Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 547 of 770
Found at i:170090579 original size:68 final size:67
Alignment explanation
Indices: 170090507--170090656 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
170090497 CATCATGTGT
* * * *
170090507 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
170090569 ATGTAG
62 ATGTAG
** * *
170090575 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
170090640 AG
66 AG
170090642 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
170090657 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:170090612 original size:64 final size:64
Alignment explanation
Indices: 170090531--170090714 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
170090521 AGACATTATG
* *
170090531 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
170090595 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
170090660 AA
63 AA
* * * *
170090662 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
170090715 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:170090872 original size:20 final size:20
Alignment explanation
Indices: 170090847--170090890 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
170090837 ACTTGGTTAT
170090847 GTGAATGATGTGTTCATTAA
1 GTGAATGATGTGTTCATTAA
170090867 GTGAATGATGTGTTCATTAA
1 GTGAATGATGTGTTCATTAA
170090887 GTGA
1 GTGA
170090891 CCAGGATGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.30, C:0.05, G:0.27, T:0.39
Consensus pattern (20 bp):
GTGAATGATGTGTTCATTAA
Found at i:170095024 original size:68 final size:67
Alignment explanation
Indices: 170094952--170095101 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
170094942 CATCATGTGT
* * * *
170094952 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
170095014 ATGTAG
62 ATGTAG
** * *
170095020 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
170095085 AG
66 AG
170095087 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
170095102 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:170095057 original size:64 final size:64
Alignment explanation
Indices: 170094976--170095159 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
170094966 AGACATTATG
* *
170094976 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
170095040 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
170095105 AA
63 AA
* * * *
170095107 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
170095160 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:170099465 original size:68 final size:67
Alignment explanation
Indices: 170099393--170099542 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
170099383 CATCATGTGT
* * * *
170099393 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
170099455 ATGTAG
62 ATGTAG
** * *
170099461 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
170099526 AG
66 AG
170099528 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
170099543 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:170099498 original size:64 final size:64
Alignment explanation
Indices: 170099417--170099600 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
170099407 AGACATTATG
* *
170099417 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
170099481 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
170099546 AA
63 AA
* * * *
170099548 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
170099601 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:170107481 original size:46 final size:46
Alignment explanation
Indices: 170107431--170107606 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
170107421 TGGTTGAGCA
170107431 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
170107477 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
170107522 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
170107570 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
170107607 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:170107587 original size:93 final size:93
Alignment explanation
Indices: 170107428--170107599 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
170107418 GGATGGTTGA
* *
170107428 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
170107493 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
170107521 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
170107586 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
170107600 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:170115056 original size:46 final size:46
Alignment explanation
Indices: 170115006--170115181 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
170114996 TGGTTGAGCA
170115006 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
170115052 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
170115097 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
170115145 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
170115182 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:170115162 original size:93 final size:93
Alignment explanation
Indices: 170115003--170115174 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
170114993 GGATGGTTGA
* *
170115003 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
170115068 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
170115096 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
170115161 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
170115175 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:170119626 original size:93 final size:93
Alignment explanation
Indices: 170119514--170119685 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
170119504 GCCCATAAGT
* *
170119514 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
170119579 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
170119607 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
170119672 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
170119686 AAATATCCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:170119681 original size:46 final size:46
Alignment explanation
Indices: 170119506--170119681 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
170119496 TGTAACCCGC
* * *
170119506 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
170119552 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
170119602 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
170119645 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
170119682 TGCCAAATAT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:170122105 original size:30 final size:30
Alignment explanation
Indices: 170122061--170122149 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
170122051 CAAAGATAAC
170122061 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
170122090 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
170122120 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
170122150 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:170122109 original size:15 final size:15
Alignment explanation
Indices: 170122061--170122140 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
170122051 CAAAGATAAC
*
170122061 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
170122075 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
170122090 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
170122105 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
170122120 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
170122135 AAGAAA
1 AAGAAA
170122141 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:170122149 original size:15 final size:15
Alignment explanation
Indices: 170122072--170122149 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
170122062 AGAAAACCGA
170122072 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
170122087 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
170122101 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
170122116 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
170122132 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
170122147 ATA
1 ATA
170122150 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:170125175 original size:93 final size:93
Alignment explanation
Indices: 170125063--170125234 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
170125053 GCCCATAAGT
* *
170125063 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
170125128 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
170125156 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
