Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 543 of 770
Found at i:168851056 original size:11 final size:11
Alignment explanation
Indices: 168851040--168851069 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
168851030 CAATGACTCC
*
168851040 AAAATAATAAT
1 AAAATAATAAA
168851051 AAAATAATAAA
1 AAAATAATAAA
168851062 AAAATAAT
1 AAAATAAT
168851070 TTATTCGACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
AAAATAATAAA
Found at i:168851671 original size:29 final size:29
Alignment explanation
Indices: 168851639--168851893 Score: 192
Period size: 29 Copynumber: 8.8 Consensus size: 29
168851629 GTAACTGTCT
* *
168851639 CTTTTCATATTCGATGGTTGAAATCATCC
1 CTTTTCATATTCGATGGTCGAAACCATCC
*
168851668 CTTTTCATTAATT-GATGGTCGACACCATCC
1 CTTTTCA-T-ATTCGATGGTCGAAACCATCC
* ***
168851698 CTGTTCATAATT-GATGGTCGTCGCCATCC
1 CTTTTCAT-ATTCGATGGTCGAAACCATCC
* * **
168851727 CTTTTCATAGTT-GATGATAGTCACCATCC
1 CTTTTCATA-TTCGATGGTCGAAACCATCC
* * * * *
168851756 CTTTTCATAGTCGATAGCCGAAGCTATCC
1 CTTTTCATATTCGATGGTCGAAACCATCC
**
168851785 CTTTTCATATTCGATGGTCGTCACCATCC
1 CTTTTCATATTCGATGGTCGAAACCATCC
* * * *
168851814 CTTTTCATAATCGATAGCCGAAGCCATCC
1 CTTTTCATATTCGATGGTCGAAACCATCC
* * * * * *
168851843 CTTTTCCTATTCCATAGTCGAAGCTATCT
1 CTTTTCATATTCGATGGTCGAAACCATCC
*
168851872 CTTTTCATATTCGATAGTCGAA
1 CTTTTCATATTCGATGGTCGAA
168851894 GCTATTCTTT
Statistics
Matches: 182, Mismatches: 40, Indels: 8
0.79 0.17 0.03
Matches are distributed among these distances:
28 2 0.01
29 156 0.86
30 21 0.12
31 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (29 bp):
CTTTTCATATTCGATGGTCGAAACCATCC
Found at i:168851806 original size:87 final size:86
Alignment explanation
Indices: 168851694--168851891 Score: 233
Period size: 87 Copynumber: 2.3 Consensus size: 86
168851684 GGTCGACACC
* * *
168851694 ATCCCTGTTCATAATT-GATGGTCGTCGCCATCCCTTTTCATAGTTGAT-GATAGTC-A-CCATC
1 ATCCCTTTTCAT-ATTCGATGGTCGTCACCATCCCTTTTCATA----ATCGATAGCCAAGCCATC
*
168851755 CCTTTTCATAGTCGATAGCCGAAGCT
61 CCTTTTCATAGTCCATAGCCGAAGCT
168851781 ATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAATCGATAGCCGAAGCCATCCCTT
1 ATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAATCGATAGCC-AAGCCATCCCTT
* * *
168851846 TTCCTATTCCATAGTCGAAGCT
65 TTCATAGTCCATAGCCGAAGCT
* *
168851868 ATCTCTTTTCATATTCGATAGTCG
1 ATCCCTTTTCATATTCGATGGTCG
168851892 AAGCTATTCT
Statistics
Matches: 97, Mismatches: 9, Indels: 10
0.84 0.08 0.09
Matches are distributed among these distances:
83 2 0.02
84 6 0.06
86 4 0.04
87 85 0.88
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.36
Consensus pattern (86 bp):
ATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAATCGATAGCCAAGCCATCCCTTT
TCATAGTCCATAGCCGAAGCT
Found at i:168851854 original size:58 final size:57
Alignment explanation
Indices: 168851663--168851853 Score: 238
Period size: 58 Copynumber: 3.3 Consensus size: 57
168851653 TGGTTGAAAT
* * * * * **
168851663 CATCCCTTTTCATTAATTGATGGTCGACACCATCCCTGTTCATAATTGATGGTCGTCGC
1 CATCCCTTTTCA-T-ATTGATGGTCGTCACCATCCCTTTTCATAATCGATAGCCGAAGC
* * *
168851722 CATCCCTTTTCATAGTTGATGATAGTCACCATCCCTTTTCATAGTCGATAGCCGAAGC
1 CATCCCTTTTCATA-TTGATGGTCGTCACCATCCCTTTTCATAATCGATAGCCGAAGC
*
168851780 TATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAATCGATAGCCGAAGC
1 CATCCCTTTTCATATT-GATGGTCGTCACCATCCCTTTTCATAATCGATAGCCGAAGC
*
168851838 CATCCCTTTTCCTATT
1 CATCCCTTTTCATATT
168851854 CCATAGTCGA
Statistics
Matches: 114, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
57 3 0.03
58 99 0.87
59 12 0.11
ACGTcount: A:0.21, C:0.29, G:0.14, T:0.36
Consensus pattern (57 bp):
CATCCCTTTTCATATTGATGGTCGTCACCATCCCTTTTCATAATCGATAGCCGAAGC
Found at i:168852741 original size:21 final size:21
Alignment explanation
Indices: 168852717--168852757 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
168852707 GGGGAAGAAA
168852717 ACCTTTT-TTTAAATTTTATTT
1 ACCTTTTATTT-AATTTTATTT
*
168852738 ACCTTTTATTTTATTTTATT
1 ACCTTTTATTTAATTTTATT
168852758 AAATAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.22, C:0.10, G:0.00, T:0.68
Consensus pattern (21 bp):
ACCTTTTATTTAATTTTATTT
Found at i:168856984 original size:40 final size:40
Alignment explanation
Indices: 168856927--168857006 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
168856917 CGAGCGATAT
* * *
168856927 CTATTGAATCGGCTGAAATGTATGTGCTTTCGAACCATAC
1 CTATTGAATCAGCTGAAACGTATGCGCTTTCGAACCATAC
*
168856967 CTATTGAATCTAG-TGAAACGTATGCGCTTTCGAGCCATAC
1 CTATTGAATC-AGCTGAAACGTATGCGCTTTCGAACCATAC
168857007 TGTAACACCG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 34 0.97
41 1 0.03
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (40 bp):
CTATTGAATCAGCTGAAACGTATGCGCTTTCGAACCATAC
Found at i:168859759 original size:40 final size:39
Alignment explanation
Indices: 168859699--168859801 Score: 100
Period size: 39 Copynumber: 2.6 Consensus size: 39
168859689 AACTGTTACA
* * *
168859699 CATACCTACCGATCCCACTGAAATGCATG-TGCTATCGAGC
1 CATACCTACTGATTCTACTGAAA-GCATGCT-CTATCGAGC
** * * *
168859739 TTTACCTACTGATTCTACTGAAAGTATGCTTTATTGAGC
1 CATACCTACTGATTCTACTGAAAGCATGCTCTATCGAGC
*
168859778 CATACCTAATGATTCTACTGAAAG
1 CATACCTACTGATTCTACTGAAAG
168859802 TAGCTCAAAT
Statistics
Matches: 51, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
39 32 0.63
40 19 0.37
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (39 bp):
CATACCTACTGATTCTACTGAAAGCATGCTCTATCGAGC
Found at i:168859899 original size:37 final size:38
Alignment explanation
Indices: 168859803--168859899 Score: 135
Period size: 38 Copynumber: 2.6 Consensus size: 38
168859793 TACTGAAAGT
* *
168859803 AGCTCAAATGAGCAAATTTTATTGTTATATTAATGTGA
1 AGCTCAAATGAGCAAATTCTACTGTTATATTAATGTGA
168859841 AGCTCAAATGAGCAAATTCTACTGTTATATTGAAT-TG-
1 AGCTCAAATGAGCAAATTCTACTGTTATATT-AATGTGA
* *
168859878 AGCTCAAATGAGTAAAATCTAC
1 AGCTCAAATGAGCAAATTCTAC
168859900 AGATAAACTG
Statistics
Matches: 54, Mismatches: 4, Indels: 3
0.89 0.07 0.05
Matches are distributed among these distances:
37 20 0.37
38 31 0.57
39 3 0.06
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.34
Consensus pattern (38 bp):
AGCTCAAATGAGCAAATTCTACTGTTATATTAATGTGA
Found at i:168865489 original size:40 final size:39
Alignment explanation
Indices: 168865444--168865553 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 39
168865434 CTGGAAATTA
* * *
168865444 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--ATAC
*
168865485 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTATAC
*
168865523 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
168865554 ACGTGATTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
38 2 0.03
39 29 0.48
40 30 0.49
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTATAC
Found at i:168865538 original size:39 final size:37
Alignment explanation
Indices: 168865444--168865553 Score: 130
Period size: 39 Copynumber: 2.8 Consensus size: 37
168865434 CTGGAAATTA
* *
168865444 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGGC
**
168865482 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTATTC
1 T--ATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGT-GGC
168865523 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCA-TTGTGC
168865554 ACGTGATTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
38 1 0.02
39 30 0.48
40 30 0.48
41 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (37 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGGC
Found at i:168875746 original size:41 final size:41
Alignment explanation
Indices: 168875678--168875831 Score: 174
Period size: 41 Copynumber: 3.8 Consensus size: 41
168875668 GGGTGTAAAT
* *
168875678 CCGAGCTTGGGTTCGAAGGGCTTTTGAGCCAGTGCTAATAA
1 CCGAGCTTAGTTTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* *
168875719 CCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTG-TCATAA
1 CCGAGCTTAGTTTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * *
168875759 CCG-GCTTAGTTCCGAAGGGCCTTCGAGCCAGTGGCCTAAT--
1 CCGAGCTTAGTTTCGAAGGGCTTTTGAGCCAGT-G-CTAATAA
* *
168875799 CCGAGCTTGGTCTCGAAGGGC-TTTGAGCCAGTG
1 CCGAGCTTAGTTTCGAAGGGCTTTTGAGCCAGTG
168875832 TTAAGAATCG
Statistics
Matches: 96, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
39 26 0.27
40 22 0.23
41 45 0.47
42 3 0.03
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.26
Consensus pattern (41 bp):
CCGAGCTTAGTTTCGAAGGGCTTTTGAGCCAGTGCTAATAA
Found at i:168884179 original size:40 final size:39
Alignment explanation
Indices: 168884102--168884242 Score: 149
Period size: 40 Copynumber: 3.5 Consensus size: 39
168884092 CTTGGGTTCG
*
168884102 AAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTTCA
1 AAGGGCTTTTGAGCCAGTG-TCATAACCG-ACTTAGTTTCA
* *
168884143 AAGGGCTTTTGAGCCAGTGTCATAACCAGACTTAGTTCCG
1 AAGGGCTTTTGAGCCAGTGTCATAACC-GACTTAGTTTCA
* * * * * *
168884183 AAGGGCGTTCGAGCCAGTGGCCTAATCCGAGCTTGGTCTCA
1 AAGGGCTTTTGAGCCAGTGTCATAA-CCGA-CTTAGTTTCA
168884224 AAGGGC-TTTGAGCCAGTGT
1 AAGGGCTTTTGAGCCAGTGT
168884243 TAAGAATCGT
Statistics
Matches: 84, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
40 50 0.60
41 34 0.40
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
AAGGGCTTTTGAGCCAGTGTCATAACCGACTTAGTTTCA
Found at i:168896703 original size:40 final size:40
Alignment explanation
Indices: 168896644--168896851 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
168896634 CAATTGAATG
* * * *
168896644 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
168896684 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
168896724 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
168896764 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
168896804 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
168896844 ATATCCGG
1 ATATCCGG
168896852 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:168896782 original size:80 final size:80
Alignment explanation
Indices: 168896645--168896851 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
168896635 AATTGAATGA
* * ** * * *
168896645 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
168896710 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
168896723 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
168896788 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
168896805 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
168896852 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:168901269 original size:27 final size:27
Alignment explanation
Indices: 168901248--168901661 Score: 286
Period size: 27 Copynumber: 15.4 Consensus size: 27
168901238 TTTACCAAAG
* *
168901248 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCATTT
*
168901275 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCATTT
* *
168901302 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCATTT
* * *
168901329 TACCCTCGATTTTTAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACCATTT
* * * ** **
168901356 TATCCTCAATTTACAAAATTATTGA-AA
1 TACCCTCGATTTATAAAATTA-CCATTT
* * ***
168901383 TACCCT-TAGTTTACAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCATTT
* * ***
168901410 TACCCTTGA-TCAGTAAAATTACCAAAG
1 TACCCTCGATTTA-TAAAATTACCATTT
* * * ***
168901437 TACCCCCGGTTTATAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCATTT
* * * **
168901464 TACCGTCGATTT-TAAAACTACTGA-AA
1 TACCCTCGATTTATAAAATTAC-CATTT
* * *
168901490 TGCCCTCGATTTGTAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCATTT
*
168901517 TACCCTCGATTTAT-AAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCATTT
* * *
168901543 CACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCATTT
*
168901570 TACCCTCAATTTA-AAGAATTACCATTT
1 TACCCTCGATTTATAA-AATTACCATTT
* *
168901597 TACCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACCATTT
* *
168901624 TACCCTC-AGTTTACAAAATTACCGTTT
1 TACCCTCGA-TTTATAAAATTACCATTT
168901651 TACCCTCGATT
1 TACCCTCGATT
168901662 GTGAAATTAC
Statistics
Matches: 321, Mismatches: 52, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
26 50 0.16
27 264 0.82
28 7 0.02
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.36
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCATTT
Found at i:168901322 original size:54 final size:54
Alignment explanation
Indices: 168901248--168901661 Score: 318
Period size: 54 Copynumber: 7.7 Consensus size: 54
168901238 TTTACCAAAG
* *
168901248 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCATTT
* * * *
168901302 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTTTAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCATTT
* * * ** *** * * ***
168901356 TATCCTCAATTTACAAAATTATTGAAATACCCT-TAGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGA-TTTATAAAATTACCATTT
* * **** * * * ***
168901410 TACCCTTGA-TCAGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTAAAA
1 TACCCTCGATTTA-TAAAATTACCGTTTTACCCTCGATTTATAAAATTACCATTT
* * * *** * * *
168901464 TACCGTCGATTT-TAAAACTACTGAAATGCCCTCGATTTGTAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCATTT
