Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 558 of 770
Found at i:173732027 original size:22 final size:24
Alignment explanation
Indices: 173731989--173732033 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 24
173731979 GAACAATGAT
173731989 AGAGAATAATGTAGTTAACCAAAC
1 AGAGAATAATGTAGTTAACCAAAC
173732013 AGAGAAT-A-GTAGTTAACCAAA
1 AGAGAATAATGTAGTTAACCAAA
173732034 ACAAAGTATG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 13 0.62
23 1 0.05
24 7 0.33
ACGTcount: A:0.51, C:0.11, G:0.18, T:0.20
Consensus pattern (24 bp):
AGAGAATAATGTAGTTAACCAAAC
Found at i:173733185 original size:19 final size:18
Alignment explanation
Indices: 173733142--173733196 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
173733132 TTGCTTGCAT
173733142 TCTTTTTCTTTTTCAATC
1 TCTTTTTCTTTTTCAATC
* *
173733160 TCATTTTGCTTTTTCTCACTC
1 TC-TTTTTC-TTTT-TCAATC
*
173733181 TTTTTTTCTTTTTCAA
1 TCTTTTTCTTTTTCAA
173733197 ATTCTTTCTC
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
18 5 0.17
19 9 0.31
20 9 0.31
21 6 0.21
ACGTcount: A:0.11, C:0.22, G:0.02, T:0.65
Consensus pattern (18 bp):
TCTTTTTCTTTTTCAATC
Found at i:173734462 original size:11 final size:11
Alignment explanation
Indices: 173734446--173734490 Score: 81
Period size: 11 Copynumber: 4.0 Consensus size: 11
173734436 TTTTATACAC
173734446 GAATTTTTTTT
1 GAATTTTTTTT
173734457 GAATTTTTTTT
1 GAATTTTTTTT
173734468 GAATTTTTTTT
1 GAATTTTTTTT
173734479 GAATTTTGTTTT
1 GAATTTT-TTTT
173734491 CAAAACTCAC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 29 0.88
12 4 0.12
ACGTcount: A:0.18, C:0.00, G:0.11, T:0.71
Consensus pattern (11 bp):
GAATTTTTTTT
Found at i:173735146 original size:29 final size:29
Alignment explanation
Indices: 173735113--173735175 Score: 87
Period size: 27 Copynumber: 2.2 Consensus size: 29
173735103 TAACACTCTA
173735113 ATTAACATGTTCAGATTAAATA-CATATTT
1 ATTAACATGTTCAGATTAAA-AGCATATTT
173735142 ATT-A-ATGTTCAGATTAAAAGCATATTT
1 ATTAACATGTTCAGATTAAAAGCATATTT
*
173735169 TTTAACA
1 ATTAACA
173735176 CTTATTTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
26 1 0.03
27 23 0.77
28 2 0.07
29 4 0.13
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (29 bp):
ATTAACATGTTCAGATTAAAAGCATATTT
Found at i:173738077 original size:71 final size:71
Alignment explanation
Indices: 173737993--173738156 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
173737983 CGATTTGTCT
173737993 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
173738058 CTTTCA
66 CTTTCA
* *
173738064 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
173738129 CTTTCA
66 CTTTCA
173738135 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
173738157 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:173738194 original size:71 final size:70
Alignment explanation
Indices: 173737993--173738190 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
173737983 CGATTTGTCT
* * * * *
173737993 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
173738058 CTTTCA
65 CTTTCA
* * * *
173738064 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
173738129 CTTTCA
65 CTTTCA
* *
173738135 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
173738191 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:173757428 original size:26 final size:26
Alignment explanation
Indices: 173757398--173757447 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
173757388 TCATAATTAA
*
173757398 CCCTAGGGGTAAAATGGTCATTTTGC
1 CCCTAGGGGTAAAATGGTAATTTTGC
*
173757424 CCCTAGGGGTATAATGGTAATTTT
1 CCCTAGGGGTAAAATGGTAATTTT
173757448 CCATACTTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (26 bp):
CCCTAGGGGTAAAATGGTAATTTTGC
Found at i:173764735 original size:40 final size:40
Alignment explanation
Indices: 173764680--173764784 Score: 158
Period size: 40 Copynumber: 2.6 Consensus size: 40
173764670 CGGATGATAA
*
173764680 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
*
173764720 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* *
173764760 CCGGGCTAAGTCCTGAACGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
173764785 AGCAAGTAGT
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
40 59 0.98
41 1 0.02
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:173764799 original size:40 final size:39
Alignment explanation
Indices: 173764680--173764816 Score: 143
Period size: 40 Copynumber: 3.5 Consensus size: 39
173764670 CGGATGATAA
* *
173764680 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ATTATA-T
* *
173764720 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TATTATAT
* * *
173764760 CCGGGCTAAGTCCTGAACGCATTTGAGCAAGTAGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-TTATAT
* *
173764800 TC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
173764817 ATGCTTGGGT
Statistics
Matches: 84, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
39 14 0.17
40 68 0.81
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTATTATAT
Found at i:173765084 original size:22 final size:21
Alignment explanation
Indices: 173765043--173765086 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
173765033 GAATGTGCAT
173765043 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
173765065 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
173765087 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:173770710 original size:40 final size:40
Alignment explanation
Indices: 173770546--173770710 Score: 165
Period size: 40 Copynumber: 4.1 Consensus size: 40
173770536 CGGAGTTTAA
** *
173770546 CCGGATATAGCT-ACTCGTTCAAATGCCTTTGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTTGGGACTTAGC
* * * *
173770586 CCGGTTATAGTGACTCGCACAAATGCCTTAGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC
* * *
173770626 CCGGATTTAGTAACTCGCACAAATGCC-TTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTTGGGA-CTTAGC
* * *
173770666 CCGGATATAATCACTTAGCACAAA-GCCTTTGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTTGGGACTTAGC
173770706 CCGGA
1 CCGGA
173770711 CATCATTTGA
Statistics
Matches: 102, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
39 5 0.05
40 84 0.82
41 13 0.13
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC
Found at i:173781494 original size:40 final size:40
Alignment explanation
Indices: 173781428--173781594 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
173781418 AAATTGAATG
* * *
173781428 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
173781467 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
173781507 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
173781547 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
173781587 ATATCCGG
1 ATATCCGG
173781595 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:173787823 original size:7 final size:7
Alignment explanation
Indices: 173787811--173800729 Score: 25087
Period size: 7 Copynumber: 1854.3 Consensus size: 7
173787801 NNNNNNNNNN
173787811 CCTAAAC
1 CCTAAAC
173787818 CCTAAAC
1 CCTAAAC
173787825 CCTAAAAC
1 CCT-AAAC
173787833 CCTAAAC
1 CCTAAAC
173787840 CCTAAAC
1 CCTAAAC
173787847 CCTAAAC
1 CCTAAAC
173787854 CCTAAAC
1 CCTAAAC
173787861 CCTAAAC
1 CCTAAAC
*
173787868 CCTAAAA
1 CCTAAAC
173787875 CCTAAA-
1 CCTAAAC
173787881 CCTAAAC
1 CCTAAAC
173787888 CCTAAAC
1 CCTAAAC
173787895 CCT-AAC
1 CCTAAAC
173787901 CCT-AAC
1 CCTAAAC
173787907 CCT-AAC
1 CCTAAAC
173787913 CCTAAAC
1 CCTAAAC
173787920 CCTAAAC
1 CCTAAAC
173787927 CCTAAAC
1 CCTAAAC
173787934 CCT-AAC
1 CCTAAAC
173787940 CCTAAAAC
1 CCT-AAAC
173787948 CCTAAAAC
1 CCT-AAAC
173787956 CCTAAAC
1 CCTAAAC
173787963 CCTAAAC
1 CCTAAAC
173787970 CCTAAAC
1 CCTAAAC
173787977 CCTAAAC
1 CCTAAAC
173787984 CCTAAAC
1 CCTAAAC
173787991 CCTAAAC
1 CCTAAAC
173787998 CCTAAAC
1 CCTAAAC
173788005 CCTAAAC
1 CCTAAAC
173788012 CCTAAAC
1 CCTAAAC
173788019 CCTAAAC
1 CCTAAAC
173788026 CCTAAAC
1 CCTAAAC
173788033 CCTAAAC
1 CCTAAAC
173788040 CCTAAAC
1 CCTAAAC
173788047 CC-AAAC
1 CCTAAAC
173788053 CCTAAAC
1 CCTAAAC
173788060 CCTAAAC
1 CCTAAAC
173788067 CCTAAAC
1 CCTAAAC
173788074 CCTAAA-
1 CCTAAAC
173788080 CC-AAAC
1 CCTAAAC
173788086 CCTAAAC
1 CCTAAAC
173788093 CCTAAAC
1 CCTAAAC
173788100 CCTAAAC
1 CCTAAAC
173788107 CCTAAAC
1 CCTAAAC
173788114 CCTAAAC
1 CCTAAAC
173788121 CCTAAAC
1 CCTAAAC
173788128 CCTAAAC
1 CCTAAAC
173788135 CCTAAA-
1 CCTAAAC
173788141 CCTAAAC
1 CCTAAAC
173788148 CCTAAAC
1 CCTAAAC
173788155 CCTAAA-
1 CCTAAAC
173788161 CCTAAAC
1 CCTAAAC
173788168 CC--AAC
1 CCTAAAC
173788173 CCTAAAC
1 CCTAAAC
173788180 CCTAAAC
1 CCTAAAC
173788187 CCTAAAC
1 CCTAAAC
173788194 CCTAAAC
1 CCTAAAC
173788201 CCTAAAC
1 CCTAAAC
173788208 CCTAAAC
1 CCTAAAC
173788215 CCTAAAC
1 CCTAAAC
173788222 CCTAAAC
1 CCTAAAC
173788229 CCTAAA-
1 CCTAAAC
173788235 CCTAAAC
1 CCTAAAC
173788242 CCTAAAC
1 CCTAAAC
173788249 CCTAAAC
1 CCTAAAC
173788256 CCTAAAC
1 CCTAAAC
173788263 CCTAAAC
1 CCTAAAC
173788270 CCTAAAC
1 CCTAAAC
173788277 CCTAAAC
1 CCTAAAC
173788284 CCTAAAC
1 CCTAAAC
173788291 CCTAAAC
1 CCTAAAC
173788298 CCTAAAC
1 CCTAAAC
173788305 CCTAAAC
1 CCTAAAC
173788312 CCTAAAC
1 CCTAAAC
173788319 CC-AAAC
1 CCTAAAC
173788325 CCTAAAC
1 CCTAAAC
173788332 CCTAAAC
1 CCTAAAC
173788339 CCTAAAC
1 CCTAAAC
173788346 CCTAAAC
1 CCTAAAC
173788353 CCTAAAC
1 CCTAAAC
173788360 CCTAAAC
1 CCTAAAC
173788367 CCTAAAC
1 CCTAAAC
173788374 CCTAAAC
1 CCTAAAC
173788381 CCTAAAC
1 CCTAAAC
173788388 CCTAAA-
1 CCTAAAC
173788394 CCTAAAC
1 CCTAAAC
173788401 CCTAAAC
1 CCTAAAC
173788408 CCTAAAC
1 CCTAAAC
173788415 CCTAAAC
1 CCTAAAC
173788422 CCTAAAC
1 CCTAAAC
173788429 CCTAAAC
1 CCTAAAC
173788436 CCTAAAC
1 CCTAAAC
173788443 CC-AAAC
1 CCTAAAC
173788449 CCTAAAC
1 CCTAAAC
173788456 CCTAAAC
1 CCTAAAC
173788463 CCTAAAC
1 CCTAAAC
173788470 CCTAAAC
1 CCTAAAC
173788477 CCTAAAC
1 CCTAAAC
173788484 CCTAAAC
1 CCTAAAC
173788491 CCTAAAC
1 CCTAAAC
173788498 CCTAAAC
1 CCTAAAC
173788505 CCTAAAC
1 CCTAAAC
173788512 CCTAAAC
1 CCTAAAC
173788519 CCTAAAC
1 CCTAAAC
173788526 CCTAAAC
1 CCTAAAC
173788533 CCT-AA-
1 CCTAAAC
173788538 CCTAAAC
1 CCTAAAC
173788545 CCTAAAC
1 CCTAAAC
173788552 CCTAAAC
1 CCTAAAC
173788559 CCTAAAC
1 CCTAAAC
173788566 CCTAAAC
1 CCTAAAC
173788573 CCTAAAAC
1 CCT-AAAC
173788581 CCTAAAC
1 CCTAAAC
173788588 CCTAAAC
1 CCTAAAC
173788595 CCTAAAC
1 CCTAAAC
173788602 CCTAAAC
1 CCTAAAC
173788609 CCTAAA-
1 CCTAAAC
173788615 CCTAAA-
1 CCTAAAC
173788621 CCTAAAC
1 CCTAAAC
173788628 CCTAAA-
1 CCTAAAC
173788634 CCTAAAC
1 CCTAAAC
173788641 CCTAAAC
1 CCTAAAC
173788648 CCTAAAC
1 CCTAAAC
173788655 CCTAAAC
1 CCTAAAC
173788662 CCTAAAC
1 CCTAAAC
173788669 CCTAAAC
1 CCTAAAC
173788676 CCTAAAC
1 CCTAAAC
173788683 CCTAAAC
1 CCTAAAC
173788690 CCTAAAC
1 CCTAAAC
173788697 CCTAAAC
1 CCTAAAC
173788704 CCTAAAC
1 CCTAAAC
173788711 CCTAAAC
1 CCTAAAC
173788718 CCTAAAC
1 CCTAAAC
173788725 CCTAAAC
1 CCTAAAC
173788732 CCTAAA-
1 CCTAAAC
173788738 CCT-AAC
1 CCTAAAC
173788744 CC-AAAC
1 CCTAAAC
173788750 CCTAAAC
1 CCTAAAC
173788757 CCTAAAC
1 CCTAAAC
173788764 CCTAAAC
1 CCTAAAC
173788771 CCTAAAC
1 CCTAAAC
173788778 CCTAAAC
1 CCTAAAC
173788785 CCTAAAC
1 CCTAAAC
173788792 CCTAAAC
1 CCTAAAC
173788799 CCTAAAC
1 CCTAAAC
173788806 CCTAAAC
1 CCTAAAC
173788813 CCTAAAC
1 CCTAAAC
173788820 CCTAAAC
1 CCTAAAC
173788827 CCTAAAC
1 CCTAAAC
173788834 CCTAAAC
1 CCTAAAC
173788841 CCTAAA-
1 CCTAAAC
173788847 -CT-AAC
1 CCTAAAC
173788852 CCTAAAC
1 CCTAAAC
173788859 CCTAAA-
1 CCTAAAC
173788865 CCTAAAC
1 CCTAAAC
173788872 CCTAAAC
1 CCTAAAC
173788879 CCTAAAC
1 CCTAAAC
173788886 CCTAAAC
1 CCTAAAC
173788893 CCTAAAC
1 CCTAAAC
173788900 CCTAAAC
1 CCTAAAC
173788907 CCTAAAC
1 CCTAAAC
173788914 CCTAAAC
1 CCTAAAC
173788921 CCTAAAC
1 CCTAAAC
173788928 CCTAAA-
