Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 542 of 770
Found at i:168564683 original size:46 final size:46
Alignment explanation
Indices: 168564489--168564669 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
168564479 TGTAACCCGC
* * *
168564489 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
168564535 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
168564585 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
168564628 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
168564670 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:168567090 original size:30 final size:30
Alignment explanation
Indices: 168567046--168567134 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
168567036 CAAAGATAAC
168567046 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
168567075 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
168567105 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
168567135 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:168567094 original size:15 final size:15
Alignment explanation
Indices: 168567046--168567125 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
168567036 CAAAGATAAC
*
168567046 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
168567060 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
168567075 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
168567090 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
168567105 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
168567120 AAGAAA
1 AAGAAA
168567126 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:168567134 original size:15 final size:15
Alignment explanation
Indices: 168567057--168567134 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
168567047 AGAAAACCGA
168567057 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
168567072 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
168567086 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
168567101 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
168567117 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
168567132 ATA
1 ATA
168567135 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:168569085 original size:17 final size:18
Alignment explanation
Indices: 168569043--168569091 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
168569033 AGTTGAAAAG
168569043 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
168569062 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
168569079 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
168569092 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:168569980 original size:40 final size:40
Alignment explanation
Indices: 168569914--168570080 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
168569904 AAATTGAATG
* * *
168569914 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
168569953 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
168569993 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
168570033 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
168570073 ATATCCGG
1 ATATCCGG
168570081 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:168575237 original size:26 final size:25
Alignment explanation
Indices: 168575196--168575294 Score: 90
Period size: 27 Copynumber: 3.7 Consensus size: 25
168575186 TTTAGAGTGC
*
168575196 ACCACAAGGGCATTCCTTTCATAGAT
1 ACCACAAAGGC-TTCCTTTCATAGAT
* *
168575222 CACCACGAAGGCTTCCTTGTTATAGAT
1 -ACCACAAAGGCTTCCTT-TCATAGAT
** *
168575249 AGCCACAAAGATTTTCTTTTCATAGAT
1 A-CCACAAAG-GCTTCCTTTCATAGAT
168575276 ACGCACAAAGGCTTCCTTT
1 AC-CACAAAGGCTTCCTTT
168575295 TCATTGATGG
Statistics
Matches: 57, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
26 14 0.25
27 38 0.67
28 5 0.09
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (25 bp):
ACCACAAAGGCTTCCTTTCATAGAT
Found at i:168575246 original size:27 final size:27
Alignment explanation
Indices: 168575171--168575256 Score: 67
Period size: 27 Copynumber: 3.2 Consensus size: 27
168575161 CTAATAGGTG
*
168575171 CCACAAGGGTCATT-CTTT-AGAG-TGCA
1 CCACAAGGG-CATTCCTTTCATAGAT-CA
168575197 CCACAAGGGCATTCCTTTCATAGATCA
1 CCACAAGGGCATTCCTTTCATAGATCA
*
168575224 CCACGAA-GGC-TTCCTTGTTATAGAT-A
1 CCAC-AAGGGCATTCCTT-TCATAGATCA
168575250 GCCACAA
1 -CCACAA
168575257 AGATTTTCTT
Statistics
Matches: 52, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
25 4 0.08
26 22 0.42
27 23 0.44
28 3 0.06
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (27 bp):
CCACAAGGGCATTCCTTTCATAGATCA
Found at i:168575273 original size:27 final size:27
Alignment explanation
Indices: 168575243--168575375 Score: 96
Period size: 27 Copynumber: 4.9 Consensus size: 27
168575233 CTTCCTTGTT
168575243 ATAGATAGCCACAAAGATTTTCTTTTC
1 ATAGATAGCCACAAAGATTTTCTTTTC
** *
168575270 ATAGATA-CGCACAAAGGCTTCCTTTTC
1 ATAGATAGC-CACAAAGATTTTCTTTTC
* * * * *
168575297 ATTGATGGCCATAAAGACTTAT-GTTTC
1 ATAGATAGCCACAAAGA-TTTTCTTTTC
*
168575324 TTAGATCA-CCACAAA-ATATTTCTTTTC
1 ATAGAT-AGCCACAAAGAT-TTTCTTTTC
*
168575351 ATAGATAGACACAAAGCA-TTTCTTT
1 ATAGATAGCCACAAAG-ATTTTCTTT
168575376 CCTTAGATCG
Statistics
Matches: 78, Mismatches: 19, Indels: 18
0.68 0.17 0.16
Matches are distributed among these distances:
25 1 0.01
26 5 0.06
27 69 0.88
28 2 0.03
29 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (27 bp):
ATAGATAGCCACAAAGATTTTCTTTTC
Found at i:168577028 original size:104 final size:104
Alignment explanation
Indices: 168576892--168577100 Score: 364
Period size: 104 Copynumber: 2.0 Consensus size: 104
168576882 AAGATAGCAG
* *
168576892 ATTTTGGTCTCGGTTTACACTATAAGCATAGCACAACTGGCTCTGATACTAAATGTTGGAAAAAA
1 ATTTTGGTCTCGATTTACACTATAAGCATAGCACAACTGGCTCTAATACTAAATGTTGGAAAAAA
* *
168576957 TCTACTTTGAAAATGATTTTCTTGCACAATAAAAAATAA
66 TCTAATTTAAAAATGATTTTCTTGCACAATAAAAAATAA
**
168576996 ATTTTGGTCTCGATTTATGCTATAAGCATAGCACAACTGGCTCTAATACTAAATGTTGGAAAAAA
1 ATTTTGGTCTCGATTTACACTATAAGCATAGCACAACTGGCTCTAATACTAAATGTTGGAAAAAA
168577061 TCTAATTTAAAAATGATTTTCTTGCACAATAAAAAATAA
66 TCTAATTTAAAAATGATTTTCTTGCACAATAAAAAATAA
168577100 A
1 A
168577101 AATTTTGAAA
Statistics
Matches: 99, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
104 99 1.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.33
Consensus pattern (104 bp):
ATTTTGGTCTCGATTTACACTATAAGCATAGCACAACTGGCTCTAATACTAAATGTTGGAAAAAA
TCTAATTTAAAAATGATTTTCTTGCACAATAAAAAATAA
Found at i:168582056 original size:56 final size:58
Alignment explanation
Indices: 168581922--168582059 Score: 147
Period size: 56 Copynumber: 2.4 Consensus size: 58
168581912 GGCTATCATA
* * ** * * *
168581922 ACATCTTTCATCTATGGTCTTACACCGTATATCTTATACCATTTACCTTGTTGTCATG
1 ACATCTTTCATCAATGGTCTTACACCCTATATCTTATACCAAGTACCATGTTGCCAAG
* * *
168581980 ACGTCTTTCATCAATTGTCTTACGCCCT-TATCATT-T-CCAAGTACCATGTTGCCAAG
1 ACATCTTTCATCAATGGTCTTACACCCTATATC-TTATACCAAGTACCATGTTGCCAAG
*
168582036 ACATCTTTCATCCATGGTCTTACA
1 ACATCTTTCATCAATGGTCTTACA
168582060 TTATGTACCA
Statistics
Matches: 65, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
56 35 0.54
57 5 0.08
58 25 0.38
ACGTcount: A:0.23, C:0.27, G:0.11, T:0.39
Consensus pattern (58 bp):
ACATCTTTCATCAATGGTCTTACACCCTATATCTTATACCAAGTACCATGTTGCCAAG
Found at i:168582093 original size:51 final size:51
Alignment explanation
Indices: 168582029--168582159 Score: 174
Period size: 51 Copynumber: 2.6 Consensus size: 51
168582019 AGTACCATGT
* *
168582029 TGCCA-AGACATCTTTCATCCATGGTCTTACATTATGTACCATATACCAGAC
1 TGCCATAG-CATCTTTCATCCATGGTCTTACACTATATACCATATACCAGAC
* * *
168582080 TGCCATAGCATCTTTCATCCATGATCTTACGCTATATACCATATACTAGAC
1 TGCCATAGCATCTTTCATCCATGGTCTTACACTATATACCATATACCAGAC
* * *
168582131 TGTCATAGCCTCTTTCATCTATGGTCTTA
1 TGCCATAGCATCTTTCATCCATGGTCTTA
168582160 TGCCATATAT
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
51 68 0.97
52 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.35
Consensus pattern (51 bp):
TGCCATAGCATCTTTCATCCATGGTCTTACACTATATACCATATACCAGAC
Found at i:168585692 original size:69 final size:70
Alignment explanation
Indices: 168585560--168585692 Score: 223
Period size: 69 Copynumber: 1.9 Consensus size: 70
168585550 TAGTTTATTA
* * * *
168585560 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
168585625 CTTAG
66 CTTAG
168585630 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
168585693 GTTATGTGCT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 36 0.61
70 23 0.39
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:168587066 original size:47 final size:47
Alignment explanation
Indices: 168587015--168587309 Score: 455
Period size: 47 Copynumber: 6.3 Consensus size: 47
168587005 ACAAGATATG
*
168587015 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* *
168587062 TATATGTGATAAGGCCGAGTGGCCAATATGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
168587109 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * *
168587156 TATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGGAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
168587203 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * * *
168587250 TATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
168587297 TAAATGTGATAAG
1 TATATGTGATAAG
168587310 TCCCGAAGGG
Statistics
Matches: 228, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 228 1.00
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
Found at i:168589508 original size:40 final size:40
Alignment explanation
Indices: 168589427--168589607 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
168589417 AAACCAAGTA
** * *
168589427 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
168589466 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
168589506 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
168589546 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
168589586 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
168589608 CAATCCGAAT
Statistics
Matches: 130, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 26 0.20
40 104 0.80