* * *
168901517 TACCCTCGATTTAT-AAATTACCGTTTCACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCATTT
* * * *
168901570 TACCCTCAATTTA-AAGAATTACCATTTTACCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTATAA-AATTACCGTTTTACCCTCGATTTATAAAATTACCATTT
*
168901624 TACCCTC-AGTTTACAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGA-TTTATAAAATTACCGTTTTACCCTCGATT
168901662 GTGAAATTAC
Statistics
Matches: 281, Mismatches: 70, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
53 84 0.30
54 194 0.69
55 3 0.01
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.36
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCATTT
Found at i:168901376 original size:81 final size:81
Alignment explanation
Indices: 168901248--168901661 Score: 318
Period size: 81 Copynumber: 5.1 Consensus size: 81
168901238 TTTACCAAAG
* * * * *
168901248 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
* *
168901313 TATAGAATTACCGTTT
66 TACAAAATTACCGTTT
* * * * ** ** *
168901329 TACCCTCGATTTTTAGAATTACTATTTTATCCTCAATTTACAAAATTATTGA-AATACCCT-TAG
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTA-CCATTTTACCCTCGA-
****
168901392 TTTACAAAATTACCAAAA
64 TTTACAAAATTACCGTTT
* * * *** * * * * *** *
168901410 TACCCTTGA-TCAGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTAAAATACCGTCGAT
1 TACCCTCGATTTA-TAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGAT
* * * ***
168901474 TT-TAAAACTACTGAAA
65 TTACAAAATTACCGTTT
* * * * *
168901490 TGCCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTA-TAAATTACCGTTTCACCCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
168901554 TACAAAATTACCGTTT
66 TACAAAATTACCGTTT
* * *
168901570 TACCCTCAATTTAAAGAATTACCATTTTACCCTCAATTTACAAAATTACCATTTTACCCTC-AGT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGA-T
168901634 TTACAAAATTACCGTTT
65 TTACAAAATTACCGTTT
168901651 TACCCTCGATT
1 TACCCTCGATT
168901662 GTGAAATTAC
Statistics
Matches: 250, Mismatches: 74, Indels: 18
0.73 0.22 0.05
Matches are distributed among these distances:
79 17 0.07
80 85 0.34
81 146 0.58
82 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.36
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
TACAAAATTACCGTTT
Found at i:168901485 original size:26 final size:26
Alignment explanation
Indices: 168901423--168901501 Score: 68
Period size: 26 Copynumber: 3.0 Consensus size: 26
168901413 CCTTGATCAG
* * * * *
168901423 TAAAATTACCAAAGTACCCCCGGTTT
1 TAAAACTACTAAAATACCCTCGATTT
* *
168901449 ATAAAATTACTAAAATACCGTCGATTT
1 -TAAAACTACTAAAATACCCTCGATTT
* *
168901476 TAAAACTACTGAAATGCCCTCGATTT
1 TAAAACTACTAAAATACCCTCGATTT
168901502 GTAGAATTAC
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
26 22 0.51
27 21 0.49
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (26 bp):
TAAAACTACTAAAATACCCTCGATTT
Found at i:168901720 original size:27 final size:26
Alignment explanation
Indices: 168901674--168901753 Score: 81
Period size: 27 Copynumber: 3.0 Consensus size: 26
168901664 GAAATTACTG
168901674 AAATACCCCTGTAGGATAGAATTACCA
1 AAATACCCCTGTAGG-TAGAATTACCA
* *
168901701 AAATACCCCTGTAAGGTAGATTTACCG
1 AAATACCCCTGT-AGGTAGAATTACCA
* * *
168901728 AGATA-CCTTGTGAGGTAAAATTACCA
1 AAATACCCCTGT-AGGTAGAATTACCA
168901754 TTTTGCCCCT
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
26 16 0.36
27 25 0.57
28 3 0.07
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (26 bp):
AAATACCCCTGTAGGTAGAATTACCA
Found at i:168902187 original size:25 final size:25
Alignment explanation
Indices: 168902157--168902252 Score: 102
Period size: 25 Copynumber: 3.6 Consensus size: 25
168902147 CATTCACATT
*
168902157 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
*
168902182 CCGATTCTGATTTTGATTCTGTTACCTGATA
1 -C-----TGATTCTGATTCTGTTACCTGATA
* *
168902213 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGTTACCTGATA
168902238 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
168902253 ATTCTAGTTC
Statistics
Matches: 62, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
25 36 0.58
26 1 0.02
30 1 0.02
31 24 0.39
ACGTcount: A:0.18, C:0.20, G:0.17, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTGATA
Found at i:168902192 original size:31 final size:31
Alignment explanation
Indices: 168902154--168902224 Score: 133
Period size: 31 Copynumber: 2.3 Consensus size: 31
168902144 TTGCATTCAC
168902154 ATTCTGATTTTGATTCTGTTACCTGATACCG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
*
168902185 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
168902216 ATTCTGATT
1 ATTCTGATT
168902225 CTGTCACCTG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACCG
Found at i:168902198 original size:6 final size:6
Alignment explanation
Indices: 168902154--168902266 Score: 81
Period size: 6 Copynumber: 18.3 Consensus size: 6
168902144 TTGCATTCAC
* * * *
168902154 ATTCTG ATTTTG ATTCTG -TTACCTG ATACCG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
168902203 -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
168902253 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
168902267 AATGTTTCTT
Statistics
Matches: 84, Mismatches: 12, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
5 6 0.07
6 65 0.77
7 10 0.12
8 3 0.04
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:168905202 original size:28 final size:28
Alignment explanation
Indices: 168905157--168905225 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
168905147 CTTAAAACCC
*
168905157 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
168905184 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
168905212 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
168905226 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:168907321 original size:40 final size:40
Alignment explanation
Indices: 168907236--168907386 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
168907226 AATTGAATGA
* * * **
168907236 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
168907276 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
168907317 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
168907356 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
168907387 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:168907400 original size:40 final size:40
Alignment explanation
Indices: 168907273--168907402 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
168907263 ATGCTGGAAA
* * *
168907273 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
168907313 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
168907353 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
168907393 TTATATCCGG
1 TTATATCCGG
168907403 TTATATTCCG
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:168915277 original size:40 final size:40
Alignment explanation
Indices: 168915211--168915361 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
168915201 AAATTGAATG
* * *
168915211 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
168915250 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
168915290 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
168915330 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
168915362 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:168915375 original size:40 final size:40
Alignment explanation
Indices: 168915248--168915377 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
168915238 ATGCTGGAAA
* * *
168915248 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
168915288 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
168915328 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
168915368 TTATATCCGG
1 TTATATCCGG
168915378 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:168926685 original size:24 final size:24
Alignment explanation
Indices: 168926646--168926699 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
168926636 CCGGTTAGGT
* * **
168926646 TCCCGGCGGTGCTCCGACGATTCA
1 TCCCGGCGATGATCCGACGAGCCA
*
168926670 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
168926694 TCCCGG
1 TCCCGG
168926700 GATACACAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.13, C:0.39, G:0.31, T:0.17
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:168926824 original size:58 final size:59
Alignment explanation
Indices: 168926733--168926853 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
168926723 CCCTCTCCAA
* * *
168926733 TCCCAAAAGGTAGAATTCGGACACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGACACCGTTACATGTCCAGTACCCAACAATGAATGAATCG
* * *
168926792 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCAGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGACACCGTTACATGTCCAGTACCCAACAATGAATGAATCG
168926850 TCCC
1 TCCC
168926854 TGTCCCTCCC
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 52 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGACACCGTTACATGTCCAGTACCCAACAATGAATGAATCG
Found at i:168927276 original size:24 final size:24
Alignment explanation
Indices: 168927249--168927302 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
168927239 CCGGTTAGAT
*
168927249 TCCCGGCGGTGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
* * *
168927273 TCCCGTCGGTGCTCTGGCGAGCTA
1 TCCCGGCGGTGCTCCGGCGAGCCA
168927297 TCCCGG
1 TCCCGG
168927303 AATATCGAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.07, C:0.39, G:0.33, T:0.20
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:168927583 original size:42 final size:42
Alignment explanation
Indices: 168927489--168928502 Score: 983
Period size: 42 Copynumber: 24.0 Consensus size: 42
168927479 CACATTGCTG
* * * * * * *
168927489 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAAGAC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * *
168927532 GTTTGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGCCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * **
168927574 CTTGGTCGTGCGGGAGCCTCGGGCACCACCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
168927616 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * ** *
168927659 CCTGGTCGCGCGGGAGCCTC-GATACCATCGACAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
168927701 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGG-ACCCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA-CCTAGGCC
* *
168927743 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * *
168927785 CCTGGTCGTGCGGGAGCATCGGCCACCATCGGCAACCTAGGCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
168927828 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * ** * * *
168927870 CCTGGTCATGTAGGAGCTTCAGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * *
168927913 CCTGGTCATGCGAGAGCCTCGAGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * **
168927955 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
168927997 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGG-C
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
* *
168928039 CTCTAGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
168928083 CTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCGCCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * *
168928124 CTTGGTCGTGCAGGAGCCTTGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
168928166 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-C
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * * *
168928208 CTTGATCGTGCGAGAACCTCGGGCACAACCGGCAACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * * * **
168928250 CTTGATCGTGTGAGAACCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** * *
168928292 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGTAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
* * * *
168928335 CTTGGTCGTGCGGGAGCCTCGGGCAGCATTGGCACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC
* * ** * **
168928378 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTAGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** * * * **
168928420 CTTGGAT-GTGCGGGAGCCTCAAGCAGCATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
168928462 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG
168928503 ACGTTGGGTG
Statistics
Matches: 830, Mismatches: 116, Indels: 50
0.83 0.12 0.05
Matches are distributed among these distances:
41 35 0.04
42 515 0.62
43 276 0.33
44 4 0.00
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:168927672 original size:127 final size:128
Alignment explanation
Indices: 168927489--168928518 Score: 1022
Period size: 127 Copynumber: 8.1 Consensus size: 128
168927479 CACATTGCTG
* * * * * * * ** *
168927489 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAAGACGTTTGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
* * * *
168927554 GCACCATCGGC-ACCTAGCCCCTTGGTCGTGCGGGAGCCTCGGGCACCACCGGCACCTTGGTG
66 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTC
*
168927616 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGCGCGGGAGCCTC-G
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
