTT-AAGGAAT
*
168258949 TTGCACACACAGTGC
1 TCGCACACACAGTGC
168258964 CTCTAATCAT
Statistics
Matches: 99, Mismatches: 21, Indels: 20
0.71 0.15 0.14
Matches are distributed among these distances:
27 1 0.01
28 26 0.26
29 63 0.64
30 9 0.09
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACACAGTGCTCGGTTAAGGAAT
Found at i:168259181 original size:43 final size:43
Alignment explanation
Indices: 168259120--168259467 Score: 567
Period size: 43 Copynumber: 8.2 Consensus size: 43
168259110 CCTTGCTCGA
** *
168259120 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
168259163 ATCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
168259206 ATCACTGGCACGAAGCCTGCTAGGCACGAAGGCCC-AA-ACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
168259247 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
168259290 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
168259333 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
168259376 ATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCCAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
168259419 ATCACCGGCACGAAG-CTGCTAGGCACGAAGGCCCCAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
168259461 ATCACCG
1 ATCACCG
168259468 AGTTTCATGC
Statistics
Matches: 291, Mismatches: 12, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
41 36 0.12
42 38 0.13
43 217 0.75
ACGTcount: A:0.31, C:0.34, G:0.24, T:0.11
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:168259351 original size:127 final size:129
Alignment explanation
Indices: 168259132--168259465 Score: 559
Period size: 127 Copynumber: 2.6 Consensus size: 129
168259122 CACCGGCATT
* *
168259132 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCATGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
* * *
168259197 CGAATACATATCACTGGCACGAAGCCTGCTAGGCACGAAGGCCC-AA-ACACATCATCGGCACG
66 CGAATACACATCACTGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACG
*
168259259 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
168259324 CGAATACACATCA-TCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACG
66 CGAATACACATCACT-GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACG
*
168259388 AAGCCTGCTAGGCACGAAGGCCCCAATACACATCACCGGCACGAAG-CTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
*
168259452 CCAATACACATCAC
66 CGAATACACATCAC
168259466 CGAGTTTCAT
Statistics
Matches: 194, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
126 1 0.01
127 103 0.53
128 32 0.16
129 58 0.30
ACGTcount: A:0.31, C:0.34, G:0.24, T:0.11
Consensus pattern (129 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
CGAATACACATCACTGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACG
Found at i:168260901 original size:35 final size:35
Alignment explanation
Indices: 168260862--168260934 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
168260852 ACACATTCTT
168260862 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
168260897 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
168260932 TAT
1 TAT
168260935 ATCACATACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:168265003 original size:58 final size:57
Alignment explanation
Indices: 168264880--168265048 Score: 286
Period size: 58 Copynumber: 2.9 Consensus size: 57
168264870 GTGCCCACTG
*
168264880 ACCGATCTCGCACACATAGTGCTCGGTTGAA-GAACTTGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAA-TTGCACACACAGTGCCTCAATT
168264937 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATT-GCACACACAGTGCCTCAATT
*
168264995 ACTGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAA-TTGCACACACAGTGCCTC
168265049 TAATCATTCG
Statistics
Matches: 107, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
57 32 0.30
58 73 0.68
59 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (57 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTGCACACACAGTGCCTCAATT
Found at i:168265036 original size:29 final size:28
Alignment explanation
Indices: 168264887--168265045 Score: 110
Period size: 29 Copynumber: 5.5 Consensus size: 28
168264877 CTGACCGATC
*
168264887 TCGCACACATAGTGCTCGGTTGAA-GAACT
1 TCGCACACACAGTGCTCGGTT-AAGGAA-T
** **
168264916 T-GCACACACAGTGCCTCAATTACCG-AT
1 TCGCACACACAGTG-CTCGGTTAAGGAAT
*
168264943 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTT-AAGGAAT
** **
168264973 TCGCACACACAGTGCCTCAATTACTG-AT
1 TCGCACACACAGTG-CTCGGTTAAGGAAT
*
168265001 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTT-AAGGAAT
*
168265031 TTGCACACACAGTGC
1 TCGCACACACAGTGC
168265046 CTCTAATCAT
Statistics
Matches: 99, Mismatches: 21, Indels: 20
0.71 0.15 0.14
Matches are distributed among these distances:
27 1 0.01
28 26 0.26
29 63 0.64
30 9 0.09
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACACAGTGCTCGGTTAAGGAAT
Found at i:168265263 original size:43 final size:43
Alignment explanation
Indices: 168265202--168265550 Score: 576
Period size: 43 Copynumber: 8.2 Consensus size: 43
168265192 CCTTGCTCGA
** *
168265202 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
168265245 ATCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
168265288 ATCACCGGCACGAAGCCTGCTAGGCACGAAGG-CCAAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
168265330 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
168265373 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
168265416 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
168265459 ATCACC-ACACGAAGCCTGCTAGGCACGAAGGCCCCAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
168265501 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCCAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
168265544 ATCACCG
1 ATCACCG
168265551 AGTTTCATGC
Statistics
Matches: 292, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
42 79 0.27
43 213 0.73
ACGTcount: A:0.31, C:0.34, G:0.23, T:0.11
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:168265353 original size:85 final size:86
Alignment explanation
Indices: 168265202--168265550 Score: 576
Period size: 85 Copynumber: 4.1 Consensus size: 86
168265192 CCTTGCTCGA
** * *
168265202 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCATGAAGCCTGCTA
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTA
*
168265267 GGCACGAAGGCCCGAATACAT
66 GGCACGAAGGCCCGAATACAC
* *
168265288 ATCACCGGCACGAAGCCTGCTAGGCACGAAGG-CCAAATACACATCATCGGCACGAAGCCTGCTA
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTA
168265352 GGCACGAAGGCCCGAATACAC
66 GGCACGAAGGCCCGAATACAC
* *
168265373 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAAGCCTGCTA
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTA
168265438 GGCACGAAGGCCCGAATACAC
66 GGCACGAAGGCCCGAATACAC
* *
168265459 ATCACC-ACACGAAGCCTGCTAGGCACGAAGGCCCCAATACACATCACCGGCACGAAGCCTGCTA
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTA
*
168265523 GGCACGAAGGCCCCAATACAC
66 GGCACGAAGGCCCGAATACAC
168265544 ATCACCG
1 ATCACCG
168265551 AGTTTCATGC
Statistics
Matches: 247, Mismatches: 14, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
85 161 0.65
86 86 0.35
ACGTcount: A:0.31, C:0.34, G:0.23, T:0.11
Consensus pattern (86 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTA
GGCACGAAGGCCCGAATACAC
Found at i:168265435 original size:128 final size:128
Alignment explanation
Indices: 168265214--168265550 Score: 568
Period size: 128 Copynumber: 2.6 Consensus size: 128
168265204 CACCGGCATT
* *
168265214 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCATGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
* **
168265279 CGAATACATATCACCGGCACGAAGCCTGCTAGGCACGAAGG-CCAAATACACATCATCGGCACG
66 CGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCA-CCACACG
*
168265342 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
* *
168265407 CGAATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCACACG
66 CGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCACCACACG
*
168265470 AAGCCTGCTAGGCACGAAGGCCCCAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
*
168265535 CCAATACACATCACCG
66 CGAATACACATCACCG
168265551 AGTTTCATGC
Statistics
Matches: 196, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
128 183 0.93
129 13 0.07
ACGTcount: A:0.31, C:0.34, G:0.24, T:0.11
Consensus pattern (128 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
CGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCACCACACG
Found at i:168266985 original size:35 final size:35
Alignment explanation
Indices: 168266946--168267018 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
168266936 ACACATTCTT
168266946 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
168266981 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
168267016 TAT
1 TAT
168267019 ATCACATACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:168269788 original size:23 final size:23
Alignment explanation
Indices: 168269750--168269816 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
168269740 GTTTTTTCGT
*
168269750 TTCTTTTCTTTC--TTTGTTTTA
1 TTCTTTTCTTCCATTTTGTTTTA
168269771 TTCTTTTCTTCCATTTTGCTTTT-
1 TTCTTTTCTTCCATTTTG-TTTTA
* * *
168269794 TGCTTTGCTGCCATTTTGTTTTA
1 TTCTTTTCTTCCATTTTGTTTTA
168269817 GTGGTAACGT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
21 11 0.29
22 4 0.11
23 19 0.50
24 4 0.11
ACGTcount: A:0.06, C:0.18, G:0.09, T:0.67
Consensus pattern (23 bp):
TTCTTTTCTTCCATTTTGTTTTA
Found at i:168274536 original size:86 final size:87
Alignment explanation
Indices: 168274420--168274585 Score: 212
Period size: 86 Copynumber: 1.9 Consensus size: 87