170125221 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
170125235 AAATATCCAG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:170125230 original size:46 final size:46
Alignment explanation
Indices: 170125055--170125230 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
170125045 TGTAACCCGC
* * *
170125055 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
170125101 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
170125151 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
170125194 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
170125231 TGCCAAATAT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:170130139 original size:38 final size:38
Alignment explanation
Indices: 170130097--170130185 Score: 90
Period size: 38 Copynumber: 2.3 Consensus size: 38
170130087 GCTAAACTTA
* *
170130097 AATAACACTAGCACTAGGCCTACTAGGCACTAAGCCTG
1 AATAACACTAGCACGAAGCCTACTAGGCACTAAGCCTG
* * * * *
170130135 AATAACA-TCGGCACGAAGCTTGCTAGGCATTAAGCTTG
1 AATAACACT-AGCACGAAGCCTACTAGGCACTAAGCCTG
*
170130173 AATAACACCAGCA
1 AATAACACTAGCA
170130186 TTAAGCTTGA
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
37 1 0.03
38 39 0.98
ACGTcount: A:0.36, C:0.26, G:0.19, T:0.19
Consensus pattern (38 bp):
AATAACACTAGCACGAAGCCTACTAGGCACTAAGCCTG
Found at i:170130189 original size:22 final size:22
Alignment explanation
Indices: 170130161--170130202 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
170130151 AGCTTGCTAG
170130161 GCATTAAGCTTGAATAACACCA
1 GCATTAAGCTTGAATAACACCA
170130183 GCATTAAGCTTGAATAACAC
1 GCATTAAGCTTGAATAACAC
170130203 TGGCACAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.24
Consensus pattern (22 bp):
GCATTAAGCTTGAATAACACCA
Found at i:170130192 original size:38 final size:38
Alignment explanation
Indices: 170130119--170130194 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
170130109 ACTAGGCCTA
* *
170130119 CTAGGCACTAAGCCTGAATAACATCGGCACGAAGCTTG
1 CTAGGCACTAAGCCTGAATAACACCAGCACGAAGCTTG
* * **
170130157 CTAGGCATTAAGCTTGAATAACACCAGCATTAAGCTTG
1 CTAGGCACTAAGCCTGAATAACACCAGCACGAAGCTTG
170130195 AATAACACTG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (38 bp):
CTAGGCACTAAGCCTGAATAACACCAGCACGAAGCTTG
Found at i:170130213 original size:22 final size:22
Alignment explanation
Indices: 170130166--170130213 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
170130156 GCTAGGCATT
**
170130166 AAGCTTGAATAACACCAGCATT
1 AAGCTTGAATAACACCAGCACA
**
170130188 AAGCTTGAATAACACTGGCACA
1 AAGCTTGAATAACACCAGCACA
170130210 AAGC
1 AAGC
170130214 CTGCTAGGCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.42, C:0.23, G:0.17, T:0.19
Consensus pattern (22 bp):
AAGCTTGAATAACACCAGCACA
Found at i:170130220 original size:60 final size:60
Alignment explanation
Indices: 170130127--170130242 Score: 180
Period size: 60 Copynumber: 1.9 Consensus size: 60
170130117 TACTAGGCAC
* * *
170130127 TAAGCCTGAATAACATCGGCACGAAGCTTGCTAGGCATTAAGCTTGAATAACACCAGCAT
1 TAAGCCTGAATAACATCGGCACAAAGCCTGCTAGGCATTAAGCCTGAATAACACCAGCAT
*
170130187 TAAGCTTGAATAACA-CTGGCACAAAGCCTGCTAGGCATTAAGCCTGAATAACACCA
1 TAAGCCTGAATAACATC-GGCACAAAGCCTGCTAGGCATTAAGCCTGAATAACACCA
170130243 CCACGAATCC
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
59 1 0.02
60 50 0.98
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (60 bp):
TAAGCCTGAATAACATCGGCACAAAGCCTGCTAGGCATTAAGCCTGAATAACACCAGCAT
Found at i:170130225 original size:38 final size:38
Alignment explanation
Indices: 170130183--170130279 Score: 122
Period size: 38 Copynumber: 2.6 Consensus size: 38
170130173 AATAACACCA
*** *
170130183 GCATTAAGCTTGAATAACACTGGCACAAAGCCTGCTAG
1 GCATTAAGCTTGAATAACACCACCACAAAGCCAGCTAG
* * *
170130221 GCATTAAGCCTGAATAACACCACCACGAATCCAGCTAG
1 GCATTAAGCTTGAATAACACCACCACAAAGCCAGCTAG
*
170130259 GCACTAAGCTTGAATAACACC
1 GCATTAAGCTTGAATAACACC
170130280 TAATTCGAAT
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.36, C:0.28, G:0.18, T:0.19
Consensus pattern (38 bp):
GCATTAAGCTTGAATAACACCACCACAAAGCCAGCTAG
Found at i:170130267 original size:98 final size:98
Alignment explanation
Indices: 170130097--170130279 Score: 258
Period size: 98 Copynumber: 1.9 Consensus size: 98
170130087 GCTAAACTTA
* * * ** **
170130097 AATAACACTAGCACTAGGCCTACTAGGCACTAAGCCTGAATAACATCGGCACGAAGCTTGCTAGG
1 AATAACACTAGCACAAAGCCTACTAGGCACTAAGCCTGAATAACACCACCACGAAGCCAGCTAGG
*
170130162 CATTAAGCTTGAATAACACCAGCATTAAGCTTG
66 CACTAAGCTTGAATAACACCAGCATTAAGCTTG
* * * *
170130195 AATAACACTGGCACAAAGCCTGCTAGGCATTAAGCCTGAATAACACCACCACGAATCCAGCTAGG
1 AATAACACTAGCACAAAGCCTACTAGGCACTAAGCCTGAATAACACCACCACGAAGCCAGCTAGG
170130260 CACTAAGCTTGAATAACACC
66 CACTAAGCTTGAATAACACC
170130280 TAATTCGAAT
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
98 73 1.00
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.19
Consensus pattern (98 bp):
AATAACACTAGCACAAAGCCTACTAGGCACTAAGCCTGAATAACACCACCACGAAGCCAGCTAGG
CACTAAGCTTGAATAACACCAGCATTAAGCTTG
Found at i:170133319 original size:13 final size:13
Alignment explanation
Indices: 170133297--170133329 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
170133287 AAGGGTGTGT
170133297 TTAT-TAAACTAA
1 TTATCTAAACTAA
170133309 TTATCTAAACTAA
1 TTATCTAAACTAA
*
170133322 TTAACTAA
1 TTATCTAA
170133330 TTAATTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:170136242 original size:5 final size:5
Alignment explanation
Indices: 170136232--170136316 Score: 57
Period size: 6 Copynumber: 15.6 Consensus size: 5
170136222 TATGTCTTTC
* *
170136232 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT CAAAAGG AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAA-T AAAAT
170136280 AAAAAT AAAAAT AAAAT AAAAT AAAAAT AAGAAT AAA
1 -AAAAT -AAAAT AAAAT AAAAT -AAAAT AA-AAT AAA
170136317 TAATTAAAAA
Statistics
Matches: 66, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
3 3 0.05
5 21 0.32
6 42 0.64
ACGTcount: A:0.75, C:0.01, G:0.06, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:170136261 original size:6 final size:6
Alignment explanation
Indices: 170136252--170136326 Score: 73
Period size: 6 Copynumber: 12.5 Consensus size: 6
170136242 AATAAAATTG
* * **
170136252 AAATGA AAATAA AAATCA AAAGGA AAATAA AAATAA AAAT-A AAAT-A
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
*
170136298 AAATAA AAATAA GAATAA ATAATTAA AAA
1 AAATAA AAATAA AAATAA A-AA-TAA AAA
170136327 AATAGGAGGA
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
5 10 0.17
6 40 0.69
7 4 0.07
8 4 0.07
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:170136267 original size:12 final size:11
Alignment explanation
Indices: 170136232--170136316 Score: 64
Period size: 12 Copynumber: 7.3 Consensus size: 11
170136222 TATGTCTTTC
170136232 AAAATAAAATAAT
1 AAAAT-AAA-AAT
**
170136245 AAAATTGAAAT
1 AAAATAAAAAT
170136256 GAAAATAAAAAT
1 -AAAATAAAAAT
**
170136268 CAAAAGGAAAAT
1 -AAAATAAAAAT
170136280 AAAAATAAAAAT
1 -AAAATAAAAAT
170136292 AAAAT-AAAAT
1 AAAATAAAAAT
*
170136302 AAAAATAAGAAT
1 -AAAATAAAAAT
170136314 AAA
1 AAA
170136317 TAATTAAAAA
Statistics
Matches: 58, Mismatches: 11, Indels: 8
0.75 0.14 0.10
Matches are distributed among these distances:
10 5 0.09
11 16 0.28
12 32 0.55
13 5 0.09
ACGTcount: A:0.75, C:0.01, G:0.06, T:0.18
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:170136277 original size:18 final size:17
Alignment explanation
Indices: 170136242--170136326 Score: 73
Period size: 17 Copynumber: 4.8 Consensus size: 17
170136232 AAAATAAAAT
* * *
170136242 AATAAAATTGAAATGAA
1 AATAAAAATAAAAAGAA
*
170136259 AATAAAAATCAAAAGGAA
1 AATAAAAAT-AAAAAGAA
*
170136277 AATAAAAATAAAAATAA
1 AATAAAAATAAAAAGAA
*
170136294 AAT-AAAATAAAAATAA
1 AATAAAAATAAAAAGAA
170136310 GAATAAATAATTAAAAA
1 -AATAAA-AA-TAAAAA
170136327 AATAGGAGGA
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
16 13 0.22
17 20 0.34
18 17 0.29
19 2 0.03
20 6 0.10
ACGTcount: A:0.74, C:0.01, G:0.06, T:0.19
Consensus pattern (17 bp):
AATAAAAATAAAAAGAA
Found at i:170136330 original size:22 final size:22
Alignment explanation
Indices: 170136232--170136316 Score: 89
Period size: 24 Copynumber: 3.6 Consensus size: 22
170136222 TATGTCTTTC
* *
170136232 AAAATAAAATAATAAAATTGAAATG
1 AAAAT-AAA-AATAAAA-TAAAATA
*
170136257 AAAATAAAAATCAAAAGGAAAATA
1 AAAATAAAAAT-AAAA-TAAAATA
170136281 AAAATAAAAATAAAATAAAATA
1 AAAATAAAAATAAAATAAAATA
*
170136303 AAAATAAGAATAAA
1 AAAATAAAAATAAA
170136317 TAATTAAAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
22 19 0.36
23 7 0.13
24 22 0.42
25 5 0.09