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:168596161 original size:18 final size:18
Alignment explanation
Indices: 168596134--168596194 Score: 53
Period size: 18 Copynumber: 3.6 Consensus size: 18
168596124 TTTTTCAAGT
168596134 TTTA-TTTTAGAACTTCA
1 TTTAGTTTTAGAACTTCA
168596151 TTTAGTTTTAG---TT--
1 TTTAGTTTTAGAACTTCA
*
168596164 TTTAGTTTTTTATAACTTCA
1 TTTAG--TTTTAGAACTTCA
168596184 TTTAGTTTTAG
1 TTTAGTTTTAG
168596195 TTTTTAGTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 15
0.67 0.04 0.29
Matches are distributed among these distances:
13 5 0.15
15 7 0.21
17 4 0.12
18 13 0.38
20 5 0.15
ACGTcount: A:0.23, C:0.07, G:0.10, T:0.61
Consensus pattern (18 bp):
TTTAGTTTTAGAACTTCA
Found at i:168596181 original size:33 final size:33
Alignment explanation
Indices: 168596138--168596205 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
168596128 TCAAGTTTTA
168596138 TTTTAGAACTTCATTTAGTTTTAGTTTTTAGTT
1 TTTTAGAACTTCATTTAGTTTTAGTTTTTAGTT
*
168596171 TTTTATAACTTCATTTAGTTTTAGTTTTTAGTT
1 TTTTAGAACTTCATTTAGTTTTAGTTTTTAGTT
168596204 TT
1 TT
168596206 CTTTAGTTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.21, C:0.06, G:0.10, T:0.63
Consensus pattern (33 bp):
TTTTAGAACTTCATTTAGTTTTAGTTTTTAGTT
Found at i:168601786 original size:23 final size:23
Alignment explanation
Indices: 168601758--168601814 Score: 62
Period size: 26 Copynumber: 2.4 Consensus size: 23
168601748 GAATGAGCAT
* *
168601758 ATAATAAAAAAATATGATATTTA
1 ATAATAAAAAAATATAATATATA
168601781 ATAATAAATTTAAAATATAATATATA
1 ATAATAAA---AAAATATAATATATA
168601807 ATAA-AAAA
1 ATAATAAAA
168601815 TATATTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
22 1 0.03
23 8 0.28
25 3 0.10
26 17 0.59
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
ATAATAAAAAAATATAATATATA
Found at i:168601795 original size:26 final size:26
Alignment explanation
Indices: 168601766--168601815 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
168601756 ATATAATAAA
* * *
168601766 AAAATATGATATTTAATAATAAATTT
1 AAAATATAATATATAATAAAAAATTT
168601792 AAAATATAATATATAATAAAAAAT
1 AAAATATAATATATAATAAAAAAT
168601816 ATATTTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (26 bp):
AAAATATAATATATAATAAAAAATTT
Found at i:168602118 original size:3 final size:3
Alignment explanation
Indices: 168602105--168602333 Score: 70
Period size: 3 Copynumber: 74.0 Consensus size: 3
168602095 TAAAAACCTT
* * * *
168602105 TAA TGA TAA TAA TATA TAGA TAA AAA TGTA TAA TAA T-A TAA -AA AAA
1 TAA TAA TAA TAA TA-A TA-A TAA TAA T-AA TAA TAA TAA TAA TAA TAA
*
168602151 TGACA TAA TAA TATA TAA TAA -AA TAA TTA TAA TATA TAA T-A TAA -AA
1 T-A-A TAA TAA TA-A TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
* * *
168602197 GTATA TATG TAA AAA TAA TATA TAA T-A TATA TAAA TAA TAA T-G TAA
1 -TA-A TA-A TAA TAA TAA TA-A TAA TAA TA-A T-AA TAA TAA TAA TAA
** *
168602243 -AA TAA TAA TAA TTTG TGAA AAA TAA TATA TAA TAAA TAA TAA T-A TAAA
1 TAA TAA TAA TAA -TAA T-AA TAA TAA TA-A TAA T-AA TAA TAA TAA T-AA
* *
168602291 TAT TATA TAA TAA -AA TAA TTA T-A TAA TATA TAA T-A TAA -AA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
168602334 GGTTAAAAAT
Statistics
Matches: 170, Mismatches: 25, Indels: 62
0.66 0.10 0.24
Matches are distributed among these distances:
2 25 0.15
3 98 0.58
4 43 0.25
5 4 0.02
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:168602137 original size:21 final size:20
Alignment explanation
Indices: 168602113--168602231 Score: 88
Period size: 20 Copynumber: 5.8 Consensus size: 20
168602103 TTTAATGATA
168602113 ATAATATATAGATAAAAATGT
1 ATAATATATA-ATAAAAATGT
168602134 ATAATAATATAA-AAAAATGACAT
1 ATAAT-ATATAATAAAAATG---T
168602157 AATAATATATAATAAAATAAT-T
1 -ATAATATATAAT-AAA-AATGT
168602179 ATAATATATAATATAAAA-GT
1 ATAATATATAATA-AAAATGT
* *
168602199 AT-ATATGTAA-AAATAATAT
1 ATAATATATAATAAA-AATGT
168602218 ATAATATAT-ATAAA
1 ATAATATATAATAAA
168602232 TAATAATGTA
Statistics
Matches: 81, Mismatches: 3, Indels: 29
0.72 0.03 0.26
Matches are distributed among these distances:
17 2 0.02
18 3 0.04
19 11 0.14
20 21 0.26
21 20 0.25
22 6 0.07
23 7 0.09
24 5 0.06
25 3 0.04
26 3 0.04
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (20 bp):
ATAATATATAATAAAAATGT
Found at i:168602170 original size:7 final size:7
Alignment explanation
Indices: 168602158--168602332 Score: 97
Period size: 7 Copynumber: 25.9 Consensus size: 7
168602148 AAATGACATA
168602158 ATAATAT
1 ATAATAT
*
168602165 ATAATAAA
1 ATAAT-AT
168602173 ATAAT-T
1 ATAATAT
168602179 ATAATAT
1 ATAATAT
168602186 ATAATAT
1 ATAATAT
168602193 A-AA-AGT
1 ATAATA-T
168602199 AT-ATAT
1 ATAATAT
* *
168602205 GTAA-AA
1 ATAATAT
168602211 ATAATAT
1 ATAATAT
168602218 ATAATAT
1 ATAATAT
*
168602225 AT-ATAA
1 ATAATAT
168602231 ATAATAAT
1 ATAAT-AT
*
168602239 GTAA-A-
1 ATAATAT
168602244 ATAATA-
1 ATAATAT
*
168602250 ATAATTT
1 ATAATAT
* *
168602257 GTGAA-AA
1 AT-AATAT
168602264 ATAATAT
1 ATAATAT
*
168602271 ATAATAA
1 ATAATAT
168602278 ATAATAAT
1 ATAAT-AT
168602286 ATAA-AT
1 ATAATAT
168602292 AT--TAT
1 ATAATAT
*
168602297 ATAATAAA
1 ATAAT-AT
168602305 ATAATTAT
1 ATAA-TAT
168602313 ATAATAT
1 ATAATAT
168602320 ATAATAT
1 ATAATAT
*
168602327 AAAATA
1 ATAATA
168602333 AGGTTAAAAA
Statistics
Matches: 128, Mismatches: 21, Indels: 38
0.68 0.11 0.20
Matches are distributed among these distances:
5 8 0.06
6 34 0.27
7 58 0.45
8 27 0.21
9 1 0.01
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (7 bp):
ATAATAT
Found at i:168602184 original size:66 final size:61
Alignment explanation
Indices: 168602113--168602330 Score: 172
Period size: 66 Copynumber: 3.3 Consensus size: 61
168602103 TTTAATGATA
168602113 ATAATATATAGATA-AAAATGTATAATAATATAAAAA-AATGACATAATAATATATAATAAAATA
1 ATAATATATA-ATATAAAA-GTAT-AT-ATATAAAAATAAT-ACATAAT-ATATATAA-AAAATA
168602176 ATT
59 ATT
* * *
168602179 ATAATATATAATATAAAAGTATATATGTAAAAATAATATATAATATATATAAATAATAATGT
1 ATAATATATAATATAAAAGTATATATATAAAAATAATACATAATATATATAAAAAATAAT-T
* * * *
168602241 AAAATAATAATAATTTGTGAAAAATA-ATATATAATAAATAATAATATAAATATTATATAATAAA
1 ATAAT-AT-ATAA--TAT-AAAAGTATATATATAA-AAATAAT-ACAT-AATA-TATATAA-AAA
168602305 ATAATTAT
56 ATAA-T-T
168602313 ATAATATATAATATAAAA
1 ATAATATATAATATAAAA
168602331 TAAGGTTAAA
Statistics
Matches: 127, Mismatches: 11, Indels: 27
0.77 0.07 0.16
Matches are distributed among these distances:
61 7 0.06
62 13 0.10
63 16 0.13
64 9 0.07
65 7 0.06
66 23 0.18
67 17 0.13
68 6 0.05
69 4 0.03
70 11 0.09
71 8 0.06
72 6 0.05
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (61 bp):
ATAATATATAATATAAAAGTATATATATAAAAATAATACATAATATATATAAAAAATAATT
Found at i:168602192 original size:26 final size:24
Alignment explanation
Indices: 168602134--168602196 Score: 74
Period size: 23 Copynumber: 2.6 Consensus size: 24
168602124 ATAAAAATGT
*
168602134 ATAATAATATAAAAAAATGACATA
1 ATAATAATATAAAAAAATAACATA
* *
168602158 ATAAT-ATATAATAAAATAATTATA
1 ATAATAATATAAAAAAATAA-CATA
168602182 ATATATAATATAAAA
1 ATA-ATAATATAAAA
168602197 GTATATATGT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 12 0.38
24 11 0.34
25 2 0.06
26 7 0.22
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (24 bp):
ATAATAATATAAAAAAATAACATA
Found at i:168602218 original size:32 final size:33
Alignment explanation
Indices: 168602179--168602327 Score: 105
Period size: 32 Copynumber: 4.5 Consensus size: 33
168602169 TAAAATAATT
*
168602179 ATAATATATAATATA-A-AAGT-ATATATGTAAAA
1 ATAATATATAATATATATAAATAATA-ATGT-AAA
168602211 ATAATATATAATATATATAAATAATAATGTAAA
1 ATAATATATAATATATATAAATAATAATGTAAA
* * * *
168602244 ATAATA-ATAATTTGTGAAAAATAATATAT-AATAA
1 ATAATATATAATATAT-ATAAATAATA-ATGTA-AA
* *
168602278 ATAATAATATAAATATTATATAATAAAATAAT-T-AT
1 ATAAT-ATAT-AATA-TATATAA-ATAATAATGTAAA
168602313 ATAATATATAATATA
1 ATAATATATAATATA
168602328 AAATAAGGTT
Statistics
Matches: 95, Mismatches: 11, Indels: 22
0.74 0.09 0.17
Matches are distributed among these distances:
32 24 0.25
33 24 0.25
34 20 0.21
35 10 0.11
36 2 0.02
37 8 0.08
38 7 0.07
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (33 bp):
ATAATATATAATATATATAAATAATAATGTAAA
Found at i:168602222 original size:53 final size:53
Alignment explanation
Indices: 168602157--168602307 Score: 154
Period size: 53 Copynumber: 2.9 Consensus size: 53
168602147 AAAATGACAT
168602157 AATAATATATAATAAAATAATTATAATATATAATATAA-AAGTATATATGT-AAA
1 AATAATATATAATAAAATAATTATAATATATAATATAATAA-TA-ATATGTGAAA
* * * *
168602210 AATAATATATAATATATATAA--ATAATAATGTAAAATAATAATAATTTGTGAAA
1 AATAATATATAATA-AAATAATTATAAT-ATATAATATAATAATAATATGTGAAA
*
168602263 AATAATATATAAT-AAATAATAATATAA-ATATTATATAATAA-AATA
1 AATAATATATAATAAAATAAT--TATAATATATAATATAATAATAATA
168602308 ATTATATAAT
Statistics
Matches: 81, Mismatches: 9, Indels: 17
0.76 0.08 0.16
Matches are distributed among these distances:
51 5 0.06
52 13 0.16
53 52 0.64
54 7 0.09
55 4 0.05
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (53 bp):
AATAATATATAATAAAATAATTATAATATATAATATAATAATAATATGTGAAA
Found at i:168602250 original size:20 final size:19
Alignment explanation
Indices: 168602209--168602276 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 19
168602199 ATATATGTAA
* *
168602209 AAATAATATATAATATATAT
1 AAATAATATGTAAAATA-AT
168602229 AAATAATAATGTAAAATAAT
1 AAATAAT-ATGTAAAATAAT
*
168602249 -AATAATTTGTGAAAAATAAT
1 AAATAATATGT--AAAATAAT
*
168602269 ATATAATA
1 AAATAATA
168602277 AATAATAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
18 3 0.08
19 6 0.15
20 17 0.44
21 13 0.33
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.35
Consensus pattern (19 bp):
AAATAATATGTAAAATAAT
Found at i:168602298 original size:11 final size:12
Alignment explanation
Indices: 168602134--168602329 Score: 67
Period size: 14 Copynumber: 16.1 Consensus size: 12
168602124 ATAAAAATGT
168602134 ATAATAATATAA
1 ATAATAATATAA
* *
168602146 A-AA-AAT-GAC
1 ATAATAATATAA
168602155 ATAATAATATATA
1 ATAATAATATA-A
168602168 ATAA-AATAATTATA
1 ATAATAAT-A-TA-A
168602182 ATATATAATATAA
1 ATA-ATAATATAA
*
168602195 A-AGTATATATGTAA