1 CCTAAAC
173788934 CCTAAAC
1 CCTAAAC
173788941 CCTAAAC
1 CCTAAAC
173788948 CCTAAAC
1 CCTAAAC
173788955 CCTAAAC
1 CCTAAAC
173788962 CCTAAAAC
1 CCT-AAAC
173788970 CCTAAAC
1 CCTAAAC
173788977 CCTAAAC
1 CCTAAAC
173788984 CCTAAAC
1 CCTAAAC
173788991 CCTAAAC
1 CCTAAAC
173788998 CCTAAAC
1 CCTAAAC
173789005 CCTAAA-
1 CCTAAAC
173789011 CCTAAAC
1 CCTAAAC
173789018 CCTAAAAC
1 CCT-AAAC
173789026 CCTAAAC
1 CCTAAAC
173789033 CC--AAC
1 CCTAAAC
173789038 CCTAAAC
1 CCTAAAC
173789045 CCTAAAC
1 CCTAAAC
173789052 CCTAAAC
1 CCTAAAC
173789059 CCTAAAC
1 CCTAAAC
173789066 CCTAAAC
1 CCTAAAC
173789073 CCTAAAC
1 CCTAAAC
173789080 CCTAAAC
1 CCTAAAC
173789087 CCTAAAC
1 CCTAAAC
173789094 CCTAAAAC
1 CCT-AAAC
173789102 CCTAAAC
1 CCTAAAC
173789109 CCTAAAC
1 CCTAAAC
173789116 CCTAAAC
1 CCTAAAC
173789123 CCTAAAC
1 CCTAAAC
173789130 CCTAAAC
1 CCTAAAC
173789137 CCTAAAAC
1 CCT-AAAC
173789145 CCT-AAC
1 CCTAAAC
173789151 CCT-AAC
1 CCTAAAC
173789157 CCTAAAC
1 CCTAAAC
173789164 CCTAAAC
1 CCTAAAC
173789171 CCTAAAC
1 CCTAAAC
173789178 CCT-AAC
1 CCTAAAC
173789184 CCTAAAC
1 CCTAAAC
173789191 CCT-AAC
1 CCTAAAC
173789197 CCTAAAC
1 CCTAAAC
173789204 CCTAAAC
1 CCTAAAC
173789211 CCTAAAC
1 CCTAAAC
173789218 CC-AAA-
1 CCTAAAC
173789223 CCTAAAAC
1 CCT-AAAC
173789231 CCTAAAC
1 CCTAAAC
173789238 CCTAAAC
1 CCTAAAC
173789245 CCTAAAC
1 CCTAAAC
173789252 CCTAAAAC
1 CCT-AAAC
173789260 CCTAAAC
1 CCTAAAC
173789267 CCTAAAC
1 CCTAAAC
173789274 CCTAAAC
1 CCTAAAC
173789281 CCTAAAC
1 CCTAAAC
173789288 CCTAAAC
1 CCTAAAC
173789295 CCTAAAC
1 CCTAAAC
173789302 CCTAAAC
1 CCTAAAC
173789309 CCTAAAC
1 CCTAAAC
173789316 CCTAAAC
1 CCTAAAC
173789323 CCTAAACCC
1 CCTAAA--C
173789332 CCT-AAC
1 CCTAAAC
173789338 CCTAAAC
1 CCTAAAC
173789345 CCTAAAC
1 CCTAAAC
173789352 CCTAAAC
1 CCTAAAC
173789359 CCT-AA-
1 CCTAAAC
173789364 CCTAAAC
1 CCTAAAC
173789371 CCTAAAC
1 CCTAAAC
173789378 CCTAAAC
1 CCTAAAC
173789385 CCTAAAC
1 CCTAAAC
173789392 CCTAAAC
1 CCTAAAC
173789399 CCTAAAC
1 CCTAAAC
173789406 CCTAAAC
1 CCTAAAC
173789413 CCTAAAC
1 CCTAAAC
173789420 CCTAAAC
1 CCTAAAC
173789427 CCTAAA-
1 CCTAAAC
173789433 CCTAAAC
1 CCTAAAC
173789440 CCTAAAC
1 CCTAAAC
173789447 CCTAAAC
1 CCTAAAC
173789454 CCTAAAC
1 CCTAAAC
173789461 CCTAAAC
1 CCTAAAC
173789468 CCTAAAC
1 CCTAAAC
173789475 CCTAAAC
1 CCTAAAC
173789482 CCTAAAC
1 CCTAAAC
173789489 CCTAAAC
1 CCTAAAC
173789496 CCTAAAAC
1 CCT-AAAC
173789504 CCTAAAC
1 CCTAAAC
173789511 CCTAAAC
1 CCTAAAC
173789518 CCT-AAC
1 CCTAAAC
173789524 CCTAAAC
1 CCTAAAC
173789531 CCTAAAC
1 CCTAAAC
173789538 CCTAAAC
1 CCTAAAC
173789545 CCTAAAC
1 CCTAAAC
173789552 CCT-AAC
1 CCTAAAC
173789558 CCTAAAC
1 CCTAAAC
173789565 CCT-AAC
1 CCTAAAC
173789571 CCTAAAC
1 CCTAAAC
173789578 CCTAAAC
1 CCTAAAC
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173797217 CCTAAAC
1 CCTAAAC
173797224 CCTAAAC
1 CCTAAAC
173797231 CCTAAAC
1 CCTAAAC
173797238 CCTAAAC
1 CCTAAAC
173797245 CCTAAAC
1 CCTAAAC
173797252 CCTAAAC
1 CCTAAAC
173797259 CCTAAAC
1 CCTAAAC
173797266 CCTAAAC
1 CCTAAAC
173797273 CCTAAAC
1 CCTAAAC
173797280 CCTAAAC
1 CCTAAAC
173797287 CCTAAAC
1 CCTAAAC
173797294 CCTAAAC
1 CCTAAAC
173797301 CCTAAAC
1 CCTAAAC
173797308 CCTAAAC
1 CCTAAAC
173797315 CCTAAAC
1 CCTAAAC
173797322 CCTAAAC
1 CCTAAAC
173797329 CCTAAAC
1 CCTAAAC
173797336 CCTAAAC
1 CCTAAAC
173797343 CCTAAAC
1 CCTAAAC
173797350 CCTAAAC
1 CCTAAAC
173797357 CCTAAAC
1 CCTAAAC
173797364 CCTAAAC
1 CCTAAAC
173797371 CCTAAAC
1 CCTAAAC
173797378 CCTAAAC
1 CCTAAAC
173797385 CCTAAAC
1 CCTAAAC
173797392 CCTAAAC
1 CCTAAAC
173797399 CCTAAAC
1 CCTAAAC
173797406 CCTAAAC
1 CCTAAAC
173797413 CCTAAAC
1 CCTAAAC
173797420 CCTAAAC
1 CCTAAAC
173797427 CCTAAAC
1 CCTAAAC
173797434 CCTAAAC
1 CCTAAAC
173797441 CCTAAAC
1 CCTAAAC
173797448 CCTAAAC
1 CCTAAAC
173797455 CCTAAAC
1 CCTAAAC
173797462 CCTAAAC
1 CCTAAAC
173797469 CCTAAAC
1 CCTAAAC
173797476 CCTAAAC
1 CCTAAAC
173797483 CCTAAAC
1 CCTAAAC
173797490 CCTAAAC
1 CCTAAAC
173797497 CCTAAAC
1 CCTAAAC
173797504 CCTAAAC
1 CCTAAAC
173797511 CCTAAAC
1 CCTAAAC
173797518 CCTAAAC
1 CCTAAAC
173797525 CCTAAAC
1 CCTAAAC
173797532 CCTAAAC
1 CCTAAAC
173797539 CCTAAAC
1 CCTAAAC
173797546 CCTAAAC
1 CCTAAAC
173797553 CCTAAAC
1 CCTAAAC
173797560 CCTAAAC
1 CCTAAAC
173797567 CCTAAAC
1 CCTAAAC
173797574 CCTAAAC
1 CCTAAAC
173797581 CCTAAAC
1 CCTAAAC
173797588 CCTAAAC
1 CCTAAAC
173797595 CCTAAAC
1 CCTAAAC
173797602 CCTAAAC
1 CCTAAAC
173797609 CCTAAAC
1 CCTAAAC
173797616 CCTAAAC
1 CCTAAAC
173797623 CCTAAAC
1 CCTAAAC
173797630 CCTAAAC
1 CCTAAAC
173797637 CCTAAAC
1 CCTAAAC
173797644 CCTAAAC
1 CCTAAAC
173797651 CCTAAAC
1 CCTAAAC
173797658 CCTAAAC
1 CCTAAAC
173797665 CCTAAAC
1 CCTAAAC
173797672 CCTAAAC
1 CCTAAAC
173797679 CCTAAAC
1 CCTAAAC
173797686 CCTAAAC
1 CCTAAAC
173797693 CCTAAAC
1 CCTAAAC
173797700 CCTAAAC
1 CCTAAAC
173797707 CCTAAAC
1 CCTAAAC
173797714 CCTAAAC
1 CCTAAAC
173797721 CCTAAAC
1 CCTAAAC
173797728 CCTAAAC
1 CCTAAAC
173797735 CCTAAAC
1 CCTAAAC
173797742 CCTAAAC
1 CCTAAAC
173797749 CCTAAAC
1 CCTAAAC
173797756 CCTAAAC
1 CCTAAAC
173797763 CCTAAAC
1 CCTAAAC
173797770 CCTAAAC
1 CCTAAAC
173797777 CCTAAAC
1 CCTAAAC
173797784 CCTAAAC
1 CCTAAAC
173797791 CCTAAAC
1 CCTAAAC
173797798 CCTAAAC
1 CCTAAAC
173797805 CCTAAAC
1 CCTAAAC
173797812 CCTAAAC
1 CCTAAAC
173797819 CCTAAAC
1 CCTAAAC
173797826 CCTAAAC
1 CCTAAAC
173797833 CCTAAAC
1 CCTAAAC
173797840 CCTAAAC
1 CCTAAAC
173797847 CCTAAAC
1 CCTAAAC
173797854 CCTAAAC
1 CCTAAAC
173797861 CCTAAAC
1 CCTAAAC
173797868 CCTAAAC
1 CCTAAAC
173797875 CCTAAAC
1 CCTAAAC
173797882 CCTAAAC
1 CCTAAAC
173797889 CCTAAAC
1 CCTAAAC
173797896 CCTAAAC
1 CCTAAAC
173797903 CCTAAAC
1 CCTAAAC
173797910 CCTAAAC
1 CCTAAAC
173797917 CCTAAAC
1 CCTAAAC
173797924 CCTAAAC
1 CCTAAAC
173797931 CCTAAAC
1 CCTAAAC
173797938 CCTAAAC
1 CCTAAAC
173797945 CCTAAAC
1 CCTAAAC
173797952 CCTAAAC
1 CCTAAAC
173797959 CCTAAAC
1 CCTAAAC
173797966 CCTAAAC
1 CCTAAAC
173797973 CCTAAAC
1 CCTAAAC
173797980 CCTAAAC
1 CCTAAAC
173797987 CCTAAAC
1 CCTAAAC
173797994 CCTAAAC
1 CCTAAAC
173798001 CCTAAAC
1 CCTAAAC
173798008 CCTAAAC
1 CCTAAAC
173798015 CCTAAAC
1 CCTAAAC
173798022 CCTAAAC
1 CCTAAAC
173798029 CCTAAAC
1 CCTAAAC
173798036 CCTAAAC
1 CCTAAAC
173798043 CCTAAAC
1 CCTAAAC
173798050 CCTAAAC
1 CCTAAAC
173798057 CCTAAAC
1 CCTAAAC
173798064 CCTAAAC
1 CCTAAAC
173798071 CCTAAAC
1 CCTAAAC
173798078 CCTAAAC
1 CCTAAAC
173798085 CCTAAAC
1 CCTAAAC
173798092 CCTAAAC
1 CCTAAAC
173798099 CCTAAAC
1 CCTAAAC
173798106 CCTAAAC
1 CCTAAAC
173798113 CCTAAAC
1 CCTAAAC
173798120 CCTAAAC
1 CCTAAAC
173798127 CCTAAAC
1 CCTAAAC
173798134 CCTAAAC
1 CCTAAAC
173798141 CCTAAAC
1 CCTAAAC
173798148 CCTAAAC
1 CCTAAAC
173798155 CCTAAAC
1 CCTAAAC
173798162 CCTAAAC
1 CCTAAAC
173798169 CCTAAAC
1 CCTAAAC
173798176 CCTAAAC
1 CCTAAAC
173798183 CCTAAAC
1 CCTAAAC
173798190 CCTAAAC
1 CCTAAAC
173798197 CCTAAAC
1 CCTAAAC
173798204 CCTAAAC
1 CCTAAAC
173798211 CCTAAAC
1 CCTAAAC
173798218 CCTAAAC
1 CCTAAAC
173798225 CCTAAAC
1 CCTAAAC
173798232 CCTAAAC
1 CCTAAAC
173798239 CCTAAAC
1 CCTAAAC
173798246 CCTAAAC
1 CCTAAAC
173798253 CCTAAAC
1 CCTAAAC
173798260 CCTAAAC
1 CCTAAAC
173798267 CCTAAAC
1 CCTAAAC
173798274 CCTAAAC
1 CCTAAAC
173798281 CCTAAAC
1 CCTAAAC
173798288 CCTAAAC
1 CCTAAAC
173798295 CCTAAAC
1 CCTAAAC
173798302 CCTAAAC
1 CCTAAAC
173798309 CCTAAAC
1 CCTAAAC
173798316 CCTAAAC
1 CCTAAAC
173798323 CCTAAAC
1 CCTAAAC
173798330 CCTAAAC
1 CCTAAAC
173798337 CCTAAAC
1 CCTAAAC
173798344 CCTAAAC
1 CCTAAAC
173798351 CCTAAAC
1 CCTAAAC
173798358 CCTAAAC
1 CCTAAAC
173798365 CCTAAAC
1 CCTAAAC
173798372 CCTAAAC
1 CCTAAAC
173798379 CCTAAAC
1 CCTAAAC
173798386 CCTAAAC
1 CCTAAAC
173798393 CCTAAAC
1 CCTAAAC
173798400 CCTAAAC
1 CCTAAAC
173798407 CCTAAAC
1 CCTAAAC
173798414 CCTAAAC
1 CCTAAAC
173798421 CCTAAAC
1 CCTAAAC
173798428 CCTAAAC
1 CCTAAAC
173798435 CCTAAAC
1 CCTAAAC
173798442 CCTAAAC
1 CCTAAAC
173798449 CCTAAAC
1 CCTAAAC
173798456 CCTAAAC
1 CCTAAAC
173798463 CCTAAAC
1 CCTAAAC
173798470 CCTAAAC
1 CCTAAAC
173798477 CCTAAAC
1 CCTAAAC
173798484 CCTAAAC
1 CCTAAAC
173798491 CCTAAAC
1 CCTAAAC
173798498 CCTAAAC
1 CCTAAAC
173798505 CCTAAAC
1 CCTAAAC
173798512 CCTAAAC
1 CCTAAAC
173798519 CCTAAAC
1 CCTAAAC
173798526 CCTAAAC
1 CCTAAAC
173798533 CCTAAAC
1 CCTAAAC
173798540 CCTAAAC
1 CCTAAAC
173798547 CCTAAAC
1 CCTAAAC
173798554 CCTAAAC
1 CCTAAAC
173798561 CCTAAAC
1 CCTAAAC
173798568 CCTAAAC
1 CCTAAAC
173798575 CCTAAAC
1 CCTAAAC
173798582 CCTAAAC
1 CCTAAAC
173798589 CCTAAAC
1 CCTAAAC
173798596 CCTAAAC
1 CCTAAAC
173798603 CCTAAAC
1 CCTAAAC
173798610 CCTAAAC
1 CCTAAAC
173798617 CCTAAAC
1 CCTAAAC
173798624 CCTAAAC
1 CCTAAAC
173798631 CCTAAAC
1 CCTAAAC
173798638 CCTAAAC
1 CCTAAAC
173798645 CCTAAAC
1 CCTAAAC
173798652 CCTAAAC
1 CCTAAAC
173798659 CCTAAAC
1 CCTAAAC
173798666 CCTAAAC
1 CCTAAAC
173798673 CCTAAAC
1 CCTAAAC
173798680 CCTAAAC
1 CCTAAAC
173798687 CCTAAAC
1 CCTAAAC
173798694 CCTAAAC
1 CCTAAAC
173798701 CCTAAAC
1 CCTAAAC
173798708 CCTAAAC
1 CCTAAAC
173798715 CCTAAAC
1 CCTAAAC
173798722 CCTAAAC
1 CCTAAAC
173798729 CCTAAAC
1 CCTAAAC
173798736 CCTAAAC
1 CCTAAAC
173798743 CCTAAAC
1 CCTAAAC
173798750 CCTAAAC
1 CCTAAAC
173798757 CCTAAAC
1 CCTAAAC
173798764 CCTAAAC
1 CCTAAAC
173798771 CCTAAAC
1 CCTAAAC
173798778 CCTAAAC
1 CCTAAAC
173798785 CCTAAAC
1 CCTAAAC
173798792 CCTAAAC
1 CCTAAAC
173798799 CCTAAAC
1 CCTAAAC
173798806 CCTAAAC
1 CCTAAAC
173798813 CCTAAAC
1 CCTAAAC
173798820 CCTAAAC
1 CCTAAAC
173798827 CCTAAAC
1 CCTAAAC
173798834 CCTAAAC
1 CCTAAAC
173798841 CCTAAAC
1 CCTAAAC
173798848 CCTAAAC
1 CCTAAAC
173798855 CCTAAAC
1 CCTAAAC
173798862 CCTAAAC
1 CCTAAAC
173798869 CCTAAAC
1 CCTAAAC
173798876 CCTAAAC
1 CCTAAAC
173798883 CCTAAAC
1 CCTAAAC
173798890 CCTAAAC
1 CCTAAAC
173798897 CCTAAAC
1 CCTAAAC
173798904 CCTAAAC
1 CCTAAAC
173798911 CCTAAAC
1 CCTAAAC
173798918 CCTAAAC
1 CCTAAAC
173798925 CCTAAAC
1 CCTAAAC
173798932 CCTAAAC
1 CCTAAAC
173798939 CCTAAAC
1 CCTAAAC
173798946 CCTAAAC
1 CCTAAAC
173798953 CCTAAAC
1 CCTAAAC
173798960 CCTAAAC
1 CCTAAAC
173798967 CCTAAAC
1 CCTAAAC
173798974 CCTAAAC
1 CCTAAAC
173798981 CCTAAAC
1 CCTAAAC
173798988 CCTAAAC
1 CCTAAAC
173798995 CCTAAAC
1 CCTAAAC
173799002 CCTAAAC
1 CCTAAAC
173799009 CCTAAAC
1 CCTAAAC
173799016 CCTAAAC
1 CCTAAAC
173799023 CCTAAAC
1 CCTAAAC
173799030 CCTAAAC
1 CCTAAAC
173799037 CCTAAAC
1 CCTAAAC
173799044 CCTAAAC
1 CCTAAAC
173799051 CCTAAAC
1 CCTAAAC
173799058 CCTAAAC
1 CCTAAAC
173799065 CCTAAAC
1 CCTAAAC
173799072 CCTAAAC
1 CCTAAAC
173799079 CCTAAAC
1 CCTAAAC
173799086 CCTAAAC
1 CCTAAAC
173799093 CCTAAAC
1 CCTAAAC
173799100 CCTAAAC
1 CCTAAAC
173799107 CCTAAAC
1 CCTAAAC
173799114 CCTAAAC
1 CCTAAAC
173799121 CCTAAAC
1 CCTAAAC
173799128 CCTAAAC
1 CCTAAAC
173799135 CCTAAAC
1 CCTAAAC
173799142 CCTAAAC
1 CCTAAAC
173799149 CCTAAAC
1 CCTAAAC
173799156 CCTAAAC
1 CCTAAAC
173799163 CCTAAAC
1 CCTAAAC
173799170 CCTAAAC
1 CCTAAAC
173799177 CCTAAAC
1 CCTAAAC
173799184 CCTAAAC
1 CCTAAAC
173799191 CCTAAAC
1 CCTAAAC
173799198 CCTAAAC
1 CCTAAAC
173799205 CCTAAAC
1 CCTAAAC
173799212 CCTAAAC
1 CCTAAAC
173799219 CCTAAAC
1 CCTAAAC
173799226 CCTAAAC
1 CCTAAAC
173799233 CCTAAAC
1 CCTAAAC
173799240 CCTAAAC
1 CCTAAAC
173799247 CCTAAAC
1 CCTAAAC
173799254 CCTAAAC
1 CCTAAAC
173799261 CCTAAAC
1 CCTAAAC
173799268 CCTAAAC
1 CCTAAAC
173799275 CCTAAAC
1 CCTAAAC
173799282 CCTAAAC
1 CCTAAAC
173799289 CCTAAAC
1 CCTAAAC
173799296 CCTAAAC
1 CCTAAAC
173799303 CCTAAAC
1 CCTAAAC
173799310 CCTAAAC
1 CCTAAAC
173799317 CCTAAAC
1 CCTAAAC
173799324 CCTAAAC
1 CCTAAAC
173799331 CCTAAAC
1 CCTAAAC
173799338 CCTAAAC
1 CCTAAAC
173799345 CCTAAAC
1 CCTAAAC
173799352 CCTAAAC
1 CCTAAAC
173799359 CCTAAAC
1 CCTAAAC
