Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 548 of 770
Found at i:170419844 original size:15 final size:16
Alignment explanation
Indices: 170419824--170419858 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
170419814 AAATTATCAA
*
170419824 AAAAATAAA-TAAACC
1 AAAAATAAATTAAAAC
170419839 AAAAATAAATTAAAAC
1 AAAAATAAATTAAAAC
170419855 AAAA
1 AAAA
170419859 CCAATAAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.77, C:0.09, G:0.00, T:0.14
Consensus pattern (16 bp):
AAAAATAAATTAAAAC
Found at i:170420032 original size:16 final size:16
Alignment explanation
Indices: 170419990--170420032 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
170419980 CACAAGGCCC
*
170419990 AATGGCCCAATCTTAA
1 AATGGCCCAATCCTAA
170420006 AACTGGCCCAATCCT-A
1 AA-TGGCCCAATCCTAA
170420022 AATGAGCCCAA
1 AATG-GCCCAA
170420033 ATGATCCAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 2 0.08
16 11 0.46
17 11 0.46
ACGTcount: A:0.37, C:0.30, G:0.14, T:0.19
Consensus pattern (16 bp):
AATGGCCCAATCCTAA
Found at i:170421330 original size:16 final size:16
Alignment explanation
Indices: 170421311--170421362 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
170421301 TAAAATTTTT
170421311 TTATTCTATGTATATA
1 TTATTCTATGTATATA
* *
170421327 TTATT-GATG-CTATA
1 TTATTCTATGTATATA
*
170421341 TTATTTTATGTATATA
1 TTATTCTATGTATATA
170421357 TT-TTCT
1 TTATTCT
170421363 TTAAAAATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
14 9 0.31
15 9 0.31
16 11 0.38
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.60
Consensus pattern (16 bp):
TTATTCTATGTATATA
Found at i:170421354 original size:14 final size:13
Alignment explanation
Indices: 170421312--170421360 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 13
170421302 AAAATTTTTT
*
170421312 TATTCTATGTATA
1 TATTTTATGTATA
170421325 TATTATTGATGCTATA
1 TATT-TT-ATG-TATA
170421341 TTATTTTATGTATA
1 -TATTTTATGTATA
170421355 TATTTT
1 TATTTT
170421361 CTTTAAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
13 10 0.32
14 5 0.16
15 6 0.19
16 6 0.19
17 4 0.13
ACGTcount: A:0.29, C:0.04, G:0.08, T:0.59
Consensus pattern (13 bp):
TATTTTATGTATA
Found at i:170429465 original size:8 final size:8
Alignment explanation
Indices: 170429440--170429507 Score: 75
Period size: 8 Copynumber: 8.5 Consensus size: 8
170429430 TAATGATATG
*
170429440 AATAATAA
1 AATATTAA
170429448 AATATATAA
1 AATAT-TAA
170429457 AATATT-A
1 AATATTAA
170429464 AATATTAA
1 AATATTAA
170429472 AATATTAA
1 AATATTAA
* *
170429480 AAAATCAA
1 AATATTAA
*
170429488 AATATCAA
1 AATATTAA
*
170429496 AATATTAG
1 AATATTAA
170429504 AATA
1 AATA
170429508 ATAATAATTA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
7 7 0.13
8 37 0.71
9 8 0.15
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:170429474 original size:15 final size:16
Alignment explanation
Indices: 170429447--170429480 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
170429437 ATGAATAATA
170429447 AAATATATAAAATATT
1 AAATATATAAAATATT
170429463 AAATAT-TAAAATATT
1 AAATATATAAAATATT
170429478 AAA
1 AAA
170429481 AAATCAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAATATATAAAATATT
Found at i:170429721 original size:22 final size:24
Alignment explanation
Indices: 170429661--170429725 Score: 98
Period size: 25 Copynumber: 2.8 Consensus size: 24
170429651 CGTGATAATA
170429661 TTAAAAATATATACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
170429686 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
170429709 TT-AAAATATATACATAA
1 TTAAAAATATATACATAA
170429726 GATAACATGT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
22 14 0.37
23 3 0.08
25 21 0.55
ACGTcount: A:0.55, C:0.06, G:0.05, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:170429775 original size:15 final size:17
Alignment explanation
Indices: 170429745--170429797 Score: 51
Period size: 15 Copynumber: 3.4 Consensus size: 17
170429735 TAGAAAAAAA
170429745 AATATATGTATATAAAT
1 AATATATGTATATAAAT
170429762 AATATA-GTAT-TAAA-
1 AATATATGTATATAAAT
* *
170429776 GATATATGCATA-AAAT
1 AATATATGTATATAAAT
*
170429792 AGTATA
1 AATATA
170429798 AAAATATATA
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
14 5 0.17
15 10 0.34
16 8 0.28
17 6 0.21
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.36
Consensus pattern (17 bp):
AATATATGTATATAAAT
Found at i:170429788 original size:25 final size:24
Alignment explanation
Indices: 170429760--170429806 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
170429750 ATGTATATAA
* *
170429760 ATAATATAGTATTAAAGATATATGC
1 ATAAAATAGTA-TAAAAATATATGC
170429785 ATAAAATAGTATAAAAATATAT
1 ATAAAATAGTATAAAAATATAT
170429807 ATACGTAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (24 bp):
ATAAAATAGTATAAAAATATATGC
Found at i:170429819 original size:26 final size:25
Alignment explanation
Indices: 170429753--170429884 Score: 73
Period size: 23 Copynumber: 5.5 Consensus size: 25
170429743 AAAATATATG
* *
170429753 TATATAAATAATATAGTATTAAAGA
1 TATATACATAATATAGTATAAAAGA
* * *
170429778 TATATGCATAAAATAGTATAAAAATA
1 TATATACATAATATAGTAT-AAAAGA
* * **
170429804 TATATACGTAATATAGAATTTAA-A
1 TATATACATAATATAGTATAAAAGA
*
170429828 -ATATACCTAATATA-T-TAAAAGGA
1 TATATACATAATATAGTATAAAA-GA
* *
170429851 TATAT--ATAATATAATAT-TAAGA
1 TATATACATAATATAGTATAAAAGA
*
170429873 AATATA-ATAATA
1 TATATACATAATA
170429885 ACAAAAGGAG
Statistics
Matches: 82, Mismatches: 18, Indels: 16
0.71 0.16 0.14
Matches are distributed among these distances:
21 3 0.04
22 13 0.16
23 23 0.28
24 6 0.07
25 18 0.22
26 19 0.23
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.35
Consensus pattern (25 bp):
TATATACATAATATAGTATAAAAGA
Found at i:170430487 original size:30 final size:29
Alignment explanation
Indices: 170430383--170430486 Score: 84
Period size: 30 Copynumber: 3.5 Consensus size: 29
170430373 TAGGTACAAG
* *
170430383 TGGTGGTGGAACAAGTGTGGTTAGTGGAGT
1 TGGTAGTGGAA-AAGTGTGGCTAGTGGAGT
* * * * *
170430413 AGGTAATGGAGCAAGTGTGACTAGT-GACTT
1 TGGTAGTGGA-AAAGTGTGGCTAGTGGA-GT
**
170430443 TGGCGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTAGTGGAAAA-GTGTGGCTAGTGGAGT
170430473 TGGTAGTGGAAAAG
1 TGGTAGTGGAAAAG
170430487 GCTAAGATTT
Statistics
Matches: 54, Mismatches: 16, Indels: 9
0.68 0.20 0.11
Matches are distributed among these distances:
29 5 0.09
30 47 0.87
31 2 0.04
ACGTcount: A:0.25, C:0.06, G:0.43, T:0.26
Consensus pattern (29 bp):
TGGTAGTGGAAAAGTGTGGCTAGTGGAGT
Found at i:170431415 original size:39 final size:40
Alignment explanation
Indices: 170431307--170431441 Score: 128
Period size: 40 Copynumber: 3.4 Consensus size: 40
170431297 AGATAAACTG
* * *
170431307 AACACACCAGACAGAAGCTCATAAGAGCTAATCCAATTAA
1 AACACGCCAAACAGAAGCTCATAAGAGCTAATCCAATCAA
* * * * *
170431347 AATACGCCAAATAGAAGCTCATAAAAGCTAGTCCACTCAA
1 AACACGCCAAACAGAAGCTCATAAGAGCTAATCCAATCAA
* * * ** *
170431387 TACATGCC-AACAGAAGCTCATAAGAGCTAATCTACCCGA
1 AACACGCCAAACAGAAGCTCATAAGAGCTAATCCAATCAA
*
170431426 ATCACGCCAAACAGAA
1 AACACGCCAAACAGAA
170431442 AGTATAACGC
Statistics
Matches: 74, Mismatches: 20, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
39 30 0.41
40 44 0.59
ACGTcount: A:0.44, C:0.27, G:0.13, T:0.16
Consensus pattern (40 bp):
AACACGCCAAACAGAAGCTCATAAGAGCTAATCCAATCAA
Found at i:170432936 original size:29 final size:25
Alignment explanation
Indices: 170432899--170432998 Score: 87
Period size: 28 Copynumber: 3.7 Consensus size: 25
170432889 TTATCATATT
170432899 ATTTCGCACTTCTGTGCTTATCGTTGTAAA
1 ATTT-GCACTT-TGTGCTTATCGTT-T--A
170432929 ATTTGCACTTTGGTGCTTATCGTAATTA
1 ATTTGCACTTT-GTGCTTATCGT--TTA
* *
170432957 TTTTGCACTTCAGTGCTTATC-TTT-
1 ATTTGCACTT-TGTGCTTATCGTTTA
170432981 ATTTGCACTTTGTGCTTA
1 ATTTGCACTTTGTGCTTA
170432999 GTGATATATG
Statistics
Matches: 62, Mismatches: 4, Indels: 15
0.77 0.05 0.19
Matches are distributed among these distances:
23 7 0.11
24 9 0.15
25 2 0.03
27 1 0.02
28 20 0.32
29 17 0.27
30 5 0.08
31 1 0.02
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (25 bp):
ATTTGCACTTTGTGCTTATCGTTTA
Found at i:170432972 original size:28 final size:27
Alignment explanation
Indices: 170432888--170432998 Score: 88
Period size: 29 Copynumber: 4.1 Consensus size: 27
170432878 AATTAGTGCT
* * *
170432888 CTTATCATATTATTTCGCACTTCTGTG
1 CTTATCGTATTATTTTGCACTTCAGTG
* **
170432915 CTTATCGT-TGTAAAATTTGCACTTTGGTG
1 CTTATCGTAT-T--ATTTTGCACTTCAGTG
170432944 CTTATCGTAATTATTTTGCACTTCAGTG
1 CTTATCGT-ATTATTTTGCACTTCAGTG
*
170432972 CTTATC-T-TTA-TTTGCACTT-TGTG
1 CTTATCGTATTATTTTGCACTTCAGTG
170432995 CTTA
1 CTTA
170432999 GTGATATATG
Statistics
Matches: 70, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
23 7 0.10
24 9 0.13
25 3 0.04
26 1 0.01
27 9 0.13
28 19 0.27
29 20 0.29
30 1 0.01
31 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (27 bp):
CTTATCGTATTATTTTGCACTTCAGTG
Found at i:170432975 original size:57 final size:50
Alignment explanation
Indices: 170432888--170432998 Score: 132
Period size: 57 Copynumber: 2.1 Consensus size: 50
170432878 AATTAGTGCT
*
170432888 CTTATCATATTATTTCGCACTTCTGTGCTTATCGTTGTAAAATTTGCACTTTGGTG
1 CTTATCATATTATTTCGCACTTCAGTGCTTATC-TT-T---ATTTGCACTTT-GTG
* *
170432944 CTTATCGTAATTATTTTGCACTTCAGTGCTTATCTTTATTTGCACTTTGTG
1 CTTATCAT-ATTATTTCGCACTTCAGTGCTTATCTTTATTTGCACTTTGTG
170432995 CTTA
1 CTTA
170432999 GTGATATATG
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
51 7 0.14
52 11 0.22
55 1 0.02
56 9 0.18
57 23 0.45
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (50 bp):
CTTATCATATTATTTCGCACTTCAGTGCTTATCTTTATTTGCACTTTGTG
Found at i:170434755 original size:83 final size:83
Alignment explanation
Indices: 170434663--170434835 Score: 346
Period size: 83 Copynumber: 2.1 Consensus size: 83
170434653 AGGCCATGTA
170434663 GCACACACGGCTGAGACACACACCTGTGTCTCTGCCCATGTGCTCAAATTTGAGCATTCTGTTTC
1 GCACACACGGCTGAGACACACACCTGTGTCTCTGCCCATGTGCTCAAATTTGAGCATTCTGTTTC
170434728 TCGAATTAAAGGTGCAGG
66 TCGAATTAAAGGTGCAGG
170434746 GCACACACGGCTGAGACACACACCTGTGTCTCTGCCCATGTGCTCAAATTTGAGCATTCTGTTTC
1 GCACACACGGCTGAGACACACACCTGTGTCTCTGCCCATGTGCTCAAATTTGAGCATTCTGTTTC