ACGTcount: A:0.75, C:0.01, G:0.06, T:0.18
Consensus pattern (22 bp):
AAAATAAAAATAAAATAAAATA
Found at i:170141642 original size:13 final size:13
Alignment explanation
Indices: 170141620--170141652 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
170141610 AAGGGTTTGT
170141620 TTAT-TAAACTAA
1 TTATCTAAACTAA
170141632 TTATCTAAACTAA
1 TTATCTAAACTAA
*
170141645 TTAACTAA
1 TTATCTAA
170141653 TTTAAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:170146778 original size:30 final size:30
Alignment explanation
Indices: 170146723--170146853 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
170146713 ATAGTGAATC
*
170146723 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
170146752 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
170146782 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
170146810 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
170146840 CGCACACTTAGTGC
1 CGCACACTTAGTGC
170146854 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:170146833 original size:58 final size:58
Alignment explanation
Indices: 170146722--170146853 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
170146712 TATAGTGAAT
* * * * *
170146722 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
170146781 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
170146839 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
170146854 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:170154733 original size:30 final size:30
Alignment explanation
Indices: 170154678--170154808 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
170154668 ATAGTGAATC
*
170154678 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
170154707 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
170154737 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
170154765 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
170154795 CGCACACTTAGTGC
1 CGCACACTTAGTGC
170154809 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:170154788 original size:58 final size:58
Alignment explanation
Indices: 170154677--170154808 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
170154667 TATAGTGAAT
* * * * *
170154677 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
170154736 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
170154794 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
170154809 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:170162303 original size:80 final size:80
Alignment explanation
Indices: 170162219--170162367 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
170162209 TATGGTAACC
* * * *
170162219 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
170162283 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
170162299 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
170162364 CCGG
66 CCGG
170162368 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:170162309 original size:40 final size:38
Alignment explanation
Indices: 170162260--170162367 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
170162250 ATCACGATTT
*
170162260 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
170162300 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
170162340 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
170162368 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:170165806 original size:40 final size:39
Alignment explanation
Indices: 170165761--170165890 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
170165751 CGGAATATAA
170165761 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
170165801 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
170165841 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
170165881 CCGGATATAA
1 CCGGATATAA
170165891 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:170165905 original size:40 final size:40
Alignment explanation
Indices: 170165777--170165928 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
170165767 ATAACCATGT
* * *
170165777 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
170165817 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
170165857 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
170165897 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
170165929 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:170165911 original size:80 final size:80
Alignment explanation
Indices: 170165777--170165926 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
170165767 ATAACCATGT
*
170165777 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
170165841 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
170165857 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
170165920 CCCGGAT
64 CCCGGAT
170165927 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:170170817 original size:40 final size:40
Alignment explanation
Indices: 170170772--170170884 Score: 181
Period size: 40 Copynumber: 2.8 Consensus size: 40
170170762 TTACGAGTAC
* *
170170772 CTGTCAACTTGTGCAAGCAGCCCAAGTAGTTACGTCCTGA
1 CTGTCAGCTTGTGTAAGCAGCCCAAGTAGTTACGTCCTGA
*
170170812 CTGTCAGCTTGTGTAAGCAGCCCAAGTAGTTATGTCCTGA
1 CTGTCAGCTTGTGTAAGCAGCCCAAGTAGTTACGTCCTGA
* *
170170852 CTGTCAGCTTGTGTGAGCAGCCCATGTAGTTAC
1 CTGTCAGCTTGTGTAAGCAGCCCAAGTAGTTAC
170170885 ATCTTGTGAG
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.28
Consensus pattern (40 bp):
CTGTCAGCTTGTGTAAGCAGCCCAAGTAGTTACGTCCTGA
Found at i:170172720 original size:3 final size:3
Alignment explanation
Indices: 170172712--170172750 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
170172702 TTTAATATTA
170172712 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
170172751 TATTATTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:170173394 original size:17 final size:18
Alignment explanation
Indices: 170173372--170173407 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
170173362 TAGATGAGTT
170173372 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
170173389 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
170173407 A
1 A
170173408 TAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:170178232 original size:40 final size:40
Alignment explanation
Indices: 170178124--170178373 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
170178114 CGGGATTTAA
* * * * *
170178124 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
170178164 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
170178204 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
170178244 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
170178284 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
170178324 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
170178364 CCGGATATAT
1 CCGGATATAT
170178374 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:170186408 original size:40 final size:40
Alignment explanation
Indices: 170186300--170186509 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
170186290 CGGGATTTAA
* * * * *
170186300 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
170186340 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
170186380 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
170186420 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
170186460 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
170186500 CCGGATATAT
1 CCGGATATAT
170186510 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:170189963 original size:2 final size:2
Alignment explanation
Indices: 170189956--170189981 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
170189946 TTGGTGAAGG
170189956 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
170189982 TATTGATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:170191648 original size:33 final size:33
Alignment explanation
Indices: 170191606--170191681 Score: 115
Period size: 29 Copynumber: 2.4 Consensus size: 33
170191596 TGACGAGATA
*
170191606 GGCACTAAGTGTGCGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCATGCTGGAAATATAT
170191639 GGCACTAA--GT--GTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCATGCTGGAAATATAT
170191668 GGCACTAAGTGTGC
1 GGCACTAAGTGTGC
170191682 ATGCTGGAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
29 26 0.68
31 4 0.11
33 8 0.21
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (33 bp):
GGCACTAAGTGTGCGTGCATGCTGGAAATATAT
Found at i:170191662 original size:29 final size:29
Alignment explanation
Indices: 170191620--170191691 Score: 135
Period size: 29 Copynumber: 2.5 Consensus size: 29