168274410 TAAATTTTTC
** * *
168274420 GATCTATTTCCTACTGCTTAGGGGGTTAAGAT-TCGTCAATCTTCAGC-TGTTACCCTACT-TTA
1 GATCTATTTCCTACTGCTTAGGGGAATAAGATCT-GTAAATCCTCAGCTTGTTACCCTACTCTTA
* *
168274482 GGGGTTTAAGGCTTGTCACCTTT
65 GGGGGTTAAAGCTTGTCACCTTT
* *
168274505 GATCTGTTTCCCTACTGCTTAGGGTAATAAGATCTGTAAATCCTCAGCTTGTTACCCTACTGCTT
1 GATCTATTT-CCTACTGCTTAGGGGAATAAGATCTGTAAATCCTCAGCTTGTTACCCTACT-CTT
168274570 AGGGGGTTAAAGCTTG
64 AGGGGGTTAAAGCTTG
168274586 GTGGTTTGAA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
85 8 0.12
86 31 0.46
87 13 0.19
89 16 0.24
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (87 bp):
GATCTATTTCCTACTGCTTAGGGGAATAAGATCTGTAAATCCTCAGCTTGTTACCCTACTCTTAG
GGGGTTAAAGCTTGTCACCTTT
Found at i:168286656 original size:6 final size:6
Alignment explanation
Indices: 168286647--168286672 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
168286637 TGACAATGAT
168286647 AACGAA AACGAA AACGAA AACGAA AA
1 AACGAA AACGAA AACGAA AACGAA AA
168286673 TAATAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.69, C:0.15, G:0.15, T:0.00
Consensus pattern (6 bp):
AACGAA
Found at i:168293612 original size:39 final size:39
Alignment explanation
Indices: 168293567--168293642 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
168293557 TGTATTTTGA
*
168293567 CAGGTTTGTGGTGGTATTTATAGTTGATATTTTGGTTGG
1 CAGGTTTGTGGTGGTATTTATAGATGATATTTTGGTTGG
168293606 CAGGTTTGTGGTGGTATTTATAGATGATATTTTGGTT
1 CAGGTTTGTGGTGGTATTTATAGATGATATTTTGGTT
168293643 TACTCTCGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.17, C:0.03, G:0.32, T:0.49
Consensus pattern (39 bp):
CAGGTTTGTGGTGGTATTTATAGATGATATTTTGGTTGG
Found at i:168299219 original size:22 final size:22
Alignment explanation
Indices: 168299192--168299242 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 22
168299182 TAGGATATGC
168299192 TATGATATG-TTCTGATATGA-A
1 TATGATATGCTT-TGATATGAGA
168299213 GTATGATATGCTTTGATATGAGA
1 -TATGATATGCTTTGATATGAGA
168299236 TATGATA
1 TATGATA
168299243 ACCTTCAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 24 0.89
23 3 0.11
ACGTcount: A:0.33, C:0.04, G:0.22, T:0.41
Consensus pattern (22 bp):
TATGATATGCTTTGATATGAGA
Found at i:168305339 original size:46 final size:46
Alignment explanation
Indices: 168305196--168305412 Score: 169
Period size: 46 Copynumber: 4.7 Consensus size: 46
168305186 ATTGTGAGCT
* * * *
168305196 AGTGTAAGAGATGTCTGGGACATGCATCGGCCAC-A-TCATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGT-A-AGCC
* * ** * *
168305242 AGTG-AAGACCATATCTGGGACATGGCTTCGGTATTGAGACG-AATGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTAA-GCC
*
168305289 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCC
* * *
168305335 AGTGTAAGACATGTCTAGGACATGCATCAG-CTACGAGA--TGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTAAGCC
*
168305379 AGTGTAAGACCATGTCTGGAACATGGCAATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GC-ATCGGC
168305413 ACAGATATGC
Statistics
Matches: 135, Mismatches: 24, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
44 13 0.10
45 18 0.13
46 66 0.49
47 32 0.24
48 5 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCC
Found at i:168306982 original size:72 final size:74
Alignment explanation
Indices: 168306851--168306999 Score: 259
Period size: 72 Copynumber: 2.0 Consensus size: 74
168306841 CTAGCGAAAG
*
168306851 TATGGGTCTAGCTATACATGCCATAATTGTATATTGATAGTGTGACAACTTCTGACGTTTATAAA
1 TATGGGTCTAGCTATACATGCCATAATTATATATTGATAGTGTGACAACTTCTGACGTTTATAAA
168306916 TTTTATTTT
66 TTTTATTTT
168306925 TATGGGTCTAGCTATACATGCCAT-A-TATATATTGATAGTGTGACAACTTCT-ACCGTTTATAA
1 TATGGGTCTAGCTATACATGCCATAATTATATATTGATAGTGTGACAACTTCTGA-CGTTTATAA
168306987 ATTTTATTTT
65 ATTTTATTTT
168306997 TAT
1 TAT
168307000 ATAGTAAATG
Statistics
Matches: 73, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
71 1 0.01
72 47 0.64
73 1 0.01
74 24 0.33
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.44
Consensus pattern (74 bp):
TATGGGTCTAGCTATACATGCCATAATTATATATTGATAGTGTGACAACTTCTGACGTTTATAAA
TTTTATTTT
Found at i:168309793 original size:12 final size:12
Alignment explanation
Indices: 168309776--168309801 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
168309766 AAAATAGGGC
168309776 TTTAGCGGCGTT
1 TTTAGCGGCGTT
168309788 TTTAGCGGCGTT
1 TTTAGCGGCGTT
168309800 TT
1 TT
168309802 ACCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:168309875 original size:40 final size:40
Alignment explanation
Indices: 168309825--168309919 Score: 129
Period size: 41 Copynumber: 2.3 Consensus size: 40
168309815 GCAAAAATTT
* *
168309825 TAAAATACAGAGCAATAACGGTGTTTTA-AGAAAAACGCCGC
1 TAAAA-ACAGAGCAACAACGGCGTTTTAGA-AAAAACGCCGC
*
168309866 TAAAAACAGAGCAACAGCGGCGTTTTAGTAAAAAACGCCGC
1 TAAAAACAGAGCAACAACGGCGTTTTAG-AAAAAACGCCGC
168309907 TAAAAACAGAGCA
1 TAAAAACAGAGCA
168309920 GTGCGTTTCA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
40 19 0.39
41 29 0.59
42 1 0.02
ACGTcount: A:0.45, C:0.19, G:0.20, T:0.16
Consensus pattern (40 bp):
TAAAAACAGAGCAACAACGGCGTTTTAGAAAAAACGCCGC
Found at i:168309900 original size:41 final size:40
Alignment explanation
Indices: 168309856--168310144 Score: 336
Period size: 41 Copynumber: 7.4 Consensus size: 40
168309846 TGTTTTAAGA
** *
168309856 AAAACGCCGCTAAAAACAGAGCAACAGCGGCG-TTTTAGT
1 AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGT
* **
168309895 AAAAAACGCCGCTAAAAACAGAGC---AG-TGCG-TTTCAGT
1 --AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGT
*
168309932 ---A-GCCACTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGT
168309969 AAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTT-GT
1 AAAACGCCGCTAAAAAC-AGAGCATTAGCGGCGCTTTTGGT
168310009 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGT
*
168310050 AAAAACG-CACTAAAAACCAGAGCATTA--GGCGCTTTTGGT
1 -AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGT
*
168310089 AAAACGCCGCTAAAACCAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGT
168310129 AAAACGCCGCTAAAAA
1 AAAACGCCGCTAAAAA
168310145 GTCATATAAC
Statistics
Matches: 220, Mismatches: 11, Indels: 35
0.83 0.04 0.13
Matches are distributed among these distances:
31 10 0.05
32 7 0.03
35 2 0.01
36 3 0.01
37 14 0.06
38 18 0.08
39 19 0.09
40 67 0.30
41 74 0.34
42 6 0.03
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (40 bp):
AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGT
Found at i:168310022 original size:40 final size:41
Alignment explanation
Indices: 168309937--168310144 Score: 354
Period size: 40 Copynumber: 5.2 Consensus size: 41
168309927 TCAGTAGCCA
168309937 CTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCG
1 CTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCG
*
168309978 CTAAAAACTAGAGCATTAGCGGCGCTTTT-GTAAAACGCCG
1 CTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCG
*
168310018 CTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAAACG-CA
1 CTAAAAACCAGAGCATTAGCGGCGCTTTTGGT-AAAACGCCG
168310059 CTAAAAACCAGAGCATTA--GGCGCTTTTGGTAAAACGCCG
1 CTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCG
168310098 CT-AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCG
1 CTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCG
168310138 CTAAAAA
1 CTAAAAA
168310145 GTCATATAAC
Statistics
Matches: 157, Mismatches: 4, Indels: 12
0.91 0.02 0.07
Matches are distributed among these distances:
38 21 0.13
39 15 0.10
40 62 0.39
41 53 0.34
42 6 0.04
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (41 bp):
CTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCG
Found at i:168310034 original size:81 final size:80
Alignment explanation
Indices: 168309937--168310144 Score: 350
Period size: 81 Copynumber: 2.6 Consensus size: 80
168309927 TCAGTAGCCA
*
168309937 CTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACTAGAGCATTAGCGGCG
1 CTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGCATTA--GGCG
168310002 CTTTT-GTAAAACGCCG
64 CTTTTGGTAAAACGCCG
*
168310018 CTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAAACG-CACTAAAAACCAGAGCATTAGGCGC
1 CTAAAAACCAGAGCATTAGCGGCGCTTTTGGT-AAAACGCCGCTAAAAACCAGAGCATTAGGCGC
168310082 TTTTGGTAAAACGCCG
65 TTTTGGTAAAACGCCG
168310098 CT-AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA
1 CTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA
168310145 GTCATATAAC
Statistics
Matches: 121, Mismatches: 3, Indels: 8
0.92 0.02 0.06
Matches are distributed among these distances:
78 6 0.05
79 46 0.38
80 13 0.11
81 50 0.41
82 6 0.05
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (80 bp):
CTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGCATTAGGCGCT
TTTGGTAAAACGCCG
Found at i:168310578 original size:25 final size:25
Alignment explanation
Indices: 168310545--168310604 Score: 102
Period size: 25 Copynumber: 2.4 Consensus size: 25
168310535 GTGATTTTGA
*
168310545 ATGTGGAATTAGCATTTGTTGAACT
1 ATGTAGAATTAGCATTTGTTGAACT
168310570 ATGTAGAATTAGCATTTGTTGAACT
1 ATGTAGAATTAGCATTTGTTGAACT
*
168310595 ATGTATAATT
1 ATGTAGAATT
168310605 TCCAAGCTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.42
Consensus pattern (25 bp):
ATGTAGAATTAGCATTTGTTGAACT
Found at i:168311197 original size:15 final size:15
Alignment explanation
Indices: 168311177--168311208 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
168311167 TTTAATTTAG
*
168311177 AAGATAAATGTATAT
1 AAGATAAATATATAT
168311192 AAGATAAATATATAT
1 AAGATAAATATATAT
168311207 AA
1 AA
168311209 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:168319696 original size:41 final size:41