170434811 TCGAATTAAAGGTGCAGG
66 TCGAATTAAAGGTGCAGG
170434829 GCACACA
1 GCACACA
170434836 TGGCCTAACT
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (83 bp):
GCACACACGGCTGAGACACACACCTGTGTCTCTGCCCATGTGCTCAAATTTGAGCATTCTGTTTC
TCGAATTAAAGGTGCAGG
Found at i:170437023 original size:20 final size:20
Alignment explanation
Indices: 170437000--170437043 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
170436990 AATCCAAATC
*
170437000 AAAATCCTGAAATTCAGGAT
1 AAAATCCTAAAATTCAGGAT
170437020 AAAATCCTAAAATTCAGGAT
1 AAAATCCTAAAATTCAGGAT
170437040 AAAA
1 AAAA
170437044 ATACTGATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.52, C:0.14, G:0.11, T:0.23
Consensus pattern (20 bp):
AAAATCCTAAAATTCAGGAT
Found at i:170443680 original size:39 final size:39
Alignment explanation
Indices: 170443635--170443715 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 39
170443625 TTCAAGACAC
170443635 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGT
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGT
* *
170443674 TGGAAATGTATCCGGGCTAAAGTCCCGCGGGCTTTGTGT
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGT
170443713 TGG
1 TGG
170443716 TAATATAATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.19, C:0.21, G:0.33, T:0.27
Consensus pattern (39 bp):
TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGT
Found at i:170447759 original size:15 final size:16
Alignment explanation
Indices: 170447739--170447773 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
170447729 AAATTATCAA
*
170447739 AAAAATAAA-TAAACC
1 AAAAATAAATTAAAAC
170447754 AAAAATAAATTAAAAC
1 AAAAATAAATTAAAAC
170447770 AAAA
1 AAAA
170447774 CCAATAAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.77, C:0.09, G:0.00, T:0.14
Consensus pattern (16 bp):
AAAAATAAATTAAAAC
Found at i:170447947 original size:16 final size:16
Alignment explanation
Indices: 170447905--170447947 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
170447895 CACAAGGCCC
*
170447905 AATGGCCCAATCTTAA
1 AATGGCCCAATCCTAA
170447921 AACTGGCCCAATCCT-A
1 AA-TGGCCCAATCCTAA
170447937 AATGAGCCCAA
1 AATG-GCCCAA
170447948 ATGATCCAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 2 0.08
16 11 0.46
17 11 0.46
ACGTcount: A:0.37, C:0.30, G:0.14, T:0.19
Consensus pattern (16 bp):
AATGGCCCAATCCTAA
Found at i:170449245 original size:16 final size:16
Alignment explanation
Indices: 170449226--170449277 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
170449216 TAAAATTTTT
170449226 TTATTCTATGTATATA
1 TTATTCTATGTATATA
* *
170449242 TTATT-GATG-CTATA
1 TTATTCTATGTATATA
*
170449256 TTATTTTATGTATATA
1 TTATTCTATGTATATA
170449272 TT-TTCT
1 TTATTCT
170449278 TTAAAAATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
14 9 0.31
15 9 0.31
16 11 0.38
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.60
Consensus pattern (16 bp):
TTATTCTATGTATATA
Found at i:170449269 original size:14 final size:13
Alignment explanation
Indices: 170449227--170449275 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 13
170449217 AAAATTTTTT
*
170449227 TATTCTATGTATA
1 TATTTTATGTATA
170449240 TATTATTGATGCTATA
1 TATT-TT-ATG-TATA
170449256 TTATTTTATGTATA
1 -TATTTTATGTATA
170449270 TATTTT
1 TATTTT
170449276 CTTTAAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
13 10 0.32
14 5 0.16
15 6 0.19
16 6 0.19
17 4 0.13
ACGTcount: A:0.29, C:0.04, G:0.08, T:0.59
Consensus pattern (13 bp):
TATTTTATGTATA
Found at i:170457377 original size:8 final size:8
Alignment explanation
Indices: 170457352--170457419 Score: 75
Period size: 8 Copynumber: 8.5 Consensus size: 8
170457342 TAATGATATG
*
170457352 AATAATAA
1 AATATTAA
170457360 AATATATAA
1 AATAT-TAA
170457369 AATATT-A
1 AATATTAA
170457376 AATATTAA
1 AATATTAA
170457384 AATATTAA
1 AATATTAA
* *
170457392 AAAATCAA
1 AATATTAA
*
170457400 AATATCAA
1 AATATTAA
*
170457408 AATATTAG
1 AATATTAA
170457416 AATA
1 AATA
170457420 ATAATAATTA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
7 7 0.13
8 37 0.71
9 8 0.15
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:170457386 original size:15 final size:16
Alignment explanation
Indices: 170457359--170457392 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
170457349 ATGAATAATA
170457359 AAATATATAAAATATT
1 AAATATATAAAATATT
170457375 AAATAT-TAAAATATT
1 AAATATATAAAATATT
170457390 AAA
1 AAA
170457393 AAATCAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAATATATAAAATATT
Found at i:170457630 original size:22 final size:24
Alignment explanation
Indices: 170457570--170457634 Score: 98
Period size: 25 Copynumber: 2.8 Consensus size: 24
170457560 CGTGATAATA
170457570 TTAAAAATATATACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
170457595 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
170457618 TT-AAAATATATACATAA
1 TTAAAAATATATACATAA
170457635 GATAACATGT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
22 14 0.37
23 3 0.08
25 21 0.55
ACGTcount: A:0.55, C:0.06, G:0.05, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:170457684 original size:15 final size:17
Alignment explanation
Indices: 170457654--170457706 Score: 51
Period size: 15 Copynumber: 3.4 Consensus size: 17
170457644 TAGAAAAAAA
170457654 AATATATGTATATAAAT
1 AATATATGTATATAAAT
170457671 AATATA-GTAT-TAAA-
1 AATATATGTATATAAAT
* *
170457685 GATATATGCATA-AAAT
1 AATATATGTATATAAAT
*
170457701 AGTATA
1 AATATA
170457707 AAAATATATA
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
14 5 0.17
15 10 0.34
16 8 0.28
17 6 0.21
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.36
Consensus pattern (17 bp):
AATATATGTATATAAAT
Found at i:170457697 original size:25 final size:24
Alignment explanation
Indices: 170457669--170457715 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
170457659 ATGTATATAA
* *
170457669 ATAATATAGTATTAAAGATATATGC
1 ATAAAATAGTA-TAAAAATATATGC
170457694 ATAAAATAGTATAAAAATATAT
1 ATAAAATAGTATAAAAATATAT
170457716 ATACGTAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (24 bp):
ATAAAATAGTATAAAAATATATGC
Found at i:170457728 original size:26 final size:25
Alignment explanation
Indices: 170457662--170457793 Score: 73
Period size: 23 Copynumber: 5.5 Consensus size: 25
170457652 AAAATATATG
* *
170457662 TATATAAATAATATAGTATTAAAGA
1 TATATACATAATATAGTATAAAAGA
* * *
170457687 TATATGCATAAAATAGTATAAAAATA
1 TATATACATAATATAGTAT-AAAAGA
* * **
170457713 TATATACGTAATATAGAATTTAA-A
1 TATATACATAATATAGTATAAAAGA
*
170457737 -ATATACCTAATATA-T-TAAAAGGA
1 TATATACATAATATAGTATAAAA-GA
* *
170457760 TATAT--ATAATATAATAT-TAAGA
1 TATATACATAATATAGTATAAAAGA
*
170457782 AATATA-ATAATA
1 TATATACATAATA
170457794 ACAAAAGGAG
Statistics
Matches: 82, Mismatches: 18, Indels: 16
0.71 0.16 0.14
Matches are distributed among these distances:
21 3 0.04
22 13 0.16
23 23 0.28
24 6 0.07
25 18 0.22
26 19 0.23
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.35
Consensus pattern (25 bp):
TATATACATAATATAGTATAAAAGA
Found at i:170461656 original size:29 final size:29
Alignment explanation
Indices: 170461624--170461725 Score: 159
Period size: 29 Copynumber: 3.5 Consensus size: 29
170461614 TTTTCCGCTT
* * * *
170461624 GCACACATAGTGTCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAC
*
170461653 GCACACTTAGTGCCTTATATTTCCAGCAC
1 GCACACTTAGTGCCATATATTTCCAGCAC
170461682 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCATATATTTCCAGCAC
170461711 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
170461726 ATCTCGTCAC
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAC
Found at i:170464473 original size:121 final size:121
Alignment explanation
Indices: 170464259--170464502 Score: 436
Period size: 121 Copynumber: 2.0 Consensus size: 121
170464249 AAACACATAC
* *
170464259 CTCAATCAAGCTTGGACCATGGTCAAATGCTTCAAACAGTTAAACCCTATCTTTTCATTTTATTT
1 CTCAATCAAGCTTGGACCATGGCCAAATGCTTCAAACACTTAAACCCTATCTTTTCATTTTATTT
*
170464324 TCGGTGGAAGATGAATGAACCAAATGAATTTTTAACCTTTGTTTTAATAATATTAA
66 TCGGTGGAAGATGAATGAACCAAATGAATTTTTAACCTTTATTTTAATAATATTAA
170464380 CTCAATCAAGCTTGGACCATGGCCAAATGCTTCAAACACTTAAACCCTATCTTTTC-TTTCTATT
1 CTCAATCAAGCTTGGACCATGGCCAAATGCTTCAAACACTTAAACCCTATCTTTTCATTT-TATT
*
170464444 TTTGGTGGAAGATGAATGAACCAAATGAATTTTTAACCTTTATTTTAATAATATTAA
65 TTCGGTGGAAGATGAATGAACCAAATGAATTTTTAACCTTTATTTTAATAATATTAA
170464501 CT
1 CT
170464503 TAAATTTACC
Statistics
Matches: 118, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
120 3 0.03
121 115 0.97
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (121 bp):
CTCAATCAAGCTTGGACCATGGCCAAATGCTTCAAACACTTAAACCCTATCTTTTCATTTTATTT
TCGGTGGAAGATGAATGAACCAAATGAATTTTTAACCTTTATTTTAATAATATTAA
Found at i:170465680 original size:37 final size:37
Alignment explanation
Indices: 170465621--170465692 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
170465611 ATCTCAGACG
*
170465621 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
*
170465658 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
170465693 ATATATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:170465966 original size:48 final size:48
Alignment explanation
Indices: 170465838--170466022 Score: 300
Period size: 48 Copynumber: 3.8 Consensus size: 48
170465828 GCACATCGCC
*
170465838 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
170465888 TATATATTTCACATT-GACCATTCGGATTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
170465936 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
170465984 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
170466023 TGCATGTTCA
Statistics
Matches: 126, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
48 83 0.66
49 2 0.02
50 41 0.33
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:170466027 original size:98 final size:97
Alignment explanation
Indices: 170465838--170466021 Score: 309
Period size: 98 Copynumber: 1.9 Consensus size: 97
170465828 GCACATCGCC
*
170465838 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
170465903 GACCATTCGGATTTACCACATATGCATATCTCA
65 GACCATTCGGATTTACCACATATGCATATCTCA
*
170465936 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