170191610 CTAAGTGTGC
*
170191620 GTGCGTGCTGGAAATATATGGCACTAAGT
1 GTGCATGCTGGAAATATATGGCACTAAGT
170191649 GTGCATGCTGGAAATATATGGCACTAAGT
1 GTGCATGCTGGAAATATATGGCACTAAGT
170191678 GTGCATGCTGGAAA
1 GTGCATGCTGGAAA
170191692 AAAAAATAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (29 bp):
GTGCATGCTGGAAATATATGGCACTAAGT
Found at i:170199547 original size:29 final size:29
Alignment explanation
Indices: 170199514--170199595 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
170199504 TGACGAGATA
*
170199514 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
170199543 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
170199572 GGCACTAAGTGTGCATGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAA
170199596 AAAAAAAATA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:170202132 original size:39 final size:39
Alignment explanation
Indices: 170202087--170202207 Score: 206
Period size: 39 Copynumber: 3.1 Consensus size: 39
170202077 AATAAGCACA
* *
170202087 CTGGAAATGTATCCGGGCTAAAGACCTGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
170202126 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
170202165 CTAGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
170202204 CTGG
1 CTGG
170202208 TAACATAATT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:170204914 original size:68 final size:70
Alignment explanation
Indices: 170204842--170205039 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
170204832 ACACCCTGTA
* * * *
170204842 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
170204904 ATAAAT
65 ATAAAT
*
170204910 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
170204975 ATAAAT
65 ATAAAT
*
170204981 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
170205040 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:170204953 original size:41 final size:41
Alignment explanation
Indices: 170204908--170205025 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
170204898 TGAAAGATAA
170204908 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
170204949 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
170204979 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
170205020 ATGTAG
1 ATGTAG
170205026 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:170204965 original size:71 final size:71
Alignment explanation
Indices: 170204876--170205039 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
170204866 GAGATGTATC
170204876 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
170204941 AGGACA
66 AGGACA
170204947 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
170205012 AGGACA
66 AGGACA
170205018 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
170205040 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:170212476 original size:68 final size:70
Alignment explanation
Indices: 170212404--170212601 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
170212394 ACACCCTGTA
* * * *
170212404 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
170212466 ATAAAT
65 ATAAAT
*
170212472 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
170212537 ATAAAT
65 ATAAAT
*
170212543 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
170212602 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:170212515 original size:41 final size:41
Alignment explanation
Indices: 170212470--170212587 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
170212460 TGAAAGATAA
170212470 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
170212511 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
170212541 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
170212582 ATGTAG
1 ATGTAG
170212588 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:170212527 original size:71 final size:71
Alignment explanation
Indices: 170212438--170212601 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
170212428 GAGATGTATC
170212438 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
170212503 AGGACA
66 AGGACA
170212509 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
170212574 AGGACA
66 AGGACA
170212580 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
170212602 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:170221181 original size:21 final size:20
Alignment explanation
Indices: 170221141--170221181 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
170221131 GTAAACATGA
*
170221141 AATTTGTTTCAAAAAGGGTT
1 AATTTGTTTCAAAAAAGGTT
170221161 AATTTGTTTCAAAAAAAGGTT
1 AATTTGTTTC-AAAAAAGGTT
170221182 TTGAAGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.39, C:0.05, G:0.17, T:0.39
Consensus pattern (20 bp):
AATTTGTTTCAAAAAAGGTT
Found at i:170223996 original size:71 final size:71
Alignment explanation
Indices: 170223912--170224075 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
170223902 CGATTTGTCT
170223912 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
170223977 CTTTCA
66 CTTTCA
* *
170223983 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
170224048 CTTTCA
66 CTTTCA
170224054 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
170224076 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:170224113 original size:71 final size:70
Alignment explanation
Indices: 170223912--170224109 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
170223902 CGATTTGTCT
* * * * *
170223912 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
170223977 CTTTCA
65 CTTTCA
* * * *
170223983 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
170224048 CTTTCA
65 CTTTCA
* *
170224054 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
170224110 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:170231058 original size:71 final size:71
Alignment explanation
Indices: 170230972--170231135 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
170230962 CGATTTGTCT
170230972 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
170231037 CTTTCA
66 CTTTCA
170231043 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
170231108 CTTTCA
66 CTTTCA
170231114 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
170231136 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:170231173 original size:71 final size:70
Alignment explanation
Indices: 170230972--170231169 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
170230962 CGATTTGTCT
* * * *
170230972 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
170231037 CTTTCA
65 CTTTCA
* * * *
170231043 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
170231108 CTTTCA
65 CTTTCA
* *
170231114 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
170231170 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:170234423 original size:30 final size:30
Alignment explanation
Indices: 170234387--170234487 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
170234377 GACAAGATTG
* * *
170234387 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
170234417 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
170234445 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
170234474 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
170234488 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:170234499 original size:29 final size:28
Alignment explanation
Indices: 170234416--170234491 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
170234406 AAAATTGTAC
* *
170234416 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
170234444 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
170234473 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
170234492 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:170238674 original size:80 final size:80
Alignment explanation
Indices: 170238590--170238738 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
170238580 TATGGTAACC
* * * *
170238590 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
170238654 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
170238670 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
170238735 CCGG
66 CCGG
170238739 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:170238680 original size:40 final size:38
Alignment explanation
Indices: 170238631--170238738 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
170238621 ATCACGATTT
*
170238631 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
170238671 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
170238711 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