Alignment explanation
Indices: 168319651--168319768 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
168319641 TGAAAGATAA
168319651 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
168319692 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
168319722 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
168319763 ATGTAG
1 ATGTAG
168319769 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:168319707 original size:71 final size:71
Alignment explanation
Indices: 168319619--168319782 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
168319609 GAGATGTATC
168319619 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
168319684 AGGACA
66 AGGACA
168319690 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
168319755 AGGACA
66 AGGACA
168319761 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
168319783 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:168328720 original size:40 final size:40
Alignment explanation
Indices: 168328608--168328760 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
168328598 GGATATAGCG
* * * * ***
168328608 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * *
168328648 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
168328688 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
168328728 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
168328761 CATCATTCGA
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 78 0.85
41 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:168336731 original size:40 final size:40
Alignment explanation
Indices: 168336619--168336771 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
168336609 GGATATAGCG
* * * * ***
168336619 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * *
168336659 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
168336699 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
168336739 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
168336772 CATCATTCGA
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 78 0.85
41 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:168338511 original size:27 final size:28
Alignment explanation
Indices: 168338468--168338622 Score: 142
Period size: 27 Copynumber: 5.7 Consensus size: 28
168338458 GGCTGTCACA
* * *
168338468 AGGGTTATTTTGATAATTTTACAAATTG
1 AGGGGTATTTTGGTAATTTTACAAATTC
* *
168338496 A-GGGTATTTTAGTAATTTTACAAGTT-
1 AGGGGTATTTTGGTAATTTTACAAATTC
* ** *
168338522 AGGGGTATTTCT-GTAATTTTATAGGTTG
1 AGGGGTATTT-TGGTAATTTTACAAATTC
* * *
168338550 A-GGGTATTTCGGTAATTTCACAAA-CC
1 AGGGGTATTTTGGTAATTTTACAAATTC
*
168338576 AGGGGTATTTTGGTAATTTTACAAA-CC
1 AGGGGTATTTTGGTAATTTTACAAATTC
168338603 AGGGGTATTTTGGTAATTTT
1 AGGGGTATTTTGGTAATTTT
168338623 GTAAACCAAG
Statistics
Matches: 107, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
26 2 0.02
27 102 0.95
28 3 0.03
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.43
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTTTACAAATTC
Found at i:168338539 original size:54 final size:53
Alignment explanation
Indices: 168338468--168338638 Score: 164
Period size: 54 Copynumber: 3.2 Consensus size: 53
168338458 GGCTGTCACA
* * ***
168338468 AGGGTTATTTTGATAATTTTACAAATTGAGGGTATTTTAGTAATTTTACAAGTT
1 AGGGGTATTTTG-TAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACC
* ** * *
168338522 AGGGGTATTTCTGTAATTTTATAGGTTGAGGGTATTTCGGTAATTTCACAAACC
1 AGGGGTATTT-TGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACC
** **
168338576 AGGGGTATTTTGGTAATTTTACAAA-CCAGGGGTATTTTGGTAATTTTGTAAACC
1 AGGGGTATTTT-GTAATTTTACAAATTGA-GGGTATTTTGGTAATTTTACAAACC
*
168338630 AAGGGTATT
1 AGGGGTATT
168338639 CAGTAATTCT
Statistics
Matches: 94, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
53 2 0.02
54 90 0.96
55 2 0.02
ACGTcount: A:0.29, C:0.08, G:0.23, T:0.41
Consensus pattern (53 bp):
AGGGGTATTTTGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACC
Found at i:168338635 original size:81 final size:80
Alignment explanation
Indices: 168338497--168338646 Score: 176
Period size: 81 Copynumber: 1.9 Consensus size: 80
168338487 TACAAATTGA
*** ***** *
168338497 GGGTATTTTAGTAATTTTACAAGTTAGGGGTATTTCTGTAATTTTATAGGTTGAGGGTATTTCGG
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTCTGTAATTTTATAAACCAAGGGTA-TTCAG
168338562 TAATTTCACAAACCAG
65 TAATTTCACAAACCAG
* *
168338578 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTT-TGGTAATTTTGTAAACCAAGGGTATTCAG
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTCT-GTAATTTTATAAACCAAGGGTATTCAG
168338642 TAATT
65 TAATT
168338647 CTACCCTGCA
Statistics
Matches: 57, Mismatches: 11, Indels: 3
0.80 0.15 0.04
Matches are distributed among these distances:
80 10 0.18
81 47 0.82
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (80 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTCTGTAATTTTATAAACCAAGGGTATTCAGT
AATTTCACAAACCAG
Found at i:168338672 original size:27 final size:26
Alignment explanation
Indices: 168338629--168338708 Score: 79
Period size: 27 Copynumber: 3.0 Consensus size: 26
168338619 TTTTGTAAAC
* *
168338629 CAAGGGTATTCAGTAATTCTACCCTG
1 CAAGGGCATTCAGTAATTCTACCCTA
*
168338655 CAAGGGCATTTCAGTAATTCTATCCTA
1 CAAGGGCA-TTCAGTAATTCTACCCTA
* * * *
168338682 TAGGGGCAATTCAGTAATACTAGCCTA
1 CAAGGGC-ATTCAGTAATTCTACCCTA
168338709 TAGATATGAG
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 7 0.16
27 37 0.82
28 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
CAAGGGCATTCAGTAATTCTACCCTA
Found at i:168338709 original size:27 final size:27
Alignment explanation
Indices: 168338658--168338711 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
168338648 TACCCTGCAA
* * *
168338658 GGGCATTTCAGTAATTCTATCCTATAG
1 GGGCAATTCAGTAATACTAGCCTATAG
168338685 GGGCAATTCAGTAATACTAGCCTATAG
1 GGGCAATTCAGTAATACTAGCCTATAG
168338712 ATATGAGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (27 bp):
GGGCAATTCAGTAATACTAGCCTATAG
Found at i:168343434 original size:31 final size:31
Alignment explanation
Indices: 168343396--168343459 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
168343386 CCTTTTCATA
168343396 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
168343427 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
168343458 TT
1 TT
168343460 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:168343700 original size:24 final size:24
Alignment explanation
Indices: 168343649--168343815 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
168343639 GCTTTATCAT
* *
168343649 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
168343674 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
168343698 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
168343721 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
168343745 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
168343769 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
168343793 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
168343816 TCACTTCCTC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 100 0.74
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:168343749 original size:71 final size:71
Alignment explanation
Indices: 168343648--168343815 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
168343638 TGCTTTATCA
*
168343648 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
168343712 AGCCCTTT
64 AGCCCTTT
* * **
168343720 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
168343785 CCCTTT
66 CCCTTT
168343791 TGATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
168343816 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 53 0.60
72 36 0.40
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:168343888 original size:20 final size:20
Alignment explanation
Indices: 168343865--168343924 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
168343855 TATGATTACC
168343865 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
168343885 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATA
*
168343905 TCATGTGCATCTCATACATA
1 TCATGTGCATATCATACATA
168343925 CCATATTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:168343999 original size:25 final size:25
Alignment explanation
Indices: 168343967--168344014 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
168343957 ATACATAAAC
* * *
168343967 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
168343992 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
168344015 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:168351579 original size:32 final size:31
Alignment explanation
Indices: 168351534--168351597 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
168351524 ATATTTCATA
168351534 TTCATAATACATATACACTGGGCCGAAGCCTT
1 TTCATAATACATAT-CACTGGGCCGAAGCCTT
* * *
168351566 TTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTCATAATACATATCACTGGGCCGAAGCCTT
168351597 T
1 T
168351598 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
31 17 0.59
32 12 0.41
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (31 bp):
TTCATAATACATATCACTGGGCCGAAGCCTT
Found at i:168351867 original size:47 final size:48
Alignment explanation
Indices: 168351788--168351924 Score: 197
Period size: 47 Copynumber: 2.9 Consensus size: 48
168351778 GCTTTATCAT
* *
168351788 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
168351837 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
168351884 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
168351925 ATAAGCCTTT