*
170465999 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCGGATTTACCACATAT
170466022 ATGCATGTTC
Statistics
Matches: 82, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
95 1 0.01
96 35 0.43
98 46 0.56
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCGGATTTACCACATATGCATATCTCA
Found at i:170466071 original size:47 final size:47
Alignment explanation
Indices: 170465992--170466232 Score: 365
Period size: 47 Copynumber: 5.1 Consensus size: 47
170465982 CATACATATT
* * * *
170465992 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
170466039 CCACATTGGCCATTCGGCCTTATCGCACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
170466086 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
170466133 TCACATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
170466180 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
170466227 TCACAT
1 TCACAT
170466233 AAAATCCTAA
Statistics
Matches: 178, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 178 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:170466111 original size:22 final size:22
Alignment explanation
Indices: 170466085--170466203 Score: 73
Period size: 22 Copynumber: 5.1 Consensus size: 22
170466075 GCTCACATTC
170466085 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
170466107 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
170466131 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
170466154 ATCACATATATGCATATTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
170466178 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
170466201 ATC
1 ATC
170466204 TCATATATAC
Statistics
Matches: 71, Mismatches: 14, Indels: 24
0.65 0.13 0.22
Matches are distributed among these distances:
22 24 0.34
23 13 0.18
24 13 0.18
25 21 0.30
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:170466113 original size:94 final size:94
Alignment explanation
Indices: 170465945--170466232 Score: 357
Period size: 94 Copynumber: 3.1 Consensus size: 94
170465935 ATACATATTT
* * * * *
170465945 CACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATGCATA-CTC--ACAT-TCATCACATTGGCCATTC
* * *
170466007 GGCTTTACCACATATATGCATGTTCATATTCAC
62 GGCCTTATCACATATATGCATGTTCACATTCAC
* *
170466040 CACATTGGCCATTCGGCCTTATCGCACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATGCATACTCACATTCATCACATTGGCCATTCGGCC
*
170466105 TTATCACATATATGCATGTTCACATTCAT
66 TTATCACATATATGCATGTTCACATTCAC
* *
170466134 CACATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATGCATACTCACATTCATCACATTGGCCATTCGGCC
* * ** *
170466199 TTATCTCATATATACACATTCACATTCAT
66 TTATCACATATATGCATGTTCACATTCAC
170466228 CACAT
1 CACAT
170466233 AAAATCCTAA
Statistics
Matches: 172, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
93 1 0.01
94 138 0.80
95 19 0.11
96 4 0.02
97 10 0.06
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATGCATACTCACATTCATCACATTGGCCATTCGGCC
TTATCACATATATGCATGTTCACATTCAC
Found at i:170466233 original size:25 final size:25
Alignment explanation
Indices: 170466107--170466233 Score: 81
Period size: 25 Copynumber: 5.3 Consensus size: 25
170466097 ATTCGGCCTT
**
170466107 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* * *
170466132 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
*
170466154 ATCACATATATGCATATTCACATTC
1 ATCACATATATGCACATTCACATTC
* * *
170466179 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
* *
170466201 ATCTCATATATACACATTCACATTC
1 ATCACATATATGCACATTCACATTC
170466226 ATCACATA
1 ATCACATA
170466234 AAATCCTAAA
Statistics
Matches: 73, Mismatches: 19, Indels: 20
0.65 0.17 0.18
Matches are distributed among these distances:
22 20 0.27
23 12 0.16
24 11 0.15
25 30 0.41
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:170475451 original size:27 final size:26
Alignment explanation
Indices: 170475403--170475462 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
170475393 ACGAAGCTGC
*
170475403 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
170475430 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
170475456 CAGATAT
1 CAGATAT
170475463 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:170476240 original size:27 final size:27
Alignment explanation
Indices: 170476210--170476292 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 27
170476200 ATCGGTAGTC
*
170476210 CTACCCTACAGGGGTATTTTAGTAATT
1 CTACCCTACAGGGGTATTTCAGTAATT
* * *
170476237 CTACCCTGCAAGGGTATTTCGGTAATT
1 CTACCCTACAGGGGTATTTCAGTAATT
* *
170476264 CTACCTTATAGGGGTATTTCAGTAATT
1 CTACCCTACAGGGGTATTTCAGTAATT
170476291 CT
1 CT
170476293 GTAAATCGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
CTACCCTACAGGGGTATTTCAGTAATT
Found at i:170476243 original size:54 final size:54
Alignment explanation
Indices: 170476175--170476292 Score: 146
Period size: 54 Copynumber: 2.2 Consensus size: 54
170476165 AGGGGCAAAA
* * *
170476175 TAGTCATTTTACCCTCCAAGGGTAAATCGGTAGTCCTACCCTACAGGGGTATTT
1 TAGTAATTCTACCCTCCAAGGGTAAATCGGTAATCCTACCCTACAGGGGTATTT
* ** * * *
170476229 TAGTAATTCTACCCTGCAAGGGTATTTCGGTAATTCTACCTTATAGGGGTATTT
1 TAGTAATTCTACCCTCCAAGGGTAAATCGGTAATCCTACCCTACAGGGGTATTT
*
170476283 CAGTAATTCT
1 TAGTAATTCT
170476293 GTAAATCGAG
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (54 bp):
TAGTAATTCTACCCTCCAAGGGTAAATCGGTAATCCTACCCTACAGGGGTATTT
Found at i:170476305 original size:27 final size:27
Alignment explanation
Indices: 170476275--170476371 Score: 83
Period size: 27 Copynumber: 3.6 Consensus size: 27
170476265 TACCTTATAG
*
170476275 GGGTATTTCAGTAATTCTGTAAATCGA
1 GGGTATTTCGGTAATTCTGTAAATCGA
*** * * *
170476302 GGGTAAAACGATAATTCTGTAAATTGG
1 GGGTATTTCGGTAATTCTGTAAATCGA
170476329 GGGTACTTT-GGTAATT-T-TACAAGTCGA
1 GGGTA-TTTCGGTAATTCTGTA-AA-TCGA
170476356 GGGTATTTCGGTAATT
1 GGGTATTTCGGTAATT
170476372 TGGTAAACCA
Statistics
Matches: 53, Mismatches: 13, Indels: 8
0.72 0.18 0.11
Matches are distributed among these distances:
25 2 0.04
26 6 0.11
27 45 0.85
ACGTcount: A:0.29, C:0.09, G:0.26, T:0.36
Consensus pattern (27 bp):
GGGTATTTCGGTAATTCTGTAAATCGA
Found at i:170477754 original size:24 final size:24
Alignment explanation
Indices: 170477697--170477744 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
170477687 CGTATGAATT
170477697 TAAAAGTATGTTTCAATATTTTTA
1 TAAAAGTATGTTTCAATATTTTTA
170477721 TAAAAGTATGTTTCAATATTTTTA
1 TAAAAGTATGTTTCAATATTTTTA
170477745 CTTAAGTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (24 bp):
TAAAAGTATGTTTCAATATTTTTA
Found at i:170480491 original size:16 final size:16
Alignment explanation
Indices: 170480467--170480504 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
170480457 ATCAATAAAA
170480467 AATTATTTTTGA-GCAT
1 AATTATTTTT-ATGCAT
*
170480483 AATTTTTTTTATGCAT
1 AATTATTTTTATGCAT
170480499 AATTAT
1 AATTAT
170480505 ATGCGAAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 1 0.05
16 18 0.95
ACGTcount: A:0.32, C:0.05, G:0.08, T:0.55
Consensus pattern (16 bp):
AATTATTTTTATGCAT
Found at i:170482373 original size:42 final size:42
Alignment explanation
Indices: 170482327--170482420 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 42
170482317 TCCTTGATAG
* **
170482327 GGTCTTACACGAAATTAGATACGATGCCAATGTCCCAGACAT
1 GGTCTTACACGAAATCAGATACGACACCAATGTCCCAGACAT
* * *
170482369 GGTCTTACATGTAATCAGATACGACACCAATGTTCCAGACAT
1 GGTCTTACACGAAATCAGATACGACACCAATGTCCCAGACAT
170482411 GGTCTTACAC
1 GGTCTTACAC
170482421 ATAAATCTCA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
GGTCTTACACGAAATCAGATACGACACCAATGTCCCAGACAT
Found at i:170486495 original size:40 final size:40
Alignment explanation
Indices: 170486429--170486579 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
170486419 AAATTGAATG
* * *
170486429 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
170486468 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
170486508 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
170486548 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
170486580 ACGTGATTAA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:170494506 original size:40 final size:40
Alignment explanation
Indices: 170494440--170494590 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
170494430 AAATTGAATG
* * *
170494440 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
170494479 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
170494519 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
170494559 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
170494591 ACGTGATTAA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:170505712 original size:27 final size:28
Alignment explanation
Indices: 170505655--170505723 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
170505645 AAATTTGTAC
**
170505655 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
170505683 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
170505710 AGCACTAAGTGTGC
1 AGCACTAAGTGTGC
170505724 AGACTCACTA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:170505735 original size:27 final size:27
Alignment explanation
Indices: 170505655--170505736 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
170505645 AAATTTGTAC
** * *
170505655 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCG-AGCTCACTATAT
* * *
170505683 AGCACTATGTGTGCGAGCTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
170505710 AGCACTAAGTGTGC-AGACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
170505737 GCTTTTGCAT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.04
27 31 0.66
28 14 0.30
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:170512799 original size:23 final size:23
Alignment explanation
Indices: 170512773--170512820 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
170512763 TTCAATTCCT
170512773 TTTTTCTTTTATTTTTT-TCTCTC
1 TTTTT-TTTTATTTTTTCTCTCTC
* *
170512796 TTTTTTTTTCTTTTTTCTTTCTC
1 TTTTTTTTTATTTTTTCTCTCTC
170512819 TT
1 TT
170512821 CTTCCTCTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (23 bp):
TTTTTTTTTATTTTTTCTCTCTC
Found at i:170516773 original size:13 final size:13
Alignment explanation