173799366 CCTAAAC
1 CCTAAAC
173799373 CCTAAAC
1 CCTAAAC
173799380 CCTAAAC
1 CCTAAAC
173799387 CCTAAAC
1 CCTAAAC
173799394 CCTAAAC
1 CCTAAAC
173799401 CCTAAAC
1 CCTAAAC
173799408 CCTAAAC
1 CCTAAAC
173799415 CCTAAAC
1 CCTAAAC
173799422 CCTAAAC
1 CCTAAAC
173799429 CCTAAAC
1 CCTAAAC
173799436 CCTAAAC
1 CCTAAAC
173799443 CCTAAAC
1 CCTAAAC
173799450 CCTAAAC
1 CCTAAAC
173799457 CCTAAAC
1 CCTAAAC
173799464 CCTAAAC
1 CCTAAAC
173799471 CCTAAAC
1 CCTAAAC
173799478 CCTAAAC
1 CCTAAAC
173799485 CCTAAAC
1 CCTAAAC
173799492 CCTAAAC
1 CCTAAAC
173799499 CCTAAAC
1 CCTAAAC
173799506 CCTAAAC
1 CCTAAAC
173799513 CCTAAAC
1 CCTAAAC
173799520 CCTAAAC
1 CCTAAAC
173799527 CCTAAAC
1 CCTAAAC
173799534 CCTAAAC
1 CCTAAAC
173799541 CCTAAAC
1 CCTAAAC
173799548 CCTAAAC
1 CCTAAAC
173799555 CCTAAAC
1 CCTAAAC
173799562 CCTAAAC
1 CCTAAAC
173799569 CCTAAAC
1 CCTAAAC
173799576 CCTAAAC
1 CCTAAAC
173799583 CCTAAAC
1 CCTAAAC
173799590 CCTAAAC
1 CCTAAAC
173799597 CCTAAAC
1 CCTAAAC
173799604 CCTAAAC
1 CCTAAAC
173799611 CCTAAAC
1 CCTAAAC
173799618 CCTAAAC
1 CCTAAAC
173799625 CCTAAAC
1 CCTAAAC
173799632 CCTAAAC
1 CCTAAAC
173799639 CCTAAAC
1 CCTAAAC
173799646 CCTAAAC
1 CCTAAAC
173799653 CCTAAAC
1 CCTAAAC
173799660 CCTAAAC
1 CCTAAAC
173799667 CCTAAAC
1 CCTAAAC
173799674 CCTAAAC
1 CCTAAAC
173799681 CCTAAAC
1 CCTAAAC
173799688 CCTAAAC
1 CCTAAAC
173799695 CCTAAAC
1 CCTAAAC
173799702 CCTAAAC
1 CCTAAAC
173799709 CCTAAAC
1 CCTAAAC
173799716 CCTAAAC
1 CCTAAAC
173799723 CCTAAAC
1 CCTAAAC
173799730 CCTAAAC
1 CCTAAAC
173799737 CCTAAAC
1 CCTAAAC
173799744 CCTAAAC
1 CCTAAAC
173799751 CCTAAAC
1 CCTAAAC
173799758 CCTAAAC
1 CCTAAAC
173799765 CCTAAAC
1 CCTAAAC
173799772 CCTAAAC
1 CCTAAAC
173799779 CCTAAAC
1 CCTAAAC
173799786 CCTAAAC
1 CCTAAAC
173799793 CCTAAAC
1 CCTAAAC
173799800 CCTAAAC
1 CCTAAAC
173799807 CCTAAAC
1 CCTAAAC
173799814 CCTAAAC
1 CCTAAAC
173799821 CCTAAAC
1 CCTAAAC
173799828 CCTAAAC
1 CCTAAAC
173799835 CCTAAAC
1 CCTAAAC
173799842 CCTAAAC
1 CCTAAAC
173799849 CCTAAAC
1 CCTAAAC
173799856 CCTAAAC
1 CCTAAAC
173799863 CCTAAAC
1 CCTAAAC
173799870 CCTAAAC
1 CCTAAAC
173799877 CCTAAAC
1 CCTAAAC
173799884 CCTAAAC
1 CCTAAAC
173799891 CCTAAAC
1 CCTAAAC
173799898 CCTAAAC
1 CCTAAAC
173799905 CCTAAAC
1 CCTAAAC
173799912 CCTAAAC
1 CCTAAAC
173799919 CCTAAAC
1 CCTAAAC
173799926 CCTAAAC
1 CCTAAAC
173799933 CCTAAAC
1 CCTAAAC
173799940 CCTAAAC
1 CCTAAAC
173799947 CCTAAAC
1 CCTAAAC
173799954 CCTAAAC
1 CCTAAAC
173799961 CCTAAAC
1 CCTAAAC
173799968 CCTAAAC
1 CCTAAAC
173799975 CCTAAAC
1 CCTAAAC
173799982 CCTAAAC
1 CCTAAAC
173799989 CCTAAAC
1 CCTAAAC
173799996 CCTAAAC
1 CCTAAAC
173800003 CCTAAAC
1 CCTAAAC
173800010 CCTAAAC
1 CCTAAAC
173800017 CCTAAAC
1 CCTAAAC
173800024 CCTAAAC
1 CCTAAAC
173800031 CCTAAAC
1 CCTAAAC
173800038 CCTAAAC
1 CCTAAAC
173800045 CCTAAAC
1 CCTAAAC
173800052 CCTAAAC
1 CCTAAAC
173800059 CCTAAAC
1 CCTAAAC
173800066 CCTAAAC
1 CCTAAAC
173800073 CCTAAAC
1 CCTAAAC
173800080 CCTAAAC
1 CCTAAAC
173800087 CCTAAAC
1 CCTAAAC
173800094 CCTAAAC
1 CCTAAAC
173800101 CCTAAAC
1 CCTAAAC
173800108 CCTAAAC
1 CCTAAAC
173800115 CCTAAAC
1 CCTAAAC
173800122 CCTAAAC
1 CCTAAAC
173800129 CCTAAAC
1 CCTAAAC
173800136 CCTAAAC
1 CCTAAAC
173800143 CCTAAAC
1 CCTAAAC
173800150 CCTAAAC
1 CCTAAAC
173800157 CCTAAAC
1 CCTAAAC
173800164 CCTAAAC
1 CCTAAAC
173800171 CCTAAAC
1 CCTAAAC
173800178 CCTAAAC
1 CCTAAAC
173800185 CCTAAAC
1 CCTAAAC
173800192 CCTAAAC
1 CCTAAAC
173800199 CCTAAAC
1 CCTAAAC
173800206 CCTAAAC
1 CCTAAAC
173800213 CCTAAAC
1 CCTAAAC
173800220 CCTAAAC
1 CCTAAAC
173800227 CCTAAAC
1 CCTAAAC
173800234 CCTAAAC
1 CCTAAAC
173800241 CCTAAAC
1 CCTAAAC
173800248 CC-AAAC
1 CCTAAAC
173800254 CCTAAAC
1 CCTAAAC
173800261 CCTAAAC
1 CCTAAAC
173800268 CCTAAAC
1 CCTAAAC
173800275 CCTAAAC
1 CCTAAAC
173800282 CCTAAAC
1 CCTAAAC
173800289 CC-AAAC
1 CCTAAAC
173800295 CC-AAAC
1 CCTAAAC
173800301 CCTAAAC
1 CCTAAAC
173800308 CC-AAAC
1 CCTAAAC
173800314 CC-AAAC
1 CCTAAAC
173800320 CC--AAC
1 CCTAAAC
173800325 CC-AAAC
1 CCTAAAC
173800331 CCTAAAC
1 CCTAAAC
173800338 CCTAAAC
1 CCTAAAC
173800345 CCTAAAC
1 CCTAAAC
173800352 CC-AAAC
1 CCTAAAC
173800358 CCT-AAC
1 CCTAAAC
173800364 CC--AAC
1 CCTAAAC
173800369 CCTAAAC
1 CCTAAAC
173800376 CC-AAAC
1 CCTAAAC
173800382 CCTAAAC
1 CCTAAAC
173800389 CCTAAAC
1 CCTAAAC
173800396 CCTAAAC
1 CCTAAAC
173800403 CCTAAAC
1 CCTAAAC
173800410 CC-AAAC
1 CCTAAAC
173800416 CCTAAAC
1 CCTAAAC
173800423 CCTAAAC
1 CCTAAAC
173800430 CCTAAAC
1 CCTAAAC
173800437 CCTAAAC
1 CCTAAAC
173800444 CC-AAAC
1 CCTAAAC
173800450 CCTAAAC
1 CCTAAAC
173800457 CCTAAAC
1 CCTAAAC
173800464 CCTAAAC
1 CCTAAAC
173800471 CCTAAAC
1 CCTAAAC
173800478 CCTAAAC
1 CCTAAAC
173800485 CC-AAAC
1 CCTAAAC
173800491 CCTAAAC
1 CCTAAAC
173800498 CC-AAA-
1 CCTAAAC
173800503 CCTAAA-
1 CCTAAAC
173800509 CCTAAAC
1 CCTAAAC
173800516 CCTAAAC
1 CCTAAAC
173800523 CCTAAAC
1 CCTAAAC
173800530 CCTAAACC
1 CCTAAA-C
173800538 CCTAAAC
1 CCTAAAC
173800545 CCTAAAC
1 CCTAAAC
173800552 CCTAAAC
1 CCTAAAC
173800559 CCTAAAC
1 CCTAAAC
173800566 CCT-AAC
1 CCTAAAC
173800572 CCTAAAC
1 CCTAAAC
173800579 CCTAAAC
1 CCTAAAC
173800586 CCT-AAC
1 CCTAAAC
173800592 CCTAAAC
1 CCTAAAC
173800599 CCTAAAC
1 CCTAAAC
173800606 CCTAAAC
1 CCTAAAC
173800613 CCTAAAC
1 CCTAAAC
173800620 CCTAAAC
1 CCTAAAC
173800627 CC-AAAC
1 CCTAAAC
*
173800633 CAAC-CAAC
1 C--CTAAAC
*
173800641 CC-CAAC
1 CCTAAAC
173800647 CC-AAAC
1 CCTAAAC
173800653 CCTAAAC
1 CCTAAAC
173800660 CCTAAAC
1 CCTAAAC
173800667 CCTAAAC
1 CCTAAAC
173800674 CCTAAAC
1 CCTAAAC
173800681 CCTAAAC
1 CCTAAAC
173800688 CCTAAA-
1 CCTAAAC
173800694 CCT-AAC
1 CCTAAAC
173800700 CCTAAAC
1 CCTAAAC
*
173800707 CCTAAAA
1 CCTAAAC
173800714 CCTAAAC
1 CCTAAAC
173800721 CCTAAAC
1 CCTAAAC
173800728 CC
1 CC
173800730 AAAAATCGAA
Statistics
Matches: 12824, Mismatches: 5, Indels: 166
0.99 0.00 0.01
Matches are distributed among these distances:
4 2 0.00
5 41 0.00
6 337 0.03
7 12343 0.96
8 97 0.01
9 4 0.00
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.14
Consensus pattern (7 bp):
CCTAAAC
Found at i:173800774 original size:23 final size:23
Alignment explanation
Indices: 173800730--173800880 Score: 130
Period size: 22 Copynumber: 6.7 Consensus size: 23
173800720 CCCTAAACCC
* ** *
173800730 AAAAATCGAACCGATTTGCCCCAA
1 AAAAACCGAACCGGGTT-CCCCTA
173800754 AAAAACCGAACCGGGTTCCCC-A
1 AAAAACCGAACCGGGTTCCCCTA
**
173800776 AAAAACCGAACCGAATTCCCC-A
1 AAAAACCGAACCGGGTTCCCCTA
* * *
173800798 AAAAATCGAACCAGGG-TACCTTA
1 AAAAACCGAACC-GGGTTCCCCTA
* *
173800821 AAAAACCGAACCGGGGTCCCTTA
1 AAAAACCGAACCGGGTTCCCCTA
* * *
173800844 AAAAACCAAACCGGGGT-CCCTT
1 AAAAACCGAACCGGGTTCCCCTA
173800866 AAAAACCGAACCGGG
1 AAAAACCGAACCGGG
173800881 GTTAATAAAC
Statistics
Matches: 108, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
22 55 0.51
23 39 0.36
24 14 0.13
ACGTcount: A:0.40, C:0.30, G:0.17, T:0.12
Consensus pattern (23 bp):
AAAAACCGAACCGGGTTCCCCTA
Found at i:173800823 original size:22 final size:23
Alignment explanation
Indices: 173800797--173800882 Score: 129
Period size: 23 Copynumber: 3.8 Consensus size: 23
173800787 CGAATTCCCC
* * *
173800797 AAAAAATCGAACCAGGGTACCTT
1 AAAAAACCGAACCGGGGTCCCTT
173800820 AAAAAACCGAACCGGGGTCCCTT
1 AAAAAACCGAACCGGGGTCCCTT
*
173800843 AAAAAACCAAACCGGGGTCCCTT
1 AAAAAACCGAACCGGGGTCCCTT
173800866 -AAAAACCGAACCGGGGT
1 AAAAAACCGAACCGGGGT
173800883 TAATAAACCC
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
22 16 0.28
23 42 0.72
ACGTcount: A:0.40, C:0.27, G:0.21, T:0.13
Consensus pattern (23 bp):
AAAAAACCGAACCGGGGTCCCTT
Found at i:173800824 original size:45 final size:44
Alignment explanation
Indices: 173800730--173800878 Score: 138
Period size: 45 Copynumber: 3.3 Consensus size: 44
173800720 CCCTAAACCC
* * * **
173800730 AAAAATCGAACCGATTTGCCCCAAAAAAACCGAACCGGGTTCCCCA
1 AAAAACCGAACCGAATT-CCCC-AAAAAACCGAACCGGGTACCTTA
*
173800776 AAAAACCGAACCGAATTCCCCAAAAAATCGAACCAGGGTACCTTA
1 AAAAACCGAACCGAATTCCCCAAAAAACCGAACC-GGGTACCTTA
*** * * *
173800821 AAAAACCGAACCGGGGTCCCTTAAAAAACCAAACCGGGGTCCCTT-
1 AAAAACCGAACCGAATTCCC-CAAAAAACCGAACC-GGGTACCTTA
173800866 AAAAACCGAACCG
1 AAAAACCGAACCG
173800879 GGGTTAATAA
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
44 12 0.14
45 41 0.47
46 34 0.39
ACGTcount: A:0.41, C:0.31, G:0.16, T:0.12
Consensus pattern (44 bp):
AAAAACCGAACCGAATTCCCCAAAAAACCGAACCGGGTACCTTA
Found at i:173800879 original size:45 final size:44
Alignment explanation
Indices: 173800748--173800882 Score: 144
Period size: 45 Copynumber: 3.0 Consensus size: 44
173800738 AACCGATTTG
* ** ***
173800748 CCCCAAAAAAACCGAACCGGGTTCCCCAAAAAACCGAACCGAATT
1 CCCC-AAAAAACCGAACCGGGGTCCCTTAAAAACCGAACCGGGGT
* * *
173800793 CCCCAAAAAATCGAACCAGGGTACCTTAAAAAACCGAACCGGGGT
1 CCCCAAAAAACCGAACCGGGGTCCCTT-AAAAACCGAACCGGGGT
* *
173800838 CCCTTAAAAAACCAAACCGGGGTCCCTTAAAAACCGAACCGGGGT
1 CCC-CAAAAAACCGAACCGGGGTCCCTTAAAAACCGAACCGGGGT
173800883 TAATAAACCC
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
44 17 0.23
45 38 0.51
46 19 0.26
ACGTcount: A:0.39, C:0.32, G:0.18, T:0.11
Consensus pattern (44 bp):
CCCCAAAAAACCGAACCGGGGTCCCTTAAAAACCGAACCGGGGT
Found at i:173807188 original size:14 final size:14
Alignment explanation
Indices: 173807164--173807197 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
173807154 ATAATATTAT
173807164 TTGAGTGTGAATGTG
1 TTGA-TGTGAATGTG
173807179 TTGATGTGAATGTG
1 TTGATGTGAATGTG
173807193 TTGAT
1 TTGAT
173807198 TTGCTGAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.21, C:0.00, G:0.35, T:0.44
Consensus pattern (14 bp):
TTGATGTGAATGTG
Found at i:173809620 original size:14 final size:14
Alignment explanation
Indices: 173809601--173809629 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
173809591 TTATTTAGAT
173809601 AGAAAGAAAGAAAG
1 AGAAAGAAAGAAAG
173809615 AGAAAGAAAGAAAG
1 AGAAAGAAAGAAAG
173809629 A
1 A
173809630 AACTTGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (14 bp):
AGAAAGAAAGAAAG
Found at i:173819749 original size:31 final size:31
Alignment explanation
Indices: 173819711--173819773 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
173819701 AGTACGAGAA
173819711 GGGAGGAAGAGAGAATAATGAAAACAAAAAG
1 GGGAGGAAGAGAGAATAATGAAAACAAAAAG
173819742 GGGAGGAAGAGAGAATAATGAAAACAAAAAG
1 GGGAGGAAGAGAGAATAATGAAAACAAAAAG
173819773 G
1 G
173819774 AAATAAGGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.57, C:0.03, G:0.33, T:0.06
Consensus pattern (31 bp):
GGGAGGAAGAGAGAATAATGAAAACAAAAAG
Found at i:173826774 original size:21 final size:22
Alignment explanation
Indices: 173826735--173826775 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
173826725 ATCCATTCAT
*
173826735 CAATTTTATTAGGCATAACACA
1 CAATTTTATTAGCCATAACACA
173826757 CAATTTTATTA-CCATAACA
1 CAATTTTATTAGCCATAACA
173826776 AATTGTACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.41, C:0.20, G:0.05, T:0.34
Consensus pattern (22 bp):
CAATTTTATTAGCCATAACACA
Found at i:173826954 original size:21 final size:22
Alignment explanation
Indices: 173826915--173826955 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
173826905 ATCCATTCAT
*
173826915 CAATTTTATTAGGCATAACACA
1 CAATTTTATTAGCCATAACACA
173826937 CAATTTTATTA-CCATAACA
1 CAATTTTATTAGCCATAACA
173826956 AATTGTACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.41, C:0.20, G:0.05, T:0.34
Consensus pattern (22 bp):
CAATTTTATTAGCCATAACACA
Found at i:173827010 original size:180 final size:180
Alignment explanation
Indices: 173826702--173827064 Score: 717
Period size: 180 Copynumber: 2.0 Consensus size: 180
173826692 GGCAAAATAT
173826702 GGAGACAACATAATTGGAGGGATATCCATTCATCAATTTTATTAGGCATAACACACAATTTTATT