1 ATA--ATA-ATATAA
168602209 A-AATAATAT--
1 ATAATAATATAA
168602218 ATAATATATATAA
1 ATAATA-ATATAA
*
168602231 ATAATAATGT-A
1 ATAATAATATAA
168602242 A-AATAATAATAA
1 ATAATAAT-ATAA
* ** *
168602254 TTTGTGA-A-AA
1 ATAATAATATAA
168602264 ATAATATATAATAA
1 ATAATA-AT-ATAA
168602278 ATAATAATATAA
1 ATAATAATATAA
*
168602290 AT-ATTATATAA
1 ATAATAATATAA
*
168602301 TAAAATAATTATATA
1 -ATAATAA-TATA-A
168602316 ATATATAATATAA
1 ATA-ATAATATAA
168602329 A
1 A
168602330 ATAAGGTTAA
Statistics
Matches: 138, Mismatches: 20, Indels: 51
0.66 0.10 0.24
Matches are distributed among these distances:
9 3 0.02
10 19 0.14
11 25 0.18
12 20 0.14
13 27 0.20
14 34 0.25
15 7 0.05
16 3 0.02
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (12 bp):
ATAATAATATAA
Found at i:168602298 original size:26 final size:27
Alignment explanation
Indices: 168602262--168602328 Score: 91
Period size: 26 Copynumber: 2.5 Consensus size: 27
168602252 AATTTGTGAA
*
168602262 AAATAATATATAATA-AATAATAATAT
1 AAATATTATATAATAAAATAATAATAT
*
168602288 AAATATTATATAATAAAATAATTATAT
1 AAATATTATATAATAAAATAATAATAT
*
168602315 AATATATAATATAA
1 AA-ATATTATATAA
168602329 AATAAGGTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 14 0.39
27 12 0.33
28 10 0.28
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (27 bp):
AAATATTATATAATAAAATAATAATAT
Found at i:168602345 original size:95 final size:91
Alignment explanation
Indices: 168602170--168602345 Score: 216
Period size: 95 Copynumber: 1.9 Consensus size: 91
168602160 AATATATAAT
*
168602170 AAAATAATTATAATATATAATATAAAAGTATATATGTAAAAATAATATATAATATATATAAATAA
1 AAAATAATTATAATATATAATATAAAAGTATATATATAAAAATAATATATAATATATATAAATAA
*
168602235 TAATGTAAAATAATAATAATTTGTGA
66 TAAGGTAAAATAATAATAATTTGTGA
*
168602261 AAAATAATATATAATAAATAATAATATAAA-TAT-TATATAATAAAATAATTATATAATATATAA
1 AAAATAAT-TATAATATATAAT-ATA-AAAGTATATATAT-A-AAAATAA-TATATAATATAT-A
*
168602324 TATAA-AATAAGGTTAAA-AATAA
59 TA-AATAATAAGGTAAAATAATAA
168602346 AACAAATAAC
Statistics
Matches: 73, Mismatches: 4, Indels: 12
0.82 0.04 0.13
Matches are distributed among these distances:
91 8 0.11
92 16 0.22
93 7 0.10
94 10 0.14
95 17 0.23
96 13 0.18
97 2 0.03
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (91 bp):
AAAATAATTATAATATATAATATAAAAGTATATATATAAAAATAATATATAATATATATAAATAA
TAAGGTAAAATAATAATAATTTGTGA
Found at i:168605275 original size:9 final size:9
Alignment explanation
Indices: 168605261--168605285 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
168605251 CTCATAGTTG
168605261 AACTCTCTA
1 AACTCTCTA
168605270 AACTCTCTA
1 AACTCTCTA
168605279 AACTCTC
1 AACTCTC
168605286 CTTAGATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (9 bp):
AACTCTCTA
Found at i:168606955 original size:28 final size:27
Alignment explanation
Indices: 168606892--168606961 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
168606882 ATAGTGAGTC
168606892 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
168606919 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
168606947 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
168606962 GTACAATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:168620828 original size:40 final size:39
Alignment explanation
Indices: 168620663--168620846 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
168620653 AAATTGAATG
* * *
168620663 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
168620703 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
168620743 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
168620783 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
168620822 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
168620847 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:168620871 original size:80 final size:81
Alignment explanation
Indices: 168620703--168620891 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
168620693 GCTGGAAATT
* * * *
168620703 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
168620768 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
168620784 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
168620847 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
168620863 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
168620892 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:168626981 original size:2 final size:2
Alignment explanation
Indices: 168626909--168626965 Score: 66
Period size: 2 Copynumber: 30.0 Consensus size: 2
168626899 ACAAAAATAC
* *
168626909 AT AT AT AT GT AT AT AT AT AT AT -T AT AT GT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
168626949 AT AT AT -T AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT
168626966 GCCATTAGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
1 3 0.07
2 43 0.93
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (2 bp):
AT
Found at i:168630270 original size:16 final size:16
Alignment explanation
Indices: 168630225--168630280 Score: 64
Period size: 16 Copynumber: 3.6 Consensus size: 16
168630215 CAAGAAAATC
168630225 AATAAAG-AAATCCA-
1 AATAAAGAAAATCCAG
* *
168630239 AGATAGA-AAAACCCAG
1 A-ATAAAGAAAATCCAG
168630255 AATAAAGAAAATCCAG
1 AATAAAGAAAATCCAG
168630271 AATAAAGAAA
1 AATAAAGAAA
168630281 CCCAAGATAC
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
14 1 0.03
15 14 0.41
16 19 0.56
ACGTcount: A:0.64, C:0.12, G:0.12, T:0.11
Consensus pattern (16 bp):
AATAAAGAAAATCCAG
Found at i:168631786 original size:28 final size:27
Alignment explanation
Indices: 168631723--168631792 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
168631713 ATAGTGAGTC
*
168631723 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
168631750 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
168631778 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
168631793 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:168639695 original size:27 final size:28
Alignment explanation
Indices: 168639662--168639731 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
168639652 ATGGTGAGTC
* *
168639662 CGCACACCTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
168639689 CGTACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
168639717 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
168639732 GTACAAGTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 19 0.51
28 18 0.49
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:168641856 original size:2 final size:2
Alignment explanation
Indices: 168641849--168641889 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
168641839 TGTTATCACT
168641849 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
168641890 CATAAACTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:168648211 original size:43 final size:42
Alignment explanation
Indices: 168648137--168648219 Score: 103
Period size: 43 Copynumber: 2.0 Consensus size: 42
168648127 AAAGCTTGTA
* * * *
168648137 CAATGCCATATCCTAGATATGGTCTTACATGTTATCACATAT
1 CAATGCCATATCCCAGACATGGTATTACATGTAATCACATAT
* *
168648179 CAATGCCACTGTCCCAGACATGGTATTGCATGTAATCACAT
1 CAATGCCA-TATCCCAGACATGGTATTACATGTAATCACAT
168648220 CTTGTAACCT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 8 0.24
43 26 0.76
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.31
Consensus pattern (42 bp):
CAATGCCATATCCCAGACATGGTATTACATGTAATCACATAT
Found at i:168649818 original size:28 final size:29
Alignment explanation
Indices: 168649753--168649853 Score: 134
Period size: 28 Copynumber: 3.5 Consensus size: 29
168649743 ATAGTGAATC
168649753 CGCACACTTAGTGCTATATACATTC-AACT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
168649782 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
168649810 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
168649840 CGCACACTTAGTGC
1 CGCACACTTAGTGC
168649854 CAATCTTGTC
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.37
29 20 0.31
30 19 0.29
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:168659907 original size:27 final size:28
Alignment explanation
Indices: 168659877--168659946 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
168659867 ATAATAAGTC
*
168659877 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
168659904 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
168659932 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
168659947 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:168667817 original size:27 final size:28
Alignment explanation
Indices: 168667787--168667856 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
168667777 ATAATAAGTC
*
168667787 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
168667814 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
168667842 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
168667857 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:168670657 original size:40 final size:40
Alignment explanation
Indices: 168670612--168670701 Score: 110
Period size: 40 Copynumber: 2.2 Consensus size: 40
168670602 CGGAATACAA
* *
168670612 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAAC
* * * *
168670652 CCGGATGTAGCCGCTAGCACAAATGCCTTTGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAAC
168670692 CCGGATATAA
1 CCGGATATAA
168670702 TTTCCAGCAT
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
39 1 0.02
40 40 0.98
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:168675154 original size:18 final size:18
Alignment explanation
Indices: 168675131--168675169 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
168675121 TTAAATAACT
168675131 TAAAATGAACTTTAAAAA
1 TAAAATGAACTTTAAAAA
* *
168675149 TAAAATTAAGTTTAAAAA
1 TAAAATGAACTTTAAAAA
168675167 TAA
1 TAA
168675170 CTAAGGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.31
Consensus pattern (18 bp):
TAAAATGAACTTTAAAAA
Found at i:168680172 original size:46 final size:43
Alignment explanation
Indices: 168679988--168680255 Score: 133
Period size: 46 Copynumber: 5.8 Consensus size: 43
168679978 GAGTTATTCG
* * * *
168679988 TGTGCTAGTGTAAGACATGTCTGAGACATGCATCGGCCAC-ATTA