Statistics
Matches: 82, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
47 44 0.54
48 26 0.32
49 12 0.15
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:168351888 original size:71 final size:72
Alignment explanation
Indices: 168351787--168351924 Score: 208
Period size: 71 Copynumber: 1.9 Consensus size: 72
168351777 TGCTTTATCA
*
168351787 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
168351852 GCCCTTT
66 GCCCTTT
* * **
168351859 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
168351922 AGC
65 AGC
168351925 ATAAGCCTTT
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
71 47 0.78
72 13 0.22
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:168351931 original size:30 final size:24
Alignment explanation
Indices: 168351788--168351924 Score: 197
Period size: 24 Copynumber: 5.7 Consensus size: 24
168351778 GCTTTATCAT
* *
168351788 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
168351813 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
168351837 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
168351860 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
168351884 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
168351908 ATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGC
168351925 ATAAGCCTTT
Statistics
Matches: 105, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
23 23 0.22
24 70 0.67
25 12 0.11
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:168352011 original size:20 final size:20
Alignment explanation
Indices: 168351986--168352045 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
168351976 TATGATTACC
168351986 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
168352006 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATA
*
168352026 TCATGTGCATCTCATACATA
1 TCATGTGCATATCATACATA
168352046 CCATATTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:168352120 original size:25 final size:25
Alignment explanation
Indices: 168352088--168352135 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
168352078 ATACATAAAC
* * *
168352088 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
168352113 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
168352136 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:168361328 original size:49 final size:49
Alignment explanation
Indices: 168361275--168361683 Score: 749
Period size: 49 Copynumber: 8.5 Consensus size: 49
168361265 GATTTTATGC
168361275 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
168361324 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
168361371 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
*
168361420 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCAAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
168361469 GATGAATGTGAAAGTG--TATATATG-GATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
168361515 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
*
168361563 GATGAATGTGAAAGTGTATATATATATGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
*
168361612 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCAAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
168361661 GATGAATGTGAAAGTGTATATAT
1 GATGAATGTGAAAGTGTATATAT
168361684 GTTATAAAGC
Statistics
Matches: 349, Mismatches: 5, Indels: 12
0.95 0.01 0.03
Matches are distributed among these distances:
46 37 0.11
47 55 0.16
48 55 0.16
49 202 0.58
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:168361595 original size:192 final size:192
Alignment explanation
Indices: 168361275--168361701 Score: 768
Period size: 192 Copynumber: 2.2 Consensus size: 192
168361265 GATTTTATGC
168361275 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
168361340 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
64 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGATAAGG
168361405 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCAAATGGCCGATGT
129 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCAAATGGCCGATGT
168361469 GATGAATGTGAAAGTGTATATATG-GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
168361533 TATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTATATATATATGATAAGG
64 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGATAAGG
168361597 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCAAATGGCCGATGT
129 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCAAATGGCCGATGT
* * *
168361661 GATGAATGTGAAAGTGTATATATGTTATAAAGCCGAATGGC
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
168361702 TAATGTGAAA
Statistics
Matches: 226, Mismatches: 4, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
191 38 0.17
192 135 0.60
193 37 0.16
194 16 0.07
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.30
Consensus pattern (192 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCAAATGGCCGATGT
Found at i:168361733 original size:192 final size:190
Alignment explanation
Indices: 168361275--168361757 Score: 686
Period size: 192 Copynumber: 2.5 Consensus size: 190
168361265 GATTTTATGC
* * * *
168361275 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTG--TATATATG-GATAAAGCCGAATGGCCAATGTGA-GAATAT-AAAGTG
*
168361340 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
61 TATATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTATATATATATGATAA
168361403 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCAAATGGCCGATG
125 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCAAATGGCCGATG
168361468 T
190 T
* * * *
168361469 GATGAATGTGAAAGTGTATATATGGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 GATGAATGTGAAAGTGTATATATGGATAAAGCCGAATGGCCAATGTGA-GAATAT-AAAGTGTAT
168361534 ATATATGTGATAAGGCCTAATGGCGATGTGATGAATGTGAAAGTGTATATATATATGATAAGGCC
64 ATATATGTGATAAGGCCTAATGGCGATGTGATGAATGTGAAAGTGTATATATATATGATAAGGCC
168361599 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCAAATGGCCGATGT
129 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCAAATGGCCGATGT
* * *
168361661 GATGAATGTGAAAGTGTATATATGTTATAAAGCCGAATGGCTAATGTGA-AATAT-ATGTGTGAT
1 GATGAATGTGAAAGTGTATATATG-GATAAAGCCGAATGGCCAATGTGAGAATATAAAGTGT-AT
* * *
168361724 ATGTATATGTGGTAAAGCCGAATGGCGAATGTGA
64 A--TATATGTGATAAGGCCTAATGGCG-ATGTGA
168361758 AATATATATG
Statistics
Matches: 271, Mismatches: 11, Indels: 15
0.91 0.04 0.05
Matches are distributed among these distances:
189 5 0.02
190 3 0.01
191 42 0.15
192 156 0.58
193 49 0.18
194 16 0.06
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.30
Consensus pattern (190 bp):
GATGAATGTGAAAGTGTATATATGGATAAAGCCGAATGGCCAATGTGAGAATATAAAGTGTATAT
ATATGTGATAAGGCCTAATGGCGATGTGATGAATGTGAAAGTGTATATATATATGATAAGGCCTA
ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCAAATGGCCGATGT
Found at i:168361740 original size:48 final size:48
Alignment explanation
Indices: 168361679--168361854 Score: 262
Period size: 48 Copynumber: 3.7 Consensus size: 48
168361669 TGAAAGTGTA
** * * *
168361679 TATATGTTATAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATG
168361727 TATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATG
* *
168361775 TATATGTCGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATG
* * *
168361823 AATATGTGGTAAAGCCGTATGGCTAATGTGAA
1 TATATGTGGTAAAGCCGAATGGCGAATGTGAA
168361855 TGTTGTAACA
Statistics
Matches: 117, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 117 1.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATG
Found at i:168366207 original size:27 final size:27
Alignment explanation
Indices: 168366177--168366230 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
168366167 AGTTGTGGTG
* * *
168366177 GACTTCCCCATTTTTATTATCCCAACA
1 GACTACCCCATATTTAATATCCCAACA
* *
168366204 GACTACCCCGTATTTAATGTCCCAACA
1 GACTACCCCATATTTAATATCCCAACA
168366231 AAATACCCTG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.28, C:0.33, G:0.07, T:0.31
Consensus pattern (27 bp):
GACTACCCCATATTTAATATCCCAACA
Found at i:168366237 original size:27 final size:27
Alignment explanation
Indices: 168366196--168366252 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
168366186 ATTTTTATTA
* * *
168366196 TCCCAACAGACTACCCCGTATTTAATG
1 TCCCAACAAAATACCCCGTAATTAATG
*
168366223 TCCCAACAAAATACCCTGTAATTAATG
1 TCCCAACAAAATACCCCGTAATTAATG
168366250 TCC
1 TCC
168366253 TGATGGATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.32, G:0.09, T:0.26
Consensus pattern (27 bp):
TCCCAACAAAATACCCCGTAATTAATG
Found at i:168371438 original size:26 final size:26
Alignment explanation
Indices: 168371409--168371459 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
168371399 CAATTGGGCG
*
168371409 ACTTTCTCCTTTAGGCTTTATATTAC
1 ACTTTCTCCTTCAGGCTTTATATTAC
168371435 ACTTTCTCCTTCAGGCTTTATATTA
1 ACTTTCTCCTTCAGGCTTTATATTA
168371460 ATTTTTAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.20, C:0.24, G:0.08, T:0.49
Consensus pattern (26 bp):
ACTTTCTCCTTCAGGCTTTATATTAC
Found at i:168374303 original size:40 final size:40
Alignment explanation
Indices: 168374243--168374406 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
168374233 CGGGATTTAA
* ** *
168374243 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
168374283 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
*
168374323 CCAGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
168374363 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
168374403 CCGG
1 CCGG
168374407 GTATCATTCA
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:168382311 original size:40 final size:40