1 GGAGACAACATAATTGGAGGGATATCCATTCATCAATTTTATTAGGCATAACACACAATTTTATT
173826767 ACCATAACAAATTGTACAAAAGAAAAAAAATCAAAGTCATTCACCATTATAGAGCCCCAAACCCG
66 ACCATAACAAATTGTACAAAAGAAAAAAAATCAAAGTCATTCACCATTATAGAGCCCCAAACCCG
173826832 AGCCAGATTTCACTGTGTCGATGGGGTTGGAGGTTTCCATGTGGTAGTCA
131 AGCCAGATTTCACTGTGTCGATGGGGTTGGAGGTTTCCATGTGGTAGTCA
*
173826882 GGAGATAACATAATTGGAGGGATATCCATTCATCAATTTTATTAGGCATAACACACAATTTTATT
1 GGAGACAACATAATTGGAGGGATATCCATTCATCAATTTTATTAGGCATAACACACAATTTTATT
173826947 ACCATAACAAATTGTACAAAAGAAAAAAAATCAAAGTCATTCACCATTATAGAGCCCCAAACCCG
66 ACCATAACAAATTGTACAAAAGAAAAAAAATCAAAGTCATTCACCATTATAGAGCCCCAAACCCG
173827012 AGCCAGATTTCACTGTGTCGATGGGGTTGGAGGTTTCCATGTGGTAGTCA
131 AGCCAGATTTCACTGTGTCGATGGGGTTGGAGGTTTCCATGTGGTAGTCA
173827062 GGA
1 GGA
173827065 AAACCATCTA
Statistics
Matches: 182, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
180 182 1.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (180 bp):
GGAGACAACATAATTGGAGGGATATCCATTCATCAATTTTATTAGGCATAACACACAATTTTATT
ACCATAACAAATTGTACAAAAGAAAAAAAATCAAAGTCATTCACCATTATAGAGCCCCAAACCCG
AGCCAGATTTCACTGTGTCGATGGGGTTGGAGGTTTCCATGTGGTAGTCA
Found at i:173832562 original size:71 final size:71
Alignment explanation
Indices: 173832476--173832639 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
173832466 CGATTTGTCT
173832476 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
173832541 CTTTCA
66 CTTTCA
173832547 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
173832612 CTTTCA
66 CTTTCA
173832618 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
173832640 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:173832677 original size:71 final size:70
Alignment explanation
Indices: 173832476--173832673 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
173832466 CGATTTGTCT
* * * *
173832476 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
173832541 CTTTCA
65 CTTTCA
* * * *
173832547 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
173832612 CTTTCA
65 CTTTCA
* *
173832618 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
173832674 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:173840129 original size:71 final size:71
Alignment explanation
Indices: 173840043--173840206 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
173840033 CGATTTGTCT
173840043 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
173840108 CTTTCA
66 CTTTCA
173840114 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
173840179 CTTTCA
66 CTTTCA
173840185 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
173840207 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:173840244 original size:71 final size:70
Alignment explanation
Indices: 173840043--173840240 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
173840033 CGATTTGTCT
* * * *
173840043 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
173840108 CTTTCA
65 CTTTCA
* * * *
173840114 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
173840179 CTTTCA
65 CTTTCA
* *
173840185 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
173840241 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:173842111 original size:42 final size:42
Alignment explanation
Indices: 173842052--173842135 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
173842042 CAACACCCCA
173842052 AATTTGGCACAATCCACTAAGCATCAAACTCCCCTTTTTCCT
1 AATTTGGCACAATCCACTAAGCATCAAACTCCCCTTTTTCCT
173842094 AATTTGGCACAATCCACTAAGCATCAAACTCCCCTTTTTCCT
1 AATTTGGCACAATCCACTAAGCATCAAACTCCCCTTTTTCCT
173842136 CCCCTTATCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.29, C:0.33, G:0.07, T:0.31
Consensus pattern (42 bp):
AATTTGGCACAATCCACTAAGCATCAAACTCCCCTTTTTCCT
Found at i:173851651 original size:29 final size:30
Alignment explanation
Indices: 173851611--173851677 Score: 118
Period size: 29 Copynumber: 2.3 Consensus size: 30
173851601 TTATCGTGAT
*
173851611 AATAGTTAGTTTCAAGAATGATTCATTATA
1 AATATTTAGTTTCAAGAATGATTCATTATA
173851641 AAT-TTTAGTTTCAAGAATGATTCATTATA
1 AATATTTAGTTTCAAGAATGATTCATTATA
173851670 AATATTTA
1 AATATTTA
173851678 AAACCTGTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
29 28 0.80
30 7 0.20
ACGTcount: A:0.40, C:0.06, G:0.10, T:0.43
Consensus pattern (30 bp):
AATATTTAGTTTCAAGAATGATTCATTATA
Found at i:173853485 original size:6 final size:6
Alignment explanation
Indices: 173853474--173853575 Score: 86
Period size: 6 Copynumber: 16.8 Consensus size: 6
173853464 AACCAAAATG
* *
173853474 AGAATC AGAATC AAAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
173853522 AGTAA-C AGAATT AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
173853571 AGAAT
1 AGAAT
173853576 GTGAATGCAA
Statistics
Matches: 77, Mismatches: 10, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
5 6 0.08
6 64 0.83
7 5 0.06
8 2 0.03
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:173853488 original size:18 final size:18
Alignment explanation
Indices: 173853453--173853516 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
173853443 AAGAAATATT
** *
173853453 ATCAGAATTGGAACCAAA
1 ATCAGAATCAGAATCAAA
*
173853471 ATGAGAATCAGAATCAAA
1 ATCAGAATCAGAATCAAA
*
173853489 ATCAGTAA-CAGAATCAGA
1 ATCAG-AATCAGAATCAAA
173853507 ATCAGAATCA
1 ATCAGAATCA
173853517 ATATTAGTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
17 2 0.05
18 34 0.89
19 2 0.05
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.17
Consensus pattern (18 bp):
ATCAGAATCAGAATCAAA
Found at i:173853510 original size:30 final size:30
Alignment explanation
Indices: 173853474--173853575 Score: 150
Period size: 30 Copynumber: 3.4 Consensus size: 30
173853464 AACCAAAATG
*
173853474 AGAATCAGAATCAAAATCAGTAACAGAATC
1 AGAATCAGAATCAAAATTAGTAACAGAATC
* *
173853504 AGAATCAGAATCAATATTAGTAACAGAATT
1 AGAATCAGAATCAAAATTAGTAACAGAATC
* *
173853534 AGAATCAGAATCAGAATTACGTGACAGAATC
1 AGAATCAGAATCAAAATTA-GTAACAGAATC
173853565 AGAATCAGAAT
1 AGAATCAGAAT
173853576 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
30 44 0.69
31 20 0.31
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.21
Consensus pattern (30 bp):
AGAATCAGAATCAAAATTAGTAACAGAATC
Found at i:173853741 original size:27 final size:26
Alignment explanation
Indices: 173853693--173853779 Score: 111
Period size: 27 Copynumber: 3.3 Consensus size: 26
173853683 AGCATGGCTG
* * *
173853693 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
173853719 CCAGATACAAATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
173853746 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
173853773 CCAGAAC
1 CCAGAAC
173853780 GCTTCCTCCG
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 11 0.21
27 42 0.79
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:173854008 original size:27 final size:27
Alignment explanation
Indices: 173853978--173854173 Score: 212
Period size: 27 Copynumber: 7.3 Consensus size: 27
173853968 GGGGCAAATT
* * *
173853978 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
173854005 GGTAATTCTACCCTACAGGGGTGTTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
173854032 GGTATTTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
173854059 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
173854086 GGTAATTCAATCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
173854113 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
173854140 GGAAACTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
173854167 AGTAATT
1 GGTAATT
173854174 TCATAATCAA
Statistics
Matches: 137, Mismatches: 32, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 137 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:173854214 original size:27 final size:27
Alignment explanation
Indices: 173854178--173854712 Score: 571
Period size: 27 Copynumber: 19.8 Consensus size: 27
173854168 GTAATTTCAT
*
173854178 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
173854205 AATCGAGGGTAAAACGATAGTTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
173854232 AA-CTAAGGGT-AAACTAGTAATTCTGTA
1 AATC-GAGGGTAAAAC-GGTAATTCTGTA
* ** * **
173854259 AATCAAGGGTAAAATAGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
173854286 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
173854313 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
173854340 AATCAAGGGTAAAACAGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
173854367 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
173854394 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
173854421 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
173854448 AA-CTAAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
173854475 AATCGAGGGTAAAACGGTAATTCTTTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
173854502 AA-CTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
173854529 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
173854556 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
173854583 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
173854610 AATCGAAGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
173854637 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
173854664 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
173854691 AATCGAGGGTAAAACAGTAATT
1 AATCGAGGGTAAAACGGTAATT
173854713 GGTAAACTAA
Statistics
Matches: 435, Mismatches: 59, Indels: 28
0.83 0.11 0.05
Matches are distributed among these distances:
26 10 0.02
27 416 0.96
28 9 0.02
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:173854712 original size:81 final size:81
Alignment explanation
Indices: 173854178--173854705 Score: 663
Period size: 81 Copynumber: 6.5 Consensus size: 81
173854168 GTAATTTCAT
* * * * *
173854178 AATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAGTTTTGTAAACTAAGGGT-
1 AATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTA
173854242 AAACTAGTAATTCTGTA
66 AAAC-AGTAATTCTGTA
* * * *
173854259 AATCAAGGGTAAAATAGTAATTTTACAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTA
1 AATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTA
*
173854324 AACCAGTAATTCTGTA
66 AAACAGTAATTCTGTA
* * *
173854340 AATCAAGGGTAAAACAGTAATTTTACAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTA
1 AATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTA
*
173854405 AACCAGTAATTCTGTA
66 AAACAGTAATTCTGTA
* *
173854421 AATCAAGGGTAAAACAGTAATTCTGTAAA-CTAAGGGTAAAACGATAATTCTGTAAA-TCGAGGG
1 AATCAAGGGTAAAACAGTAATTCTATAAATC-GAGGGTAAAACGATAATTCTGTAAACT-GAGGG
* *
173854484 TAAAACGGTAATTCTTTA
64 TAAAACAGTAATTCTGTA
* *
173854502 AA-CTGAGGGTAAAAC-GATAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGG
1 AATC-AAGGGTAAAACAG-TAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGG
*
173854565 TAAAACGGTAATTCTGTA
64 TAAAACAGTAATTCTGTA
* * * * * * *
173854583 AATCGAGGGTAAAACGGTAATTTTACAAATCGAAGGTAAAACGGTAATTCTATAAA-TCGAGGGT
1 AATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACT-GAGGGT
* * **
173854647 AAAACGGTAATTTTAAA
65 AAAACAGTAATTCTGTA
*
173854664 AATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAC
1 AATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAC
173854706 AGTAATTGGT
Statistics
Matches: 404, Mismatches: 33, Indels: 20
0.88 0.07 0.04
Matches are distributed among these distances:
80 5 0.01
81 392 0.97
82 7 0.02
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.27
Consensus pattern (81 bp):
AATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTA
AAACAGTAATTCTGTA
Found at i:173856482 original size:40 final size:39
Alignment explanation
Indices: 173856437--173856644 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
173856427 CGGAATACAA
*
173856437 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