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATC-ACCACGA-GA
* * * ** *
168680032 TGAGAGACAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGA
1 T--GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCACCA-CGAGA
* * * *
168680080 CGAGCGCAAGTGTAAGGCATGTCTGGGACATGCATCCACCCCGAGA
1 TGTGC-C-AGTGTAAGACATGTCTGGGACATGCAT-CACCACGAGA
* * *
168680126 TGTAAGCCAGTGTAAGACATGTCTGGGGCATGCATCAGCTATGAGA
1 TGT--GCCAGTGTAAGACATGTCTGGGACATGCATCA-CCACGAGA
* * * *
168680172 TGTGTCAATGTAAGACCATGCCTGGGACATGGCATCAACACGAATAGA
1 TGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCACCACG---AGA
* * *
168680220 GGTGACAGTGTAAGACCATGTTTGGGACATGGCATC
1 TGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
168680256 GACATGGATA
Statistics
Matches: 172, Mismatches: 35, Indels: 30
0.73 0.15 0.13
Matches are distributed among these distances:
44 11 0.06
45 16 0.09
46 62 0.36
47 32 0.19
48 50 0.29
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (43 bp):
TGTGCCAGTGTAAGACATGTCTGGGACATGCATCACCACGAGA
Found at i:168686614 original size:68 final size:65
Alignment explanation
Indices: 168686504--168686756 Score: 214
Period size: 68 Copynumber: 3.8 Consensus size: 65
168686494 ATACAGATGG
** * * *
168686504 TATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACGAGAC
1 TATGTAGCTAGGTCACATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACGAGA-
168686567 ATTA
63 A-TA
* * *
168686571 TGATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGTTACG-GGAT
1 T-ATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGAAT
168686635 A
65 A
* * * * * *
168686636 TATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGA-A
1 TATGTAGCTAGGTCACATGGGTGG-TACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
168686700 ATA
63 ATA
* * *
168686703 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TA-TGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
168686757 CGAACTATAT
Statistics
Matches: 151, Mismatches: 26, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
62 1 0.01
63 19 0.13
64 21 0.14
65 9 0.06
66 19 0.13
67 32 0.21
68 49 0.32
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (65 bp):
TATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGAATA
Found at i:168689513 original size:93 final size:93
Alignment explanation
Indices: 168689401--168689572 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
168689391 GCCCATAAGT
* *
168689401 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
168689466 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
168689494 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
168689559 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
168689573 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:168689568 original size:46 final size:46
Alignment explanation
Indices: 168689393--168689568 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
168689383 TGTAACCCGC
* * *
168689393 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
168689439 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
168689489 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
168689532 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
168689569 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:168695422 original size:49 final size:48
Alignment explanation
Indices: 168695365--168695552 Score: 205
Period size: 49 Copynumber: 3.8 Consensus size: 48
168695355 TAGCCAAAGC
* *
168695365 TATCTGGTACGCATAGTAGCCCGCACTTAGTACTACACATGCGACCAAT
1 TATC-GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
** * * * *
168695414 TATCTGGTACATGTAGTAGCCTGCACTTAATACTACACACGTGATCGAAGT
1 TATC-GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
* **
168695465 TGTCGAGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCG-GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* *
168695514 TATACGGTACACGTAGTAGCCTACACTTAGTACTACACA
1 TAT-CGGTACACATAGTAGCCTGCACTTAGTACTACACA
168695553 CGTGACCTCA
Statistics
Matches: 113, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
49 69 0.61
50 9 0.08
51 35 0.31
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.27
Consensus pattern (48 bp):
TATCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:168695505 original size:100 final size:100
Alignment explanation
Indices: 168695375--168695557 Score: 314
Period size: 100 Copynumber: 1.8 Consensus size: 100
168695365 TATCTGGTAC
* *
168695375 GCATAGTAGCCCGCACTTAGTACTACACATGCGACCAATTAT-CTGGTACATGTAGTAGCCTGCA
1 GCATAGTAGCCCGCACTTAGTACTACACATGCGACCAATTATAC-GGTACACGTAGTAGCCTACA
168695439 CTTAATACTACACACGTGATCGAAGTTGTCGAGTAT
65 CTTAATACTACACACGTGATCGAAGTTGTCGAGTAT
*
168695475 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATACGGTACACGTAGTAGCCTACAC
1 GCATAGTAGCCCGCACTTAGTACTACACATGCGACCAATTATACGGTACACGTAGTAGCCTACAC
*
168695540 TTAGTACTACACACGTGA
66 TTAATACTACACACGTGA
168695558 CCTCATAATA
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
100 77 0.99
101 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (100 bp):
GCATAGTAGCCCGCACTTAGTACTACACATGCGACCAATTATACGGTACACGTAGTAGCCTACAC
TTAATACTACACACGTGATCGAAGTTGTCGAGTAT
Found at i:168696896 original size:46 final size:46
Alignment explanation
Indices: 168696765--168696918 Score: 143
Period size: 46 Copynumber: 3.3 Consensus size: 46
168696755 GGATGTTACA
* * *
168696765 GTCTGGGACATGCATCGGCCAC-ATTATGAGAGCCAGTGTAAGACCAT
1 GTCTGGGACATGCATCGGCCTCGA-GATGA-AGCCAGTGTAAGACAAT
* * * * *
168696812 GTCTGGGACATGGAATCGACATTGAGATGGGAGCCAGTGTAAGA-AAT
1 GTCTGGGACAT-GCATCGGCCTCGAGAT-GAAGCCAGTGTAAGACAAT
* *
168696859 GTTTGGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGAC-GT
1 GTCTGGGACATGCATCGGCCTCGAGATG-AAGCCAGTGTAAGACAAT
*
168696905 GTCTAGGACATGCA
1 GTCTGGGACATGCA
168696919 CCGTCTATGA
Statistics
Matches: 85, Mismatches: 17, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
45 1 0.01
46 38 0.45
47 23 0.27
48 21 0.25
49 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (46 bp):
GTCTGGGACATGCATCGGCCTCGAGATGAAGCCAGTGTAAGACAAT
Found at i:168700116 original size:37 final size:39
Alignment explanation
Indices: 168699995--168700142 Score: 203
Period size: 39 Copynumber: 3.8 Consensus size: 39
168699985 ATTGGTAACC
* *
168699995 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
168700035 CGCACAATTGCCTT-GAGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCG-GGCTTAGCCCGGATATCACAACT
*
168700074 CGCACAATTGCCTTC-GGCTTAG-CCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
168700111 TGCACAATTGCCTTCGGGCTTAGCCCGGATAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
168700143 GACTCGAACA
Statistics
Matches: 96, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
37 26 0.27
38 14 0.15
39 41 0.43
40 15 0.16
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:168700116 original size:76 final size:79
Alignment explanation
Indices: 168699995--168700142 Score: 223
Period size: 76 Copynumber: 1.9 Consensus size: 79
168699985 ATTGGTAACC
168699995 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTT-GAGGCTTAGC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCG-GGCTTAGC
168700059 CCGGATATCATAGCT
65 CCGGATATCATAGCT
* * * *
168700074 CGCACAATTGCCTTC-GG-CTT-AGCCGGATATCACAATTTGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
168700136 CGGATAT
66 CGGATAT
168700143 GACTCGAACA
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
76 44 0.69
77 4 0.06
78 2 0.03
79 14 0.22
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (79 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
CGGATATCATAGCT
Found at i:168701873 original size:29 final size:29
Alignment explanation
Indices: 168701840--168701913 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
168701830 CCTTCGAGCT
168701840 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
168701869 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
168701898 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
168701914 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:168709682 original size:29 final size:29
Alignment explanation
Indices: 168709648--168709779 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
168709638 TACTCGATTT
** * *
168709648 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
168709677 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
168709706 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
168709735 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
168709764 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
168709780 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:168715443 original size:40 final size:40
Alignment explanation
Indices: 168715398--168715565 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
168715388 CGGAATATAA
168715398 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
168715438 CCGGATAGAAT-ATCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCA-CTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
168715478 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
168715518 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
168715558 CCGGATAT
1 CCGGATAT
168715566 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.02
40 101 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:168715548 original size:80 final size:80
Alignment explanation
Indices: 168715414--168715563 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
168715404 ATAATCACGT
*
168715414 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATATCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGAT-TTAGC
168715478 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
168715494 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTC-GCACGAA-TGCCTTCGGGATTTAG
168715557 CCCGGAT
64 CCCGGAT
168715564 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:168717449 original size:40 final size:40
Alignment explanation
Indices: 168717366--168717581 Score: 291
Period size: 40 Copynumber: 5.5 Consensus size: 40
168717356 CAACCAAGTA