** * * *
168927680 ATACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG-ACCCTAGGCC
66 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA-CCTAGGTC
* *
168927743 CTTGG-TCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGGCCCCTGGTCGTGCGGGAGCATCG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * * *
168927806 GCCACCATCGGCAACCTAGGCGCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
65 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTC
* * * * * * *
168927870 CCTGGTCATGT--AGGAGCTTCAGCCACCATCGGCAACCTAGGCCCCTGGTCATGCGAGAGCCTC
1 CTTGG--ATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC
* * * *
168927933 GAGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
64 GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTC
* * * *
168927997 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCTCTAGTCGTGCGAGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
* * *
168928062 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCGCCTAGGCC
66 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTC
* * * *
168928124 CTTGG-TCGTGCAGGAGCCTTGGCCACCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTC
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTC
* * * * *
168928186 GGGCACCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGGGCACAACCGGCAACCTAGG-
64 GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGT
168928249 C
128 C
* * * * ** *
168928250 CTT-GATCGTGTGAGAACCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTC
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTC
** * * * * *
168928312 GAACACCATCGGTAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGGGCAGCATTGGCACCTTGGTG
64 GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGT-
168928377 C
128 C
* * ** * ** * *
168928378 CTTGGATGTGCGGGAGCCTCGAGCAGCATTAGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCA
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCG
* * * * ** * *
168928441 AGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGA
65 GGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGT
168928504 C
128 C
* *
168928505 GTTGGGTGTGCGGG
1 CTTGGATGTGCGGG
168928519 TACCTCGAGC
Statistics
Matches: 762, Mismatches: 118, Indels: 46
0.82 0.13 0.05
Matches are distributed among these distances:
125 27 0.04
126 166 0.22
127 427 0.56
128 136 0.18
129 5 0.01
130 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.18
Consensus pattern (128 bp):
CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTC
Found at i:168928532 original size:85 final size:86
Alignment explanation
Indices: 168927537--168928502 Score: 1008
Period size: 85 Copynumber: 11.4 Consensus size: 86
168927527 AAGACGTTTG
*
168927537 TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGCCCCTTGGTCGTGCGGGAGCCTCGGGCACC
1 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* * **
168927601 ACCGGCACCTTGGTGCTTGGA
66 ATCGGCACCTAGGCCCTTGGA
* * **
168927622 T-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGCGCGGGAGCCTC-GATACC
1 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
*
168927685 ATCGACAACCTAGGCCCTTGG-
66 ATCGGC-ACCTAGGCCCTTGGA
* * *
168927706 TCGTGCGAGAGCCTCGGGCACCATCGG-ACCCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACC
1 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* *
168927770 ATCGGAACCTAGGCCCCTGG-
66 ATCGGCACCTAGGCCCTTGGA
* * * *
168927790 TCGTGCGGGAGCATCGGCCACCATCGGCAACCTAGGCGCTTGGTCGTGCGGGAGCCTCGGCCACC
1 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
*
168927855 ATCGGCACCTAGGCCCCTGG-
66 ATCGGCACCTAGGCCCTTGGA
* ** * * * * * * *
168927875 TCATGTAGGAGCTTCAGCCACCATCGGCAACCTAGGCCCCTGGTCATGCGAGAGCCTCGAGCACC
1 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
*
168927940 ATCGGCACCTAGGCCCCTGG-
66 ATCGGCACCTAGGCCCTTGGA
* **
168927960 TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCAC
1 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
* *
168928023 CATCGGTAACCTAGG-CCTCTAG-
65 CATCGG-CACCTAGGCCCT-TGGA
* *
168928045 TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACC
1 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
*
168928109 ATCGGCGCCTAGGCCCTTGG-
66 ATCGGCACCTAGGCCCTTGGA
* * *
168928129 TCGTGCAGGAGCCTTGGCCACCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCAC
1 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
168928192 CATCGGCAACCTAGG-CCTT-GA
65 CATCGGC-ACCTAGGCCCTTGGA
* * * * * * * *
168928213 TCGTGCGAGAACCTCGGGCACAACCGGCAACCTAGG-CCTTGATCGTGTGAGAACCTCGGGCACC
1 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* **
168928277 ATCGGCACCTTGGTGCTTGGA
66 ATCGGCACCTAGGCCCTTGGA
** * * *
168928298 T-GTGCGGGAGCCTCGAACACCATCGGTAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGGGCAGC
1 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* * *
168928362 ATTGGCACCTTGGTGCCTTGGA
66 ATCGGCACCTAGG-CCCTTGGA
* * ** * ** ** *
168928384 T-GTGCGGGAGCCTCGAGCAGCATTAGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCAAGCAG
1 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
* * **
168928446 CATTGGCACCTTGGTGCTTGGA
65 CATCGGCACCTAGGCCCTTGGA
*
168928468 T-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
168928503 ACGTTGGGTG
Statistics
Matches: 742, Mismatches: 116, Indels: 46
0.82 0.13 0.05
Matches are distributed among these distances:
83 37 0.05
84 284 0.38
85 366 0.49
86 55 0.07
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (86 bp):
TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
ATCGGCACCTAGGCCCTTGGA
Found at i:168928558 original size:43 final size:43
Alignment explanation
Indices: 168928266--168928561 Score: 275
Period size: 43 Copynumber: 7.0 Consensus size: 43
168928256 CGTGTGAGAA
* * *
168928266 CCTCGGGCACCATCGGCACCTTGGT-GCTTGGATGTGCGGGAG
1 CCTCGAGCAGCATTGGCACCTTGGTGGCTTGGATGTGCGGGAG
* * * * * **
168928308 CCTCGAACACCATCGGTAACCTCGG-CCCTTGG-TCGTGCGGGAG
1 CCTCGAGCAGCATTGG-CACCTTGGTGGCTTGGAT-GTGCGGGAG
* *
168928351 CCTCGGGCAGCATTGGCACCTTGGTGCCTTGGATGTGCGGGAG
1 CCTCGAGCAGCATTGGCACCTTGGTGGCTTGGATGTGCGGGAG
*
168928394 CCTCGAGCAGCATTAGCACCTTGGT-GCTTGGATGTGCGGGAG
1 CCTCGAGCAGCATTGGCACCTTGGTGGCTTGGATGTGCGGGAG
*
168928436 CCTCAAGCAGCATTGGCACCTTGGT-GCTTGGATGTGCGGGAG
1 CCTCGAGCAGCATTGGCACCTTGGTGGCTTGGATGTGCGGGAG
* * * ** *
168928478 CCTCG-GACACCATCGGCAACCTAGGACG-TTGGGTGTGCGGGTA-
1 CCTCGAG-CAGCATTGGC-ACCTTGGTGGCTTGGATGTGCGGG-AG
** * *
168928521 CCTCGAGCAGCAGGGGCACCCTGGTGGCTCGGATGTGCGGG
1 CCTCGAGCAGCATTGGCACCTTGGTGGCTTGGATGTGCGGG
168928562 CTAAAGAAAA
Statistics
Matches: 211, Mismatches: 32, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
41 1 0.00
42 95 0.45
43 111 0.53
44 4 0.02
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.21
Consensus pattern (43 bp):
CCTCGAGCAGCATTGGCACCTTGGTGGCTTGGATGTGCGGGAG
Found at i:168935926 original size:58 final size:58
Alignment explanation
Indices: 168935834--168935944 Score: 177
Period size: 58 Copynumber: 1.9 Consensus size: 58
168935824 CCCAATCCCA
* *
168935834 AAAGGTAGAATTCGGACACCGTTACATGTTCGGTACCCAATAATGAATGAATCATCCT
1 AAAGGTAGAATTCGGACACCGTTACATGTCCGGTACCCAACAATGAATGAATCATCCT
* * *
168935892 AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATC
1 AAAGGTAGAATTCGGACACCGTTACATGTCCGGTACCCAACAATGAATGAATC
168935945 GTCCCTGTCC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 48 1.00
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (58 bp):
AAAGGTAGAATTCGGACACCGTTACATGTCCGGTACCCAACAATGAATGAATCATCCT
Found at i:168941744 original size:42 final size:42
Alignment explanation
Indices: 168941651--168942728 Score: 1104
Period size: 42 Copynumber: 25.5 Consensus size: 42
168941641 CACATTGCTG
* * * * * *
168941651 CTTGGACGTGCTGGAGCCTAGGACGCCATCGGCAACCTAGGAC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * *
168941694 GTTTGTCGTGCGGGAGCCTCGGGCACCATTGGCACCTAGCCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * **
168941736 CTTGGTCGTGCGGGAGCCTCGGGCACCACCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
168941778 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * ** * *
168941821 CCTGGTCGCGCGGGAGCCTC-GATACCATCGACAACCTAGGTC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
168941863 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * *
168941905 CTTGGTCGTGCGAGAGCCTCGGGCACCCTCGGAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
168941947 C-TGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
168941989 CTTGGTCGTGCGGGAGCCTCGGCCACCATCAGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * ** * *
168942031 CCTGGGCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * *
168942074 CCTGGTCATGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * **
168942116 CCTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
168942158 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
168942201 C-TGGTCGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
168942243 CTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
168942284 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
168942326 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
168942369 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * *
168942411 CTTGATCGTGCGAGAACCTCGGGCACCATCGGTAACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
* * * * **
168942453 CTTGATCGTGCGAGAACCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** * *
168942495 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGTAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
* *
168942538 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC
* ** * * * * **
168942581 CTTGGAT-GTGTGGGAGCCTCAAGTAGCATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * * * * **
168942623 CTTGGAT-GTGCAGGAGCCTCGAGCAGCATTGGTACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
168942665 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
168942708 GTTGGGT-GTGCGGGTGCCTCG
1 CTT-GGTCGTGCGGGAGCCTCG
168942729 AGCAGCAGGG
Statistics
Matches: 890, Mismatches: 121, Indels: 48
0.84 0.11 0.05
Matches are distributed among these distances:
41 64 0.07
42 536 0.60
43 287 0.32
44 3 0.00
ACGTcount: A:0.15, C:0.33, G:0.34, T:0.18
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:168941873 original size:169 final size:169
Alignment explanation
Indices: 168941650--168942705 Score: 1195
Period size: 169 Copynumber: 6.2 Consensus size: 169
168941640 GCACATTGCT
* * * * * ** *
168941650 GCTTGGACGTGCTGGAGCCTAGGACGCCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCG
1 GCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * * * *
168941715 GGCACCATTGGC-ACCTAGCCCCTTGGTCGTGCGGGAGCCTCGGGCACCACCGGCACCTTGGTGC
66 GGCACCATCGGCAACCTAGCCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGG-CC
168941779 TTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC
130 TTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGC
* * * * * * * *
168941820 CCCTGG-TCGCGCGGGAGCCTC-GATACCATCGACAACCTAGGTCCTTGGTCGTGCGAGAGCCTC
1 GCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC
* * *
168941883 GGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCCTCGGAACCTAGGCC
65 GGGCACCATCGGCAACCTAGCCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
168941947 CTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGC
130 TTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGC
* * * * ** *
168941988 GCTTGG-TCGTGCGGGAGCCTCGGCCACCATCAGC-ACCTAGGCCCCTGGGCATGTAGGAGCTTC
1 GCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC
* *
168942051 GGCCACCATCGGCAACCTAGGCCCC-TGGTCATGCGAGAGCCTCGGGCACCATCGGCACCTAGGC
65 GGGCACCATCGGCAACCTA-GCCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGG-
* * * *
168942115 CCCTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT
128 CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGC
*
168942157 GCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTGGTCGTGCGGGAGCCTCG
1 GCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *
168942221 AGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCCC
66 GGCACCATCGGCAACCTAGCCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGG-CC
*
168942285 TTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGC
130 TTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGC
* *
168942325 CCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
1 GCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * * *
168942390 GGCACCATCGGCAACCTAG-GCCTTGATCGTGCGAGAACCTCGGGCACCATCGGTAACCTAGGCC
66 GGCACCATCGGCAACCTAGCCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG-CACCTAGGCC
* * * * *
168942454 TTGATCGTGCGAGAACCTCGGGCACCATCGGCACCTTGGT
130 TTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGC
* * * *
168942494 GCTTGGATGTGCGGGAGCCTCGAACACCATCGGTAACCTCGGCCCTTGGTCGTGCGGGAGCCTCG
1 GCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* ** * * ** * * * *
168942559 GGCACCATCGGC-ACCTTGGTGCCTTGGAT-GTGTGGGAGCCTCAAGTAGCATTGGCACCTTGGT
66 GGCACCATCGGCAACC-TAGCCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGG-
* * * * * * * *