Indices: 170516755--170516782 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
170516745 CATCTTTTTA
170516755 TTATTTTTCATCT
1 TTATTTTTCATCT
170516768 TTATTTTTCATCT
1 TTATTTTTCATCT
170516781 TT
1 TT
170516783 CCAATTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (13 bp):
TTATTTTTCATCT
Found at i:170521808 original size:47 final size:47
Alignment explanation
Indices: 170521757--170521874 Score: 143
Period size: 47 Copynumber: 2.5 Consensus size: 47
170521747 AAGTCAAAGC
*
170521757 CATGTCCCAGACATGGTCTTACACTGACTATCGCCTCA-C-A-GCCAACG
1 CATGTCCCAGACAT-GTCTTACACTGACT-T-ACCTCATCGAGGCCAACG
* * * *
170521804 CATGTCCCAAACATGTCTTACACTGACTTACTTCATCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGACTTACCTCATCGAGGCCAACG
170521851 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
170521875 AGCACTCATC
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
44 4 0.06
45 2 0.03
46 15 0.24
47 41 0.66
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.25
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTGACTTACCTCATCGAGGCCAACG
Found at i:170524940 original size:8 final size:8
Alignment explanation
Indices: 170524903--170524933 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
170524893 TTACTAAAAC
170524903 TTATTATA
1 TTATTATA
*
170524911 CTATTATA
1 TTATTATA
170524919 TTATTATA
1 TTATTATA
170524927 TTATTAT
1 TTATTAT
170524934 TATATTAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (8 bp):
TTATTATA
Found at i:170525101 original size:35 final size:36
Alignment explanation
Indices: 170525055--170525126 Score: 119
Period size: 35 Copynumber: 2.0 Consensus size: 36
170525045 AATTGGTAAG
170525055 TCTATTTAATTTCTATTCTTATAATTTTTGAG-TTT
1 TCTATTTAATTTCTATTCTTATAATTTTTGAGCTTT
* *
170525090 TCTATTTAATTTCTTTTCTTGTAATTTTTGAGCTTT
1 TCTATTTAATTTCTATTCTTATAATTTTTGAGCTTT
170525126 T
1 T
170525127 ATTATCCTAG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
35 30 0.88
36 4 0.12
ACGTcount: A:0.19, C:0.10, G:0.07, T:0.64
Consensus pattern (36 bp):
TCTATTTAATTTCTATTCTTATAATTTTTGAGCTTT
Found at i:170531883 original size:46 final size:46
Alignment explanation
Indices: 170531830--170532005 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
170531820 TATTTGGGCA
170531830 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
170531876 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
170531923 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
170531969 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
170532006 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:170531985 original size:93 final size:93
Alignment explanation
Indices: 170531826--170531997 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
170531816 GGGATATTTG
* *
170531826 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
170531891 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
170531919 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
170531984 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
170531998 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:170534934 original size:15 final size:15
Alignment explanation
Indices: 170534914--170534982 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
170534904 GTATCTTGGG
170534914 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
170534929 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
170534944 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
170534959 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
170534974 TTTCTTTAT
1 TTTCTTTAT
170534983 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:170534983 original size:30 final size:30
Alignment explanation
Indices: 170534905--170534992 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
170534895 CATAGTATCG
* * * *
170534905 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
170534935 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
170534965 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
170534993 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:170537424 original size:46 final size:46
Alignment explanation
Indices: 170537374--170537549 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
170537364 TATTTGGGCA
170537374 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
170537420 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
170537467 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
170537513 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
170537550 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:170537529 original size:93 final size:93
Alignment explanation
Indices: 170537370--170537541 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
170537360 TGGATATTTG
* *
170537370 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
170537435 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
170537463 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
170537528 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
170537542 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:170545308 original size:40 final size:41
Alignment explanation
Indices: 170545253--170545359 Score: 134
Period size: 40 Copynumber: 2.7 Consensus size: 41
170545243 GAAATTATAT
* *
170545253 CGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGC-TAC-ATC
1 CGGGCTAAGACCCGAAGGCAATTCGTGCGAGT--CATACTATC
*
170545293 CGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTCTATC
1 CGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCATACTATC
170545333 CGGGCTAAGACCCGAAGGC-ATTCGTGC
1 CGGGCTAAGACCCGAAGGCAATTCGTGC
170545360 ACGTGTTATA
Statistics
Matches: 61, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
38 1 0.02
39 5 0.08
40 55 0.90
ACGTcount: A:0.23, C:0.26, G:0.30, T:0.21
Consensus pattern (41 bp):
CGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCATACTATC
Found at i:170553457 original size:40 final size:40
Alignment explanation
Indices: 170553330--170553459 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
170553320 ATGCTGGAAA
* *
170553330 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
170553370 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
170553410 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
170553450 TTATATCCGG
1 TTATATCCGG
170553460 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:170574523 original size:16 final size:16
Alignment explanation
Indices: 170574493--170574536 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
170574483 TAATATATCA
*
170574493 AATTG-TGTTTAAATG
1 AATTGATGTGTAAATG
170574508 AATTGATGTGTAAATG
1 AATTGATGTGTAAATG
*
170574524 AAATGTATGTGTA
1 AATTG-ATGTGTA
170574537 TGGAATGATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 5 0.20
16 13 0.52
17 7 0.28
ACGTcount: A:0.36, C:0.00, G:0.23, T:0.41
Consensus pattern (16 bp):
AATTGATGTGTAAATG
Found at i:170574666 original size:30 final size:29
Alignment explanation
Indices: 170574630--170574729 Score: 123
Period size: 28 Copynumber: 3.5 Consensus size: 29
170574620 GACAAGATTG
* *
170574630 GCACTAAGTGTGCGGGTTTAAAATTGTATA
1 GCACTAAGTGTGCGAGTTT-AAATTATATA
* *
170574660 GCACTAAGTGTGCGAGTTT-GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAATTATATA
* *
170574688 GCACTAAGTGTGCGAGCTGAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAATTATATA
170574716 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
170574730 GATTCACTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
28 43 0.69
29 1 0.02
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTAAATTATATA
Found at i:170582505 original size:25 final size:26
Alignment explanation
Indices: 170582452--170582572 Score: 72
Period size: 25 Copynumber: 4.6 Consensus size: 26
170582442 TGACGAGATT
** *
170582452 GGCACTAAGTGTGCG-G-GAAATATAT
1 GGCACTAAGTGTGCGAGCTCAA-ATAC
170582477 GGCACTAAGTGTGC-ATGCT-AAATAC
1 GGCACTAAGTGTGCGA-GCTCAAATAC
** *
170582502 GGCACTGGGTGTGCGAGCTCGAAATAT
1 GGCACTAAGTGTGCGAGCTC-AAATAC
* * *
170582529 GGCACTATGTGTGCG-GCTTAAATTGC
1 GGCACTAAGTGTGCGAGCTCAAA-TAC
170582555 GTGGCACTAAGTGTGCGA
1 --GGCACTAAGTGTGCGA
170582573 TCACTATATG
Statistics
Matches: 75, Mismatches: 11, Indels: 16
0.74 0.11 0.16
Matches are distributed among these distances:
25 35 0.47
26 8 0.11
27 18 0.24
28 14 0.19
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (26 bp):
GGCACTAAGTGTGCGAGCTCAAATAC
Found at i:170593781 original size:40 final size:40
Alignment explanation
Indices: 170593686--170593818 Score: 140
Period size: 40 Copynumber: 3.3 Consensus size: 40
170593676 GTGTCCGGGC
* * * *
170593686 TAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGAGT
* * * *
170593727 CAACTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGAGT
* * * *
170593767 TAAGTCCCGAAGGCATTCGTGGGAGTTATTAAATCCGAGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGAGT
*
170593807 TAATTCCCGAAG
1 TAAGTCCCGAAG
170593819 ATAATTGTAC
Statistics
Matches: 75, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
40 56 0.75
41 19 0.25
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGAGT
Found at i:170597178 original size:27 final size:28
Alignment explanation
Indices: 170597113--170597182 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
170597103 AAATTTGTAC
170597113 AGCACTAAGTGTGCGAGTTGGATCATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
170597141 AGCACTAAGTGTGCGAGTT-GATTATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
170597168 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
170597183 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTGGATCATAT
Found at i:170597193 original size:27 final size:27
Alignment explanation
Indices: 170597113--170597194 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
170597103 AAATTTGTAC
* *
170597113 AGCACTAAGTGTGCGAGTTGGA-TCATAT
1 AGCACTAAGTGTGCGAGCT-CACT-ATAT
* * *
170597141 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
170597168 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
170597195 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 27 0.56
28 20 0.42