** *
168717366 CCTTCGGGGTTTAG-CCGGATATAGCT-ACT-GCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
168717404 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
168717444 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
168717484 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
168717524 CCTTCGGGACTT-GCCCGGA-ACTAGTCACTAG-AGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA-CAAATG
168717563 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
168717582 TTATCATCCA
Statistics
Matches: 161, Mismatches: 11, Indels: 10
0.88 0.06 0.05
Matches are distributed among these distances:
38 15 0.09
39 45 0.28
40 101 0.63
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:168718292 original size:2 final size:2
Alignment explanation
Indices: 168718285--168718312 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
168718275 ATGTGCAAAC
168718285 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
168718313 GTGCAAGAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:168725127 original size:21 final size:21
Alignment explanation
Indices: 168725103--168725147 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
168725093 AAATGAAAAG
168725103 TTATTCATAGATAAACAACTT
1 TTATTCATAGATAAACAACTT
168725124 TTATTCATAGATAAACAACTT
1 TTATTCATAGATAAACAACTT
168725145 TTA
1 TTA
168725148 CAAAGTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.42, C:0.13, G:0.04, T:0.40
Consensus pattern (21 bp):
TTATTCATAGATAAACAACTT
Found at i:168727851 original size:22 final size:23
Alignment explanation
Indices: 168727821--168727866 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
168727811 AGATGTAGTG
*
168727821 AATAGAAAACAAAAGTTA-GCTT
1 AATAGAAAACAAAAATTATGCTT
* *
168727843 AATATAAAATAAAAATTATGCTT
1 AATAGAAAACAAAAATTATGCTT
168727866 A
1 A
168727867 GTTTTTTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.57, C:0.07, G:0.09, T:0.28
Consensus pattern (23 bp):
AATAGAAAACAAAAATTATGCTT
Found at i:168728793 original size:13 final size:13
Alignment explanation
Indices: 168728775--168728800 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
168728765 GGACACGACC
168728775 GTATGTAAAGAAT
1 GTATGTAAAGAAT
168728788 GTATGTAAAGAAT
1 GTATGTAAAGAAT
168728801 TTGTTTATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31
Consensus pattern (13 bp):
GTATGTAAAGAAT
Found at i:168731930 original size:40 final size:40
Alignment explanation
Indices: 168731865--168732112 Score: 374
Period size: 40 Copynumber: 6.2 Consensus size: 40
168731855 TCTTCGGAAT
* ** *
168731865 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
168731904 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
168731944 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
168731984 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
168732024 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
168732064 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
168732104 TTAGCCCGG
1 TTAGCCCGG
168732113 GTATCATTCA
Statistics
Matches: 192, Mismatches: 15, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
39 3 0.02
40 188 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:168740168 original size:40 final size:40
Alignment explanation
Indices: 168740103--168740346 Score: 329
Period size: 40 Copynumber: 6.2 Consensus size: 40
168740093 TCTTCGGAAT
* ** *
168740103 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
168740142 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
168740182 TTAGCCCGGATACAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
168740222 TTAGCCCGGATAT-ACAACT--CACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
168740259 TTAGCCC-GATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
168740298 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
168740338 TTAGCCCGG
1 TTAGCCCGG
168740347 GTATCATTCA
Statistics
Matches: 182, Mismatches: 17, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
36 5 0.03
37 30 0.16
39 33 0.18
40 113 0.62
41 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:168740292 original size:76 final size:78
Alignment explanation
Indices: 168740103--168740345 Score: 312
Period size: 76 Copynumber: 3.1 Consensus size: 78
168740093 TCTTCGGAAT
* * ** * * *
168740103 TTAGCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACA
1 TTAGCCCGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC-CACA
168740168 AATGCCTTCGGGTC
65 AATGCCTTCGGGTC
* *
168740182 TTAGCCCGGATACAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATA-CAACT-CACG
1 TTAGCCC-GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCCACA
168740245 AATGCCTTCGGGTC
65 AATGCCTTCGGGTC
* * *
168740259 TTAGCCCGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCAT
1 TTAGCCCGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT-AGCAACT-CCAC
*
168740323 AAATGCCTTCGGGAC
64 AAATGCCTTCGGGTC
168740338 TTAGCCCG
1 TTAGCCCG
168740346 GGTATCATTC
Statistics
Matches: 146, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
76 44 0.30
77 28 0.19
78 1 0.01
79 34 0.23
80 39 0.27
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.23
Consensus pattern (78 bp):
TTAGCCCGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCCACAA
ATGCCTTCGGGTC
Found at i:168740301 original size:116 final size:117
Alignment explanation
Indices: 168740130--168740346 Score: 348
Period size: 116 Copynumber: 1.9 Consensus size: 117
168740120 CAAGCACAAT
* *
168740130 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAC
1 TGCCTTCGGGTCTTAACCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAC
* *
168740195 AA-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATACAACTCACGAA
66 AATC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATACAACTCACGAA
* *
168740247 TGCCTTCGGGTCTTAGCCC-GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAACCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAC
*
168740311 AATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
66 AATCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
168740347 GTATCATTCA
Statistics
Matches: 92, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
116 73 0.79
117 19 0.21
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.24
Consensus pattern (117 bp):
TGCCTTCGGGTCTTAACCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAC
AATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATACAACTCACGAA
Found at i:168748120 original size:18 final size:19
Alignment explanation
Indices: 168748083--168748121 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
168748073 AAATCATATT
168748083 TATTATTTTCATATAAAAA
1 TATTATTTTCATATAAAAA
*
168748102 TATTATTTTGATA-AAAAA
1 TATTATTTTCATATAAAAA
168748120 TA
1 TA
168748122 AAAAAGATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (19 bp):
TATTATTTTCATATAAAAA
Found at i:168748705 original size:24 final size:24
Alignment explanation
Indices: 168748677--168748725 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
168748667 CCAAAATAAC
168748677 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
168748701 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
168748725 A
1 A
168748726 CAAATATACG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (24 bp):
AATTAATTTTTATATAAACTTTTA
Found at i:168748723 original size:12 final size:12
Alignment explanation
Indices: 168748684--168748724 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
168748674 AACAATTAAT
168748684 TTTTATATAAAC
1 TTTTATATAAAC
* * *
168748696 TTTTAAATTAAT
1 TTTTATATAAAC
168748708 TTTTATATAAAC
1 TTTTATATAAAC
168748720 TTTTA
1 TTTTA
168748725 ACAAATATAC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (12 bp):
TTTTATATAAAC
Found at i:168749864 original size:205 final size:206
Alignment explanation
Indices: 168749290--168750168 Score: 1275
Period size: 206 Copynumber: 4.3 Consensus size: 206
168749280 TTCCTGTAGT
* * * * *
168749290 GTAAGCTCGTGAAAACCAAATCAACTATGTCTTCGATTTGATCCTTGTAAGCACAAGGATACCAA
1 GTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAA
* * * * *
168749355 ACCATCTTAGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGT
66 ATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGT
*
168749420 CGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGA
131 CGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCAAAATCATCTTAGA
168749485 TTTGCTTCATC
196 TTTGCTTCATC
* * * * * *
168749496 ATAAGCACGTAAAAGCCAAATCAGCTATATTTTCGATTTGTTCCTTGTAAGCAAAAGAATGCCAA
1 GTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAA
*
168749561 ATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCAT-CTCTTCG
66 ATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTC-TGCTCTCCG
* *
168749625 TCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGAAAATACAAAGATGCAAAATCATCTTAG
130 TCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCAAAATCATCTTAG
168749690 ATTTGCTTCATC
195 ATTTGCTTCATC
*
168749702 GTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCC-TGTAAGCACAAGAATGCCAA
1 GTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAA
*
168749766 ATCATCTTGGATCTGCTTCAGTATAAACATTTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGT
66 ATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGT
* * *
168749831 CAAATATGGAGACGCCAAACTTCAATTTGTTCTCTGACAATATAGAGATG-ACAAATCATCTTAG
131 CGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCA-AAATCATCTTAG
*
168749895 ATTTGCTTCATT
195 ATTTGCTTCATC
*
168749907 GTAAGCACGT----G---AA--AGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAA
1 GTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAA
* * ** *
168749963 ATCACCTTGGATCTGCTTCA-TATAAACATATGAAGGCCA-ATTTGCTATGTGTCTGCTCTCCGT
66 ATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGT
* * *
168750026 CGAATATGGAGACGCCAAACTTTGATTTGTTCTCTGACAATATAGAGATGCCAAATCATCTTAGA
131 CGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCAAAATCATCTTAGA
* *
168750091 TTTGCTTTAGC
196 TTTGCTTCATC
* * *
168750102 GTAAAC-CGTGAAAGCCAAATTAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAA
1 GTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAA
168750166 ATC
66 ATC
168750169 TGCTATCTTC
Statistics
Matches: 609, Mismatches: 50, Indels: 31
0.88 0.07 0.04
Matches are distributed among these distances:
194 3 0.00
195 96 0.16
196 37 0.06
197 38 0.06
198 3 0.00
201 3 0.00
203 44 0.07
204 2 0.00
205 158 0.26
206 224 0.37
207 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (206 bp):
GTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAA
ATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGT
CGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCAAAATCATCTTAGA
TTTGCTTCATC
Found at i:168750186 original size:44 final size:44
Alignment explanation
Indices: 168750130--168750433 Score: 244
Period size: 44 Copynumber: 6.9 Consensus size: 44
168750120 ATTAGCTATG
* * * *
168750130 TCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAATCTGCTA
1 TCTTCGATTTGTTCCCTATAAACACAAGGATGCCAAATCTGCTA
* * * * **
168750174 TCTTCAACTTGTTCCCTATAAACACAGGGGTGCC--ATGCTGAAA
1 TCTTCGATTTGTTCCCTATAAACACAAGGATGCCAAAT-CTGCTA
* * * * * *
168750217 TCTTCGATCTGCTTCGCTGTAAGCAC-AGGAATGTCAGATCTGCTA
1 TCTTCGATTTG-TTCCCTATAAACACAAGG-ATGCCAAATCTGCTA
*
168750262 TCTTTGATTTGTTCCCTATAAACAC-AGAGATGCCAAATCTGCTA
1 TCTTCGATTTGTTCCCTATAAACACAAG-GATGCCAAATCTGCTA
* * * * **
168750306 TCTTCAACTTGTTCCCTATAAACATAGGGATGCC--ATGCTGAAA
1 TCTTCGATTTGTTCCCTATAAACACAAGGATGCCAAAT-CTGCTA
* * * * *
168750349 TCTTCGATCTGCTTCGCTATAAGCACAA-GAGTGTCAGATCTGCTA
1 TCTTCGATTTG-TTCCCTATAAACACAAGGA-TGCCAAATCTGCTA
168750394 TCTTCGATTTGTTCCCTATAAACACAAGGATGCCAAATCT
1 TCTTCGATTTGTTCCCTATAAACACAAGGATGCCAAATCT
168750434 TATTTCTTTG
Statistics
Matches: 199, Mismatches: 48, Indels: 26
0.73 0.18 0.10
Matches are distributed among these distances:
42 4 0.02
43 28 0.14
44 132 0.66
45 31 0.16
46 4 0.02
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (44 bp):
TCTTCGATTTGTTCCCTATAAACACAAGGATGCCAAATCTGCTA
Found at i:168750299 original size:132 final size:132
Alignment explanation
Indices: 168750130--168750433 Score: 502
Period size: 132 Copynumber: 2.3 Consensus size: 132
168750120 ATTAGCTATG
* * * *
168750130 TCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
1 TCTTCGATTTGTTCCCTATAAACACAAGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
* * *
168750195 ACACAGGGGTGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGC
66 ACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTATAAGCACAAGAATGTCAGATCTGC
168750260 TA
131 TA
*
168750262 TCTTTGATTTGTTCCCTATAAACAC-AGAGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATA
1 TCTTCGATTTGTTCCCTATAAACACAAG-GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATA
* *
168750326 AACATAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTATAAGCACAAGAGTGTCAGATCTG
65 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTATAAGCACAAGAATGTCAGATCTG
168750391 CTA
130 CTA
168750394 TCTTCGATTTGTTCCCTATAAACACAAGGATGCCAAATCT
1 TCTTCGATTTGTTCCCTATAAACACAAGGATGCCAAATCT
168750434 TATTTCTTTG
Statistics
Matches: 159, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
131 2 0.01
132 155 0.97
133 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (132 bp):
TCTTCGATTTGTTCCCTATAAACACAAGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
ACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTATAAGCACAAGAATGTCAGATCTGC
TA
Found at i:168751307 original size:10 final size:10
Alignment explanation
Indices: 168751292--168751316 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
168751282 CCATTTTTTC
168751292 TTTTTTCTTT
1 TTTTTTCTTT
168751302 TTTTTTCTTT
1 TTTTTTCTTT
168751312 TTTTT
1 TTTTT
168751317 GAAATAGAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:168756949 original size:22 final size:21
Alignment explanation
Indices: 168756919--168756965 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
168756909 TACAAATTAA
168756919 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
168756941 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
168756962 ATCT
1 ATCT
168756966 AAGATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:168756971 original size:19 final size:19
Alignment explanation
Indices: 168756936--168756997 Score: 97
Period size: 19 Copynumber: 3.2 Consensus size: 19
168756926 AGATTACAAG
168756936 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
168756957 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
168756976 ATCACATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
168756995 ATC
1 ATC
168756998 CTTAAAGATT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
19 31 0.77
20 1 0.03
21 8 0.20
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:168759354 original size:2 final size:2
Alignment explanation
Indices: 168759349--168759385 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
168759339 ACAACTGTTC
168759349 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
168759386 GCTTTTATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:168763366 original size:34 final size:33
Alignment explanation
Indices: 168763282--168763367 Score: 84
Period size: 33 Copynumber: 2.6 Consensus size: 33
168763272 TGCATACTGC
* * *
168763282 ACTGATTCTATAATGGGCTTAGGCCCCACTAAT
1 ACTGATTCTAAAATGGGCTCAGACCCCACTAAT
* **
168763315 ACTG-TTACTAGAATGGGCTCAGACCCACACTGTT
1 ACTGATT-CTAAAATGGGCTCAGACCC-CACTAAT
*
168763349 TCTGATTCTAAAATGGGCT
1 ACTGATTCTAAAATGGGCT
168763368 AAGGCCCTAA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
32 2 0.05
33 20 0.47
34 19 0.44
35 2 0.05
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (33 bp):
ACTGATTCTAAAATGGGCTCAGACCCCACTAAT
Found at i:168764302 original size:12 final size:12
Alignment explanation
Indices: 168764285--168764311 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
168764275 ATTAACACTG
168764285 GAACAATAAATT
1 GAACAATAAATT
168764297 GAACAATAAATT
1 GAACAATAAATT
168764309 GAA
1 GAA
168764312 TGGCATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.07, G:0.11, T:0.22
Consensus pattern (12 bp):
GAACAATAAATT
Found at i:168769782 original size:9 final size:9
Alignment explanation
Indices: 168769766--168769814 Score: 59
Period size: 9 Copynumber: 5.8 Consensus size: 9
168769756 AAAAAGGTCT
168769766 AAAA-AATA
1 AAAATAATA
*
168769774 CAAATAATA
1 AAAATAATA
168769783 AAAATAATA
1 AAAATAATA
168769792 AAAATAA-A
1 AAAATAATA
*
168769800 ACAA-AATA
1 AAAATAATA
168769808 AAAATAA
1 AAAATAA
168769815 ATGGACTCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
7 2 0.06
8 11 0.32
9 21 0.62
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (9 bp):
AAAATAATA
Found at i:168769786 original size:16 final size:16
Alignment explanation
Indices: 168769765--168769814 Score: 57
Period size: 16 Copynumber: 3.0 Consensus size: 16
168769755 GAAAAAGGTC
*
168769765 TAAAAAATACAAATAA
1 TAAAAAATAAAAATAA
168769781 TAAAAATAATAAAAATAA
1 T-AAAA-AATAAAAATAA
168769799 -AACAAAATAAAAATAA
1 TAA-AAAATAAAAATAA
168769815 ATGGACTCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
16 14 0.47
17 6 0.20
18 10 0.33
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.18
Consensus pattern (16 bp):
TAAAAAATAAAAATAA
Found at i:168778339 original size:33 final size:33
Alignment explanation
Indices: 168778179--168778340 Score: 182
Period size: 33 Copynumber: 4.9 Consensus size: 33
168778169 TCAACATAAG
* * *
168778179 TGATTGGAACATCTATAAAGGCAACTTCATCAA
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAA
* *
168778212 TGATTGGAACATCTATCAGGGTAGCTCCAT-AA
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAA
*
168778244 TTGATTGGAACATCTATCAGGGCAGCTCCATCAA
1 -TGATTGGAACATCTATCAGGGCAGCTTCATCAA
* * ** *
168778278 TGGTTGGAACATTTATCAACGCAGCTTCATCAT
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAA
* * *
168778311 TGATTGGAGCATCTATCGGGGCATCTTCAT
1 TGATTGGAACATCTATCAGGGCAGCTTCAT
168778341 AATTCTGTTT
Statistics
Matches: 108, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
32 2 0.02
33 104 0.96
34 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (33 bp):
TGATTGGAACATCTATCAGGGCAGCTTCATCAA
Found at i:168779885 original size:40 final size:40
Alignment explanation
Indices: 168779840--168780006 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
168779830 CGGAATATAA
*
168779840 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
168779880 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
168779920 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
168779960 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
168779999 CCGGATAT
1 CCGGATAT
168780007 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:168782295 original size:40 final size:39
Alignment explanation
Indices: 168782184--168782297 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 39
168782174 TTAATCACGT
* * *
168782184 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
168782224 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
*
168782264 GCACAATTGCCTTCGGGTCTTAACCCGGATATAA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAA
168782298 TTTCCAGCAT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.03
40 61 0.97
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:168790067 original size:25 final size:25
Alignment explanation
Indices: 168790038--168790085 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
168790028 TTATAATATG
* * *
168790038 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
168790063 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
168790086 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:168790154 original size:20 final size:20
Alignment explanation
Indices: 168790129--168790187 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
168790119 TAAATATGGT
168790129 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
168790149 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
168790169 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
168790188 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:168790268 original size:23 final size:24
Alignment explanation