168942622 GCTTGGAT-GTGCAGGAGCCTCGAGCAGCATTGGTACCTTGGT
128 CCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGC
168942664 GCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
1 GCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
168942706 ACGTTGGGTG
Statistics
Matches: 763, Mismatches: 105, Indels: 36
0.84 0.12 0.04
Matches are distributed among these distances:
167 1 0.00
168 212 0.28
169 390 0.51
170 158 0.21
171 2 0.00
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.18
Consensus pattern (169 bp):
GCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
GGCACCATCGGCAACCTAGCCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCT
TGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGC
Found at i:168942208 original size:295 final size:298
Alignment explanation
Indices: 168941651--168942571 Score: 1169
Period size: 295 Copynumber: 3.1 Consensus size: 298
168941641 CACATTGCTG
* * * * *
168941651 CTTGGACGTGCTGGAGCCTAGGACGCCATCGGCAACCTAGGACG-TTTGTCGTGCGGGAGCCTCG
1 CTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGG-CGCTTGGTCGTGCGGGAGCCTCG
* * * * * * * **
168941715 GGCACCATTGGCACCTA-GCCCCTTGGTCGTGCGGGAGCCTCGGGCACCACCGGC-ACCTTGGTG
64 GCCACCATCGGCACCTAGGCCCC-TGGGCATGTGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
168941778 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGCGCGGGAGCCTCG
128 CCTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *
168941842 A-TACCATCGACAACCTAGGTCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGGC
192 AGCACCATCGGC-ACCTAGGTCCTTGGATCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGC
* * *
168941904 CCTTGGTCGTGCGAGAGCCTCGGGCACCCTCGG-AACCTAGGCC
256 CC-TGGTCGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCC
168941947 C-TGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCGCTTGGTCGTGCGGGAGCCTCGG
* * * *
168942011 CCACCATCAGCACCTAGGCCCCTGGGCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCCCC
65 CCACCATCGGCACCTAGGCCCCTGGGCATGTGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCC
* *
168942076 TGGTCATGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGAGC
130 TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGAGC
* * *
168942140 ACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTG
195 ACCATCGGCACCTAGGTCCTTGGATCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTG
168942204 GTCGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCC
260 GTCGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCC
* * *
168942243 CTTGGTCGTGCGAGAGCCTCGGGACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGC
1 CTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCGCTTGGTCGTGCGGGAGCCTCGGC
*
168942307 CACCATCGGCACCTAGG-CCCTTGG-ATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
66 CACCATCGGCACCTAGGCCCCTGGGCATGT--GGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
* * * * *
168942370 CTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGGG
129 CTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGAG
* * * *
168942434 CACCATCGGTAACCTAGG-CCTT-GATCGTGCGAGAACCTCGGGCACCATCGGC-ACCTTGGTGC
194 CACCATCGG-CACCTAGGTCCTTGGATCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGG-CC
* * * *
168942496 TTGGAT-GTGCGGGAGCCTCGAACACCATCGGTAACCTCGGCC
257 CTGG-TCGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCC
168942538 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 CTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCA
168942572 CCTTGGTGCC
Statistics
Matches: 548, Mismatches: 59, Indels: 35
0.85 0.09 0.05
Matches are distributed among these distances:
293 4 0.01
294 17 0.03
295 403 0.74
296 105 0.19
297 19 0.03
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (298 bp):
CTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCGCTTGGTCGTGCGGGAGCCTCGGC
CACCATCGGCACCTAGGCCCCTGGGCATGTGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCT
GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGAGCA
CCATCGGCACCTAGGTCCTTGGATCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTGG
TCGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCC
Found at i:168942428 original size:23 final size:23
Alignment explanation
Indices: 168942402--168942471 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 23
168942392 CACCATCGGC
168942402 AACCTAGGCCTTGATCGTGCGAG
1 AACCTAGGCCTTGATCGTGCGAG
* * * *
168942425 AACCTCGGGC---ACCAT-CG-G
1 AACCTAGGCCTTGATCGTGCGAG
168942443 TAACCTAGGCCTTGATCGTGCGAG
1 -AACCTAGGCCTTGATCGTGCGAG
168942467 AACCT
1 AACCT
168942472 CGGGCACCAT
Statistics
Matches: 33, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
18 1 0.03
19 10 0.30
20 3 0.09
22 3 0.09
23 15 0.45
24 1 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (23 bp):
AACCTAGGCCTTGATCGTGCGAG
Found at i:168942483 original size:23 final size:23
Alignment explanation
Indices: 168942415--168942483 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
168942405 CTAGGCCTTG
168942415 ATCGTGCGAGAACCTCGGGCACC
1 ATCGTGCGAGAACCTCGGGCACC
* * * ***
168942438 ATC--G-G-TAACCTAGGCCTTG
1 ATCGTGCGAGAACCTCGGGCACC
168942457 ATCGTGCGAGAACCTCGGGCACC
1 ATCGTGCGAGAACCTCGGGCACC
168942480 ATCG
1 ATCG
168942484 GCACCTTGGT
Statistics
Matches: 30, Mismatches: 12, Indels: 8
0.60 0.24 0.16
Matches are distributed among these distances:
19 11 0.37
20 1 0.03
21 2 0.07
22 1 0.03
23 15 0.50
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (23 bp):
ATCGTGCGAGAACCTCGGGCACC
Found at i:168942749 original size:85 final size:85
Alignment explanation
Indices: 168941635--168942764 Score: 939
Period size: 85 Copynumber: 13.4 Consensus size: 85
168941625 GGTGCGGGAG
** * * * * * * * * *
168941635 CATCGGCACATTGCTGCTTGGACGTGCTGGAGCCTAGGACGCCATCGGCAACCTAGGACGTTTGT
1 CATCGGCACCCTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
*
168941700 CGTGCGGGAGCCTCGGGCAC
66 CGTGCGGGAGCCTCGAGCAC
* *** * * **
168941720 CATTGGCA-CCTAGCCCCTTGG-TCGTGCGGGAGCCTCGGGCACCACCGGC-ACCTTGGTGCTTG
1 CATCGGCACCCT-GGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
*
168941782 GAT-GTGCGGGAGCCTCGGGCAC
64 G-TCGTGCGGGAGCCTCGAGCAC
* ** * * ** * *
168941804 CATCGGCAACCTAGGCCCCTGG-TCGCGCGGGAGCCTC-GATACCATCGACAACCTAGGTCCTTG
1 CATCGGCACCCT-GGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
* *
168941867 GTCGTGCGAGAGCCTCGGGCAC
64 GTCGTGCGGGAGCCTCGAGCAC
* ** * *
168941889 CATCGG-AACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCCTCGG-AACCTAGGCCC-TG
1 CATCGGCACCCT-GGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
168941950 GTCGTGCGGGAGCCTCG-GCCAC
64 GTCGTGCGGGAGCCTCGAG-CAC
* * * * *
168941972 CATCGGCAACCTAGGCGCTTGG-TCGTGCGGGAGCCTCGGCCACCATCAGC-ACCTAGGCCCCTG
1 CATCGGCACCCT-GGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
* * ** *
168942035 GGCATGTAGGAGCTTCG-GCCAC
64 GTCGTGCGGGAGCCTCGAG-CAC
* ** * * * *
168942057 CATCGGCAACCTAGGCCCCTGG-TCATGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTG
1 CATCGGCACCCT-GGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
168942120 GTCGTGCGGGAGCCTCGAGCAC
64 GTCGTGCGGGAGCCTCGAGCAC
*
168942142 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGGT
1 CATCGGCACCCTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
168942206 CGTGCGGGAGCCTCGAGCAC
66 CGTGCGGGAGCCTCGAGCAC
* ** *
168942226 CATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGG-ACCATCGGC-ACCTAGGCCCTTG
1 CATCGGCACCCT-GGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
168942288 GTCGTGCGGGAGCCTCG-GCCAC
64 GTCGTGCGGGAGCCTCGAG-CAC
** *
168942310 CATCGGCA-CCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG
1 CATCGGCACCCT-GGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG
*
168942374 TCGTGCGGGAGCCTCGGGCAC
65 TCGTGCGGGAGCCTCGAGCAC
* * * * *
168942395 CATCGGCAACCTAGG-CCTT-GATCGTGCGAGAACCTCGGGCACCATCGGTAACCTAGG-CCTTG
1 CATCGGCACCCT-GGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
* * * *
168942457 ATCGTGCGAGAACCTCGGGCAC
64 GTCGTGCGGGAGCCTCGAGCAC
* ** * *
168942479 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGTAACCTCGGCCCTTGGT
1 CATCGGCACCCTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
*
168942544 CGTGCGGGAGCCTCGGGCAC
66 CGTGCGGGAGCCTCGAGCAC
* * ** * * * * **
168942564 CATCGGCACCTTGGTGCCTTGGATGTGTGGGAGCCTCAAGTAGCATTGGC-ACCTTGGTGCTTGG
1 CATCGGCACCCTGGTG-CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG
* *
168942628 AT-GTGCAGGAGCCTCGAGCAG
65 -TCGTGCGGGAGCCTCGAGCAC
* * * * * *
168942649 CATTGGTACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACGTTGGG
1 CATCGGCACCCTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GG
* *
168942714 T-GTGCGGGTGCCTCGAGCAG
65 TCGTGCGGGAGCCTCGAGCAC
** **
168942734 CAGGGGCACCCTGGTGGCTCAGATGTGCGGG
1 CATCGGCACCCTGGT-GCTTGGATGTGCGGG
168942765 CTAAAGAAAA
Statistics
Matches: 890, Mismatches: 123, Indels: 63
0.83 0.11 0.06
Matches are distributed among these distances:
82 1 0.00
83 68 0.08
84 337 0.38
85 434 0.49
86 50 0.06
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (85 bp):
CATCGGCACCCTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
CGTGCGGGAGCCTCGAGCAC
Found at i:168949425 original size:93 final size:93
Alignment explanation
Indices: 168949313--168949484 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
168949303 CGCCCATAAG
* *
168949313 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
168949378 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
168949406 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
168949471 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
168949485 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:168949481 original size:46 final size:46
Alignment explanation
Indices: 168949306--168949481 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
168949296 TGTAACCCGC
* * *
168949306 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
168949352 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
168949402 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
168949445 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
168949482 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:168953354 original size:15 final size:16
Alignment explanation
Indices: 168953336--168953368 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
168953326 CGTTTTACTT
*
168953336 TTCA-TTGGTTTTTTA
1 TTCATTTGGTTTTGTA
168953351 TTCATTTGGTTTTGTA
1 TTCATTTGGTTTTGTA
168953367 TT
1 TT
168953369 TGTGTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.12, C:0.06, G:0.15, T:0.67
Consensus pattern (16 bp):
TTCATTTGGTTTTGTA
Found at i:168958548 original size:58 final size:59
Alignment explanation
Indices: 168958457--168958577 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
168958447 GTCCTCCCAA
* * *
168958457 TCCCAAAAGGTAGAATTCGGACACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGACACCGTTACATGTCCGGTACCAAACAATGAATGAATCG
* * *
168958516 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCAAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGACACCGTTACATGTCCGGTACCAAACAATGAATGAATCG
168958574 TCCC
1 TCCC
168958578 TGTCCCTCCC
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 52 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.23
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGACACCGTTACATGTCCGGTACCAAACAATGAATGAATCG
Found at i:168958987 original size:11 final size:11
Alignment explanation
Indices: 168958971--168959009 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
168958961 CGGTTAGATC
168958971 CTCCGGCGGTG
1 CTCCGGCGGTG
* *
168958982 CTCCGGCGATC
1 CTCCGGCGGTG
168958993 CATCCGGCGGTG
1 C-TCCGGCGGTG
168959005 CTCCG
1 CTCCG
168959010 AGCCATCCCG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
11 14 0.61
12 9 0.39
ACGTcount: A:0.05, C:0.41, G:0.36, T:0.18
Consensus pattern (11 bp):
CTCCGGCGGTG
Found at i:168959041 original size:23 final size:23
Alignment explanation
Indices: 168958973--168959043 Score: 103
Period size: 23 Copynumber: 3.2 Consensus size: 23
168958963 GTTAGATCCT
*
168958973 CCGGCGGTGCTCCGGCGATCCAT-
1 CCGGCGGTGCT-CGGCGAGCCATC
168958996 CCGGCGGTGCTC--CGAGCCATC
1 CCGGCGGTGCTCGGCGAGCCATC
168959017 CCGGCGGTGCTCGGCGAGCCATC
1 CCGGCGGTGCTCGGCGAGCCATC
168959040 CCGG
1 CCGG
168959044 AATATCGAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
20 7 0.16
21 12 0.27
22 1 0.02
23 24 0.55
ACGTcount: A:0.08, C:0.41, G:0.37, T:0.14
Consensus pattern (23 bp):
CCGGCGGTGCTCGGCGAGCCATC
Found at i:168959519 original size:42 final size:42
Alignment explanation
Indices: 168959270--168959714 Score: 493
Period size: 41 Copynumber: 10.8 Consensus size: 42
168959260 CCTAGACGTT
*
168959270 TCGTGCGGGAGCCTC-GGCACCATCGGCACCTA-GCCCCTTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCC-TGG
* * ** *
168959311 TCGT-CGGGAGCCTCGGGCACCACCGGCACCT-GGTGCTTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCCTGG
168959351 AT-GTGCGGGAGCCT-GGGCACCATCGGCAACCTAGGCCCCTGG
1 -TCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCCTGG
** * *
168959393 TCCG-GC-GGAGCCTC-GATACCATCGCAACCTAGGCCCTTGG
1 T-CGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCCTGG
* *
168959433 TCGTGCGAGAGCCTCGGGCACCATCGG-ACCTAGGCCCTTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCCTGG
*
168959474 TCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCCCCTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCCTGG
* * *
168959516 TCGTGCGGGAGCCTCGGCCACCATCGGCAA-CTAGGCGCTTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCCTGG
* *
168959558 TCGTGCGGGAG-CTCGGCCACCATCGGCACCTAGG-CCCTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCCTGG
* ** * * *
168959598 TCATGTAGGAGCTTCAGCCACCATCGGCAACCTAGGCCCCTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCCTGG
* * *
168959641 TCATGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCCTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCCTGG
*
168959683 TCGTGCGGGAGCCTCGGGCACCATCGGCACCT
1 TCGTGCGGGAGCCTCGGGCACCATCGGAACCT
168959715 TGGNNNNNNN
Statistics
Matches: 346, Mismatches: 40, Indels: 35
0.82 0.10 0.08
Matches are distributed among these distances:
39 2 0.01
40 56 0.16
41 132 0.38
42 126 0.36
43 30 0.09
ACGTcount: A:0.15, C:0.36, G:0.33, T:0.16
Consensus pattern (42 bp):
TCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCCTGG
Found at i:168959594 original size:125 final size:126
Alignment explanation
Indices: 168959270--168959714 Score: 572
Period size: 125 Copynumber: 3.6 Consensus size: 126
168959260 CCTAGACGTT
* * *
168959270 TCGTGCGGGAGCCTCGGCACCATCGGCACCTAGCCCCTTGGTCGT-CGGGAGCCTCGGGCACCAC
1 TCGTGCGGGAGCCTCGGCACCATCGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
** *
168959334 CGGCACCT-GGTGCTTGGAT-GTGCGGGAGCCT-GGGCACCATCGGCAACCTAGGCCCCTGG
66 CGGCACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG
** *
168959393 TCCG-GC-GGAGCCTCGATACCATC-GCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACC
1 T-CGTGCGGGAGCCTCGGCACCATCGGCAA-CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
168959455 ATCGG-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGGCCCCTGG
64 ATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG
* *
168959516 TCGTGCGGGAGCCTCGGCCACCATCGGCAACTAGGCGCTTGGTCGTGCGGGAG-CTCGGCCACCA
1 TCGTGCGGGAGCCTCGG-CACCATCGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * * *
168959580 TCGGCACCTAGGCCC-TGGTCATG-TAGGAGCTTCAGCCACCATCGGCAACCTAGGCCCCTGG
65 TCGGCACCTAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG
* * * *
168959641 TCATGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCA
1 TCGTGCGGGAGCCTC-GGCACCATCGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
168959706 TCGGCACCT
65 TCGGCACCT
168959715 TGGNNNNNNN
Statistics
Matches: 282, Mismatches: 25, Indels: 27
0.84 0.07 0.08
Matches are distributed among these distances:
121 3 0.01
122 37 0.13
123 60 0.21
124 60 0.21
125 97 0.34
126 25 0.09
ACGTcount: A:0.15, C:0.36, G:0.33, T:0.16
Consensus pattern (126 bp):
TCGTGCGGGAGCCTCGGCACCATCGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
CGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG
Found at i:168968244 original size:28 final size:27
Alignment explanation
Indices: 168968181--168968250 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
168968171 ATAGTGAGTC
168968181 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
168968208 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
168968236 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
168968251 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:168973593 original size:14 final size:14
Alignment explanation
Indices: 168973574--168973601 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
168973564 TGCCTTGTTC
168973574 TTGTCGAAATAAAA
1 TTGTCGAAATAAAA
168973588 TTGTCGAAATAAAA
1 TTGTCGAAATAAAA
168973602 AGAAGAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (14 bp):
TTGTCGAAATAAAA
Found at i:168974339 original size:34 final size:34
Alignment explanation
Indices: 168974301--168974377 Score: 91
Period size: 34 Copynumber: 2.3 Consensus size: 34
168974291 ACATAATTAT
* *
168974301 ATATGTATAGTTTGGTATAATCAAAAGTGAATAC
1 ATATGTATAGTTTGATATAACCAAAAGTGAATAC
* * * *
168974335 ATATGTATGGTTTGATATCACCAAAGGTGAATAT
1 ATATGTATAGTTTGATATAACCAAAAGTGAATAC
*
168974369 ATATATATA
1 ATATGTATA
168974378 CACATTTATT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.40, C:0.06, G:0.17, T:0.36
Consensus pattern (34 bp):
ATATGTATAGTTTGATATAACCAAAAGTGAATAC
Found at i:168975497 original size:39 final size:39
Alignment explanation
Indices: 168975309--168975499 Score: 310
Period size: 39 Copynumber: 4.9 Consensus size: 39
168975299 ATGCAAGACA
* *
168975309 CTGGAAATGTATCCGGGCTATAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
* * *
168975348 CTGGAAATGTATCAGGGCTAAAGTCCCGCAGGGTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
168975387 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
*
168975426 CTGGAAATGTATCCAGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
* *
168975465 CAGGAAATGTATCCGGGCTAAAGTCCCATAGGCTT
1 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTT
168975500 TGTGTTGGTA
Statistics
Matches: 142, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 142 1.00
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.25
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
Found at i:168980993 original size:40 final size:40
Alignment explanation
Indices: 168980908--168981058 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
168980898 AATTGAATGA
* * *
168980908 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
168980948 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
168980989 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
168981028 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
168981059 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:168981072 original size:40 final size:40
Alignment explanation
Indices: 168980945--168981074 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
168980935 ATGCTGGAAA
* * * *
168980945 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
168980985 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
168981025 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
168981065 TTATATCCGG
1 TTATATCCGG
168981075 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:168991360 original size:40 final size:40
Alignment explanation
Indices: 168991315--168991481 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
168991305 CGGAATACAA
168991315 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
168991355 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
168991395 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * * * *
168991435 CCGGATATAATTTCCAGCA-TAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
168991474 CCGGATAT
1 CCGGATAT
168991482 CATTCAATTG
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 25 0.24
40 80 0.76
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:168994365 original size:40 final size:40
Alignment explanation
Indices: 168994320--168994486 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
168994310 CGGAATATAA
*
168994320 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
168994360 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
168994400 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
168994440 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
168994479 CCGGATAT
1 CCGGATAT
168994487 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:168994470 original size:80 final size:79
Alignment explanation
Indices: 168994336--168994486 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
168994326 ATAACCATGT
*
168994336 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
168994401 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
168994416 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
168994479 CCGGATAT
64 CCGGATAT
168994487 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:169002404 original size:40 final size:38
Alignment explanation
Indices: 169002278--169002406 Score: 159
Period size: 40 Copynumber: 3.3 Consensus size: 38
169002268 CGGAATATAA
*
169002278 CCGGATATAACCAGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTGCAC-AATGCCTTCGGGTCTTAGC
* **
169002317 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-GCAC-AATGCCTTCGGGTCTTAGC
* *
169002357 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAA-TGCCTTCGGGTCTTAGC
169002397 CCGGATATAA
1 CCGGATATAA
169002407 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 13 0.17
40 63 0.83
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (38 bp):
CCGGATATAACCACTGCACAATGCCTTCGGGTCTTAGC
Found at i:169002421 original size:40 final size:40
Alignment explanation
Indices: 169002293--169002440 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
169002283 TATAACCAGT
* * *
169002293 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** *
169002333 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
169002373 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
*
169002413 GCATAATTG--TTCGGG--TTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
169002441 CATTCAATTT
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
36 12 0.13
38 6 0.07
39 2 0.02
40 70 0.76
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:169004804 original size:40 final size:40
Alignment explanation
Indices: 169004759--169004924 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
169004749 CGGAATATAA
169004759 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
169004799 CCGGATAGAA-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
169004838 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
169004878 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
169004917 CCGGATAT
1 CCGGATAT
169004925 CATTCAATTT
Statistics
Matches: 106, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
38 1 0.01
39 46 0.43
40 59 0.56
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:169004823 original size:39 final size:39
Alignment explanation
Indices: 169004775--169004884 Score: 141
Period size: 39 Copynumber: 2.8 Consensus size: 39
169004765 ATAATCACGT
*
169004775 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGA-AAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAGAAACTA
* **
169004814 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAGAAACTA
*
169004854 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
169004885 TAATTTCCAG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 33 0.52
40 30 0.48
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAGAAACTA
Found at i:169012792 original size:40 final size:40
Alignment explanation
Indices: 169012747--169012915 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
169012737 CGGAATATAA
169012747 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
169012787 CCGGATAGAAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATA-TAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
169012828 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
169012868 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
169012908 CCGGATAT
1 CCGGATAT
169012916 CATTCAATTT
Statistics
Matches: 103, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
40 70 0.68
41 33 0.32
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:169021343 original size:48 final size:48
Alignment explanation
Indices: 169021277--169021536 Score: 246
Period size: 48 Copynumber: 5.5 Consensus size: 48
169021267 AAGCTGACGC
* * *
169021277 CATGTCCTAGACAGGTCTTACACTGGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCTGATG
* * ** * * *
169021325 CATGTCCCAGACATGTCTTACACTAGC-TCT-CGTCTCAATGTTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCTGATG
* * * * *
169021371 CATGTCCTAGACATGTCTTACACTAGCTTGTATCTCTCGATG-TCGTTG
1 CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCT-GATG
* * *
169021419 CATGTCCCAGACATGTCTTACACTGGCTTGTATCTTTCAAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCTGATG
* * *
169021467 CATGTCCTAGACATATCTTACACTGGCTCTCGTA-A--T-GTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCT-T-GTATATCTCGAGGCTGATG
*
169021513 CATGTCCCAAACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
169021537 AGCACACATA
Statistics
Matches: 176, Mismatches: 30, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
46 65 0.37
47 6 0.03
48 100 0.57
49 2 0.01
50 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.33
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCTGATG
Found at i:169021400 original size:94 final size:94
Alignment explanation
Indices: 169021277--169021539 Score: 313
Period size: 94 Copynumber: 2.8 Consensus size: 94
169021267 AAGCTGACGC
*
169021277 CATGTCCTAGACAGGTCTTACACTGGCTTGTATATCTCGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCTAGACATGTCTTACACTGGCTTGTATATCTCGAGGCCGATGCATGTCCCAGACATGTC
* *
169021342 TTACACTAGCTCTCG-TC-TCAATGTTGATG