173856477 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
173856517 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
173856557 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
173856597 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
173856637 CCGGATAT
1 CCGGATAT
173856645 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:173856584 original size:80 final size:81
Alignment explanation
Indices: 173856437--173856642 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
173856427 CGGAATACAA
* * * *
173856437 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
173856501 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
173856517 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
173856580 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
173856597 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
173856643 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:173864594 original size:40 final size:40
Alignment explanation
Indices: 173864535--173864676 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
173864525 AAATTGAATG
* * *
173864535 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
173864575 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
173864615 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
173864655 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
173864677 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:173864677 original size:40 final size:39
Alignment explanation
Indices: 173864574--173864686 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 39
173864564 TGCTGGAAAT
* * **
173864574 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTCAC
*
173864614 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCAC
*
173864654 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGC
173864687 ACATGTTATA
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.05
40 60 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCAC
Found at i:173872662 original size:41 final size:40
Alignment explanation
Indices: 173872609--173872778 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
173872599 AGTCCGACTC
*
173872609 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
173872648 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
173872688 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
173872733 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
173872772 TTTAGAC
1 -TTAGAC
173872779 CCCGATTAGC
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 51 0.48
42 19 0.18
43 10 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:173880668 original size:41 final size:40
Alignment explanation
Indices: 173880615--173880784 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
173880605 AGTCCGACTC
*
173880615 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
173880654 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
173880694 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
173880739 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
173880778 TTTAGAC
1 -TTAGAC
173880785 CCCGATTAGC
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 51 0.48
42 19 0.18
43 10 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:173886239 original size:40 final size:39
Alignment explanation
Indices: 173886175--173886373 Score: 231
Period size: 39 Copynumber: 5.1 Consensus size: 39
173886165 GCTACTCGTT
* * * * * *
173886175 CAAACGCCTTCGGGACATAGCCCGGTTATGATAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
*
173886215 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
* *
173886255 C-AATCGCCTTCGGGCTTAGCCCGGATATCATAGCTTC-CA
1 CAAAT-GCCTTCGGGCTTAGCCCGGATATCACAAC-TCGCA
* *
173886294 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
* *
173886333 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
173886372 CA
1 CA
173886374 TTCATTCACA
Statistics
Matches: 141, Mismatches: 14, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 2 0.01
39 92 0.65
40 47 0.33
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
Found at i:173886336 original size:78 final size:79
Alignment explanation
Indices: 173886213--173886362 Score: 257
Period size: 78 Copynumber: 1.9 Consensus size: 79
173886203 TGATAACCCG
173886213 CACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATCGCCTTCGGGCTTAGCCCG
1 CACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATCGCCTTCGGGCTTAGCCCG
173886278 GATATCATAGCTTC
66 GATATCATAGCTTC
* * * *
173886292 CACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTGCCTTCGGGCTTAGCCCG
1 CACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATCGCCTTCGGGCTTAGCCCG
173886356 GATATCA
66 GATATCA
173886363 CAATTCGCAC
Statistics
Matches: 67, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
78 52 0.78
79 15 0.22
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (79 bp):
CACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATCGCCTTCGGGCTTAGCCCG
GATATCATAGCTTC
Found at i:173891593 original size:40 final size:40
Alignment explanation
Indices: 173891485--173891694 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
173891475 CGGGATTTAA
* * * * *
173891485 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
173891525 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
173891565 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
173891605 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
173891645 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
173891685 CCGGATATAT
1 CCGGATATAT
173891695 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:173899728 original size:40 final size:40
Alignment explanation
Indices: 173899620--173899829 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
173899610 CGGGATTTAA
* * * * *
173899620 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
173899660 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
173899700 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
173899740 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
173899780 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
173899820 CCGGATATAT
1 CCGGATATAT
173899830 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:173902928 original size:13 final size:13
Alignment explanation
Indices: 173902910--173902937 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
173902900 ACATATTATA
173902910 AATATTTTGTGTT
1 AATATTTTGTGTT
173902923 AATATTTTGTGTT
1 AATATTTTGTGTT
173902936 AA
1 AA
173902938 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:173904410 original size:40 final size:40
Alignment explanation
Indices: 173904362--173904607 Score: 415
Period size: 40 Copynumber: 6.2 Consensus size: 40
173904352 GGACTAAGAT
173904362 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
173904402 CCGAAGGCATTTGTGCTAGTTACTATAACCGGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAG-TC
173904442 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
173904482 CCAAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
173904522 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
173904562 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
173904601 CCGAAGG
1 CCGAAGG
173904608 TACTTGGGTT
Statistics
Matches: 195, Mismatches: 9, Indels: 5
0.93 0.04 0.02
Matches are distributed among these distances:
39 16 0.08
40 178 0.91
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:173911121 original size:13 final size:13
Alignment explanation
Indices: 173911103--173911130 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
173911093 ACATATTATA
173911103 AATATTTTGTGTT
1 AATATTTTGTGTT
173911116 AATATTTTGTGTT
1 AATATTTTGTGTT
173911129 AA
1 AA
173911131 AAATAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:173920393 original size:29 final size:29
Alignment explanation
Indices: 173920287--173920387 Score: 202
Period size: 29 Copynumber: 3.5 Consensus size: 29
173920277 TGACGAGATC
173920287 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
173920316 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
173920345 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
173920374 GGCACTAAGTGTGC
1 GGCACTAAGTGTGC
173920388 AAGCTGTGTG
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 72 1.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:173923641 original size:19 final size:19
Alignment explanation
Indices: 173923617--173923654 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
173923607 GTGAAAGGGA
173923617 ATGGTATCGATTAGTCCTT
1 ATGGTATCGATTAGTCCTT
*
173923636 ATGGTATTGATTAGTCCTT
1 ATGGTATCGATTAGTCCTT
173923655 CAGGATGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.21, C:0.13, G:0.21, T:0.45
Consensus pattern (19 bp):
ATGGTATCGATTAGTCCTT
Found at i:173923686 original size:37 final size:37
Alignment explanation
Indices: 173923636--173923707 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
173923626 ATTAGTCCTT
*
173923636 ATGGTATTGATTAGTCCTTCAGGATGATACCGTGGGA
1 ATGGTATCGATTAGTCCTTCAGGATGATACCGTGGGA
*
173923673 ATGGTATCGATTAGTCCTTCAGGATGATGCCGTGG
1 ATGGTATCGATTAGTCCTTCAGGATGATACCGTGG
173923708 CGACGGTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.15, G:0.31, T:0.32
Consensus pattern (37 bp):
ATGGTATCGATTAGTCCTTCAGGATGATACCGTGGGA
Found at i:173924377 original size:21 final size:21
Alignment explanation
Indices: 173924353--173924392 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
173924343 ACATTAATAA
173924353 GATTCAACCAGGGAAATTACG
1 GATTCAACCAGGGAAATTACG
* *
173924374 GATTCCATCAGGGAAATTA
1 GATTCAACCAGGGAAATTA
173924393 TAGATCCCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.23
Consensus pattern (21 bp):
GATTCAACCAGGGAAATTACG
Found at i:173924402 original size:21 final size:21
Alignment explanation
Indices: 173924361--173924402 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
173924351 AAGATTCAAC
* *
173924361 CAGGGAAATTACGGATTCCAT
1 CAGGGAAATTACAGATCCCAT
*
173924382 CAGGGAAATTATAGATCCCAT
1 CAGGGAAATTACAGATCCCAT
173924403 ACTAATTAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (21 bp):
CAGGGAAATTACAGATCCCAT
Found at i:173924514 original size:21 final size:21
Alignment explanation
Indices: 173924488--173924527 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
173924478 CTCAAGGCTA
*
173924488 ATTGATCAATAAATTCCACTG
1 ATTGATCAATAAAGTCCACTG
173924509 ATTGATCAATAAAGTCCAC
1 ATTGATCAATAAAGTCCAC
173924528 CAAAGAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (21 bp):
ATTGATCAATAAAGTCCACTG
Found at i:173929079 original size:29 final size:29
Alignment explanation
Indices: 173929045--173929119 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
173929035 TACTCGATTT
*
173929045 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
173929074 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
173929103 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
173929120 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:173929136 original size:29 final size:29
Alignment explanation
Indices: 173929103--173929176 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
173929093 CCTTCGAGCT
173929103 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
173929132 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
173929161 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
173929177 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:173937130 original size:29 final size:28
Alignment explanation
Indices: 173937060--173937134 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
173937050 ATACTCGATT
* *
173937060 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