Alignment explanation
Indices: 168382251--168382414 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
168382241 TCGGATTTAA
* ** *
168382251 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
168382291 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
168382331 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
168382371 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
168382411 CCGG
1 CCGG
168382415 GTATCATTCA
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 100 0.95
41 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:168382398 original size:80 final size:80
Alignment explanation
Indices: 168382251--168382414 Score: 204
Period size: 80 Copynumber: 2.0 Consensus size: 80
168382241 TCGGATTTAA
* * ** * *
168382251 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
*
168382316 CCTTCGGGTCTTAGC
66 CCTTCGGGACTTAGC
** * * *
168382331 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
168382395 GCCTTCGGGACTTAGC
65 GCCTTCGGGACTTAGC
168382411 CCGG
1 CCGG
168382415 GTATCATTCA
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 69 0.97
81 2 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGGGACTTAGC
Found at i:168384369 original size:11 final size:10
Alignment explanation
Indices: 168384352--168384386 Score: 52
Period size: 11 Copynumber: 3.3 Consensus size: 10
168384342 AACAACCTAC
168384352 AAAATTAAAA
1 AAAATTAAAA
168384362 AGAAATTAAAA
1 A-AAATTAAAA
168384373 AAATATTAAAA
1 AAA-ATTAAAA
168384384 AAA
1 AAA
168384387 TCGTATCTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 3 0.13
11 20 0.87
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (10 bp):
AAAATTAAAA
Found at i:168390407 original size:68 final size:68
Alignment explanation
Indices: 168390258--168390415 Score: 160
Period size: 68 Copynumber: 2.3 Consensus size: 68
168390248 CTAGCCGATT
* * * * *
168390258 TATCTCGTAGCTCTCTTGTCTACATGGTATCCTTCACTTGGAATCACTCATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGGATACATCAC-TCGAATCACACATGCGACCTAGCTACA
*
168390323 TTTA
65 TATA
* * *
168390327 TCTCTTACGTAGCTCTCTTGTCTACATGGGATACATC-C-CGTATCACACATGTGACCTAGCTAC
1 TATC-T-CGTAGCTCTCTTGTCTACATGGGATACATCACTCGAATCACACATGCGACCTAGCTAC
168390390 TATATA
64 -ATATA
168390396 GTATCTCGTAGC-CTTCTTGT
1 -TATCTCGTAGCTC-TCTTGT
168390416 GCACATGATG
Statistics
Matches: 74, Mismatches: 10, Indels: 11
0.78 0.11 0.12
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 8 0.11
70 5 0.07
71 27 0.36
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGGATACATCACTCGAATCACACATGCGACCTAGCTACAT
ATA
Found at i:168392915 original size:2 final size:2
Alignment explanation
Indices: 168392908--168392937 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
168392898 CGGCTCTTGC
168392908 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
168392938 TTTGCACATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:168394549 original size:47 final size:47
Alignment explanation
Indices: 168394495--168394687 Score: 255
Period size: 47 Copynumber: 4.1 Consensus size: 47
168394485 TTAGGATTTT
** * *
168394495 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
168394542 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
168394589 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
168394636 ATGTGGTGAATATGAGATATG--TATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
168394682 ATGTGA
1 ATGTGA
168394688 AATATGTATG
Statistics
Matches: 130, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
46 26 0.20
47 101 0.78
48 3 0.02
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:168394595 original size:22 final size:22
Alignment explanation
Indices: 168394524--168394595 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
168394514 GTATATATGA
168394524 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
168394546 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
168394571 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
168394593 GAT
1 GAT
168394596 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:168394596 original size:94 final size:93
Alignment explanation
Indices: 168394495--168394873 Score: 270
Period size: 96 Copynumber: 4.0 Consensus size: 93
168394485 TTAGGATTTT
** * *
168394495 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA-AC
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAGAC
*
168394559 ATGCATATATGTGATAAGGCCGAATGGCCA
66 ATG--TATATGTGATAAAGCCGAATGGCCA
* * * * *
168394589 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAGAT
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAGAC
* *
168394654 ATGTATATGTGGTAAAGCCGAATGGCTA
66 ATGTATATGTGATAAAGCCGAATGGCCA
* ** * * * * *
168394682 ATGTGA-AATATGTATGAGGTATG--TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT-ATGT
1 ATGTGATGA-ATG--TGA-ACATGCATATATGAGATAAGGCCGAATGGCCAATGTG--ATGA-AT
* * *
168394743 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
59 ATGAGACATGTATATGTGATAAAGCCGAATGGCCA
* * * * * *
168394778 ATGTGA-GATATGTATGAGATATGCATATGTG-G-TAAAGCTGAATGGTCAATGTGAAATATATA
1 ATGTGATGA-ATG--TGA-ACATGCATATATGAGATAAGGCCGAATGGCCAATGTG--AT-GA-A
* *
168394840 TATGAGATATGTATATGTGGTAAAGCCGAATGGC
58 TATGAGACATGTATATGTGATAAAGCCGAATGGC
168394874 TAGTGTGAAA
Statistics
Matches: 246, Mismatches: 27, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
92 1 0.00
93 31 0.13
94 80 0.33
95 8 0.03
96 84 0.34
97 1 0.00
98 41 0.17
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (93 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAGAC
ATGTATATGTGATAAAGCCGAATGGCCA
Found at i:168394644 original size:25 final size:25
Alignment explanation
Indices: 168394569--168394644 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
168394559 ATGCATATAT
168394569 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
168394594 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
168394616 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
168394641 GTGA
1 GTGA
168394645 ATATGAGATA
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:168394705 original size:48 final size:48
Alignment explanation
Indices: 168394646--168394889 Score: 400
Period size: 48 Copynumber: 5.0 Consensus size: 48
168394636 ATGTGGTGAA
168394646 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
*
168394694 TATGAGGTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
*
168394742 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAGATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* * *
168394790 TATGAGATATGCATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATA
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATG
*
168394840 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
168394888 TA
1 TA
168394890 GGCGATGTGC
Statistics
Matches: 181, Mismatches: 11, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
47 1 0.01
48 136 0.75
49 3 0.02
50 40 0.22
51 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
Found at i:168394887 original size:98 final size:96
Alignment explanation
Indices: 168394564--168394889 Score: 407
Period size: 96 Copynumber: 3.4 Consensus size: 96
168394554 TGAACATGCA
* * * * * *
168394564 TATATGTGATAAGGCCGAATGGCCAATGTGATGA-ATG--TGAG-CATGCATATGTGTGATAAGG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGA-AATATGTATGAGATATGCATATGTG-G-TAAAG
* *
168394625 CCGAATGGCCAATGTG--GTGA-ATATGAGATATG
63 CCGAATGGCTAATGTGAAAT-ATATATGAGATATG
* *
168394657 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGGTATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
*
168394722 AATGGCTAATGTGAAATATGTATGAGATATG
66 AATGGCTAATGTGAAATATATATGAGATATG
* *
168394753 TATATGTGGTAAAGCCGAATGGCTAATGTGAGATATGTATGAGATATGCATATGTGGTAAAGCTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
168394818 AATGG-TCAATGTGAAATATATATATGAGATATG
66 AATGGCT-AATGTG-AA-ATATATATGAGATATG
*
168394851 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
168394890 GGCGATGTGC
Statistics
Matches: 206, Mismatches: 17, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
92 1 0.00
93 31 0.15
94 19 0.09
95 7 0.03
96 94 0.46
97 2 0.01
98 52 0.25
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
AATGGCTAATGTGAAATATATATGAGATATG
Found at i:168395086 original size:37 final size:37
Alignment explanation
Indices: 168395036--168395176 Score: 246
Period size: 37 Copynumber: 3.8 Consensus size: 37
168395026 GAAATATATT
*
168395036 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
168395073 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
*
168395110 CAGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
* *
168395147 CGGGTAAGACCCGATAACTTCGTGTGGAGA
1 CGGGTAAGACCCGATGACTACGTGTGGAGA
168395177 CTTCGCCTGA
Statistics
Matches: 99, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
Found at i:168396245 original size:40 final size:40
Alignment explanation
Indices: 168396190--168396496 Score: 473
Period size: 40 Copynumber: 7.8 Consensus size: 40
168396180 GACAATTGAG
168396190 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
168396230 AGTGATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
168396270 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
168396310 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
168396350 AGTGATGTATCC-GGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
168396389 AGTGATGTATTCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATA-TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
168396430 AGTG--ATGTCC-GGCTAAGT-TCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