170238739 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:170247134 original size:13 final size:15
Alignment explanation
Indices: 170247108--170247147 Score: 66
Period size: 13 Copynumber: 2.8 Consensus size: 15
170247098 CCTTAATTTA
170247108 TTAATATTTATTAAT
1 TTAATATTTATTAAT
170247123 TTAAT-TTT-TTAAT
1 TTAATATTTATTAAT
170247136 TTAATATTTATT
1 TTAATATTTATT
170247148 TAATAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.43
14 6 0.26
15 7 0.30
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTAATATTTATTAAT
Found at i:170249930 original size:14 final size:14
Alignment explanation
Indices: 170249911--170249939 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
170249901 ACAGATGGAT
170249911 TCGTATAATTCTTA
1 TCGTATAATTCTTA
170249925 TCGTATAATTCTTA
1 TCGTATAATTCTTA
170249939 T
1 T
170249940 ATATATTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52
Consensus pattern (14 bp):
TCGTATAATTCTTA
Found at i:170254172 original size:20 final size:21
Alignment explanation
Indices: 170254106--170254174 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
170254096 TCACTTCGTT
170254106 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
170254127 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
* * *
170254148 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
170254169 -CTTTTT
1 TCTTTTT
170254175 TCTTTGTGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.12, C:0.25, G:0.09, T:0.55
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:170256572 original size:18 final size:18
Alignment explanation
Indices: 170256539--170256632 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
170256529 AAGGTTTTCT
170256539 TATTGATGATA-T--CGA
1 TATTGATGATAGTGACGA
170256554 TATTGATGATAGTGACGA
1 TATTGATGATAGTGACGA
*
170256572 TATTGATGCTAGTGACGA
1 TATTGATGATAGTGACGA
* *
170256590 TATTGATGCTAGTGACGC
1 TATTGATGATAGTGACGA
*
170256608 TATTGATGATAGTGACGC
1 TATTGATGATAGTGACGA
170256626 TATTGAT
1 TATTGAT
170256633 CGTGACCTTG
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.36
Consensus pattern (18 bp):
TATTGATGATAGTGACGA
Found at i:170264900 original size:14 final size:14
Alignment explanation
Indices: 170264881--170264908 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
170264871 TATATTAGTA
170264881 TTTTCTATTCTATT
1 TTTTCTATTCTATT
170264895 TTTTCTATTCTATT
1 TTTTCTATTCTATT
170264909 AGTATTAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTCTATTCTATT
Found at i:170264916 original size:6 final size:6
Alignment explanation
Indices: 170264905--170264983 Score: 66
Period size: 5 Copynumber: 14.2 Consensus size: 6
170264895 TTTTCTATTC
* *
170264905 TATTAG TATTAGAG TATTAG -ATTAG TATT-C TATT-C TATTAG TATTAG
1 TATTAG TATT--AG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
170264952 -ATTAG TATTAG --TTAG -ATTAG -ATTAG TATTAG T
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG T
170264984 TAGTGATCCC
Statistics
Matches: 64, Mismatches: 2, Indels: 14
0.80 0.03 0.17
Matches are distributed among these distances:
4 4 0.06
5 28 0.44
6 26 0.41
8 6 0.09
ACGTcount: A:0.33, C:0.03, G:0.16, T:0.48
Consensus pattern (6 bp):
TATTAG
Found at i:170264931 original size:11 final size:11
Alignment explanation
Indices: 170264906--170264987 Score: 50
Period size: 11 Copynumber: 7.5 Consensus size: 11
170264896 TTTCTATTCT
170264906 ATTAGTATTAG
1 ATTAGTATTAG
170264917 ---AGTATTAG
1 ATTAGTATTAG
**
170264925 ATTAGTATTCT
1 ATTAGTATTAG
*
170264936 ATT-CTATTAG
1 ATTAGTATTAG
170264946 TATTAG-ATTAG
1 -ATTAGTATTAG
170264957 TATTAGTTAGATTAG
1 -ATTAG-T--ATTAG
170264972 ATTAGTATTAG
1 ATTAGTATTAG
170264983 -TTAGT
1 ATTAGT
170264988 GATCCCGGCT
Statistics
Matches: 56, Mismatches: 6, Indels: 19
0.69 0.07 0.23
Matches are distributed among these distances:
8 8 0.14
10 9 0.16
11 28 0.50
13 1 0.02
14 5 0.09
15 5 0.09
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (11 bp):
ATTAGTATTAG
Found at i:170264972 original size:20 final size:21
Alignment explanation
Indices: 170264942--170264987 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
170264932 TTCTATTCTA
170264942 TTAGTATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
170264963 TTAG-ATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
170264983 TTAGT
1 TTAGT
170264988 GATCCCGGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.48
Consensus pattern (21 bp):
TTAGTATTAGATTAGTATTAG
Found at i:170273200 original size:32 final size:32
Alignment explanation
Indices: 170273159--170273220 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
170273149 CATCTATTTT
170273159 CATTGTTCAACTCTTTGACAACACGAAAAATC
1 CATTGTTCAACTCTTTGACAACACGAAAAATC
*
170273191 CATTGTTCAACTCTTTGACAACATGAAAAA
1 CATTGTTCAACTCTTTGACAACACGAAAAA
170273221 ACCAAAAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (32 bp):
CATTGTTCAACTCTTTGACAACACGAAAAATC
Found at i:170277365 original size:22 final size:22
Alignment explanation
Indices: 170277339--170277382 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
170277329 TTATCTCTTT
170277339 TGATTGAAAAGGAGCAATAAAA
1 TGATTGAAAAGGAGCAATAAAA
170277361 TGATTGAAAAGGAGCAATAAAA
1 TGATTGAAAAGGAGCAATAAAA
170277383 AAATCGAGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.55, C:0.05, G:0.23, T:0.18
Consensus pattern (22 bp):
TGATTGAAAAGGAGCAATAAAA
Found at i:170279639 original size:21 final size:21
Alignment explanation
Indices: 170279615--170279658 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
170279605 ACGACCTAAT
*
170279615 TAAATAGAAAGGATA-ATTAAA
1 TAAATA-AAAGGATACAATAAA
*
170279636 TAAATAAAATGATACAATAAA
1 TAAATAAAAGGATACAATAAA
170279657 TA
1 TA
170279659 CTAAAGATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.25
Consensus pattern (21 bp):
TAAATAAAAGGATACAATAAA
Found at i:170289672 original size:2 final size:2
Alignment explanation
Indices: 170289665--170289698 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
170289655 TTCGGTTATG
170289665 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
170289699 CATAAGTATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:170290183 original size:24 final size:24
Alignment explanation
Indices: 170290151--170290213 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
170290141 AATCTCAAAT
170290151 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
170290175 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
170290199 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
170290214 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:170292554 original size:40 final size:40
Alignment explanation
Indices: 170292509--170292638 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
170292499 CGGAATACAA
170292509 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
170292549 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
170292589 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
170292629 CCGGATATAA
1 CCGGATATAA
170292639 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:170292653 original size:40 final size:40
Alignment explanation
Indices: 170292509--170292672 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
170292499 CGGAATACAA
* **
170292509 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
170292549 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
170292589 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
170292629 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
170292669 CCGG
1 CCGG
170292673 TATCATTCAA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:170300601 original size:40 final size:40
Alignment explanation
Indices: 170300556--170300685 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
170300546 CGGAATACAA
170300556 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
170300596 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
170300636 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
170300676 CCGGATATAA
1 CCGGATATAA
170300686 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:170300700 original size:40 final size:40
Alignment explanation
Indices: 170300556--170300722 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
170300546 CGGAATACAA
* **
170300556 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
170300596 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
170300636 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
170300676 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
170300715 CCGGATAT
1 CCGGATAT
170300723 CATTCAATTT
Statistics