173937088 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
173937117 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
173937135 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:173937151 original size:29 final size:29
Alignment explanation
Indices: 173937118--173937191 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
173937108 CCTTCGAGCT
173937118 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
173937147 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
173937176 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
173937192 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:173940042 original size:40 final size:41
Alignment explanation
Indices: 173939843--173940028 Score: 206
Period size: 40 Copynumber: 4.6 Consensus size: 41
173939833 TCGAATGATG
* *
173939843 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * * *
173939883 TCTGGACTAAGAT-CCGAAGGCATTCGTACGAGTTACTA-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
173939923 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
173939963 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
173940004 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
173940029 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 117 0.93
41 8 0.06
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:173943524 original size:40 final size:40
Alignment explanation
Indices: 173943428--173943606 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
173943418 CGAATGGTAT
* * * *
173943428 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
173943469 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
173943509 CCGGGTTAAGTCCCGAAGGCATTTGTGAGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
173943549 CCGGGCTAATTCCCGAAGGGAATTGTGCGAATTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
173943589 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
173943607 ACAATCGAGC
Statistics
Matches: 116, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 91 0.78
41 25 0.22
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:173943575 original size:80 final size:80
Alignment explanation
Indices: 173943428--173943606 Score: 236
Period size: 80 Copynumber: 2.2 Consensus size: 80
173943418 CGAATGGTAT
* *
173943428 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
*
173943493 GTGCGAGTTACCAAAA
65 GTGCGAATTACCAAAA
* * *
173943509 CCGGGTTAAGTCCCGAAGGCATTTGTG-AGAGTTACTAAATCCGGG-CTAATTCCCGAAGGGAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCA-AGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
173943572 TGTGCGAATTACTATAA
64 TGTGCGAATTACCAAAA
*
173943589 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
173943607 ACAATCGAGC
Statistics
Matches: 86, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
79 2 0.02
80 59 0.69
81 25 0.29
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTG
TGCGAATTACCAAAA
Found at i:173943631 original size:80 final size:80
Alignment explanation
Indices: 173943462--173943632 Score: 191
Period size: 80 Copynumber: 2.1 Consensus size: 80
173943452 GTGCTAAGTG
* * *
173943462 ACTAAATCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
* * * * *
173943527 GCATTTGTGAGAGTT
66 ACAATCGAGAGAGTC
* * * *
173943542 ACTAAATCCGGG-CTAATTCCCGAAGGGAATTGTGCGAATTACTATAACCGGGCTATGTCCCGAA
1 ACTAAATCCGGGTC-AATTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAA
*
173943606 GACAATCGAGCGAGTC
65 GACAATCGAGAGAGTC
* *
173943622 GCTATATCCGG
1 ACTAAATCCGG
173943633 TTAAATTTCG
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
79 1 0.01
80 74 0.99
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (80 bp):
ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
ACAATCGAGAGAGTC
Found at i:173951617 original size:39 final size:40
Alignment explanation
Indices: 173951449--173951627 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
173951439 TATTCGAATG
* *
173951449 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTA-AGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAA
* *
173951490 ATCCGGG-TCAA-TCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGATACTAA
* * *
173951529 AACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
* *
173951569 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGA-ATACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTA-A
*
173951609 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGCTAAGTCCCGAAG
173951628 ACAATCGAGC
Statistics
Matches: 120, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 33 0.28
40 78 0.65
41 9 0.08
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
Found at i:173951627 original size:79 final size:80
Alignment explanation
Indices: 173951451--173951627 Score: 234
Period size: 80 Copynumber: 2.2 Consensus size: 80
173951441 TTCGAATGAT
* *
173951451 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATCCCGAAGGCAATTG
*
173951516 TGCGAGTTACCAAAA
66 TGCGAGATACCAAAA
* * *
173951531 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AA-TCCCGAAGGCAAT
* *
173951594 TGTGCGA-ATACTATAA
64 TGTGCGAGATACCAAAA
*
173951610 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
173951628 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
78 1 0.01
79 39 0.46
80 45 0.53
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATCCCGAAGGCAATTG
TGCGAGATACCAAAA
Found at i:173951640 original size:79 final size:79
Alignment explanation
Indices: 173951485--173951641 Score: 192
Period size: 79 Copynumber: 2.0 Consensus size: 79
173951475 GTGCTAAGTG
* * * *
173951485 ACTAAATCCGGGTCAATCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGG
1 ACTAAATCCGGGTCAATCCCGAAGGCAATTGTGCGAGATACCAAAACCGGGCTAAGTCCCGAAGA
* * *
173951550 CATTTGTGCGAGTT
66 CAATCGAGCGAGTT
* * *
173951564 ACTAAATCCGGG-CTAATTCCCGAAGGCAATTGTGCGA-ATACTATAACCGGGCTATGTCCCGAA
1 ACTAAATCCGGGTC-AA-TCCCGAAGGCAATTGTGCGAGATACCAAAACCGGGCTAAGTCCCGAA
173951627 GACAATCGAGCGAGT
64 GACAATCGAGCGAGT
173951642 CGCTATATCC
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
78 1 0.02
79 46 0.70
80 19 0.29
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (79 bp):
ACTAAATCCGGGTCAATCCCGAAGGCAATTGTGCGAGATACCAAAACCGGGCTAAGTCCCGAAGA
CAATCGAGCGAGTT
Found at i:173954234 original size:40 final size:40
Alignment explanation
Indices: 173954179--173954394 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
173954169 TGGATGATAA
*
173954179 CCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTGACTAT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATAT
173954219 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
173954259 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
173954299 CCGGGCTAAGT-CCGAAGGCA-TTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
173954337 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
173954377 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
173954395 TACTTGGTTG
Statistics
Matches: 165, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
38 28 0.17
39 41 0.25
40 96 0.58
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:173954367 original size:78 final size:80
Alignment explanation
Indices: 173954179--173954394 Score: 325
Period size: 78 Copynumber: 2.7 Consensus size: 80
173954169 TGGATGATAA
*
173954179 CCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTGACTAT-TCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
173954243 GTGCGAGTTACTATAT
65 GTGCGAGTTACTATAT
173954259 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGT-CCGAAGGCA-TTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
173954322 TGCGAGTTACTATAT
66 TGCGAGTTACTATAT
* * * * *
173954337 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
173954395 TACTTGGTTG
Statistics
Matches: 127, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
77 8 0.06
78 61 0.48
79 17 0.13
80 41 0.32
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATAT
Found at i:173962373 original size:40 final size:40
Alignment explanation
Indices: 173962318--173962575 Score: 351
Period size: 40 Copynumber: 6.5 Consensus size: 40
173962308 TGGATGATAA
* * *
173962318 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
173962358 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
173962398 CCGGGCTAAGCCCCTAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
173962438 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
173962478 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
173962518 CCGGGATATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
173962558 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
173962576 TACTTGGCTT
Statistics
Matches: 197, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 16 0.08
40 181 0.92
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:173970644 original size:48 final size:48
Alignment explanation
Indices: 173970510--173970738 Score: 220
Period size: 48 Copynumber: 4.9 Consensus size: 48
173970500 GGGTTATCTA
* * * *
173970510 TGATCCCATGTAATACCATGTTTGGGACATGACTTTGGCATCGATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* ****
173970558 TAATTTTGTGTAAGACCATAG-CTGGG-C-T---ATTGGCATCGATATG
1 TGATCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGATATG
* * *
173970601 TGATCCCATTTAGGACCATGTCTGGGACATGGCATTGGCATCGACT-TA
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGA-TATG
* * * *
173970649 CGATCCCATGTAAGATCATGTCTGGGACATGGCATTGGTATCGATACG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* * *
173970697 TGATCCCATGTAAGACCATATCCGGGATATGGCATTGGCATC
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
173970739 CTACCATGTG
Statistics
Matches: 143, Mismatches: 29, Indels: 18
0.75 0.15 0.09
Matches are distributed among these distances:
42 1 0.01
43 31 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 2 0.01
48 104 0.73
49 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (48 bp):
TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
Found at i:173975758 original size:25 final size:25
Alignment explanation
Indices: 173975615--173975751 Score: 202
Period size: 25 Copynumber: 5.5 Consensus size: 25
173975605 TAAGCTTGTT
*
173975615 AATTTGTTCTTAATAATTCTGGTTA
1 AATTTGCTCTTAATAATTCTGGTTA
173975640 AATTTGCTCTTAATAATTCTGGTTA
1 AATTTGCTCTTAATAATTCTGGTTA
* *
173975665 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATAATTCTGGTTA
* *
173975690 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATAATTCTGGTTA
* *
173975715 AATTTGCTCTTAATATTTCTAGTTA
1 AATTTGCTCTTAATAATTCTGGTTA
*
173975740 AATTTGCCCTTA
1 AATTTGCTCTTA
173975752 CTATTTCGGA
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 104 1.00
ACGTcount: A:0.28, C:0.12, G:0.11, T:0.49
Consensus pattern (25 bp):
AATTTGCTCTTAATAATTCTGGTTA
Found at i:173976631 original size:45 final size:45
Alignment explanation
Indices: 173976567--173976786 Score: 304
Period size: 45 Copynumber: 5.0 Consensus size: 45
173976557 TATCGTACAG
* *
173976567 TACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
173976612 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGGGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
173976657 TACTATTCGGGCCTTTGAGCCTAGCAAGCTATAATGCTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
173976702 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATACCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
173976747 TGA-TA-TCGGG-CTTCGAGCCTAGTAGGCGA-AATGCCGGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
173976787 ATGAATTCGG
Statistics
Matches: 160, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
42 10 0.06
43 17 0.11
44 5 0.03
45 127 0.79