168396466 GGTGTTATAT-CGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
168396497 ATCATGCTGG
Statistics
Matches: 249, Mismatches: 12, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
36 20 0.08
37 8 0.03
38 13 0.05
39 46 0.18
40 132 0.53
41 30 0.12
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:168400623 original size:40 final size:40
Alignment explanation
Indices: 168400564--168400705 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
168400554 AAATTGAATG
* * *
168400564 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
168400604 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
168400644 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
168400684 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
168400706 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:168400706 original size:40 final size:39
Alignment explanation
Indices: 168400603--168400731 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
168400593 TGCTGGAAAT
* * *
168400603 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
168400643 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
168400683 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
168400723 TATATCCGG
1 TATATCCGG
168400732 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:168408652 original size:40 final size:40
Alignment explanation
Indices: 168408593--168408734 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
168408583 AAATTGAATG
* * *
168408593 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
168408633 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
168408673 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
168408713 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
168408735 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:168408735 original size:40 final size:39
Alignment explanation
Indices: 168408632--168408760 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
168408622 TGCTGGAAAT
* * *
168408632 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
168408672 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
168408712 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
168408752 TATATCCGG
1 TATATCCGG
168408761 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:168416023 original size:9 final size:10
Alignment explanation
Indices: 168415984--168416016 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
168415974 AACTTAATAA
168415984 AAGA-AAAAT
1 AAGATAAAAT
*
168415993 AAAATAAAAT
1 AAGATAAAAT
168416003 AAGATAAAAT
1 AAGATAAAAT
168416013 AAGA
1 AAGA
168416017 CAAATAATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 3 0.14
10 18 0.86
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (10 bp):
AAGATAAAAT
Found at i:168417580 original size:2 final size:2
Alignment explanation
Indices: 168417573--168417598 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
168417563 TTCGGTTATG
168417573 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
168417599 CATAAGTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:168418083 original size:24 final size:24
Alignment explanation
Indices: 168418051--168418113 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
168418041 AATCTCAAAT
*
168418051 GCACTATGTGTGCGATTTATTATG
1 GCACTATGTGTGCGATTTACTATG
168418075 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
168418099 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
168418114 ACATAATAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:168425551 original size:46 final size:46
Alignment explanation
Indices: 168425483--168425595 Score: 167
Period size: 46 Copynumber: 2.5 Consensus size: 46
168425473 TATTTGGGCA
168425483 TCCGAACTCGTTGAG-TGAAGTCCGAGTTCACTTATGGATGCGAA-T
1 TCCGAACTCGTTGAGTTG-AGTCCGAGTTCACTTATGGATGCGAACT
168425528 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACT
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACT
* * *
168425575 CCCGAGCTCATTGAGTTGAGT
1 TCCGAACTCGTTGAGTTGAGT
168425596 TTGAGTTTGC
Statistics
Matches: 62, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
46 59 0.95
47 3 0.05
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACT
Found at i:168433687 original size:40 final size:40
Alignment explanation
Indices: 168433642--168433809 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
168433632 CGGAATATAA
168433642 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
168433682 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
168433722 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
168433762 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
168433802 CCGGATAT
1 CCGGATAT
168433810 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:168446831 original size:25 final size:25
Alignment explanation
Indices: 168446803--168446850 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
168446793 TTATACCATG
* * *
168446803 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
168446828 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
168446851 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:168446953 original size:20 final size:20
Alignment explanation
Indices: 168446893--168446953 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
168446883 ATAAATATGG
*
168446893 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
168446913 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
168446933 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
168446953 T
1 T
168446954 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:168447030 original size:24 final size:24
Alignment explanation
Indices: 168447003--168447145 Score: 191
Period size: 24 Copynumber: 6.0 Consensus size: 24
168446993 GAGGAAGTGA
168447003 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
168447027 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
168447051 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
168447074 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
168447098 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
168447122 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
168447146 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 21 0.19
24 79 0.71
25 11 0.10
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:168447103 original size:47 final size:48
Alignment explanation
Indices: 168447003--168447145 Score: 191
Period size: 47 Copynumber: 3.0 Consensus size: 48
168446993 GAGGAAGTGA
168447003 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
* * *
168447051 AAAAGGGCTTATGCCCCAGTTAT-GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
* * * *
168447098 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-CCAGTTAT
168447146 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
47 42 0.50
48 31 0.37
49 11 0.13
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
Found at i:168447120 original size:71 final size:72
Alignment explanation
Indices: 168447004--168447145 Score: 207
Period size: 71 Copynumber: 2.0 Consensus size: 72
168446994 AGGAAGTGAA
*
168447004 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-C
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCTC
168447067 CAGTTATG
65 CAGTTATG
* ** * *
168447075 AAAGGGCTTTTGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTCC
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTCC
168447140 AGTTAT
66 AGTTAT
168447146 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
71 52 0.83
72 11 0.17
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (72 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTCC
AGTTATG
Found at i:168454517 original size:46 final size:45
Alignment explanation
Indices: 168454450--168454616 Score: 174
Period size: 46 Copynumber: 3.6 Consensus size: 45
168454440 CGCCCCTAAG
*
168454450 TGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTC-GGCATTCGTATCCATAAA
* * * **
168454496 TGAACTCGGACTCAACTCAACGAGTTCGG-ATGCCTAGTTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGCATTCGTA--TCCAT-AAA
* * * * * *
168454543 CGAACTCGGACTCAACTCAATGAGTTCTGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTC-GGCATTCGTATCCATAAA
168454589 TGAACTCGGACTCAACTCAACGAGTTCG
1 TGAACTCGGACTCAACTCAACGAGTTCG
168454617 TGTAACACCC
Statistics
Matches: 97, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
44 5 0.05
45 3 0.03
46 55 0.57
47 30 0.31
48 1 0.01
49 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGCATTCGTATCCATAAA
Found at i:168469321 original size:10 final size:10
Alignment explanation
Indices: 168469306--168469349 Score: 52
Period size: 10 Copynumber: 4.1 Consensus size: 10
168469296 AGTAAGTTAA
168469306 AAAGATAAAT
1 AAAGATAAAT
168469316 AAAGATAAAAAT
1 AAAGAT--AAAT
*
168469328 AAAAATAAAT
1 AAAGATAAAT
168469338 AAAAGATAAAT
1 -AAAGATAAAT
168469349 A
1 A
168469350 GTAGGGGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
10 11 0.38
11 9 0.31
12 9 0.31
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.18
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:168471773 original size:38 final size:38
Alignment explanation
Indices: 168471722--168471844 Score: 203
Period size: 38 Copynumber: 3.3 Consensus size: 38
168471712 GCCTGGTATT
*
168471722 TGGAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
168471760 TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
1 TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
* *
168471798 TGGAATATATCCGGACTTGAGGTCCACAGGCTATGTGC