Indices: 168790238--168790332 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
168790228 GAGGAAGTGA
168790238 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
168790261 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
168790285 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
168790309 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
168790333 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:168790306 original size:47 final size:49
Alignment explanation
Indices: 168790239--168790332 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
168790229 AGGAAGTGAA
*
168790239 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
168790286 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
168790333 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:168790595 original size:68 final size:69
Alignment explanation
Indices: 168790523--168790661 Score: 262
Period size: 68 Copynumber: 2.0 Consensus size: 69
168790513 CGTTTACAGT
168790523 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGG-CCAGTAATATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
168790587 ATGA
66 ATGA
*
168790591 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
168790656 ATGA
66 ATGA
168790660 AA
1 AA
168790662 TACGAAAAGG
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
68 49 0.71
69 20 0.29
ACGTcount: A:0.40, C:0.15, G:0.22, T:0.24
Consensus pattern (69 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
ATGA
Found at i:168790614 original size:31 final size:31
Alignment explanation
Indices: 168790549--168790661 Score: 138
Period size: 38 Copynumber: 3.5 Consensus size: 31
168790539 TATTATGAAA
* *
168790549 TATGAAACATGAAAAGGCTTCGG-CCAGTAA
1 TATGAAATATGAAAAGGCTTCGGCCCAGTAT
168790579 TATGAAATATGAAAAGGCTTCGGCCCAGTAT
1 TATGAAATATGAAAAGGCTTCGGCCCAGTAT
168790610 TATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAT
1 TATG-AA-AT-----ATGAAAAGGCTTCGGCCCAGTAT
168790648 TATGAAATATGAAA
1 TATGAAATATGAAA
168790662 TACGAAAAGG
Statistics
Matches: 73, Mismatches: 2, Indels: 15
0.81 0.02 0.17
Matches are distributed among these distances:
30 22 0.30
31 16 0.22
32 2 0.03
33 2 0.03
36 2 0.03
37 2 0.03
38 27 0.37
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (31 bp):
TATGAAATATGAAAAGGCTTCGGCCCAGTAT
Found at i:168790629 original size:38 final size:38
Alignment explanation
Indices: 168790577--168790684 Score: 180
Period size: 38 Copynumber: 2.8 Consensus size: 38
168790567 TTCGGCCAGT
168790577 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
168790615 AATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
* *
168790653 AATATGAAATACGAAAAGGGCTACGGCCCAGT
1 AATATGAAATATGAAAA-GGCTTCGGCCCAGT
168790685 GCATGATTGA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 52 0.80
39 13 0.20
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
Found at i:168798418 original size:25 final size:25
Alignment explanation
Indices: 168798389--168798436 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
168798379 TTATAATATG
* * *
168798389 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
168798414 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
168798437 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:168798505 original size:20 final size:20
Alignment explanation
Indices: 168798480--168798538 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
168798470 TAAATATGGT
168798480 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* * *
168798500 ATGTATGATACGCGCATGAT
1 ATGTATGATATGCACATGAA
168798520 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
168798539 GGTAATCATA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:168798618 original size:23 final size:24
Alignment explanation
Indices: 168798589--168798683 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
168798579 GAGGAAGTAA
168798589 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
168798612 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
168798636 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
168798660 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
168798684 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:168798926 original size:38 final size:38
Alignment explanation
Indices: 168798875--168799037 Score: 232
Period size: 38 Copynumber: 4.4 Consensus size: 38
168798865 CGTTTACAGT
168798875 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
168798913 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
168798944 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
* *
168798982 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATACGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
168799020 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
168799038 GCATGATTGA
Statistics
Matches: 112, Mismatches: 5, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
31 29 0.26
33 1 0.01
36 1 0.01
38 68 0.61
39 13 0.12
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:168798937 original size:31 final size:31
Alignment explanation
Indices: 168798899--168799014 Score: 142
Period size: 31 Copynumber: 3.5 Consensus size: 31
168798889 AGTATTATGA
168798899 AATATGAAACATGAAAAGGCTTCGGCCCAGT
1 AATATGAAACATGAAAAGGCTTCGGCCCAGT
*
168798930 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 AATATGAAACATGAAAAGGCTTCGGCCCAG-----T
168798966 GAAATATGAAACATGAAAAGGCTTCGGCCCAGT
1 --AATATGAAACATGAAAAGGCTTCGGCCCAGT
* *
168798999 ATTATGAAATATGAAA
1 AATATGAAACATGAAA
168799015 TACGAAAAGG
Statistics
Matches: 74, Mismatches: 4, Indels: 14
0.80 0.04 0.15
Matches are distributed among these distances:
31 43 0.58
33 1 0.01
36 1 0.01
38 29 0.39
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (31 bp):
AATATGAAACATGAAAAGGCTTCGGCCCAGT
Found at i:168798951 original size:69 final size:69
Alignment explanation
Indices: 168798875--168799014 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
168798865 CGTTTACAGT
168798875 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
168798940 ATGA
66 ATGA
*
168798944 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
168799009 ATGA
66 ATGA
168799013 AA
1 AA
168799015 TACGAAAAGG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (69 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
ATGA
Found at i:168800850 original size:45 final size:45
Alignment explanation
Indices: 168800794--168800881 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
168800784 TAATATCATT
* *
168800794 TCACTGGCATTATAGCCTGCTAGGCTCGAAGGCCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCTGAATAGTATC
168800839 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCTGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCTGAATAGTA
168800882 CTGTACGATA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCTGAATAGTATC
Found at i:168806017 original size:43 final size:43
Alignment explanation
Indices: 168805946--168806131 Score: 223
Period size: 43 Copynumber: 4.3 Consensus size: 43
168805936 AAAAAATGCT
* *
168805946 GCTAAAGACCATGACTTTTAGCGGCGCTTTTCCCGA-AAACGCC
1 GCTAAAAATCATGACTTTTAGCGGCGCTTTTCCC-ACAAACGCC
* * *
168805989 GCTAAAAATCATGACATTTAACGACGCTTTTCCCACAAACGCC
1 GCTAAAAATCATGACTTTTAGCGGCGCTTTTCCCACAAACGCC
* * * *
168806032 GCTAAAAATCATGACCTTTAGCGGCACTTTTCCCATAGACGCC
1 GCTAAAAATCATGACTTTTAGCGGCGCTTTTCCCACAAACGCC
* * * *
168806075 ACTAAAGAA-CATGACTTTTAGCGGCCCTTTTCTCTCAAACGCC
1 GCTAAA-AATCATGACTTTTAGCGGCGCTTTTCCCACAAACGCC
168806118 GCTAAAAATCATGA
1 GCTAAAAATCATGA
168806132 ACTTCAAAAA
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
42 3 0.02
43 116 0.96
44 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.25
Consensus pattern (43 bp):
GCTAAAAATCATGACTTTTAGCGGCGCTTTTCCCACAAACGCC
Found at i:168807916 original size:21 final size:22
Alignment explanation
Indices: 168807879--168807936 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
168807869 AATCACAACT
168807879 TTTAGACACCATAAA-TTGCAGCA
1 TTTA-ACACC-TAAATTTGCAGCA
*
168807902 TTTAACACCTAAATTTTCAGCA
1 TTTAACACCTAAATTTGCAGCA
*
168807924 TTTAACACATAAA
1 TTTAACACCTAAA
168807937 ATGGTTTTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
21 4 0.12
22 24 0.75
23 4 0.12
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (22 bp):
TTTAACACCTAAATTTGCAGCA
Found at i:168810118 original size:6 final size:6
Alignment explanation
Indices: 168810109--168810139 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
168810099 TTTCAAAACC
*
168810109 AAAGGG AAAGGG AAAGGG AAAGGG GAAGGG A
1 AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG A
168810140 TCGTATGGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (6 bp):
AAAGGG
Found at i:168810367 original size:40 final size:41
Alignment explanation
Indices: 168810287--168810368 Score: 105
Period size: 40 Copynumber: 2.0 Consensus size: 41
168810277 AAAATGATTG
* *
168810287 TTTGTGGCATTTTTTTAAAAAAACGCCACTATTGCTTATTT
1 TTTGTGGCAGTTTTTTAAAAAAACGCCACTAATGCTTATTT
* *
168810328 TTTGTGGC-GTTTTTTATATAAACGCCACTAAT-CTCTATTT
1 TTTGTGGCAGTTTTTTAAAAAAACGCCACTAATGCT-TATTT
168810368 T
1 T
168810369 ATACATTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.06
40 26 0.72
41 8 0.22
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.48
Consensus pattern (41 bp):
TTTGTGGCAGTTTTTTAAAAAAACGCCACTAATGCTTATTT
Found at i:168810402 original size:23 final size:23
Alignment explanation
Indices: 168810376--168810426 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 23
168810366 TTTATACATT
168810376 TTTATTT-TTAT--ATTTTATT-
1 TTTATTTATTATCAATTTTATTA
*
168810395 TTTATTTATTATCAATTTTTTTA
1 TTTATTTATTATCAATTTTATTA
168810418 TTTATTTAT
1 TTTATTTAT
168810427 CAATGTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 7 0.26
20 4 0.15
22 7 0.26
23 9 0.33
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTATTTATTATCAATTTTATTA
Found at i:168810406 original size:7 final size:6
Alignment explanation
Indices: 168810373--168810406 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
168810363 TATTTTATAC