46 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:173980374 original size:46 final size:46
Alignment explanation
Indices: 173980321--173980492 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
173980311 AACCCGCCCC
* *
173980321 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
* * *
173980367 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATCCA
* * * *
173980415 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
*
173980460 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
173980493 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 2 0.02
46 59 0.57
47 28 0.27
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
Found at i:173980431 original size:93 final size:93
Alignment explanation
Indices: 173980326--173980496 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
173980316 GCCCCTAAGT
* * * *
173980326 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
173980391 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
173980419 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
173980484 CGAGTTCGGATGC
66 CGAGTTCGGATGC
173980497 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:173980953 original size:30 final size:30
Alignment explanation
Indices: 173980919--173980978 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
173980909 ATTTAATACG
173980919 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
173980949 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
173980979 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:173982600 original size:5 final size:5
Alignment explanation
Indices: 173982581--173982622 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
173982571 TAATGTTAGT
* *
173982581 AAAAG AAGA- AAAAG AAAAG AAAAG AAAAAA AAAAG AAAAG AA
1 AAAAG AAAAG AAAAG AAAAG AAAAG -AAAAG AAAAG AAAAG AA
173982623 TGCTCATCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
4 3 0.10
5 24 0.77
6 4 0.13
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:173982602 original size:11 final size:11
Alignment explanation
Indices: 173982586--173982622 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
173982576 TTAGTAAAAG
173982586 AAGAAAAAGAA
1 AAGAAAAAGAA
173982597 AAG-AAAAGAA
1 AAGAAAAAGAA
*
173982607 AAAAAAAAGAA
1 AAGAAAAAGAA
173982618 AAGAA
1 AAGAA
173982623 TGCTCATCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAGAAAAAGAA
Found at i:173982607 original size:16 final size:16
Alignment explanation
Indices: 173982586--173982622 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
173982576 TTAGTAAAAG
*
173982586 AAGAAAAAGAAAAGAA
1 AAGAAAAAAAAAAGAA
173982602 AAGAAAAAAAAAAGAA
1 AAGAAAAAAAAAAGAA
173982618 AAGAA
1 AAGAA
173982623 TGCTCATCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
AAGAAAAAAAAAAGAA
Found at i:173983930 original size:29 final size:29
Alignment explanation
Indices: 173983897--173984115 Score: 339
Period size: 29 Copynumber: 7.6 Consensus size: 29
173983887 GTGACGAGAT
*
173983897 TGGCACTAAGTGTGCGTGCTGGAAATAAA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
173983926 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
173983955 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
**
173983984 TGGCACTAAGTGTGCAAGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
173984013 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
173984042 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
173984071 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
173984100 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
173984116 AGTTCGGAGG
Statistics
Matches: 174, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 174 1.00
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:173984042 original size:87 final size:87
Alignment explanation
Indices: 173983896--173984115 Score: 377
Period size: 87 Copynumber: 2.5 Consensus size: 87
173983886 GGTGACGAGA
** *
173983896 TTGGCACTAAGTGTGCGTGCTGGAAATAAATGGCACTAAGTGTGCGTGCTGGAAATATATGGCAC
1 TTGGCACTAAGTGTGCAAGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCAC
173983961 TAAGTGTGCGTGCTGGAAATAT
66 TAAGTGTGCGTGCTGGAAATAT
173983983 TTGGCACTAAGTGTGCAAGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCAC
1 TTGGCACTAAGTGTGCAAGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCAC
173984048 TAAGTGTGCGTGCTGGAAATAT
66 TAAGTGTGCGTGCTGGAAATAT
* * **
173984070 TTGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTGGGTGTGCG
1 TTGGCACTAAGTGTGCAAGCTGGAAATATATGGCACTAAGTGTGCG
173984116 AGTTCGGAGG
Statistics
Matches: 126, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 126 1.00
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (87 bp):
TTGGCACTAAGTGTGCAAGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCAC
TAAGTGTGCGTGCTGGAAATAT
Found at i:173984162 original size:87 final size:87
Alignment explanation
Indices: 173983897--173984172 Score: 297
Period size: 87 Copynumber: 3.2 Consensus size: 87
173983887 GTGACGAGAT
** * * *
173983897 TGGCACTAAGTGTGCGTGCTGGAAATAA-ATGGCACTAAGTGTGCGTGCTGGAAATATATGGCAC
1 TGGCACTAAGTGTGCAAGCTGGAAA-AATACGGCACTAAGTGTGCGAGCTGGAAAGATATGGCAC
* **
173983961 TAAGTGTGCGTGCTGGAAATATT
65 TAAGTGTGCGAGCTGGAAATACG
* * * *
173983984 TGGCACTAAGTGTGCAAGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTAAGTGTGCGAGCTGGAAAGATATGGCACT
* **
173984049 AAGTGTGCGTGCTGGAAATATT
66 AAGTGTGCGAGCTGGAAATACG
** * * *
173984071 TGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTGGGTGTGCGAGTTCGG-AGGGTATGGCAC
1 TGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTAAGTGTGCGAGCT-GGAAAGATATGGCAC
** *
173984135 TGTGTGTGCGAGCT-TAAATTACG
65 TAAGTGTGCGAGCTGGAAA-TACG
173984158 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
173984173 GAAATTGAGT
Statistics
Matches: 168, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
86 4 0.02
87 162 0.96
88 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTAAGTGTGCGAGCTGGAAAGATATGGCACT
AAGTGTGCGAGCTGGAAATACG
Found at i:173992064 original size:29 final size:29
Alignment explanation
Indices: 173992031--173992162 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
173992021 GTGACGAGAT
173992031 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
173992060 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
173992089 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
173992118 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
173992147 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
173992163 AGTTCGGAGG
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:174001265 original size:30 final size:30
Alignment explanation
Indices: 174001231--174001331 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
174001221 GAAAAGATTG
* * *
174001231 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
174001261 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
174001289 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
174001318 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
174001332 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:174001343 original size:29 final size:28
Alignment explanation
Indices: 174001260--174001335 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
174001250 AAAATTGTAC
* *
174001260 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
174001288 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
174001317 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
174001336 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:174008601 original size:20 final size:20
Alignment explanation
Indices: 174008576--174008627 Score: 86
Period size: 20 Copynumber: 2.5 Consensus size: 20
174008566 TTAAGGTAGA
174008576 ATCAAGAAGAACTCATAAAC
1 ATCAAGAAGAACTCATAAAC
*
174008596 ATCAAGAAGAACTCATGAAC
1 ATCAAGAAGAACTCATAAAC
174008616 ATCAAGATAGAA
1 ATCAAGA-AGAA
174008628 GCAAACTACC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 26 0.87
21 4 0.13
ACGTcount: A:0.54, C:0.17, G:0.13, T:0.15
Consensus pattern (20 bp):
ATCAAGAAGAACTCATAAAC
Found at i:174008866 original size:26 final size:26
Alignment explanation
Indices: 174008833--174008937 Score: 192
Period size: 26 Copynumber: 4.0 Consensus size: 26
174008823 AATTCCCATT
174008833 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
*
174008859 ATGGAACATTTACCTAACCCATTATT
1 ATGGAACATTTACCTAACCCATTATC
*
174008885 ATGAAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
174008911 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
174008937 A
1 A
174008938 ATTTGTATCA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.26, G:0.07, T:0.31
Consensus pattern (26 bp):
ATGGAACATTTACCTAACCCATTATC
Found at i:174011495 original size:25 final size:25
Alignment explanation
Indices: 174011435--174011495 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
174011425 TCATATCTCG
*
174011435 TGTGAGTAATTACATTCACAGCTCA
1 TGTGAGTAATTACATTCACAACTCA
* *
174011460 TGTAAGCAATTACATTCACAACTCA
1 TGTGAGTAATTACATTCACAACTCA
174011485 TGTGAGTAATT
1 TGTGAGTAATT
174011496 TAAATCTCGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (25 bp):
TGTGAGTAATTACATTCACAACTCA
Found at i:174013448 original size:28 final size:28
Alignment explanation
Indices: 174013407--174013464 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
174013397 ATTACCGGAG
174013407 TTACCAATTGATTTATTAGATATTTTAT
1 TTACCAATTGATTTATTAGATATTTTAT
*
174013435 TTACCAATTTATTTATTAGATATTTTAT
1 TTACCAATTGATTTATTAGATATTTTAT
174013463 TT
1 TT
174013465 CATCTAACAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.57
Consensus pattern (28 bp):
TTACCAATTGATTTATTAGATATTTTAT
Found at i:174013461 original size:16 final size:16
Alignment explanation
Indices: 174013417--174013464 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
174013407 TTACCAATTG
174013417 ATTTATTAGATATTTT
1 ATTTATTAGATATTTT
**
174013433 ATTTA--CCA-A-TTT
1 ATTTATTAGATATTTT
174013445 ATTTATTAGATATTTT
1 ATTTATTAGATATTTT
174013461 ATTT
1 ATTT
174013465 CATCTAACAT
Statistics
Matches: 24, Mismatches: 4, Indels: 8
0.67 0.11 0.22
Matches are distributed among these distances:
12 8 0.33
13 1 0.04
14 2 0.08
15 1 0.04
16 12 0.50
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.60
Consensus pattern (16 bp):
ATTTATTAGATATTTT
Found at i:174021435 original size:24 final size:24
Alignment explanation
Indices: 174021408--174021566 Score: 264
Period size: 24 Copynumber: 6.6 Consensus size: 24
174021398 CTTATTATGT
* * *
174021408 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
174021432 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
174021456 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
174021480 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
174021504 TCGCACACATAGTGCCATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
174021528 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
174021552 TCGCACACATAGTGC
1 TCGCACACATAGTGC
174021567 ATTTGAGATA
Statistics
Matches: 129, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 129 1.00
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:174021442 original size:48 final size:47
Alignment explanation
Indices: 174021386--174021566 Score: 245
Period size: 48 Copynumber: 3.8 Consensus size: 47
174021376 ACCGAATGTG
* ** * *
174021386 GCACACATAGTGCTTATTATGTTCGCACACATAGAGCTATAGCAAATC
1 GCACACATAGTGCTTAGTA-AATCGCACACATAGTGCCATAGCAAATC
*
174021434 GCACACATAGTGCTATAGTAAATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATCGCACACATAGTGCCATAGCAAATC
*
174021482 GCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGCAAATC
1 GCACACATAGTG-CTTAGTAAATCGCACACATAGTGCCATAGCAAATC
* *
174021530 GCACACATAGTGCCATAGTGAATCGCACACATAGTGC