66 TTACACTAGCT-T-GATCTTCAAGGCTGATG
* * * * *
169021371 CATGTCCTAGACATGTCTTACACTAGCTTGTATCTCTCGATGTCGTTGCATGTCCCAGACATGTC
1 CATGTCCTAGACATGTCTTACACTGGCTTGTATATCTCGAGGCCGATGCATGTCCCAGACATGTC
*
169021436 TTACACTGGCTTGTATCTTTCAAGGCTGATG
66 TTACACTAGCTTG-ATC-TTCAAGGCTGATG
* * * *
169021467 CATGTCCTAGACATATCTTACACTGGCTCTCGTA-A--T-GTGGCTGATGCATGTCCCAAACATG
1 CATGTCCTAGACATGTCTTACACTGGCT-T-GTATATCTCGAGGCCGATGCATGTCCCAGACATG
169021528 TCTTACACTAGC
64 TCTTACACTAGC
169021540 ACACATATCA
Statistics
Matches: 144, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
92 1 0.01
93 1 0.01
94 101 0.70
95 1 0.01
96 36 0.25
97 1 0.01
98 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (94 bp):
CATGTCCTAGACATGTCTTACACTGGCTTGTATATCTCGAGGCCGATGCATGTCCCAGACATGTC
TTACACTAGCTTGATCTTCAAGGCTGATG
Found at i:169021431 original size:142 final size:140
Alignment explanation
Indices: 169021277--169021539 Score: 375
Period size: 142 Copynumber: 1.9 Consensus size: 140
169021267 AAGCTGACGC
* * *
169021277 CATGTCCTAGACAGGTCTTACACTGGCTTGTATATCTCGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACAGGTCTTACACTGGCTTGTATATCTCAAGGCCGATGCATGTCCCAGACATATC
* *
169021342 TTACACTAGCTCTCGTCTCAATGT-TGATGCATGTCCTAGACATGTCTTACACTAGCTTGTATCT
66 TTACACTAGCTCTCG--T-AATGTGTGATGCATGTCCCAAACATGTCTTACACTAGCTTGTATCT
169021406 CTCGATGTCGTTG
128 CTCGATGTCGTTG
* * * * *
169021419 CATGTCCCAGACATGTCTTACACTGGCTTGTATCTTTCAAGGCTGATGCATGTCCTAGACATATC
1 CATGTCCCAGACAGGTCTTACACTGGCTTGTATATCTCAAGGCCGATGCATGTCCCAGACATATC
*
169021484 TTACACTGGCTCTCGTAATGTGGCTGATGCATGTCCCAAACATGTCTTACACTAGC
66 TTACACTAGCTCTCGTAATGT-G-TGATGCATGTCCCAAACATGTCTTACACTAGC
169021540 ACACATATCA
Statistics
Matches: 107, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
139 5 0.05
140 1 0.01
142 101 0.94
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (140 bp):
CATGTCCCAGACAGGTCTTACACTGGCTTGTATATCTCAAGGCCGATGCATGTCCCAGACATATC
TTACACTAGCTCTCGTAATGTGTGATGCATGTCCCAAACATGTCTTACACTAGCTTGTATCTCTC
GATGTCGTTG
Found at i:169027535 original size:13 final size:13
Alignment explanation
Indices: 169027517--169027567 Score: 77
Period size: 13 Copynumber: 4.0 Consensus size: 13
169027507 TAAGTAATCG
169027517 CACACGGGCGTGT
1 CACACGGGCGTGT
169027530 CACACGGGCGTGT
1 CACACGGGCGTGT
* *
169027543 CATATGGGCGTGT
1 CACACGGGCGTGT
169027556 CACAC-GGCGTGT
1 CACACGGGCGTGT
169027568 TCCTACCGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
12 7 0.21
13 27 0.79
ACGTcount: A:0.16, C:0.27, G:0.37, T:0.20
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:169030828 original size:24 final size:24
Alignment explanation
Indices: 169030777--169030894 Score: 161
Period size: 23 Copynumber: 5.0 Consensus size: 24
169030767 GCTTTATCAT
*
169030777 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
169030802 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
169030826 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
169030849 ATAACTTGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
169030872 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
169030895 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 44 0.51
24 30 0.35
25 12 0.14
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:169030967 original size:9 final size:9
Alignment explanation
Indices: 169030953--169031005 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
169030943 ACATCATGTG
169030953 CATATCATA
1 CATATCATA
169030962 CATATCATA
1 CATATCATA
169030971 TGCATATCATA
1 --CATATCATA
* *
169030982 CATGTCATGTG
1 CATATCA--TA
169030993 CATATCATA
1 CATATCATA
169031002 CATA
1 CATA
169031006 CCATGTTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 20 0.56
11 16 0.44
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.34
Consensus pattern (9 bp):
CATATCATA
Found at i:169030974 original size:20 final size:20
Alignment explanation
Indices: 169030945--169031011 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
169030935 TTGTGATTAC
169030945 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
169030965 ATCATATGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
169030985 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
169031005 ACCATGT
1 ATCATGT
169031012 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:169030976 original size:11 final size:11
Alignment explanation
Indices: 169030945--169031001 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
169030935 TTGTGATTAC
*
169030945 ATCATGTGCAT
1 ATCATATGCAT
169030956 ATCATA--CAT
1 ATCATATGCAT
169030965 ATCATATGCAT
1 ATCATATGCAT
169030976 ATCATA--CAT
1 ATCATATGCAT
* *
169030985 GTCATGTGCAT
1 ATCATATGCAT
169030996 ATCATA
1 ATCATA
169031002 CATACCATGT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (11 bp):
ATCATATGCAT
Found at i:169033330 original size:46 final size:46
Alignment explanation
Indices: 169033263--169033434 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
169033253 TAACCGCCCC
* * * *
169033263 TAAGTGAACTCAGACTCAACTCAACAAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
* * *
169033309 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATCCA
* * * * *
169033357 TCA-CGAACTCCGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
169033402 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
169033435 ATGCTCAACC
Statistics
Matches: 101, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 2 0.02
46 57 0.56
47 27 0.27
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
Found at i:169033377 original size:93 final size:93
Alignment explanation
Indices: 169033268--169033438 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
169033258 GCCCCTAAGT
* * *
169033268 GAACTCAGACTCAACTCAACAAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
169033333 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
169033361 GAACTCCGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
169033426 CGAGTTCGGATGC
66 CGAGTTCGGATGC
169033439 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:169044092 original size:30 final size:30
Alignment explanation
Indices: 169044058--169044117 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
169044048 ATTTAATACG
169044058 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
169044088 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
169044118 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:169048755 original size:17 final size:18
Alignment explanation
Indices: 169048713--169048761 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
169048703 AGTTGAAAAG
169048713 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
169048732 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
169048749 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
169048762 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:169049650 original size:40 final size:40
Alignment explanation
Indices: 169049584--169049750 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
169049574 AAATTGAATG
* * *
169049584 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
169049623 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
169049663 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
169049703 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
169049743 ATATCCGG
1 ATATCCGG
169049751 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:169051998 original size:48 final size:48
Alignment explanation
Indices: 169051911--169052136 Score: 272
Period size: 48 Copynumber: 4.7 Consensus size: 48
169051901 CATACTGATG
* * * * ** *
169051911 CCATGTCACAAACATAGTCTTACACGAAATCACATATCGAAGCCAATT
1 CCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATT
* * * * * * *
169051959 CCGTATCCTAGATATGGTCTTTCATGGGATCACATATCGACGCCAATC
1 CCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATT
* **
169052007 CCATGTCCCAGACATGGTCTTACATGGGATAACATATCGATGATAATT
1 CCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATT
* *
169052055 CCATGTCCCAGACATGGTCTTACATGGGACCACATATCGATGCCAATG
1 CCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATT
*
169052103 CCATGTCCCAAACATGGTCTTACATGGGATCACA
1 CCATGTCCCAGACATGGTCTTACATGGGATCACA
169052137 ATGCCATAGC
Statistics
Matches: 148, Mismatches: 30, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 148 1.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATT
Found at i:169052178 original size:37 final size:37
Alignment explanation
Indices: 169052116--169052198 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 37
169052106 TGTCCCAAAC
*
169052116 ATGGTCTTACATGGGATCACAATGCCATAGCCCAGCT
1 ATGGTCTTACATGGCATCACAATGCCATAGCCCAGCT
* * * **
169052153 ATGGTCTTACATGTCATTACGATGCCATAGCTTAGCT
1 ATGGTCTTACATGGCATCACAATGCCATAGCCCAGCT
169052190 ATGGTCTTA
1 ATGGTCTTA
169052199 TACATACTCA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.31
Consensus pattern (37 bp):
ATGGTCTTACATGGCATCACAATGCCATAGCCCAGCT
Found at i:169057984 original size:27 final size:26
Alignment explanation
Indices: 169057936--169057987 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
169057926 GCGAGGCTAC
*
169057936 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
169057962 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
169057988 TTGCAACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:169065436 original size:26 final size:25
Alignment explanation
Indices: 169065389--169065437 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
169065379 GCGAGGCTGT
*
169065389 CAGATATTGTGACGAAGTCACCAAA
1 CAGATATTGTGACGAAGCCACCAAA
* *
169065414 CAGATATATGTGGCGAGGCCACCA
1 CAGATAT-TGTGACGAAGCCACCA
169065438 GATTGCAGCG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 7 0.35
26 13 0.65
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.18
Consensus pattern (25 bp):
CAGATATTGTGACGAAGCCACCAAA
Found at i:169069361 original size:43 final size:43
Alignment explanation
Indices: 169069191--169069364 Score: 140
Period size: 43 Copynumber: 4.0 Consensus size: 43
169069181 CATAGGATTC
* * *
169069191 TGATATGTGATTTCATGTAAGACCACATCTGGGACGTTGGCAT
1 TGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
* * * * * * * *
169069234 CGGT-TTGAGATTTACGTGTAAGACCATGTCTGGGACATCGACA-
1 TGATATT-TGA-TTACATGTAAGACCACGTCTGGGACGTTGGCAT
* * * *
169069277 TCATATTTGATTTCGTGTAAAACC-CTGTCTGGGACAG-TGGCAT
1 TGATATTTGATTACATGTAAGACCAC-GTCTGGGAC-GTTGGCAT
*
169069320 TGATATTTGATTACATGTAAGACCACGTCTGGGATGTTGGCAT
1 TGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
169069363 TG
1 TG
169069365 TACAAGCTTT
Statistics
Matches: 97, Mismatches: 26, Indels: 16
0.70 0.19 0.12
Matches are distributed among these distances:
42 26 0.27
43 43 0.44
44 28 0.29
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
TGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:169076214 original size:18 final size:19
Alignment explanation
Indices: 169076181--169076216 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
169076171 TTAAATTTAG
*
169076181 TAAATTAATTGAATTATGT
1 TAAATTAAATGAATTATGT
169076200 TAAATTAAATG-ATTATG
1 TAAATTAAATGAATTATG
169076217 GTGCCAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (19 bp):
TAAATTAAATGAATTATGT
Found at i:169076700 original size:64 final size:64
Alignment explanation
Indices: 169076619--169076801 Score: 176
Period size: 64 Copynumber: 2.8 Consensus size: 64
169076609 AGACATTATG
* *
169076619 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * * *
169076683 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGAC-AGAGAGCTTCGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
169076747 AA
63 AA
* * * *
169076749 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
169076802 CGAACTATAT
Statistics
Matches: 95, Mismatches: 18, Indels: 13
0.75 0.14 0.10
Matches are distributed among these distances:
61 1 0.01
62 11 0.12
63 8 0.08
64 24 0.25
65 18 0.19
66 17 0.18
67 16 0.17
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:169076779 original size:65 final size:66
Alignment explanation
Indices: 169076652--169076779 Score: 161
Period size: 65 Copynumber: 1.9 Consensus size: 66
169076642 TACTATGTGT
* * * *
169076652 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAA
1 ACACCATGTAGACAAGAGAGCTACGAGATAAATG-AGCTAGGTCACATGCGTGGTACCAAGTGAA
169076717 GG
65 GG
* * *
169076719 ACACCATGTAGAC-AGAGAGCTTCGAGATAAACTG-GCTAGGTCACATGGGTGGTACTAAGTG
1 ACACCATGTAGACAAGAGAGCTACGAGATAAA-TGAGCTAGGTCACATGCGTGGTACCAAGTG
169076780 TTCACCATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
65 23 0.43
66 15 0.28
67 15 0.28
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.21
Consensus pattern (66 bp):
ACACCATGTAGACAAGAGAGCTACGAGATAAATGAGCTAGGTCACATGCGTGGTACCAAGTGAAG
G
Found at i:169077886 original size:2 final size:2
Alignment explanation
Indices: 169077879--169077905 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
169077869 TCATGACATG
169077879 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