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:170601738 original size:23 final size:23
Alignment explanation
Indices: 170601673--170601740 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
170601663 ACTAATTTAC
*
170601673 CCTCCAAACACAACCATATATA-
1 CCTCCAAACAAAACCATATATAT
* * * *
170601695 CCTTCAAACATAACTAAATATAT
1 CCTCCAAACAAAACCATATATAT
170601718 CCTCCAAACAAAACCATATATAT
1 CCTCCAAACAAAACCATATATAT
170601741 AAGCTTTGAA
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
22 18 0.49
23 19 0.51
ACGTcount: A:0.47, C:0.29, G:0.00, T:0.24
Consensus pattern (23 bp):
CCTCCAAACAAAACCATATATAT
Found at i:170601779 original size:23 final size:22
Alignment explanation
Indices: 170601649--170601790 Score: 97
Period size: 22 Copynumber: 6.2 Consensus size: 22
170601639 TAAAACTATC
* * *
170601649 ACCCACCAAACACAACTAATTT
1 ACCCTCCAAACACAACCAATAT
170601671 ACCCTCCAAACACAACCATATAT
1 ACCCTCCAAACACAACCA-ATAT
* * *
170601694 A-CCTTCAAACATAACTAAATAT
1 ACCCTCCAAACACAAC-CAATAT
* *
170601716 ATCCTCCAAACAAAACCATATATAT
1 ACCCTCCAAACACAACC--A-ATAT
** *** *
170601741 AAGCTTTGAACGCAACCAAGTAT
1 ACCCTCCAAACACAACCAA-TAT
170601764 ACCCTCCAAACACAACCAATAT
1 ACCCTCCAAACACAACCAATAT
170601786 ACCCT
1 ACCCT
170601791 TCAACATATC
Statistics
Matches: 91, Mismatches: 22, Indels: 14
0.72 0.17 0.11
Matches are distributed among these distances:
22 42 0.46
23 34 0.37
24 1 0.01
25 14 0.15
ACGTcount: A:0.44, C:0.32, G:0.03, T:0.20
Consensus pattern (22 bp):
ACCCTCCAAACACAACCAATAT
Found at i:170601781 original size:48 final size:46
Alignment explanation
Indices: 170601655--170601794 Score: 133
Period size: 48 Copynumber: 3.1 Consensus size: 46
170601645 TATCACCCAC
* *
170601655 CAAACACAA-CTAATTTACCCTCCAAACACAACC-ATATATACCTT
1 CAAACACAACCAAATATACCCTCCAAACACAACCAATATATACCTT
* * * * *
170601699 CAAACATAACTAAATATATCCTCCAAACAAAACCATATATATAAGCTT
1 CAAACACAACCAAATATACCCTCCAAACACAACCA-ATATAT-ACCTT
** * * *
170601747 TGAACGCAACCAAGTATACCCTCCAAACACAACCAATATA-CCCTT
1 CAAACACAACCAAATATACCCTCCAAACACAACCAATATATACCTT
170601792 CAA
1 CAA
170601795 CATATCCACT
Statistics
Matches: 73, Mismatches: 19, Indels: 7
0.74 0.19 0.07
Matches are distributed among these distances:
44 8 0.11
45 23 0.32
47 11 0.15
48 31 0.42
ACGTcount: A:0.45, C:0.31, G:0.03, T:0.21
Consensus pattern (46 bp):
CAAACACAACCAAATATACCCTCCAAACACAACCAATATATACCTT
Found at i:170603220 original size:36 final size:36
Alignment explanation
Indices: 170603173--170603282 Score: 211
Period size: 36 Copynumber: 3.0 Consensus size: 36
170603163 TATAAAAGAA
170603173 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCG
170603209 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATC-G
170603246 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCG
170603282 G
1 G
170603283 GTCTCGCCCG
Statistics
Matches: 73, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
36 37 0.51
37 36 0.49
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (36 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCG
Found at i:170603293 original size:37 final size:37
Alignment explanation
Indices: 170603173--170603286 Score: 221
Period size: 37 Copynumber: 3.1 Consensus size: 37
170603163 TATAAAAGAA
170603173 GTCTTACCCGGTCATAATCTCCACACGTAGTCATC-G
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
170603209 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
170603246 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
170603283 GTCT
1 GTCT
170603287 CGCCCGGAAC
Statistics
Matches: 77, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
36 35 0.45
37 42 0.55
ACGTcount: A:0.21, C:0.32, G:0.18, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:170603542 original size:51 final size:49
Alignment explanation
Indices: 170603389--170603547 Score: 264
Period size: 49 Copynumber: 3.2 Consensus size: 49
170603379 CATATATTTT
*
170603389 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCACC
170603438 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCACC
* * *
170603487 ACATCGGCCATTAGGCCTCATCACATTTACACATACACTTTCACATTCATC
1 ACATCGGCCATTAGGCCTCATCACA--TATACATACACTTTCACGTTCACC
170603538 ACATCGGCCA
1 ACATCGGCCA
170603548 ATCAATACTA
Statistics
Matches: 104, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
49 73 0.70
51 31 0.30
ACGTcount: A:0.29, C:0.34, G:0.10, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCACC
Found at i:170607612 original size:34 final size:33
Alignment explanation
Indices: 170607572--170607645 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 33
170607562 AATTTTATTT
170607572 AAAAATTTGAATAA-AAATT-TTAAAAACTAATTCC
1 AAAAATTT-AA-AATAAATTATTAAAAACTAATT-C
* *
170607606 AAAAATTTAAAATAAATTATTTAAAACTAATTT
1 AAAAATTTAAAATAAATTATTAAAAACTAATTC
170607639 AAAAATT
1 AAAAATT
170607646 AAATGTATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
32 2 0.06
33 14 0.39
34 20 0.56
ACGTcount: A:0.58, C:0.05, G:0.01, T:0.35
Consensus pattern (33 bp):
AAAAATTTAAAATAAATTATTAAAAACTAATTC
Found at i:170610693 original size:46 final size:46
Alignment explanation
Indices: 170610643--170610818 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
170610633 TGGTTGAGCA
170610643 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
170610689 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
170610734 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
170610782 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
170610819 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:170610799 original size:93 final size:93
Alignment explanation
Indices: 170610640--170610811 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
170610630 GGATGGTTGA
* *
170610640 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
170610705 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
170610733 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
170610798 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
170610812 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:170618268 original size:46 final size:46
Alignment explanation
Indices: 170618218--170618393 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
170618208 TGGTTGAGCA
170618218 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
170618264 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
170618309 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
170618357 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
170618394 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:170618374 original size:93 final size:93
Alignment explanation
Indices: 170618215--170618386 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
170618205 GGATGGTTGA
* *
170618215 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
170618280 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
170618308 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
170618373 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
170618387 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:170622363 original size:2 final size:2
Alignment explanation
Indices: 170622356--170622392 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
170622346 TCACTTGGCC
170622356 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
170622393 CTCAAAACAT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:170624817 original size:46 final size:44
Alignment explanation
Indices: 170624690--170624851 Score: 168
Period size: 46 Copynumber: 3.6 Consensus size: 44
170624680 ATGCCGATAC
*
170624690 CATGTCCCAGACATGGTCTTACACTAGCT-CATCCATCAAGTCGATG
1 CATGTCCCAGACATGGTCTTACACT-GCTACAT-C-TCGAGTCGATG
* * *
170624736 CCATGTCCCAGACATGGTCTTATACTGATAGATCTCGTAGTCGATG
1 -CATGTCCCAGACATGGTCTTACACTGCTACATCTCG-AGTCGATG
* *
170624782 CATGTCCCAGACAT-GTCTTGCACTGGCTTACATCTCGAGGCTGATG
1 CATGTCCCAGACATGGTCTTACACT-GC-TACATCTCGAGTC-GATG
*
170624828 CATGTCCCAGACAT-GTCATACACT
1 CATGTCCCAGACATGGTCTTACACT
170624852 AGCTCAAGTT
Statistics
Matches: 99, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
44 8 0.08
45 20 0.20
46 45 0.45
47 26 0.26
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (44 bp):
CATGTCCCAGACATGGTCTTACACTGCTACATCTCGAGTCGATG
Found at i:170624872 original size:46 final size:46
Alignment explanation
Indices: 170624690--170624887 Score: 122
Period size: 46 Copynumber: 4.3 Consensus size: 46
170624680 ATGCCGATAC
* *
170624690 CATGTCCCAGACATGGTCTTACACTAGCT--CATCCATCAAGTC-GATG
1 CATGTCCCAGACAT-GTCATACACTAGCTCACAT-C-TCAAGACTGATG
* * * * * *
170624736 CCATGTCCCAGACATGGTCTTATACT-GAT-AGATCTCGTAGTC-GATG
1 -CATGTCCCAGACAT-GTCATACACTAGCTCACATCTC-AAGACTGATG
* * * * * *
170624782 CATGTCCCAGACATGTCTTGCACTGGCTTACATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCATACACTAGCTCACATCTCAAGACTGATG
* *
170624828 CATGTCCCAGACATGTCATACACTAGCTCA-AGTTTCAATACTGATG
1 CATGTCCCAGACATGTCATACACTAGCTCACA-TCTCAAGACTGATG
*
170624874 CCATGTCTCAGACA
1 -CATGTCCCAGACA
170624888 CGGTCTTACA
Statistics
Matches: 125, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
44 8 0.06
45 22 0.18
46 57 0.46
47 38 0.30
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCATACACTAGCTCACATCTCAAGACTGATG
Found at i:170627549 original size:27 final size:27
Alignment explanation
Indices: 170627510--170627609 Score: 105
Period size: 27 Copynumber: 3.7 Consensus size: 27
170627500 TGGATAAGTT
170627510 ATAGAA-TACCGAAATACCCCTGTAGG
1 ATAGAATTACCGAAATACCCCTGTAGG
** *
170627536 ATAGAATTACCGAAATACCTTTGTTGG
1 ATAGAATTACCGAAATACCCCTGTAGG
* *
170627563 GTAGAAATACC-AAATTACCCCTGTAGG
1 ATAGAATTACCGAAA-TACCCCTGTAGG
* * *
170627590 GTAGAATTATCGAGATACCC
1 ATAGAATTACCGAAATACCC
170627610 TTGTGGGGAA
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
26 9 0.15
27 49 0.82
28 2 0.03
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (27 bp):
ATAGAATTACCGAAATACCCCTGTAGG
Found at i:170629867 original size:51 final size:46
Alignment explanation
Indices: 170629771--170629876 Score: 131
Period size: 46 Copynumber: 2.2 Consensus size: 46
170629761 GACAGGACAG
* * *