1 TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
*
168471836 TAGAA-ATAT
1 TGGAACATAT
168471845 ATTCGGGCCT
Statistics
Matches: 81, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
37 4 0.05
38 77 0.95
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (38 bp):
TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
Found at i:168475315 original size:40 final size:39
Alignment explanation
Indices: 168475125--168475315 Score: 161
Period size: 40 Copynumber: 4.8 Consensus size: 39
168475115 GGATATAACG
* ** * *
168475125 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGCA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
168475165 ACTCGCACGAATGCCTTCGGGACTTAACTCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
168475205 ACTTGCACAATGCTTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
168475243 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATATAGTA
* *
168475283 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
168475316 CATCATTCGA
Statistics
Matches: 120, Mismatches: 26, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
38 23 0.19
39 19 0.16
40 70 0.58
41 8 0.07
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:168483257 original size:39 final size:39
Alignment explanation
Indices: 168483126--168483316 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
168483116 GGATATAACG
* ** **
168483126 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
168483166 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
168483206 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
168483244 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
168483284 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
168483317 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:168483261 original size:78 final size:80
Alignment explanation
Indices: 168483166--168483316 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
168483156 GGTTATAGCG
* * * *
168483166 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
168483228 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
168483244 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
168483309 AGCCCGGA
66 AGCCCGGA
168483317 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:168485713 original size:15 final size:15
Alignment explanation
Indices: 168485693--168485761 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
168485683 GTATCTTGGG
168485693 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
168485708 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
168485723 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
168485738 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
168485753 TTTCTTTAT
1 TTTCTTTAT
168485762 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:168485762 original size:30 final size:30
Alignment explanation
Indices: 168485684--168485771 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
168485674 CATAGTATCG
* * * *
168485684 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
168485714 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
168485744 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
168485772 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:168488205 original size:46 final size:46
Alignment explanation
Indices: 168488152--168488327 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
168488142 TATTTGGGCA
168488152 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
168488198 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
168488245 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
168488291 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
168488328 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:168488307 original size:93 final size:93
Alignment explanation
Indices: 168488148--168488319 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
168488138 GGGATATTTG
* *
168488148 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
168488213 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
168488241 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
168488306 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
168488320 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:168492678 original size:80 final size:80
Alignment explanation
Indices: 168492594--168492742 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
168492584 TATGGTAACC
* * * *
168492594 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
168492658 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
168492674 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
168492739 CCGG
66 CCGG
168492743 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:168492684 original size:40 final size:38
Alignment explanation
Indices: 168492635--168492742 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
168492625 ATCACGATTT
*
168492635 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
168492675 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
168492715 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
168492743 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:168500796 original size:80 final size:80
Alignment explanation
Indices: 168500712--168500860 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
168500702 TATGGTAACC
* * * *
168500712 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
168500776 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
168500792 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
168500857 CCGG
66 CCGG
168500861 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:168500802 original size:40 final size:38
Alignment explanation
Indices: 168500753--168500860 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
168500743 ATCACGATTT
*
168500753 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
168500793 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
168500833 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
168500861 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:168502720 original size:15 final size:15
Alignment explanation
Indices: 168502700--168502768 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
168502690 GTATCTTGGG
168502700 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
168502715 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
168502730 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
168502745 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
168502760 TTTCTTTAT
1 TTTCTTTAT
168502769 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:168502769 original size:30 final size:30
Alignment explanation
Indices: 168502691--168502778 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
168502681 CATAGTATCG
* * * *
168502691 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
168502721 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
168502751 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
168502779 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:168505216 original size:46 final size:46
Alignment explanation
Indices: 168505163--168505338 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
168505153 TATTTGGGCA
168505163 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
168505209 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
168505256 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
168505302 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
168505339 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:168505318 original size:93 final size:93
Alignment explanation
Indices: 168505159--168505330 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
168505149 GGGATATTTG
* *
168505159 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
168505224 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
168505252 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
168505317 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
168505331 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:168517892 original size:80 final size:80
Alignment explanation
Indices: 168517808--168517956 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
168517798 TATGGTAACC
* * * *
168517808 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
168517872 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
168517888 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
168517953 CCGG
66 CCGG
168517957 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:168517898 original size:40 final size:38
Alignment explanation
Indices: 168517849--168517956 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
168517839 ATCACGATTT
*
168517849 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
168517889 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
168517929 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
168517957 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:168526005 original size:80 final size:80
Alignment explanation
Indices: 168525921--168526069 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
168525911 TATGGTAACC
* * * *
168525921 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
168525985 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
168526001 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
168526066 CCGG
66 CCGG
168526070 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:168526011 original size:40 final size:38
Alignment explanation