169077906 GACTAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:169086760 original size:29 final size:29
Alignment explanation
Indices: 169086726--169086857 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
169086716 TACTCGATTT
** * *
169086726 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
169086755 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
169086784 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
169086813 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
169086842 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
169086858 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:169099604 original size:40 final size:39
Alignment explanation
Indices: 169099436--169099606 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
169099426 AGAAATTGAA
* *
169099436 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
169099476 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
169099516 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
169099556 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
169099596 TGATATCCGGG
1 TGATATCCGGG
169099607 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:169103317 original size:37 final size:37
Alignment explanation
Indices: 169103254--169103471 Score: 359
Period size: 37 Copynumber: 5.9 Consensus size: 37
169103244 GCTCAGATGA
* * *
169103254 AATCTCCACACGAAGAT-ATCGAGTCTTACCCGGACAA
1 AATCTCCACACGTAG-TCATCGGGTCTTACCCGGACAT
*
169103291 AATCTCCACACATAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
169103328 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
169103365 AATCTCCACACGTAGTCAT-GGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
169103401 AATCTCCACACGTAGTCATTGGGTCTTACCTGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
169103438 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
169103472 ATATGTTTCC
Statistics
Matches: 171, Mismatches: 8, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
36 37 0.22
37 134 0.78
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:169103415 original size:73 final size:74
Alignment explanation
Indices: 169103254--169103471 Score: 359
Period size: 73 Copynumber: 3.0 Consensus size: 74
169103244 GCTCAGATGA
* * * *
169103254 AATCTCCACACGAAGAT-ATCGAGTCTTACCCGGACAAAATCTCCACACATAGTCATCGGGTCTT
1 AATCTCCACACGTAG-TCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTT
169103318 ACCCGGACAT
65 ACCCGGACAT
169103328 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCAT-GGGTCTTA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTA
169103392 CCCGGACAT
66 CCCGGACAT
* *
169103401 AATCTCCACACGTAGTCATTGGGTCTTACCTGGACATAATCTCCACACGTAGTCATCGGGTCTTA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTA
169103466 CCCGGA
66 CCCGGA
169103472 ATATGTTTCC
Statistics
Matches: 136, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
73 72 0.53
74 64 0.47
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (74 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTA
CCCGGACAT
Found at i:169103469 original size:110 final size:111
Alignment explanation
Indices: 169103254--169103471 Score: 359
Period size: 110 Copynumber: 2.0 Consensus size: 111
169103244 GCTCAGATGA
169103254 AATCTCCACACGAAGATATCGAGTCTTACCCGGACAAAATCTCCACACATAGTCATCGGGTCTTA
1 AATCTCCACACGAAGATATCGAGTCTTACCCGGACAAAATCTCCACACATAGTCATCGGGTCTTA
169103319 CCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
66 CCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* * * * *
169103365 AATCTCCACACGTAG-TCAT-GGGTCTTACCCGGACATAATCTCCACACGTAGTCATTGGGTCTT
1 AATCTCCACACGAAGAT-ATCGAGTCTTACCCGGACAAAATCTCCACACATAGTCATCGGGTCTT
*
169103428 ACCTGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
65 ACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
169103472 ATATGTTTCC
Statistics
Matches: 100, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
110 84 0.84
111 16 0.16
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (111 bp):
AATCTCCACACGAAGATATCGAGTCTTACCCGGACAAAATCTCCACACATAGTCATCGGGTCTTA
CCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:169103640 original size:47 final size:47
Alignment explanation
Indices: 169103609--169103990 Score: 683
Period size: 47 Copynumber: 8.1 Consensus size: 47
169103599 CACTTCCACG
**
169103609 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
169103656 TTCATCACATTGGCCATTCAGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
169103703 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
169103750 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
169103797 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
169103844 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
169103891 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
169103938 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
169103985 TTCATC
1 TTCATC
169103991 TCATAGAATC
Statistics
Matches: 323, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 323 1.00
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:169103709 original size:25 final size:25
Alignment explanation
Indices: 169103634--169103711 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
169103624 ATTCTACCTT
*
169103634 ATCACATATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
*
169103659 AT--CACAT-TGGCCA--TTCAGCCTT-
1 ATCACACATAT-G-CATGTTCA-CATTC
169103681 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
169103706 ATCACA
1 ATCACA
169103712 TTGGCCATTC
Statistics
Matches: 41, Mismatches: 3, Indels: 18
0.66 0.05 0.29
Matches are distributed among these distances:
22 7 0.17
23 10 0.24
24 11 0.27
25 13 0.32
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.32
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:169108172 original size:40 final size:40
Alignment explanation
Indices: 169107819--169108172 Score: 543
Period size: 40 Copynumber: 8.9 Consensus size: 40
169107809 TTATAATTCC
* * * *
169107819 AGCACGAATGC-CTTCGAGG-TTTAGCACGGATATATTACG
1 AGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCACT
* * * *
169107858 AGCACAAATGCTCTTCGGGACTTATCCCGAATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
169107898 CGCACGAATGCTCTTCGGGACTTAGCCCGAATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
169107938 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
169107978 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
169108018 AGCACGAATGCTCTTCGGGACGTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
169108058 AGCACGAATGCTCTTC-GGACTTAGCCCAGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
169108097 AGCACAAATGCTCTTCGGGACTTAGCCCGAATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
169108137 AGCACGAATGCTCTTCGGGACTTAGCCCGGCTATAT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
169108173 AACTCTCAAT
Statistics
Matches: 290, Mismatches: 22, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 48 0.17
40 242 0.83
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
Found at i:169109509 original size:37 final size:37
Alignment explanation
Indices: 169109445--169109553 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
169109435 AGCTCAGATG
* * *
169109445 AAATCTCCACACGAAGTTATCGAGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
169109482 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
169109519 TAATCTCCGCACGTAGTCATCGGATCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
169109554 ATATGTTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:169109729 original size:22 final size:22
Alignment explanation
Indices: 169109701--169109777 Score: 59
Period size: 22 Copynumber: 3.4 Consensus size: 22
169109691 TTCCACGTTC
169109701 ATCACATTGGCCATTCTACCTT
1 ATCACATTGGCCATTCTACCTT
* *
169109723 ATCACATATATG-CATGT-TCACATT
1 ATCACAT-T-GGCCAT-TCT-ACCTT
**
169109747 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTACCTT
169109770 ATCACATT
1 ATCACATT
169109778 CATCACATTG
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 10 0.24
25 7 0.17
ACGTcount: A:0.26, C:0.29, G:0.10, T:0.35
Consensus pattern (22 bp):
ATCACATTGGCCATTCTACCTT
Found at i:169109732 original size:47 final size:47
Alignment explanation
Indices: 169109681--169109776 Score: 131
Period size: 47 Copynumber: 2.0 Consensus size: 47
169109671 GCTTCGCCAG
* *
169109681 ATATATACACT-TCCACGTTCATCACATTGGCCATTCTACCTTATCAC
1 ATATATACA-TGTCCACATTCATCACATTGGCCATTCGACCTTATCAC
* * *
169109728 ATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 ATATATACATGTCCACATTCATCACATTGGCCATTCGACCTTATCAC
169109775 AT
1 AT
169109777 TCATCACATT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
46 1 0.02
47 42 0.98
ACGTcount: A:0.27, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
ATATATACATGTCCACATTCATCACATTGGCCATTCGACCTTATCAC
Found at i:169109775 original size:31 final size:31
Alignment explanation
Indices: 169109740--169109806 Score: 134
Period size: 31 Copynumber: 2.2 Consensus size: 31
169109730 ATATGCATGT
169109740 TCACATTCATCACATTGGCCATTCGGCCTTA
1 TCACATTCATCACATTGGCCATTCGGCCTTA
169109771 TCACATTCATCACATTGGCCATTCGGCCTTA
1 TCACATTCATCACATTGGCCATTCGGCCTTA
169109802 TCACA
1 TCACA
169109807 CATATGCATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.24, C:0.33, G:0.12, T:0.31
Consensus pattern (31 bp):
TCACATTCATCACATTGGCCATTCGGCCTTA
Found at i:169109794 original size:78 final size:78
Alignment explanation
Indices: 169109698--169109854 Score: 278
Period size: 78 Copynumber: 2.0 Consensus size: 78
169109688 CACTTCCACG
* * *
169109698 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCACATTAGCCATT
169109763 CGGCCTTATCACA
66 CGGCCTTATCACA
*
169109776 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTAGCCATT
1 TTCATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCACATTAGCCATT
169109841 CGGCCTTATCACA
66 CGGCCTTATCACA
169109854 T
1 T
169109855 ATTTGCATGT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 75 1.00
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (78 bp):
TTCATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCACATTAGCCATT
CGGCCTTATCACA
Found at i:169109822 original size:47 final size:47
Alignment explanation
Indices: 169109771--169109922 Score: 277
Period size: 47 Copynumber: 3.2 Consensus size: 47
169109761 TTCGGCCTTA
169109771 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGT
1 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGT
* * *
169109818 TCACATTCATCACATTAGCCATTCGGCCTTATCACATATTTGCATGT
1 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGT
169109865 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGT
1 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGT
169109912 TCACATTCATC
1 TCACATTCATC
169109923 TCATAGAATC
Statistics
Matches: 99, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 99 1.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGT
Found at i:169109958 original size:94 final size:94
Alignment explanation
Indices: 169109771--169109943 Score: 242
Period size: 94 Copynumber: 1.9 Consensus size: 94
169109761 TTCGGCCTTA
169109771 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTAG
1 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTAG
* * *** * **
169109836 CCATTCGGCCTTATCACATATTTGCATGT
66 CAATCCGAAATCAAAACATATTTGCATGT
*
169109865 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCTCA-TAG
1 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTAG
*
169109929 -AATCCTAAATCAAAA
66 CAATCCGAAATCAAAA
169109944 TATAAATTTT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
92 6 0.09
93 3 0.04
94 60 0.87
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.32
Consensus pattern (94 bp):
TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTAG
CAATCCGAAATCAAAACATATTTGCATGT
Found at i:169113817 original size:40 final size:40
Alignment explanation
Indices: 169113752--169114105 Score: 579
Period size: 40 Copynumber: 8.9 Consensus size: 40
169113742 TTATAATTCC
* * * *
169113752 AGCACGAATGC-CTTCGAGG-TTTAGCCTGGATATATTACG
1 AGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCACT
* *
169113791 AGCACGAATGCTCTTCGGGACTTAGCCCGAATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
169113831 AGCACGAATACTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
169113871 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
169113911 AGCAGGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
169113951 AGCACGAATGCTCTTCGGGACATAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
169113991 AGCACGAATGCTCTTC-GGACTTAGCACGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
169114030 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
169114070 AGCACGAATGCTCTTCGGGACTTAGCCCGGCTATAT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
169114106 AACTCTCAAT
Statistics
Matches: 296, Mismatches: 16, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
39 50 0.17
40 246 0.83
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
Found at i:169115441 original size:37 final size:37