170629771 GACAGAAATGAGCCATGTAAGTCCATATCAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAGATATATGGCATTGGA
*
170629817 GACAGGAATGAGCCATGTAAGCCCATATTAGATATATATAATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAG----ATAT-ATGGCATTGGA
170629868 GACAGGAAT
1 GACAGGAAT
170629877 AATTCATGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
46 28 0.55
50 4 0.08
51 19 0.37
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.25
Consensus pattern (46 bp):
GACAGGAATGAGCCATGTAAGCCCATATCAGATATATGGCATTGGA
Found at i:170640502 original size:69 final size:71
Alignment explanation
Indices: 170640420--170640581 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
170640410 CGATTTGTCT
170640420 CGTAGCTCTCTTGTCTACATGGTGTCC-TCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
170640483 CTTTCA
66 CTTTCA
170640489 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
170640554 CTTTCA
66 CTTTCA
170640560 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
170640582 GATACATCTC
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
69 27 0.30
70 24 0.26
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:170640619 original size:71 final size:70
Alignment explanation
Indices: 170640420--170640615 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
170640410 CGATTTGTCT
* * *
170640420 CGTAGCTCTCTTGTCTACATGGTGT-CCTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
170640483 CTTTCA
65 CTTTCA
* * * *
170640489 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
170640554 CTTTCA
65 CTTTCA
* *
170640560 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
170640616 TACAGGGTGT
Statistics
Matches: 117, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 26 0.22
70 26 0.22
71 43 0.37
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:170648002 original size:66 final size:68
Alignment explanation
Indices: 170647924--170648110 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
170647914 TAGTACCACT
*
170647924 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
170647986 CACG
65 CACG
170647990 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
170648055 ATCACG
63 ATCACG
170648061 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
170648111 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:170648035 original size:71 final size:71
Alignment explanation
Indices: 170647947--170648110 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
170647937 CGATTTGTCT
170647947 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
170648012 CTTTCA
66 CTTTCA
170648018 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
170648083 CTTTCA
66 CTTTCA
170648089 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
170648111 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:170648148 original size:71 final size:70
Alignment explanation
Indices: 170647947--170648144 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
170647937 CGATTTGTCT
* * * *
170647947 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
170648012 CTTTCA
65 CTTTCA
* * * *
170648018 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
170648083 CTTTCA
65 CTTTCA
* *
170648089 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
170648145 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:170654652 original size:40 final size:40
Alignment explanation
Indices: 170654607--170654773 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
170654597 CGGAATATAA
170654607 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
170654647 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
170654687 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
170654727 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
170654766 CCGGATAT
1 CCGGATAT
170654774 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:170654757 original size:80 final size:79
Alignment explanation
Indices: 170654623--170654773 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
170654613 ATAATCACGT
*
170654623 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
170654688 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
170654703 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
170654766 CCGGATAT
64 CCGGATAT
170654774 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:170656037 original size:58 final size:56
Alignment explanation
Indices: 170655960--170656079 Score: 145
Period size: 58 Copynumber: 2.1 Consensus size: 56
170655950 ATCCTCCCCC
*
170655960 TTTTCCCTTAGTAATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTTTCTT
1 TTTTTCCTTAGTAATTTCGGCCAAGAAGATGGAG-AAGGATGAAC-AATTTTTTTCTT
*** *
170656017 TTCTTTCCTTAGTACA-TTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTCTT
1 TT-TTTCCTTAGTA-ATTTCGGCCAAGAAGATGGAGAAGGATGAACAATTTTTTTCTT
170656074 TTTTTC
1 TTTTTC
170656080 TTTTTCATAT
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
56 4 0.07
57 15 0.27
58 32 0.58
59 4 0.07
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.41
Consensus pattern (56 bp):
TTTTTCCTTAGTAATTTCGGCCAAGAAGATGGAGAAGGATGAACAATTTTTTTCTT
Found at i:170663325 original size:20 final size:18
Alignment explanation
Indices: 170663243--170663352 Score: 57
Period size: 20 Copynumber: 5.9 Consensus size: 18
170663233 TTCTAAAATT
* *
170663243 AATATTATTTTAATAGTTT
1 AATATTAATTTAATA-TTA
170663262 AATATTAAATTTAAT-TT-
1 AATATT-AATTTAATATTA
* * *
170663279 AATACATATTTTAATAGTA
1 AATA-TTAATTTAATATTA
**
170663298 TTTTATTAATTTAATATTA
1 -AATATTAATTTAATATTA
*
170663317 AAGTGATT-ATCTTAATATTT
1 AA-T-ATTAAT-TTAATATTA
170663337 AAT-TTAATTTAATATT
1 AATATTAATTTAATATT
170663353 TATCTTGTAG
Statistics
Matches: 70, Mismatches: 12, Indels: 20
0.69 0.12 0.20
Matches are distributed among these distances:
17 21 0.30
18 6 0.09
19 21 0.30
20 22 0.31
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.54
Consensus pattern (18 bp):
AATATTAATTTAATATTA
Found at i:170663409 original size:12 final size:12
Alignment explanation
Indices: 170663392--170663416 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
170663382 AATAAGATTC
170663392 AATATTATATTT
1 AATATTATATTT
170663404 AATATTATATTT
1 AATATTATATTT
170663416 A
1 A
170663417 TCTTAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
AATATTATATTT
Found at i:170663444 original size:20 final size:21
Alignment explanation
Indices: 170663404--170663444 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
170663394 TATTATATTT
* *
170663404 AATATTATATTTATCTTAATA
1 AATATTACATTAATCTTAATA
170663425 AATATTACATTAAT-TTAATA
1 AATATTACATTAATCTTAATA
170663445 TTAAAGTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (21 bp):
AATATTACATTAATCTTAATA
Found at i:170669307 original size:23 final size:22
Alignment explanation
Indices: 170669264--170669319 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
170669254 AAAGGATATC
* *
170669264 TACAAATAAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
170669285 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
170669308 TACATATCATAT
1 TACAAATCATAT
170669320 ATAAGATTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.10
22 16 0.53
23 11 0.37
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:170676161 original size:21 final size:18
Alignment explanation
Indices: 170676135--170676176 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 18
170676125 ACGATTCTAG
170676135 TTAAAATTCAATTTTGTCGAT
1 TTAAAATTC-ATTTT-TC-AT
170676156 TTAAAATTCATTTTTCAT
1 TTAAAATTCATTTTTCAT
170676174 TTA
1 TTA
170676177 GATTGGAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.24
19 2 0.10
20 5 0.24
21 9 0.43
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.52
Consensus pattern (18 bp):
TTAAAATTCATTTTTCAT
Found at i:170679360 original size:42 final size:43
Alignment explanation
Indices: 170679274--170679363 Score: 112
Period size: 42 Copynumber: 2.1 Consensus size: 43
170679264 TAGAAATCTG
* * *
170679274 AGTTCGTGATATATGTGAGAATCTGAACTTGTTGAGTGGTCCA
1 AGTTCGTGATATATGTGAGAATCTCAACTTGTTAAGAGGTCCA
* *
170679317 AGTTCGTGATCTATGTG-GCAT-TCAAGCTTGTTAAGAGGTCCA
1 AGTTCGTGATATATGTGAGAATCTCAA-CTTGTTAAGAGGTCCA
170679359 AGTTC
1 AGTTC
170679364 ATTATGGATG
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
41 3 0.07
42 22 0.54
43 16 0.39
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.34
Consensus pattern (43 bp):
AGTTCGTGATATATGTGAGAATCTCAACTTGTTAAGAGGTCCA
Found at i:170685230 original size:6 final size:6
Alignment explanation
Indices: 170685199--170685341 Score: 96
Period size: 6 Copynumber: 23.3 Consensus size: 6
170685189 AAGAAACATT
* * * * *
170685199 ATCAGA A-CTAGA ATCAAA ATAAGA ATCTGA ATCAGA ATTCGGTG A-CAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA A-TCAG-A ATCAGA
* * *
170685248 ATCAAA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
170685297 ATTAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
170685342 GTGAATGCAA
Statistics
Matches: 104, Mismatches: 22, Indels: 22
0.70 0.15 0.15
Matches are distributed among these distances:
5 5 0.05
6 87 0.84
7 9 0.09
8 3 0.03
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:170685273 original size:49 final size:49
Alignment explanation
Indices: 170685208--170685319 Score: 161
Period size: 49 Copynumber: 2.3 Consensus size: 49
170685198 TATCAGAACT
* * * *
170685208 AGAATCAAAATAAGAATCTGAATCAGAATTCGGTGACAGAATCAAAATC
1 AGAATCAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAAAATC
* *
170685257 AGAATCAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATTAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAAAATC
*
170685306 AGAATCAGTATCAG
1 AGAATCAGAATCAG
170685320 GTAACAGAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 56 1.00
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (49 bp):
AGAATCAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAAAATC
Found at i:170685297 original size:31 final size:31
Alignment explanation
Indices: 170685244--170685341 Score: 119
Period size: 31 Copynumber: 3.2 Consensus size: 31
170685234 AATTCGGTGA
*
170685244 CAGAATCAAAATCA-G-AATCAGAATCAGAAT
1 CAGAATCAGAATCAGGTAA-CAGAATCAGAAT
* * *
170685274 CAGAATCAGAATTAGGTGACAGAATTAGAAT