Matches: 104, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
39 15 0.14
40 89 0.86
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:170315631 original size:28 final size:28
Alignment explanation
Indices: 170315585--170315655 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
170315575 GACATCTTGT
* * *
170315585 ACTTCACCATTTTGTGGTGTAATCTCAC
1 ACTTCACCACTTCGCGGTGTAATCTCAC
* * *
170315613 ACTTCACCACTTCGCGGTGTCATTTCGC
1 ACTTCACCACTTCGCGGTGTAATCTCAC
*
170315641 AATTCACCACTTCGC
1 ACTTCACCACTTCGC
170315656 AATGTCGTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.20, C:0.32, G:0.14, T:0.34
Consensus pattern (28 bp):
ACTTCACCACTTCGCGGTGTAATCTCAC
Found at i:170315661 original size:28 final size:28
Alignment explanation
Indices: 170315615--170315674 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
170315605 AATCTCACAC
**
170315615 TTCACCACTTCGCGGTGTCATTTCGCAA
1 TTCACCACTTCGCAATGTCATTTCGCAA
*
170315643 TTCACCACTTCGCAATGTCGTTTCGCAA
1 TTCACCACTTCGCAATGTCATTTCGCAA
170315671 TTCA
1 TTCA
170315675 TCTCATAACT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.20, C:0.32, G:0.15, T:0.33
Consensus pattern (28 bp):
TTCACCACTTCGCAATGTCATTTCGCAA
Found at i:170317496 original size:24 final size:24
Alignment explanation
Indices: 170317464--170317526 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
170317454 AATCTCAAAT
170317464 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
170317488 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
170317512 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
170317527 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:170322297 original size:40 final size:40
Alignment explanation
Indices: 170322252--170322417 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
170322242 CGGAATATAA
170322252 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
** * * *
170322292 CCGGATCGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
170322332 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
170322372 CCGGATA-AATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
*
170322410 CCAGATAT
1 CCGGATAT
170322418 CATTCAATTT
Statistics
Matches: 102, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
38 11 0.11
39 19 0.19
40 72 0.71
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:170328554 original size:24 final size:24
Alignment explanation
Indices: 170328522--170328584 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
170328512 AATCTCAAAT
170328522 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
170328546 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
170328570 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
170328585 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:170334180 original size:29 final size:29
Alignment explanation
Indices: 170334145--170334218 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
170334135 GTTGTGAGAT
* *
170334145 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
170334174 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
170334203 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
170334219 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:170335704 original size:47 final size:47
Alignment explanation
Indices: 170335651--170335803 Score: 172
Period size: 47 Copynumber: 3.3 Consensus size: 47
170335641 CACGTTTAGC
*
170335651 TGAGTCTGAGTTCGTGAGATGTAACTAGGCATCTGAACTCGTTGAGT
1 TGAGTCTGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGT
* * * *
170335698 TGAGTCTGAGTTCACTTATGGATGCGAAC---G--TCCGAACTCATTGAGT
1 TGAGTCTGAGTTC-GTGA--GATG-TAACTAGGCATCCGAACTCGTTGAGT
* *
170335744 TGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCGTTGAGT
1 TGAGTCTGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGT
170335791 TGAGTCTGAGTTC
1 TGAGTCTGAGTTC
170335804 ACTTATGGAT
Statistics
Matches: 85, Mismatches: 12, Indels: 18
0.74 0.10 0.16
Matches are distributed among these distances:
42 3 0.04
43 4 0.05
45 3 0.04
46 26 0.31
47 39 0.46
48 3 0.04
50 4 0.05
51 3 0.04
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (47 bp):
TGAGTCTGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGT
Found at i:170335744 original size:46 final size:46
Alignment explanation
Indices: 170335685--170335857 Score: 160
Period size: 46 Copynumber: 3.7 Consensus size: 46
170335675 CTAGGCATCT
*
170335685 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCC
1 GAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCC
* * * *
170335731 GAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC---G--TCC
* *
170335778 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CC
1 GAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCC
* *
170335823 TGAGCTCATTGAGTTAAGTCTGAGTTCGA-TTATGG
1 -GAACTCATTGAGTTGAGTCTGAGTTC-ACTTATGG
170335858 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 5 0.05
46 54 0.52
47 27 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.31
Consensus pattern (46 bp):
GAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCC
Found at i:170335805 original size:93 final size:93
Alignment explanation
Indices: 170335651--170335850 Score: 339
Period size: 93 Copynumber: 2.2 Consensus size: 93
170335641 CACGTTTAGC
*
170335651 TGAGTCTGAGTTCGTGAGATGTAACTAGGCATCTGAACTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TGAGTCTGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTA
170335716 TGGATGCGAACGTCC-GAACTCATTGAGT
66 TGGATGCGAACG-CCTGAACTCATTGAGT
* *
170335744 TGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TGAGTCTGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTA
*
170335809 TGGATGCGAACGCCTGAGCTCATTGAGT
66 TGGATGCGAACGCCTGAACTCATTGAGT
*
170335837 TAAGTCTGAGTTCG
1 TGAGTCTGAGTTCG
170335851 ATTATGGGCG
Statistics
Matches: 100, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
92 2 0.02
93 98 0.98
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (93 bp):
TGAGTCTGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTA
TGGATGCGAACGCCTGAACTCATTGAGT
Found at i:170341805 original size:27 final size:27
Alignment explanation
Indices: 170341775--170341855 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
170341765 CCCGTATCTA
* * *
170341775 TAGGCTAGTATTATTGAAATACCCTTG
1 TAGGGTAGAATTACTGAAATACCCTTG
* * *
170341802 TAGGGTAGAACTACTGAAATACCCCTA
1 TAGGGTAGAATTACTGAAATACCCTTG
170341829 TAGGGTAGAATTACTGAAATACCCTTG
1 TAGGGTAGAATTACTGAAATACCCTTG
170341856 GTTTACAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (27 bp):
TAGGGTAGAATTACTGAAATACCCTTG
Found at i:170342008 original size:80 final size:81
Alignment explanation
Indices: 170341913--170342064 Score: 236
Period size: 80 Copynumber: 1.9 Consensus size: 81
170341903 ACCACTGGTT
* * *
170341913 TGTAAAATTACCAAAATACCCCTTG-TTTGTAAAATTACCAAAATACACTTGATTTGT-AAATTA
1 TGTAAAATTACCAAAATA-CCCTCGACTTGTAAAATTACCAAAATACACTTAATTTGTAAAATTA
170341976 CCAAAATATCGTCGACC
65 CCAAAATATCGTCGACC
* *
170341993 TGTAAAATTATCAAAATACCCTCGACTTGTAAAATTACCAAAATACCCTTAATTTGTAAAATTAC
1 TGTAAAATTACCAAAATACCCTCGACTTGTAAAATTACCAAAATACACTTAATTTGTAAAATTAC
170342058 CAAAATA
66 CAAAATA
170342065 CCCCTGATTT
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
79 5 0.08
80 46 0.71
81 14 0.22
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (81 bp):
TGTAAAATTACCAAAATACCCTCGACTTGTAAAATTACCAAAATACACTTAATTTGTAAAATTAC
CAAAATATCGTCGACC
Found at i:170342012 original size:107 final size:108
Alignment explanation
Indices: 170341889--170342091 Score: 304
Period size: 107 Copynumber: 1.9 Consensus size: 108
170341879 CTCGATTAGC
** *
170341889 AAAATTACCAAAATACCACT-GGTTTGTAAAATTACCAAAATACCCCTT-GTTTGTAAAATTACC
1 AAAATTACCAAAATACC-CTCGACTTGTAAAATTACCAAAATA-CCCTTAATTTGTAAAATTACC
* *
170341952 AAAATACACTTGATTT-GTAAATTACCAAAATATCGTCGACCTGT
64 AAAATACACCTGATTTAGAAAATTACCAAAATATCGTCGACCTGT
*
170341996 AAAATTATCAAAATACCCTCGACTTGTAAAATTACCAAAATACCCTTAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCTCGACTTGTAAAATTACCAAAATACCCTTAATTTGTAAAATTACCAA
*
170342061 AATACCCCTGATTTAGAAAATTACCAAAATA
66 AATACACCTGATTTAGAAAATTACCAAAATA
170342092 CCCTTGATTT
Statistics
Matches: 86, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
106 7 0.08
107 64 0.74
108 15 0.17
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (108 bp):
AAAATTACCAAAATACCCTCGACTTGTAAAATTACCAAAATACCCTTAATTTGTAAAATTACCAA
AATACACCTGATTTAGAAAATTACCAAAATATCGTCGACCTGT
Found at i:170342211 original size:27 final size:27
Alignment explanation