Alignment explanation
Indices: 169115377--169115522 Score: 202
Period size: 37 Copynumber: 3.9 Consensus size: 37
169115367 AGCTCAGATG
* * * * *
169115377 AAATCTCCACACGAAGTTATCGAGTCTTACCTGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
169115414 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGATA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
169115451 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
169115488 TAATCTCCACACGTAGTCATCAGATCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
169115523 ATATGTTTCC
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:169115696 original size:22 final size:22
Alignment explanation
Indices: 169115670--169115793 Score: 58
Period size: 23 Copynumber: 5.4 Consensus size: 22
169115660 TTCCACGTTC
169115670 ATCACATTGGCCATTCTACCTT
1 ATCACATTGGCCATTCTACCTT
* *
169115692 ATCACATATATG-CATGT-TCACATT
1 ATCACAT-T-GGCCAT-TCT-ACCTT
**
169115716 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTACCTT
* *
169115739 ATCACATATTTG-CATGT-TCACATT
1 ATCAC--ATTGGCCAT-TCT-ACCTT
**
169115763 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTACCTT
169115786 ATCACATT
1 ATCACATT
169115794 CATCACATTG
Statistics
Matches: 74, Mismatches: 14, Indels: 28
0.64 0.12 0.24
Matches are distributed among these distances:
22 20 0.27
23 21 0.28
24 21 0.28
25 12 0.16
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.35
Consensus pattern (22 bp):
ATCACATTGGCCATTCTACCTT
Found at i:169115698 original size:47 final size:47
Alignment explanation
Indices: 169115667--169115792 Score: 225
Period size: 47 Copynumber: 2.7 Consensus size: 47
169115657 CACTTCCACG
**
169115667 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
169115714 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
169115761 TTCATCACATTGGCCATTCGGCCTTATCACAT
1 TTCATCACATTGGCCATTCGGCCTTATCACAT
169115793 TCATCACATT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 76 1.00
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.36
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:169115792 original size:78 final size:78
Alignment explanation
Indices: 169115709--169115870 Score: 297
Period size: 78 Copynumber: 2.1 Consensus size: 78
169115699 ATATGCATGT
* *
169115709 TCACATTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACATTCATCACATTGG
1 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGG
169115774 CCATTCGGCCTTA
66 CCATTCGGCCTTA
169115787 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGG
1 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGG
*
169115852 CCATTTGGCCTTA
66 CCATTCGGCCTTA
169115865 TCACAT
1 TCACAT
169115871 ATTTGCATGT
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 81 1.00
ACGTcount: A:0.24, C:0.30, G:0.12, T:0.34
Consensus pattern (78 bp):
TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGG
CCATTCGGCCTTA
Found at i:169115838 original size:47 final size:47
Alignment explanation
Indices: 169115787--169115934 Score: 269
Period size: 47 Copynumber: 3.1 Consensus size: 47
169115777 TTCGGCCTTA
169115787 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGT
1 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGT
* * *
169115834 TCACATTCATCACATTGGCCATTTGGCCTTATCACATATTTGCATGT
1 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGT
169115881 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGT
1 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGT
169115928 TCACATT
1 TCACATT
169115935 TATCTCATAG
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 95 1.00
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGT
Found at i:169115840 original size:38 final size:31
Alignment explanation
Indices: 169115756--169115822 Score: 134
Period size: 31 Copynumber: 2.2 Consensus size: 31
169115746 ATTTGCATGT
169115756 TCACATTCATCACATTGGCCATTCGGCCTTA
1 TCACATTCATCACATTGGCCATTCGGCCTTA
169115787 TCACATTCATCACATTGGCCATTCGGCCTTA
1 TCACATTCATCACATTGGCCATTCGGCCTTA
169115818 TCACA
1 TCACA
169115823 CATATGCATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.24, C:0.33, G:0.12, T:0.31
Consensus pattern (31 bp):
TCACATTCATCACATTGGCCATTCGGCCTTA
Found at i:169115856 original size:125 final size:125
Alignment explanation
Indices: 169115667--169115916 Score: 464
Period size: 125 Copynumber: 2.0 Consensus size: 125
169115657 CACTTCCACG
* *
169115667 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATT
169115732 CGGCCTTATCACATATTTGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
66 CGGCCTTATCACATATTTGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
*
169115792 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATT
*
169115857 TGGCCTTATCACATATTTGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
66 CGGCCTTATCACATATTTGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
169115917 CATATGCATG
Statistics
Matches: 121, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
125 121 1.00
ACGTcount: A:0.24, C:0.29, G:0.12, T:0.35
Consensus pattern (125 bp):
TTCATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATT
CGGCCTTATCACATATTTGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
Found at i:169115869 original size:22 final size:22
Alignment explanation
Indices: 169115842--169115916 Score: 62
Period size: 24 Copynumber: 3.3 Consensus size: 22
169115832 GTTCACATTC
169115842 ATCACATTGGCCATTTGGCCTT
1 ATCACATTGGCCATTTGGCCTT
* ** *
169115864 ATCACATATTTG-CATGTTCACATT
1 ATCAC--ATTGGCCAT-TTGGCCTT
*
169115888 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTTGGCCTT
169115911 ATCACA
1 ATCACA
169115917 CATATGCATG
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
22 11 0.28
23 11 0.28
24 12 0.31
25 5 0.13
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.35
Consensus pattern (22 bp):
ATCACATTGGCCATTTGGCCTT
Found at i:169117630 original size:29 final size:29
Alignment explanation
Indices: 169117590--169117692 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
169117580 GTTGAGAGAT
*
169117590 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
169117619 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
169117648 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
169117677 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
169117693 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:169125661 original size:29 final size:29
Alignment explanation
Indices: 169125621--169125723 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
169125611 GTTGAGAGAT
*
169125621 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
169125650 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
169125679 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
169125708 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
169125724 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:169127943 original size:143 final size:145
Alignment explanation
Indices: 169127683--169127949 Score: 475
Period size: 143 Copynumber: 1.9 Consensus size: 145
169127673 GCAAAGACCA
*
169127683 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTCACTATGGCACTATGTGTG
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTCACTATGGCACTATGTGTG
*
169127748 CGATTCACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACT
66 CGATTCACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTATGGCACT
169127813 ATGTGTGCGATTCAC
131 ATGTGTGCGATTCAC
169127828 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGA-TT-ACTATGGCACTATGTGTG
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTCACTATGGCACTATGTGTG
* * *
169127891 CGATTTACTATGGCACTATGTGTGCGATTTGCTATAGCACTATGTGTGCGATTTGCTAT
66 CGATTCACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTAT
169127950 AGTCACATTC
Statistics
Matches: 117, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
143 73 0.62
144 2 0.02
145 42 0.36
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (145 bp):
TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTCACTATGGCACTATGTGTG
CGATTCACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTATGGCACT
ATGTGTGCGATTCAC
Found at i:169127951 original size:24 final size:24
Alignment explanation
Indices: 169127683--169127949 Score: 464
Period size: 24 Copynumber: 11.1 Consensus size: 24
169127673 GCAAAGACCA
169127683 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
169127707 TATGGCACTATGTGTGCGATTTCAC
1 TATGGCACTATGTGTGCGATTT-AC
*
169127732 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
169127756 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
169127780 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
169127804 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
169127828 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
169127852 TATGGCACTATGTGTGCGA-TTAC
1 TATGGCACTATGTGTGCGATTTAC
169127875 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
169127899 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
169127923 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
169127947 TAT
1 TAT
169127950 AGTCACATTC
Statistics
Matches: 235, Mismatches: 6, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
23 22 0.09
24 190 0.81
25 23 0.10
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:169134865 original size:40 final size:39
Alignment explanation
Indices: 169134700--169134883 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
169134690 AAATTGAATG
* * *
169134700 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
169134740 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
169134780 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
169134820 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
169134859 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
169134884 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:169134908 original size:80 final size:81
Alignment explanation
Indices: 169134740--169134928 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
169134730 GCTGGAAATT
* * * *
169134740 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
169134805 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
169134821 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
169134884 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
169134900 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
169134929 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:169142982 original size:40 final size:39
Alignment explanation
Indices: 169142817--169143000 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
169142807 AAATTGAATG
* * *
169142817 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
169142857 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
169142897 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
169142937 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
169142976 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
169143001 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:169143025 original size:80 final size:81
Alignment explanation
Indices: 169142857--169143045 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
169142847 GCTGGAAATT
* * * *
169142857 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
169142922 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
169142938 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
169143001 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
169143017 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
169143046 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:169156720 original size:18 final size:18
Alignment explanation
Indices: 169156697--169156744 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
169156687 AAAATGTGAG
169156697 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
169156715 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
*
169156733 AAACGATGTTCA
1 AAATGATGTTCA
169156745 AATTGATGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:169159856 original size:26 final size:26
Alignment explanation
Indices: 169159825--169159932 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
169159815 TGAAATACCC
169159825 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
169159851 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
169159877 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
169159903 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
169159929 ATCA
1 ATCA
169159933 ATTTGTACCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:169165190 original size:80 final size:80
Alignment explanation
Indices: 169165106--169165254 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
169165096 TATGGTAACC
* * * *
169165106 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
169165170 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
169165186 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
169165251 CCGG
66 CCGG
169165255 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Done.