1 CAGAATCAGAATCAGGTAACAGAATCAGAAT
* *
170685305 CAGAATCAGTATCAGGTAACAGAATCAAAAT
1 CAGAATCAGAATCAGGTAACAGAATCAGAAT
170685336 CAGAAT
1 CAGAAT
170685342 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
30 12 0.21
31 44 0.77
32 1 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (31 bp):
CAGAATCAGAATCAGGTAACAGAATCAGAAT
Found at i:170685508 original size:27 final size:26
Alignment explanation
Indices: 170685460--170685519 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
170685450 ACGATGCTGC
* *
170685460 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCA-AAA
* * *
170685487 CAGATATTGTGGCTAGGCCACCAAAA
1 CAGATATTGTGACGAAGCCACCAAAA
170685513 CAGATAT
1 CAGATAT
170685520 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 9 0.32
27 19 0.68
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAAAA
Found at i:170685904 original size:27 final size:27
Alignment explanation
Indices: 170685874--170686103 Score: 225
Period size: 27 Copynumber: 8.5 Consensus size: 27
170685864 CTGCACAAGG
* *
170685874 GTATCTCGGTAATTCTACCTTACAGGA
1 GTATTTCGGTAATTCTACCCTACAGGA
* * * *
170685901 GTATTTCAGTCATTCTACCCTAAAGGG
1 GTATTTCGGTAATTCTACCCTACAGGA
* *
170685928 GTATTTTGGTATTTCTACCCTACAAGG-
1 GTATTTCGGTAATTCTACCCTAC-AGGA
*
170685955 GTATTTCGATAATTCTACCCTACA-GA
1 GTATTTCGGTAATTCTACCCTACAGGA
** *
170685981 GGTATTTTAGTAATTCTACCCTACAGGG
1 -GTATTTCGGTAATTCTACCCTACAGGA
* *
170686009 GTATTTCGGTATTTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGA
* *
170686036 GCATTTCGGTATTTCTACCCTACAAGG-
1 GTATTTCGGTAATTCTACCCTAC-AGGA
* * *
170686063 GTATTTCGGCATTTCTACCCTACA-AA
1 GTATTTCGGTAATTCTACCCTACAGGA
170686089 GGTATTTCGGTAATT
1 -GTATTTCGGTAATT
170686104 TTGTAAATCG
Statistics
Matches: 169, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
25 1 0.01
26 2 0.01
27 159 0.94
28 7 0.04
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
GTATTTCGGTAATTCTACCCTACAGGA
Found at i:170685959 original size:54 final size:54
Alignment explanation
Indices: 170685872--170686103 Score: 265
Period size: 54 Copynumber: 4.3 Consensus size: 54
170685862 TACTGCACAA
* * *
170685872 GGGTATCTCGGTAATTCTACCTTAC-AGGAGTATTTCAGTCA-TTCTACCCTAAAG
1 GGGTATTTCGGTAATTCTACCCTACAAGG-GTATTTC-GTCATTTCTACCCTACAG
* * *
170685926 GGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGAT-AATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCG-TCATTTCTACCCTACAG
* ** *
170685980 AGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGT-ATTTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC-GTCATTTCTACCCTACAG
* * * *
170686034 GGGCATTTCGGTATTTCTACCCTACAAGGGTATTTCGGCATTTCTACCCTACAA
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGTCATTTCTACCCTACAG
*
170686088 AGGTATTTCGGTAATT
1 GGGTATTTCGGTAATT
170686104 TTGTAAATCG
Statistics
Matches: 152, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
53 3 0.02
54 145 0.95
55 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (54 bp):
GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGTCATTTCTACCCTACAG
Found at i:170685968 original size:81 final size:81
Alignment explanation
Indices: 170685868--170686100 Score: 294
Period size: 81 Copynumber: 2.9 Consensus size: 81
170685858 ATTTTACTGC
* *
170685868 ACAAGGGTATCTCGGTAATTCTACCTTACAGGAGTATTTCAGTCATTCTACCCTAAAGGGGTATT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGAGTATTTCAGTCATTCTACCCTAAAGGGGTATT
*
170685933 TTGGTATTTCTACCCT
66 TCGGTATTTCTACCCT
* * * *
170685949 ACAAGGGTATTTCGATAATTCTACCCTACA-GAGGTATTTTAGTAATTCTACCCTACAGGGGTAT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGA-GTATTTCAGTCATTCTACCCTAAAGGGGTAT
170686013 TTCGGTATTTCTACCCT
65 TTCGGTATTTCTACCCT
* * * * *
170686030 ACAGGGGCATTTCGGTATTTCTACCCTACAAGG-GTATTTC-GGCATTTCTACCCTACAA-AGGT
1 ACAAGGGTATTTCGGTAATTCTACCCTAC-AGGAGTATTTCAGTCA-TTCTACCCTA-AAGGGGT
170686092 ATTTCGGTA
63 ATTTCGGTA
170686101 ATTTTGTAAA
Statistics
Matches: 131, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
80 4 0.03
81 124 0.95
82 2 0.02
83 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (81 bp):
ACAAGGGTATTTCGGTAATTCTACCCTACAGGAGTATTTCAGTCATTCTACCCTAAAGGGGTATT
TCGGTATTTCTACCCT
Found at i:170686119 original size:27 final size:26
Alignment explanation
Indices: 170686089--170686428 Score: 122
Period size: 27 Copynumber: 12.6 Consensus size: 26
170686079 ACCCTACAAA
* *
170686089 GGTATTTCGGTAATTTTGTAAATCGAT
1 GGTATTT-GGTAATTTTGTAAATCAAG
*** *
170686116 GGTAAAAAGGTAATTCTGTAAATCAAG
1 GGT-ATTTGGTAATTTTGTAAATCAAG
** * *
170686143 GGTACTTTGGTAATTTTACAAGTCGAG
1 GGTA-TTTGGTAATTTTGTAAATCAAG
* ** ** ** *
170686170 GTTATTTCAATAATTTTACAGGTCGAG
1 GGTATTT-GGTAATTTTGTAAATCAAG
* *** *
170686197 GGTATTTCAGTAATTTCACAAATCAGG
1 GGTATTT-GGTAATTTTGTAAATCAAG
** ** *
170686224 GGTATTTTAATAATTTTACAAACCAAG
1 GGTA-TTTGGTAATTTTGTAAATCAAG
** * *
170686251 GGTATTTTGGTAATTTTACAAATTAGG
1 GGTA-TTTGGTAATTTTGTAAATCAAG
* * *
170686278 GGTATTTTGGTAATTTTATAAACCAGG
1 GGTA-TTTGGTAATTTTGTAAATCAAG
* *
170686305 GGTATTTTGGTAATTTTGTAAACCAAC
1 GGTA-TTTGGTAATTTTGTAAATCAAG
** * *
170686332 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTA-TTTGGTAATTTTGTAAATCAAG
* * *
170686359 GGTATTTTGGTGATTTTATAAACCAAG
1 GGTA-TTTGGTAATTTTGTAAATCAAG
** ** *
170686386 GGTATTTTATTAATTTTACAAACCAAG
1 GGTA-TTTGGTAATTTTGTAAATCAAG
170686413 GGTATTTTGGTAATTT
1 GGTA-TTTGGTAATTT
170686429 GATAAACTAA
Statistics
Matches: 256, Mismatches: 53, Indels: 8
0.81 0.17 0.03
Matches are distributed among these distances:
26 4 0.02
27 248 0.97
28 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (26 bp):
GGTATTTGGTAATTTTGTAAATCAAG
Found at i:170686435 original size:27 final size:27
Alignment explanation
Indices: 170686139--170686428 Score: 292
Period size: 27 Copynumber: 10.7 Consensus size: 27
170686129 TTCTGTAAAT
* **
170686139 CAAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *** ***
170686166 CGAGGTTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* ** * *
170686193 CGAGGGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* **
170686220 CAGGGGTATTTTAATAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
170686247 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
170686274 TAGGGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* **
170686301 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
170686328 CAACGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
170686355 CAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
**
170686382 CAAGGGTATTTTATTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
170686409 CAAGGGTATTTTGGTAATTT
1 CAAGGGTATTTTGGTAATTT
170686429 GATAAACTAA
Statistics
Matches: 220, Mismatches: 43, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 220 1.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:170688434 original size:6 final size:6
Alignment explanation
Indices: 170688404--170688540 Score: 93
Period size: 6 Copynumber: 22.3 Consensus size: 6
170688394 AAGAAACATT
* * * *
170688404 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATTCGGTG A-CAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA A-TCAG-A ATCAGA
* * * *
170688453 ATCAGA ATCAGA ATCAGA ATCAGA ATCAAA ATTAG- GTGACAGA ATTAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
170688502 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
170688541 GTGAATGCAA
Statistics
Matches: 100, Mismatches: 20, Indels: 22
0.70 0.14 0.15
Matches are distributed among these distances:
5 5 0.05
6 83 0.83
7 9 0.09
8 3 0.03
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:170688460 original size:43 final size:43
Alignment explanation
Indices: 170688413--170688518 Score: 149
Period size: 43 Copynumber: 2.5 Consensus size: 43
170688403 TATCAGAACT
* * *
170688413 AGAATCAAAATGAGAATCAGAATCAGAATTCGGTGACAGAATC
1 AGAATCAAAATCAGAATCAGAATCAAAATTAGGTGACAGAATC
* *
170688456 AGAATCAGAATCAGAATCAGAATCAAAATTAGGTGACAGAATT
1 AGAATCAAAATCAGAATCAGAATCAAAATTAGGTGACAGAATC
* *
170688499 AGAATCAGAATCAGTATCAG
1 AGAATCAAAATCAGAATCAG
170688519 GTAACAGAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (43 bp):
AGAATCAAAATCAGAATCAGAATCAAAATTAGGTGACAGAATC
Found at i:170688496 original size:31 final size:31
Alignment explanation
Indices: 170688461--170688540 Score: 106
Period size: 31 Copynumber: 2.6 Consensus size: 31
170688451 GAATCAGAAT
* *
170688461 CAGAATCAGAATCAGAATCAAAATTAGGTGA
1 CAGAATCAGAATCAGAATCAAAATCAGGTAA
* **
170688492 CAGAATTAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAAAATCAGGTAA
*
170688523 CAGAATCAAAATCAGAAT
1 CAGAATCAGAATCAGAAT
170688541 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAAAATCAGGTAA
Found at i:170689103 original size:27 final size:27
Alignment explanation
Indices: 170689073--170689302 Score: 189
Period size: 27 Copynumber: 8.5 Consensus size: 27
170689063 CTGCACAAGG
* *
170689073 GTATCTCGGTAATTCTACCTTACAGGA
1 GTATTTCGGTAATTCTACCCTACAGGA
* * *
170689100 GTATTTCAGTCATTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGA
* * *
170689127 GTGTTTTGGTATTTCTACCCTACAAGG-
1 GTATTTCGGTAATTCTACCCTAC-AGGA
* *
170689154 GCATTTCGATAATTCTACCCTACA-GA
1 GTATTTCGGTAATTCTACCCTACAGGA
** * *
170689180 GGTATTTTAGTAATTCTACCTTACAGGG
1 -GTATTTCGGTAATTCTACCCTACAGGA
* * *
170689208 GTATTTTGGTATTTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGA
* * *
170689235 GCATTTCGGTATTTTTACCCTACAAGG-
1 GTATTTCGGTAATTCTACCCTAC-AGGA
* * *
170689262 GTATTTCGGCATTTCTACCCTACA-AA
1 GTATTTCGGTAATTCTACCCTACAGGA
170689288 GGTATTTCGGTAATT
1 -GTATTTCGGTAATT
170689303 TTGTAAATCG
Statistics
Matches: 163, Mismatches: 33, Indels: 14
0.78 0.16 0.07
Matches are distributed among these distances:
25 1 0.01
26 2 0.01
27 153 0.94
28 7 0.04
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (27 bp):
GTATTTCGGTAATTCTACCCTACAGGA
Found at i:170689167 original size:81 final size:81
Alignment explanation
Indices: 170689067--170689299 Score: 283
Period size: 81 Copynumber: 2.9 Consensus size: 81
170689057 ATTTTACTGC
* * * *
170689067 ACAAGGGTATCTCGGTAATTCTACCTTACAGGAGTATTTCAGTCATTCTACCCTACAGGGGTGTT