Indices: 170341845--170342211 Score: 318
Period size: 27 Copynumber: 13.6 Consensus size: 27
170341835 AGAATTACTG
* * *
170341845 AAATACCCTTGGTTTACAAAATTTCCA
1 AAATACCCTTGATTTGCAAAATTACCA
* *
170341872 AAATACCCTCGATTAGCAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTACCA
* *
170341899 AAATACCAC-TGGTTTGTAAAATTACCA
1 AAATACC-CTTGATTTGCAAAATTACCA
*
170341926 AAATACCCCTTG-TTTGTAAAATTACCA
1 AAATA-CCCTTGATTTGCAAAATTACCA
* *
170341953 AAATACACTTGATTTG-TAAATTACCA
1 AAATACCCTTGATTTGCAAAATTACCA
* * * ** * *
170341979 AAATATCGTCGACCTGTAAAATTATCA
1 AAATACCCTTGATTTGCAAAATTACCA
* * *
170342006 AAATACCCTCGACTTGTAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTACCA
* *
170342033 AAATACCCTTAATTTGTAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTACCA
*
170342060 AAATACCCCTGATTTAG-AAAATTACCA
1 AAATACCCTTGATTT-GCAAAATTACCA
* *
170342087 AAATACCCTTGATTTGGATAATTA-CA
1 AAATACCCTTGATTTGCAAAATTACCA
* * *
170342113 GGAATACCCTTGATTTCCAAAATTA-TA
1 -AAATACCCTTGATTTGCAAAATTACCA
*
170342140 GAAATACCCTTTACTTT-CAAAAATTA-CA
1 -AAATACCCTTGA-TTTGC-AAAATTACCA
* *
170342168 GAAATACCATTGGTTTGCAAAATTACCA
1 -AAATACCCTTGATTTGCAAAATTACCA
*
170342196 AAATACCCTTGGTTTG
1 AAATACCCTTGATTTG
170342212 TAGATTTTCC
Statistics
Matches: 286, Mismatches: 42, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
26 27 0.09
27 229 0.80
28 30 0.10
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATACCCTTGATTTGCAAAATTACCA
Found at i:170342528 original size:41 final size:41
Alignment explanation
Indices: 170342471--170342593 Score: 185
Period size: 41 Copynumber: 3.0 Consensus size: 41
170342461 GGAGGAGGAA
* *
170342471 ATTGAGGATCGTATGGTTACTTGATGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCG
*
170342512 ATTGAGGATCGCATGGTTGCTTGACT-ATCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGA-TGACCGTGGATCCACCG
* *
170342553 ATTAAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCG
170342594 GTGGCTTTTA
Statistics
Matches: 74, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
41 73 0.99
42 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCG
Found at i:170343036 original size:22 final size:22
Alignment explanation
Indices: 170343002--170343044 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
170342992 GTTGCTTCGA
*
170343002 TGTTTATGACTATGTGTTGTCT
1 TGTTTACGACTATGTGTTGTCT
*
170343024 TGTTTACGGCTATGTGTTGTC
1 TGTTTACGACTATGTGTTGTC
170343045 CTGTCTATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.12, C:0.12, G:0.26, T:0.51
Consensus pattern (22 bp):
TGTTTACGACTATGTGTTGTCT
Found at i:170345410 original size:41 final size:41
Alignment explanation
Indices: 170345364--170345446 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
170345354 ATCTGAATTG
170345364 TATGATAAATATTTGACTTGTTCTTAATTATGTGTTCTTAA
1 TATGATAAATATTTGACTTGTTCTTAATTATGTGTTCTTAA
170345405 TATGATAAATATTTGACTTGTTCTTAATTATGTGTTCTTAA
1 TATGATAAATATTTGACTTGTTCTTAATTATGTGTTCTTAA
170345446 T
1 T
170345447 TCTTGTTTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.29, C:0.07, G:0.12, T:0.52
Consensus pattern (41 bp):
TATGATAAATATTTGACTTGTTCTTAATTATGTGTTCTTAA
Found at i:170351457 original size:30 final size:30
Alignment explanation
Indices: 170351421--170351551 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
170351411 GACAAGATTG
* * * * *
170351421 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
170351451 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
170351479 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
170351509 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
170351538 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
170351552 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:170351512 original size:58 final size:58
Alignment explanation
Indices: 170351421--170351551 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
170351411 GACAAGATTG
* * * * * *
170351421 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
170351479 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
170351538 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
170351552 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:170354634 original size:13 final size:13
Alignment explanation
Indices: 170354596--170354634 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
170354586 TGGACTTCCA
*
170354596 CACACAGGCGTGT
1 CACACGGGCGTGT
*
170354609 CACATGGGCGTGT
1 CACACGGGCGTGT
*
170354622 CACACGGGTGTGT
1 CACACGGGCGTGT
170354635 TCCTACCAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.18, C:0.26, G:0.36, T:0.21
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:170357463 original size:13 final size:13
Alignment explanation
Indices: 170357445--170357470 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
170357435 ATTTTATAAT
170357445 TATTTTATGTTAA
1 TATTTTATGTTAA
170357458 TATTTTATGTTAA
1 TATTTTATGTTAA
170357471 AAATAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:170359033 original size:40 final size:40
Alignment explanation
Indices: 170358985--170359110 Score: 191
Period size: 40 Copynumber: 3.2 Consensus size: 40
170358975 GGACTAAGAT
170358985 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
170359025 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * * *
170359065 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
170359104 CCGAAGG
1 CCGAAGG
170359111 TACTTGGGTT
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 14 0.18
40 64 0.82
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:170365636 original size:13 final size:13
Alignment explanation
Indices: 170365618--170365643 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
170365608 ATTTTATAAT
170365618 TATTTTATGTTAA
1 TATTTTATGTTAA
170365631 TATTTTATGTTAA
1 TATTTTATGTTAA
170365644 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:170367200 original size:40 final size:39
Alignment explanation
Indices: 170367152--170367357 Score: 270
Period size: 40 Copynumber: 5.2 Consensus size: 39
170367142 GGACTAAGAT
170367152 CCGAAGGCATTTGTGCTAGCTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAG-TACTATATCCGGGCTAAGTC
* * *
170367192 CCGAAGGCATTTGTGCTAGTGATTATATCCAGGCTATGTC
1 CCGAAGGCATTTGTGCTAGT-ACTATATCCGGGCTAAGTC
*
170367232 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAG-TACTATATCCGGGCTAAGTC
* *
170367272 CCGAAGACATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGT-ACTATATCCGGGCTAAGTC
* * * *
170367312 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TACTATATCCGGGCTAAGTC
170367351 CCGAAGG
1 CCGAAGG
170367358 TACTTGGGTT
Statistics
Matches: 146, Mismatches: 16, Indels: 9
0.85 0.09 0.05
Matches are distributed among these distances:
39 16 0.11
40 128 0.88
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCTAGTACTATATCCGGGCTAAGTC
Found at i:170367285 original size:80 final size:80
Alignment explanation
Indices: 170367152--170367356 Score: 331
Period size: 80 Copynumber: 2.6 Consensus size: 80
170367142 GGACTAAGAT
* * *
170367152 CCGAAGGCATTTGTGCTAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTA
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTGATTA
*
170367217 TATCCAGGCTATGTC
66 TATCCAGGCTAAGTC
170367232 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTGATTA
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTGATTA
*
170367297 TATCCGGGCTAAGTC
66 TATCCAGGCTAAGTC
* * *
170367312 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATTCCGAAG
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAG
170367357 GTACTTGGGT
Statistics
Matches: 117, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
79 13 0.11
80 104 0.89
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (80 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTGATTA
TATCCAGGCTAAGTC
Found at i:170370415 original size:40 final size:40
Alignment explanation
Indices: 170370360--170370569 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
170370350 AACATTGGAA
170370360 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
170370400 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
170370440 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
170370480 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
170370519 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
170370560 CTATATCCGG
1 ATATATCCGG
170370570 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:170374543 original size:64 final size:63
Alignment explanation
Indices: 170374398--170374572 Score: 246