Indices: 168525962--168526069 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
168525952 ATCACGATTT
*
168525962 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
168526002 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
168526042 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
168526070 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:168528967 original size:39 final size:40
Alignment explanation
Indices: 168528919--168529022 Score: 106
Period size: 40 Copynumber: 2.6 Consensus size: 40
168528909 GACTCGCTCG
* * *
168528919 ATTGTCTTC-GGACATAGCCCGG-TTATAGTGATTCACACA
1 ATTGCCTTCGGGACATAGCCCGGATT-TAGTAACTCACACA
*
168528958 ATTGCCTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACA
1 ATTGCCTTCGGGACA-TAGCCCGGATTTAGTAACTCACACA
** *
168528998 AAAGCCTTCGGGACTTAGCCCGGAT
1 ATTGCCTTCGGGACATAGCCCGGAT
168529023 ACCATTCGAA
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
39 9 0.17
40 43 0.80
41 2 0.04
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
ATTGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACA
Found at i:168529727 original size:40 final size:40
Alignment explanation
Indices: 168529678--168529905 Score: 368
Period size: 40 Copynumber: 5.7 Consensus size: 40
168529668 CCAGCATGAT
* *
168529678 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
168529718 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * *
168529758 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
168529798 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
168529838 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
168529878 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGAACTTAGCCCGGATACATC
168529906 GTCGAGACCT
Statistics
Matches: 177, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 3 0.02
40 174 0.98
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:168532537 original size:47 final size:47
Alignment explanation
Indices: 168532462--168532572 Score: 161
Period size: 47 Copynumber: 2.4 Consensus size: 47
168532452 CCCCTCGGGA
* * *
168532462 CTTATCACATT-TATACACTTTCATATTCATCGCATTGGCCATTCGGC
1 CTTATCAC-TTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
168532509 CTTATCACTTATATACACTTTGACATTCATCACATCGGCCATTCGGC
1 CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
168532556 CTTATCACATATATACA
1 CTTATCACTTATATACA
168532573 TCTCATACAT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 2 0.03
47 56 0.97
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.36
Consensus pattern (47 bp):
CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:168532628 original size:46 final size:46
Alignment explanation
Indices: 168532576--168532757 Score: 337
Period size: 46 Copynumber: 4.0 Consensus size: 46
168532566 ATATACATCT
* * *
168532576 CATACATGTTTCATACTAGCCATTTGGCTTTACCACACATATATCT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
168532622 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
168532668 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
168532714 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
168532758 ATATTTAACT
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 133 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.34
Consensus pattern (46 bp):
CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
Found at i:168538292 original size:40 final size:39
Alignment explanation
Indices: 168538127--168538310 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
168538117 AAATTGAATG
* * *
168538127 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
168538167 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
168538207 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
168538247 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
168538286 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
168538311 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:168538335 original size:80 final size:81
Alignment explanation
Indices: 168538167--168538355 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
168538157 GCTGGAAATT
* * * *
168538167 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
168538232 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
168538248 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
168538311 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
168538327 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
168538356 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:168541378 original size:40 final size:40
Alignment explanation
Indices: 168541297--168541477 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
168541287 AAACCAAGTA
** * *
168541297 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
168541336 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
168541376 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
168541416 CCTTTGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
168541456 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
168541478 CAATCCGAAT
Statistics
Matches: 130, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 26 0.20
40 104 0.80
ACGTcount: A:0.20, C:0.27, G:0.24, T:0.28
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:168546569 original size:40 final size:40
Alignment explanation
Indices: 168546512--168546652 Score: 131
Period size: 40 Copynumber: 3.5 Consensus size: 40
168546502 TGAATGATAC
* * * *
168546512 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATGT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATAT
* * **
168546552 CTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTTTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATAT
* * * ** *
168546592 CCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGC-ATTCATGCGAGTGATTATAT
*
168546632 CCGGGTTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
168546653 ATTGTGCTTG
Statistics
Matches: 85, Mismatches: 15, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 81 0.95
41 3 0.04
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATAT
Found at i:168546653 original size:40 final size:40
Alignment explanation
Indices: 168546554--168546659 Score: 142
Period size: 40 Copynumber: 2.6 Consensus size: 40
168546544 GATTATGTCT
* *** *
168546554 GGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTTTTATATCC
1 GGGCTAAGACCCGAAGGCAATT-GTGCAAGTTACCAAATCC
168546594 GGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAATCC
1 GGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAATCC
*
168546634 GGGTTAAGACCCGAAGGCAATTGTGC
1 GGGCTAAGACCCGAAGGCAATTGTGC
168546660 TTGTGGTTAT
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
40 56 0.95
41 3 0.05
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAATCC
Found at i:168551323 original size:2 final size:2
Alignment explanation
Indices: 168551316--168551342 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
168551306 TTATTTGATG
168551316 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
168551343 CGGCAATGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:168551705 original size:2 final size:2
Alignment explanation
Indices: 168551700--168551732 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
168551690 CATATATAGG
168551700 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
168551733 GTATGCCTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:168553726 original size:2 final size:2
Alignment explanation
Indices: 168553719--168553758 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
168553709 TATTCGAAGG
168553719 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
168553759 AGACAGCCAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:168558545 original size:40 final size:40
Alignment explanation
Indices: 168558490--168558653 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
168558480 TGAATGATAC
* * * *
168558490 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATGT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
168558530 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
168558570 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
168558610 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
168558650 CCGG
1 CCGG
168558654 TTAAATCTCG
Statistics
Matches: 102, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.03
40 94 0.92
41 5 0.05
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:168562901 original size:39 final size:39
Alignment explanation
Indices: 168562820--168562982 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
168562810 TATGGTAACC
* *
168562820 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
168562860 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
168562899 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
168562938 CGCACAATTGCCTTCGGGCTTGGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
168562977 CGCACA
1 CGCACA
168562983 TACATTCACA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 98 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:168564609 original size:93 final size:93
Alignment explanation
Indices: 168564497--168564667 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
168564487 GCCCATAAGT
* *
168564497 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
168564562 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
168564590 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
168564655 CGAGTTCGGATGC
66 CGAGTTCGGATGC
168564668 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Done.