168810373 ATTTTT ATTTTT ATATTTT ATTTTT ATTTATT AT
1 ATTTTT ATTTTT AT-TTTT ATTTTT ATTT-TT AT
168810407 CAATTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 16 0.62
7 10 0.38
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (6 bp):
ATTTTT
Found at i:168810406 original size:13 final size:12
Alignment explanation
Indices: 168810373--168810406 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
168810363 TATTTTATAC
168810373 ATTTTTATTTTT
1 ATTTTTATTTTT
168810385 ATATTTTATTTTT
1 AT-TTTTATTTTT
168810398 ATTTATTAT
1 ATTT-TTAT
168810407 CAATTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
ATTTTTATTTTT
Found at i:168810415 original size:19 final size:21
Alignment explanation
Indices: 168810393--168810437 Score: 76
Period size: 19 Copynumber: 2.2 Consensus size: 21
168810383 TTATATTTTA
168810393 TTTTTATTTA-TTATCAAT-T
1 TTTTTATTTATTTATCAATGT
168810412 TTTTTATTTATTTATCAATGT
1 TTTTTATTTATTTATCAATGT
168810433 TTTTT
1 TTTTT
168810438 TCAATCTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 10 0.42
20 8 0.33
21 6 0.25
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.71
Consensus pattern (21 bp):
TTTTTATTTATTTATCAATGT
Found at i:168811088 original size:18 final size:18
Alignment explanation
Indices: 168811056--168811107 Score: 65
Period size: 16 Copynumber: 3.1 Consensus size: 18
168811046 AGGGTTATAG
168811056 ATTAGTGTTTAGGGTTTT
1 ATTAGTGTTTAGGGTTTT
*
168811074 ATTAG-GTTTAGGGGTTT
1 ATTAGTGTTTAGGGTTTT
*
168811091 A--AGAGTTTAGGGTTTT
1 ATTAGTGTTTAGGGTTTT
168811107 A
1 A
168811108 GAGTTAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 2 0.06
16 12 0.39
17 12 0.39
18 5 0.16
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (18 bp):
ATTAGTGTTTAGGGTTTT
Found at i:168811105 original size:15 final size:16
Alignment explanation
Indices: 168811079--168811112 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
168811069 GTTTTATTAG
168811079 GTTTAGGGGTTTAAGA
1 GTTTAGGGGTTTAAGA
*
168811095 GTTTA-GGGTTTTAGA
1 GTTTAGGGGTTTAAGA
168811110 GTT
1 GTT
168811113 AATTTGATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.21, C:0.00, G:0.35, T:0.44
Consensus pattern (16 bp):
GTTTAGGGGTTTAAGA
Found at i:168811544 original size:41 final size:41
Alignment explanation
Indices: 168811480--168811679 Score: 226
Period size: 41 Copynumber: 4.9 Consensus size: 41
168811470 ATTATATGAC
* *
168811480 TTTTAGCGGCGTTTTA-TCGAAAGCGTCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACT-AAAAGCGCCGCTAATGCTCTGGT
*
168811521 TTTTAGCGGCGTTTTACTAAAAGCGCCACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTGGT
* * * * *
168811562 TTTCAGCGGCGTTTCACCAAAAACGCCGCTAATGCTTTGGT
1 TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTGGT
* ** *
168811603 TTTTAGCAGCGTTTTTGGTAAAA-CGCCGCTATTGCTCT-GT
1 TTTTAGCGGCG-TTTTACTAAAAGCGCCGCTAATGCTCTGGT
** *
168811643 TTTTAGCGGCGTTTTACTAAAAATGCCGCTATTGCTC
1 TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTC
168811680 CGTGTTTTAT
Statistics
Matches: 135, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 9 0.07
40 25 0.19
41 93 0.69
42 8 0.06
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTGGT
Found at i:168812220 original size:43 final size:43
Alignment explanation
Indices: 168812158--168812279 Score: 133
Period size: 43 Copynumber: 2.8 Consensus size: 43
168812148 CTGAATTCAT
* * *
168812158 TCACCGGTATTA-CGCCTGCTAGGCTCGAAGCCCGATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAAA
* *
168812200 TCACCGGCATTATAGCCTGCTAGACTTAC-AA-CTCGATATTAAA
1 TCACCGGCATTATAGCCTGCTAGGC-T-CGAAGCCCGATATTAAA
* *
168812243 TCGCCGGCATTATAGCCTGCTAGGCTCGTAGGCCCGA
1 TCACCGGCATTATAGCCTGCTAGGCTCG-AAGCCCGA
168812280 ATAGCACTGT
Statistics
Matches: 65, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
41 1 0.02
42 12 0.18
43 44 0.68
44 7 0.11
45 1 0.02
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAAA
Found at i:168818947 original size:43 final size:43
Alignment explanation
Indices: 168818886--168818984 Score: 135
Period size: 43 Copynumber: 2.3 Consensus size: 43
168818876 CCGGTATTAC
* *
168818886 GCCTGCTAGGCTTGAAGCCCAATATTAACTCACAAACATTATA
1 GCCTGCTAGGCTTAAAGCCCAATATTAAATCACAAACATTATA
** ***
168818929 GCCTGCTAGGCTTAAAGCCTGATATTAAATCACCGGCATTATA
1 GCCTGCTAGGCTTAAAGCCCAATATTAAATCACAAACATTATA
168818972 GCCTGCTAGGCTT
1 GCCTGCTAGGCTT
168818985 GAAGGCCCGA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (43 bp):
GCCTGCTAGGCTTAAAGCCCAATATTAAATCACAAACATTATA
Found at i:168822313 original size:49 final size:49
Alignment explanation
Indices: 168822253--168822510 Score: 439
Period size: 49 Copynumber: 5.3 Consensus size: 49
168822243 GTATGGGATA
168822253 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
168822302 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
168822351 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
168822400 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
168822449 TATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
168822496 TATAAATGTGATAAG
1 TATATATGTGATAAG
168822511 TCCCGAAGAG
Statistics
Matches: 200, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 16 0.08
49 184 0.92
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:168824839 original size:40 final size:40
Alignment explanation
Indices: 168824780--168824980 Score: 332
Period size: 40 Copynumber: 5.0 Consensus size: 40
168824770 AGGTCTCGAC
168824780 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
168824819 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
168824859 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
168824899 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
168824939 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
168824979 GA
1 GA
168824981 CGTGTATTCG
Statistics
Matches: 151, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 4 0.03
40 147 0.97
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:168825173 original size:25 final size:25
Alignment explanation
Indices: 168825144--168825194 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
168825134 ATGTAATAAC
168825144 GAATGAATAAGA-GCACTATGTGTGT
1 GAATG-ATAAGAGGCACTATGTGTGT
* *
168825169 GAATGATTAGAGGCACTGTGTGTGT
1 GAATGATAAGAGGCACTATGTGTGT
168825194 G
1 G
168825195 TGAATTCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.29
Consensus pattern (25 bp):
GAATGATAAGAGGCACTATGTGTGT
Found at i:168828741 original size:49 final size:49
Alignment explanation
Indices: 168828683--168828937 Score: 455
Period size: 49 Copynumber: 5.3 Consensus size: 49
168828673 TTGTATGATA
168828683 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGT
168828732 ATATATGTG--AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGT
*
168828779 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGT
*
168828828 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGT
168828877 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGT
*
168828924 ATAAATGTGATAAG
1 ATATATGTGATAAG
168828938 TCCCGAAGAG
Statistics
Matches: 201, Mismatches: 3, Indels: 6
0.96 0.01 0.03
Matches are distributed among these distances:
47 64 0.32
49 137 0.68
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGT
Found at i:168837541 original size:26 final size:26
Alignment explanation
Indices: 168837512--168837592 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
168837502 TGATAAAAAT
168837512 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
168837538 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
168837564 TTATAATGGTTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
168837589 TGAT
1 TGAT
168837593 GGCATTTCAT
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
25 5 0.10
26 47 0.90
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:168839098 original size:26 final size:26
Alignment explanation
Indices: 168839069--168839121 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
168839059 TTTACAGTTT
168839069 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
168839095 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
168839121 T
1 T
168839122 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:168841078 original size:19 final size:19
Alignment explanation
Indices: 168841034--168841079 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
168841024 TTTCACACGG
* *
168841034 CCTGGCACACGCCTGTATC
1 CCTGGCCCACGCCGGTATC
*
168841053 CCTGGCCCACGCCGGTGTC
1 CCTGGCCCACGCCGGTATC
168841072 CCTGGCCC
1 CCTGGCCC
168841080 GTGTCCTTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.09, C:0.48, G:0.26, T:0.17
Consensus pattern (19 bp):
CCTGGCCCACGCCGGTATC
Found at i:168843413 original size:11 final size:11
Alignment explanation
Indices: 168843394--168843423 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
168843384 CAATGACTCC
168843394 AAAATAATAAT
1 AAAATAATAAT
*
168843405 AACATAATAAT
1 AAAATAATAAT
168843416 AAAATAAT
1 AAAATAAT
168843424 TTATTCGACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (11 bp):
AAAATAATAAT
Found at i:168849808 original size:46 final size:44
Alignment explanation
Indices: 168849730--168849929 Score: 170
Period size: 46 Copynumber: 4.3 Consensus size: 44
168849720 CATGTCTCGA
* * *
168849730 ACATGGTCTTACACTGACACATCTCGTA-GCCGATGCATGTCCCAG
1 ACAT-GTCTTACACTAACTCGTCTCG-AGGCCGATGCATGTCCCAG
* *
168849775 ACATATCTTACACTAACTAACGTCTCGAGGCCGACGCATGTCCCAG
1 ACATGTCTTACACTAACT--CGTCTCGAGGCCGATGCATGTCCCAG
* * *
168849821 ACATGTCTTACACTAGCACTCGTCTCAATGCCGATGCCATGTCCCGG
1 ACATGTCTTACACTA--ACTCGTCTCGAGGCCGATG-CATGTCCCAG
* * * * *
168849868 ACATGGTCTTACACTAGCTC-CCATAATGTGGCCAATGCATGTCCCAG
1 ACAT-GTCTTACACTAACTCGTC-T--CGAGGCCGATGCATGTCCCAG
168849915 ACATGTCTTACACTA
1 ACATGTCTTACACTA
168849930 GGTCACAATA
Statistics
Matches: 127, Mismatches: 18, Indels: 19
0.77 0.11 0.12
Matches are distributed among these distances:
44 11 0.09
45 6 0.05
46 64 0.50
47 26 0.20
48 20 0.16
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.25
Consensus pattern (44 bp):
ACATGTCTTACACTAACTCGTCTCGAGGCCGATGCATGTCCCAG
Done.