Period size: 64 Copynumber: 2.7 Consensus size: 63
170374388 TTGAAACGTA
* **
170374398 GAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTAATAATTTGAAAAGTAGATTGAAAAA
1 GAAATT-AAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT--TTTGAAAAACAGATTGAAAAA
170374463 C
63 C
170374464 GAAAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAACAGAATTGAAAAT
1 G-AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAAACAG-ATTGAAAA-
170374529 A-
62 AC
170374530 G-AATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
170374573 AAGATAGAAT
Statistics
Matches: 102, Mismatches: 3, Indels: 10
0.89 0.03 0.09
Matches are distributed among these distances:
64 46 0.45
65 6 0.06
66 44 0.43
67 6 0.06
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (63 bp):
GAAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAGATTGAAAAAC
Found at i:170374701 original size:71 final size:71
Alignment explanation
Indices: 170374537--170374865 Score: 380
Period size: 71 Copynumber: 4.5 Consensus size: 71
170374527 ATAGAATTAA
* * *
170374537 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT--AAGATAGAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATA-AATTGAAATTACCTCAACG
*
170374599 TG-C-CG
65 TGTCTTG
* *
170374604 AGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGT
170374669 GTCTTG
66 GTCTTG
* *
170374675 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGAAACATGAATTAAAAAGCAAAATTGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAACATAAATT-----G--AAA-T--
* * *
170374740 AATACCTCAGCGTGCCCTG
55 --TACCTCAACGTGTCTTG
*
170374759 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGT
170374824 GTCTTG
66 GTCTTG
*
170374830 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
170374866 CTTGGAAAAC
Statistics
Matches: 223, Mismatches: 21, Indels: 32
0.81 0.08 0.12
Matches are distributed among these distances:
67 30 0.13
68 4 0.02
69 19 0.09
70 6 0.03
71 78 0.35
72 16 0.07
75 1 0.00
76 3 0.01
77 1 0.00
78 1 0.00
79 3 0.01
80 1 0.00
83 16 0.07
84 44 0.20
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGT
GTCTTG
Found at i:170375001 original size:160 final size:160
Alignment explanation
Indices: 170374580--170375116 Score: 998
Period size: 160 Copynumber: 3.4 Consensus size: 160
170374570 TTTAAGATAG
*
170374580 AATTGAAAATACCTCAGCGTG-CC-GAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
170374643 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
170374708 TTT-TT-G-AAACATGAATTAAAAAGCA-A
131 TTTCTTGGAAAACATGAATTAAAAAGCAGA
170374734 AATTG-AAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
170374798 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
170374863 TTTCTTGGAAAACATGAATTAAAAAGCAGA
131 TTTCTTGGAAAACATGAATTAAAAAGCAGA
170374893 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
170374958 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
*
170375023 TTTCTTGGAAAACATGAATTAAAAAGTAGA
131 TTTCTTGGAAAACATGAATTAAAAAGCAGA
*
170375053 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCGATATGAGTTGATTTTTG
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
170375117 GAAAAAACAA
Statistics
Matches: 373, Mismatches: 3, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
153 15 0.04
154 7 0.02
155 107 0.29
156 2 0.01
157 1 0.00
158 19 0.05
159 6 0.02
160 216 0.58
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (160 bp):
AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
TTTCTTGGAAAACATGAATTAAAAAGCAGA
Found at i:170375008 original size:71 final size:71
Alignment explanation
Indices: 170374892--170375025 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
170374882 TAAAAAGCAG
* * *
170374892 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
170374957 AAACAT
66 AAACAT
* * *
170374963 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
170375026 CTTGGAAAAC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:170387293 original size:2 final size:2
Alignment explanation
Indices: 170387233--170387274 Score: 59
Period size: 2 Copynumber: 21.0 Consensus size: 2
170387223 TATTACATAA
*
170387233 AT AT AT ACT -T AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT
1 AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
170387275 TAAAGATATG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
1 1 0.03
2 34 0.94
3 1 0.03
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:170387700 original size:3 final size:3
Alignment explanation
Indices: 170387681--170387744 Score: 105
Period size: 3 Copynumber: 22.0 Consensus size: 3
170387671 GTATATGCAT
*
170387681 ATA ATA A-A AT- ATT ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
170387727 ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA
170387745 TGAAAATACA
Statistics
Matches: 58, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
2 4 0.07
3 54 0.93
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:170388245 original size:14 final size:16
Alignment explanation
Indices: 170388219--170388253 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
170388209 AAAAAAAGGA
170388219 GAGAAAGGGAGA-GGG
1 GAGAAAGGGAGAGGGG
170388234 GAGAAA-GGAGAGGGG
1 GAGAAAGGGAGAGGGG
170388249 GAGAA
1 GAGAA
170388254 GAGAAGGCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (16 bp):
GAGAAAGGGAGAGGGG
Found at i:170395074 original size:40 final size:40
Alignment explanation
Indices: 170395026--170395215 Score: 294
Period size: 40 Copynumber: 4.8 Consensus size: 40
170395016 GGGATTTAAG
*
170395026 CGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGCC
1 CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCC
* * *
170395066 CGGATATAGTAGCTCGCACCAATGCCTTCAGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
170395106 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
170395146 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
170395186 CGGA-ATTAGTCACTAGCACAAATGCCTTCG
1 CGGATA-TAGTAACTCGCACAAATGCCTTCG
170395216 TTATCATCCA
Statistics
Matches: 139, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 2 0.01
40 137 0.99
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:170399411 original size:20 final size:22
Alignment explanation
Indices: 170399382--170399425 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 22
170399372 ATCTTCTCGA
*
170399382 TTTGGTTTG-TTTTGTC-CCTT
1 TTTGGCTTGTTTTTGTCTCCTT
170399402 TTTGGCTTGTTTTTGTCTCCTT
1 TTTGGCTTGTTTTTGTCTCCTT
170399424 TT
1 TT
170399426 GACTCTTGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 8 0.38
21 7 0.33
22 6 0.29
ACGTcount: A:0.00, C:0.16, G:0.18, T:0.66
Consensus pattern (22 bp):
TTTGGCTTGTTTTTGTCTCCTT
Found at i:170402938 original size:40 final size:40
Alignment explanation
Indices: 170402881--170403084 Score: 259
Period size: 40 Copynumber: 5.1 Consensus size: 40
170402871 TGAATGATAC
* *
170402881 CCGGGCTAAG-CCGCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACC-CGAAGGCATTTGTGCTAGTTG-TTATAT
*
170402921 CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* *
170402961 CCGGGTTAAGACCAGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * * *
170403001 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * * *
170403041 CCGAGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
170403081 CCGG
1 CCGG
170403085 CTAAATTCCG
Statistics
Matches: 143, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
40 139 0.97
41 4 0.03
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
Found at i:170412377 original size:40 final size:40
Alignment explanation
Indices: 170412311--170412461 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
170412301 AAATTGAATG
* * *
170412311 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
170412350 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
170412390 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
170412430 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
170412462 ACGTGGTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:170412475 original size:40 final size:40
Alignment explanation
Indices: 170412348--170412477 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
170412338 ATGCTGGAAA
* * *
170412348 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
170412388 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
170412428 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
170412468 TTATATCCGG
1 TTATATCCGG
170412478 TTATATTCCG
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 1 0.01
40 75 0.99
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Done.