1 ACAAGGGCATTTCGGTAATTCTACCCTACAGGAGTATTTCAGTCATTCTACCCTACAGGGGTATT
170689132 TTGGTATTTCTACCCT
66 TTGGTATTTCTACCCT
* * * *
170689148 ACAAGGGCATTTCGATAATTCTACCCTACA-GAGGTATTTTAGTAATTCTACCTTACAGGGGTAT
1 ACAAGGGCATTTCGGTAATTCTACCCTACAGGA-GTATTTCAGTCATTCTACCCTACAGGGGTAT
170689212 TTTGGTATTTCTACCCT
65 TTTGGTATTTCTACCCT
* * * * **
170689229 ACAGGGGCATTTCGGTATTTTTACCCTACAAGG-GTATTTC-GGCATTTCTACCCTACAAAGGTA
1 ACAAGGGCATTTCGGTAATTCTACCCTAC-AGGAGTATTTCAGTCA-TTCTACCCTACAGGGGTA
*
170689292 TTTCGGTA
64 TTTTGGTA
170689300 ATTTTGTAAA
Statistics
Matches: 129, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
80 4 0.03
81 123 0.95
82 1 0.01
83 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (81 bp):
ACAAGGGCATTTCGGTAATTCTACCCTACAGGAGTATTTCAGTCATTCTACCCTACAGGGGTATT
TTGGTATTTCTACCCT
Found at i:170689169 original size:54 final size:54
Alignment explanation
Indices: 170689071--170689299 Score: 226
Period size: 54 Copynumber: 4.2 Consensus size: 54
170689061 TACTGCACAA
* * * * * *
170689071 GGGTATCTCGGTAATTCTACCTTAC-AGGAGTATTTCAGTCATTCTACCCTACAG
1 GGGTATTTTGGTATTTCTACCCTACAAGG-GTATTTCGGTAATTCTACCCTACAG
* * *
170689125 GGGTGTTTTGGTATTTCTACCCTACAAGGGCATTTCGATAATTCTACCCTACAG
1 GGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAG
* * * * * * *
170689179 AGGTATTTTAGTAATTCTACCTTACAGGGGTATTTTGGTATTTCTACCCTACAG
1 GGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAG
* * * * * *
170689233 GGGCATTTCGGTATTTTTACCCTACAAGGGTATTTCGGCATTTCTACCCTACAA
1 GGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAG
* *
170689287 AGGTATTTCGGTA
1 GGGTATTTTGGTA
170689300 ATTTTGTAAA
Statistics
Matches: 142, Mismatches: 32, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
54 139 0.98
55 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (54 bp):
GGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAG
Found at i:170689318 original size:27 final size:27
Alignment explanation
Indices: 170689288--170689525 Score: 106
Period size: 27 Copynumber: 8.8 Consensus size: 27
170689278 ACCCTACAAA
*
170689288 GGTATTTCGGTAATTTTGTAAATCGAT
1 GGTATTTCGGTAATTTTGTAAATCGAG
*** * *
170689315 GGTAAAACGGTAATTCTGTAAATCAAG
1 GGTATTTCGGTAATTTTGTAAATCGAG
** *
170689342 GGTACTTT-GGTAATTTTACAAGTCGAG
1 GGTA-TTTCGGTAATTTTGTAAATCGAG
** ** **
170689369 GGTATTTCAATAATTTTACAGGTCGAG
1 GGTATTTCGGTAATTTTGTAAATCGAG
* ***
170689396 GGTATTTCAGTAATTTCACAAATC-AGG
1 GGTATTTCGGTAATTTTGTAAATCGA-G
*** ** * *
170689423 GGTATTTTAATAATTTTACAAACCAAG
1 GGTATTTCGGTAATTTTGTAAATCGAG
* ** *
170689450 GGTATTTTGGTAATTTTACAAAT-TAGG
1 GGTATTTCGGTAATTTTGTAAATCGA-G
* * *
170689477 GGTATTTTGGTAATTTTATAAA-CCAGG
1 GGTATTTCGGTAATTTTGTAAATCGA-G
*
170689504 GGTATTTTGGTAATTTTGTAAA
1 GGTATTTCGGTAATTTTGTAAA
170689526 CCAACAGTAT
Statistics
Matches: 173, Mismatches: 32, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
26 5 0.03
27 167 0.97
28 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTGTAAATCGAG
Found at i:170689452 original size:81 final size:81
Alignment explanation
Indices: 170689323--170689627 Score: 299
Period size: 81 Copynumber: 3.8 Consensus size: 81
170689313 ATGGTAAAAC
* * * * * ** * ***
170689323 GGTAATTCTGTAAATCAAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTAC
1 GGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTAC
* * *
170689388 AGGTCGA-GGGTATTTC
66 A-ATCCAGGGGTATTTT
* * * * * *
170689404 AGTAATTTCACAAATCAGGGGTATTTTAATAATTTTACAAACCAAGGGTATTTTGGTAATTTTAC
1 GGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTAC
*
170689469 AAAT-TAGGGGTATTTT
66 -AATCCAGGGGTATTTT
* * ** **
170689485 GGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTGTAAACCAACAGTATTTTGGTAATTTTAC
1 GGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTAC
*
170689550 AAACCAGGGGTATTTT
66 AATCCAGGGGTATTTT
* * *
170689566 GGTGATTTTATAAACCAAGGGTATTTTATTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 GGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTT
170689628 GGTAAACTAA
Statistics
Matches: 182, Mismatches: 39, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
80 3 0.02
81 178 0.98
82 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (81 bp):
GGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTAC
AATCCAGGGGTATTTT
Found at i:170689634 original size:27 final size:27
Alignment explanation
Indices: 170689395--170689627 Score: 286
Period size: 27 Copynumber: 8.6 Consensus size: 27
170689385 TACAGGTCGA
** * *
170689395 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
170689422 GGGTATTTTAATAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
**
170689449 GGGTATTTTGGTAATTTTACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
170689476 GGGTATTTTGGTAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
170689503 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
**
170689530 CAGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
170689557 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
**
170689584 GGGTATTTTATTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
170689611 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
170689628 GGTAAACTAA
Statistics
Matches: 174, Mismatches: 32, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 174 1.00
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:170689634 original size:54 final size:54
Alignment explanation
Indices: 170689341--170689627 Score: 288
Period size: 54 Copynumber: 5.3 Consensus size: 54
170689331 TGTAAATCAA
* * ** * * * ***
170689341 GGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAGGTC-G
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
** * * * * * *
170689394 AGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTAATAATTTTACAAACCAA
1 -GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* ** * * *
170689449 GGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* ** *
170689503 GGGTATTTTGGTAATTTTGTAAACCAACAGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
170689557 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTATTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
170689611 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
170689628 GGTAAACTAA
Statistics
Matches: 197, Mismatches: 35, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
54 197 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:170691638 original size:27 final size:27
Alignment explanation
Indices: 170691057--170691637 Score: 724
Period size: 27 Copynumber: 21.6 Consensus size: 27
170691047 AAAGTACTCC
170691057 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
170691084 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** * *
170691111 CGATTTGTAAAATCACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
170691138 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
170691165 CGATTTGTAAAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
170691192 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
***
170691219 C-AGTTTACAGAATTATTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
170691246 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
170691273 -TAGTTTACAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
170691300 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
170691327 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
170691354 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
170691381 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
170691408 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
170691435 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
170691462 -AATTTACATAATTACCATTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* *
170691487 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
170691514 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
170691541 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
170691568 CGATTTATAGAATTATTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
170691595 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
170691622 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
170691638 TAAAATACCC
Statistics
Matches: 485, Mismatches: 59, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
26 47 0.10
27 434 0.89
28 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:170692977 original size:9 final size:9
Alignment explanation
Indices: 170692965--170693041 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 9
170692955 TTTGATAAAC
170692965 ATGATATGT
1 ATGATATGT
*
170692974 ATGATATGCAC
1 ATGATATG--T
*
170692985 ATAATATGT
1 ATGATATGT
*
170692994 ATGATATGCAC
1 ATGATATG--T
*
170693005 ATGACATGT
1 ATGATATGT
*
170693014 ATGATATGCAC
1 ATGATATG--T
170693025 ATGATATGT
1 ATGATATGT
170693034 ATGATATG
1 ATGATATG
170693042 CACACGAGAT
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
9 30 0.58
11 22 0.42
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:170693008 original size:11 final size:11
Alignment explanation
Indices: 170692974--170693045 Score: 57
Period size: 11 Copynumber: 7.1 Consensus size: 11
170692964 CATGATATGT
170692974 ATGATATGCAC
1 ATGATATGCAC
* *
170692985 ATAATATG--T
1 ATGATATGCAC
170692994 ATGATATGCAC
1 ATGATATGCAC
* *
170693005 ATGACATG--T
1 ATGATATGCAC
170693014 ATGATATGCAC
1 ATGATATGCAC
*
170693025 ATGATATG--T
1 ATGATATGCAC
170693034 ATGATATGCAC
1 ATGATATGCAC
170693045 A
1 A
170693046 CGAGATGTTC
Statistics
Matches: 45, Mismatches: 10, Indels: 12
0.67 0.15 0.18
Matches are distributed among these distances:
9 22 0.49
11 23 0.51
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:170693053 original size:20 final size:20
Alignment explanation
Indices: 170692963--170693045 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
170692953 ATTTTGATAA
170692963 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
170692983 ACATAATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
170693003 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
170693023 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
170693043 ACA
1 ACA
170693046 CGAGATGTTC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Done.