1 GCACACATAGTG-CTTAGTAAATCGCACACATAGTGC
174021567 ATTTGAGATA
Statistics
Matches: 122, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
48 117 0.96
49 5 0.04
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (47 bp):
GCACACATAGTGCTTAGTAAATCGCACACATAGTGCCATAGCAAATC
Found at i:174029288 original size:24 final size:24
Alignment explanation
Indices: 174029261--174029419 Score: 273
Period size: 24 Copynumber: 6.6 Consensus size: 24
174029251 CTTATTATGT
* * *
174029261 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
174029285 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
174029309 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
174029333 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
174029357 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
174029381 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
174029405 TCGCACACATAGTGC
1 TCGCACACATAGTGC
174029420 ATTTGAGATA
Statistics
Matches: 131, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 131 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:174029295 original size:48 final size:47
Alignment explanation
Indices: 174029239--174029419 Score: 245
Period size: 48 Copynumber: 3.8 Consensus size: 47
174029229 ACCGAATGTG
* ** * * *
174029239 GCACACATAGTGCTTATTATGTTCGCACACATAGAGCTATAGCAAATC
1 GCACACATAGTGCTTAGTA-AATCGCACACATAGTGCCATAGTAAATC
174029287 GCACACATAGTGCTATAGTAAATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATCGCACACATAGTGCCATAGTAAATC
*
174029335 GCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATCGCACACATAGTGCCATAGTAAATC
* *
174029383 GCACACATAGTGCCATAGTGAATCGCACACATAGTGC
1 GCACACATAGTG-CTTAGTAAATCGCACACATAGTGC
174029420 ATTTGAGATA
Statistics
Matches: 123, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
48 118 0.96
49 5 0.04
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (47 bp):
GCACACATAGTGCTTAGTAAATCGCACACATAGTGCCATAGTAAATC
Found at i:174037479 original size:40 final size:40
Alignment explanation
Indices: 174037434--174037599 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
174037424 CGGAATACAA
174037434 CGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGCC
1 CGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGCC
* ** *
174037474 CGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 CGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGCC
* * *
174037514 CGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAACC
1 CGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGCC
*** ** * *
174037554 CGGATATAATTTC-AGCATAAATGTCTTCGGGACTTAGCC
1 CGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGCC
174037593 CGGATAT
1 CGGATAT
174037600 CATTCAATTG
Statistics
Matches: 104, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 29 0.28
40 75 0.72
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGCC
Found at i:174045333 original size:40 final size:40
Alignment explanation
Indices: 174045289--174045439 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
174045279 ATAACCACGT
174045289 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
* *
174045329 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTC
* * **
174045369 GCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATTTC-C
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
** * *
174045408 AGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 -GCACGAATGCCTTCGGGTCTTAGCCCGGATA
174045440 TCATTCAATT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 84 0.91
41 3 0.03
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
Found at i:174047200 original size:40 final size:40
Alignment explanation
Indices: 174047144--174047228 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
174047134 GGACGTCACA
* *
174047144 ATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGC
1 ATTTGTGCGAGCTACTATAA-CCGGGCTAAGTCCCGAAGGC
* *
174047184 ATTTGTGCGAGCTACTATAACCGGGCTATGTCCCGAAGGT
1 ATTTGTGCGAGCTACTATAACCGGGCTAAGTCCCGAAGGC
174047224 ATTTG
1 ATTTG
174047229 AACGAGTAGC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 38 0.95
41 2 0.05
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
ATTTGTGCGAGCTACTATAACCGGGCTAAGTCCCGAAGGC
Found at i:174047242 original size:40 final size:40
Alignment explanation
Indices: 174047151--174047247 Score: 99
Period size: 40 Copynumber: 2.4 Consensus size: 40
174047141 ACAATTTGTG
* * **
174047151 CGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTTGTG
1 CGAGCTACTATAA-CCGGGCTAAGTCCCGAAGGCATTTGAA
* *
174047191 CGAGCTACTATAACCGGGCTATGTCCCGAAGGTATTTGAA
1 CGAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAA
*
174047231 CGAG-TAGCTATATCCGG
1 CGAGCTA-CTATAACCGG
174047248 TTAAACTCCG
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
39 2 0.04
40 44 0.92
41 2 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CGAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAA
Found at i:174048894 original size:27 final size:26
Alignment explanation
Indices: 174048864--174048922 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
174048854 TGTGGGGTAG
*
174048864 AATTACTAAAATACTCTTGGTTTACAA
1 AATTACT-AAATACCCTTGGTTTACAA
* *
174048891 AATTACTGAATGCCCTTGGTTTACAA
1 AATTACTAAATACCCTTGGTTTACAA
174048917 AATTAC
1 AATTAC
174048923 CGAATGCCCC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 22 0.76
27 7 0.24
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.36
Consensus pattern (26 bp):
AATTACTAAATACCCTTGGTTTACAA
Found at i:174048911 original size:26 final size:26
Alignment explanation
Indices: 174048879--174048931 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
174048869 CTAAAATACT
*
174048879 CTTGGTTTACAAAATTACTGAATGCC
1 CTTGGTTTACAAAATTACCGAATGCC
174048905 CTTGGTTTACAAAATTACCGAATGCC
1 CTTGGTTTACAAAATTACCGAATGCC
174048931 C
1 C
174048932 CTTATTTGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (26 bp):
CTTGGTTTACAAAATTACCGAATGCC
Found at i:174049025 original size:27 final size:27
Alignment explanation
Indices: 174048995--174049173 Score: 182
Period size: 27 Copynumber: 6.7 Consensus size: 27
174048985 CCTGATTTGG
* * * * *
174048995 AAAATGATCGAAATATCATCGACTTGT
1 AAAATTATCGAAATACCCTCAACCTGT
* * *
174049022 AAAATTACCAAAATACCCTCGACCTGT
1 AAAATTATCGAAATACCCTCAACCTGT
*
174049049 AAAATTACCGAAATACCCTCAACCTGT
1 AAAATTATCGAAATACCCTCAACCTGT
*
174049076 AAAATTATCGAAATACCCTCAACTTGT
1 AAAATTATCGAAATACCCTCAACCTGT
* * *
174049103 AAAATTATTGAAATACCCTCAACTTAT
1 AAAATTATCGAAATACCCTCAACCTGT
* **
174049130 AAAATT-TCAGAAATACCATCAATTTGT
1 AAAATTATC-GAAATACCCTCAACCTGT
*
174049157 -AAATTATAGAAATACCC
1 AAAATTATCGAAATACCC
174049174 CTAATTTGAA
Statistics
Matches: 132, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
26 14 0.11
27 118 0.89
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (27 bp):
AAAATTATCGAAATACCCTCAACCTGT
Found at i:174049053 original size:54 final size:54
Alignment explanation
Indices: 174048995--174049201 Score: 195
Period size: 54 Copynumber: 3.9 Consensus size: 54
174048985 CCTGATTTGG
* * * * *
174048995 AAAATGATCGAAATATCATCGACTTGTAAAATTACCAAAATACCCTCGACCTGT
1 AAAATTATCGAAATACCCTCAACTTGTAAAATTACCAAAATACCCTCAACCTGT
* * * * *
174049049 AAAATTACCGAAATACCCTCAACCTGTAAAATTATCGAAATACCCTCAACTTGT
1 AAAATTATCGAAATACCCTCAACTTGTAAAATTACCAAAATACCCTCAACCTGT
* * * * **
174049103 AAAATTATTGAAATACCCTCAACTTATAAAATT-TCAGAAATACCATCAATTTGT
1 AAAATTATCGAAATACCCTCAACTTGTAAAATTACCA-AAATACCCTCAACCTGT
* * * *
174049157 -AAATTATAGAAATACCC-CTAATTTGAAAAATTACTAAAATACCCT
1 AAAATTATCGAAATACCCTC-AACTTGTAAAATTACCAAAATACCCT
174049202 TGATTTGGAA
Statistics
Matches: 126, Mismatches: 24, Indels: 7
0.80 0.15 0.04
Matches are distributed among these distances:
52 1 0.01
53 36 0.29
54 89 0.71
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (54 bp):
AAAATTATCGAAATACCCTCAACTTGTAAAATTACCAAAATACCCTCAACCTGT
Found at i:174049080 original size:81 final size:81
Alignment explanation
Indices: 174048995--174049201 Score: 202
Period size: 81 Copynumber: 2.6 Consensus size: 81
174048985 CCTGATTTGG
* * * * *
174048995 AAAATGATCGAAATATCATCGACTTGTAAAATTACCAAAATACCCTCGACCTGTAAAATTACCGA
1 AAAATGATCGAAATACCATCAACTTGTAAAATTACCAAAATACCCTCAACCTATAAAATTACAGA
*
174049060 AATACCCTCAACCTGT
66 AATACCATCAACCTGT
* * *** * *
174049076 AAAATTATCGAAATACCCTCAACTTGTAAAATTATTGAAATACCCTCAACTTATAAAATTTCAGA
1 AAAATGATCGAAATACCATCAACTTGTAAAATTACCAAAATACCCTCAACCTATAAAATTACAGA
**
174049141 AATACCATCAATTTGT
66 AATACCATCAACCTGT
* * * * * *
174049157 -AAATTATAGAAATACC-CCTAATTTGAAAAATTACTAAAATACCCT
1 AAAATGATCGAAATACCATC-AACTTGTAAAATTACCAAAATACCCT
174049202 TGATTTGGAA
Statistics
Matches: 104, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
79 1 0.01
80 37 0.36
81 66 0.63
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (81 bp):
AAAATGATCGAAATACCATCAACTTGTAAAATTACCAAAATACCCTCAACCTATAAAATTACAGA
AATACCATCAACCTGT
Found at i:174049196 original size:27 final size:27
Alignment explanation
Indices: 174049049--174049311 Score: 187
Period size: 27 Copynumber: 9.7 Consensus size: 27
174049039 CTCGACCTGT
* * ** *
174049049 AAAATTACCGAAATACCCTCAACCTGT
1 AAAATTACAGAAATACCCTTAATTTGA
* * *
174049076 AAAATTATC-GAAATACCCTCAACTTGT
1 AAAATTA-CAGAAATACCCTTAATTTGA
** * *
174049103 AAAATTATTGAAATACCCTCAACTT-A
1 AAAATTACAGAAATACCCTTAATTTGA
* * *
174049129 TAAAATTTCAGAAATACCATCAATTTG-
1 -AAAATTACAGAAATACCCTTAATTTGA
* * *
174049156 TAAATTATAGAAATACCCCTAATTTGA
1 AAAATTACAGAAATACCCTTAATTTGA
* *
174049183 AAAATTACTA-AAATACCCTTGATTTGG
1 AAAATTAC-AGAAATACCCTTAATTTGA
*
174049210 AAAATTACAGAAATACCCCTAATTT-A
1 AAAATTACAGAAATACCCTTAATTTGA
* *
174049236 CAAAATTACAGAAATACCCTTGACTTTCA
1 -AAAATTACAGAAATACCCTT-AATTTGA
* ** *
174049265 AAAATTACAGAAATACCATTGGTTTGC
1 AAAATTACAGAAATACCCTTAATTTGA
174049292 AAAATTACTA-AAATACCCTT
1 AAAATTAC-AGAAATACCCTT
174049312 GGTTTATAGA
Statistics
Matches: 195, Mismatches: 30, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
26 21 0.11
27 147 0.75
28 26 0.13
29 1 0.01
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.30
Consensus pattern (27 bp):
AAAATTACAGAAATACCCTTAATTTGA
Found at i:174049295 original size:55 final size:54
Alignment explanation
Indices: 174049157--174049312 Score: 197
Period size: 55 Copynumber: 2.9 Consensus size: 54
174049147 ATCAATTTGT
* * * **
174049157 AAATTATAGAAATACCCCTAATTTGAAAAATTACTAAAATACCCTTGATTTGGA
1 AAATTACAGAAATACCACTAATTTGCAAAATTACTAAAATACCCTTGATTTCAA
* *
174049211 AAATTACAGAAATACCCCTAATTTACAAAATTAC-AGAAATACCCTTGACTTTCAA
1 AAATTACAGAAATACCACTAATTTGCAAAATTACTA-AAATACCCTTGA-TTTCAA
* **
174049266 AAATTACAGAAATACCATTGGTTTGCAAAATTACTAAAATACCCTTG
1 AAATTACAGAAATACCACTAATTTGCAAAATTACTAAAATACCCTTG
174049313 GTTTATAGAT
Statistics
Matches: 89, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 43 0.48
55 44 0.49
56 1 0.01
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.29
Consensus pattern (54 bp):
AAATTACAGAAATACCACTAATTTGCAAAATTACTAAAATACCCTTGATTTCAA
Found at i:174049316 original size:27 final size:27
Alignment explanation
Indices: 174048864--174049312 Score: 177
Period size: 27 Copynumber: 16.7 Consensus size: 27
174048854 TGTGGGGTAG
* * *
174048864 AATTACTA-AAATACTCTTGGTTTACAA
1 AATTAC-AGAAATACCCTTGATTTGCAA
* * * *
174048891 AATTACTG-AATGCCCTTGGTTTACAA
1 AATTACAGAAATACCCTTGATTTGCAA
* * **
174048917 AATTACCG-AATGCCCCTT-ATTTGGGA
1 AATTACAGAAAT-ACCCTTGATTTGCAA
*
174048943 AATTACCA-AAATACCCTCT-ATTTGTAA
1 AATTA-CAGAAATACCCT-TGATTTGCAA
* * * * *
174048970 AACTATAGATATACCCCTGATTTGGAA
1 AATTACAGAAATACCCTTGATTTGCAA
* * * * * *
174048997 AATGATC-GAAATATCATCGACTTGTAA
1 AATTA-CAGAAATACCCTTGATTTGCAA
* ** *
174049024 AATTACCA-AAATACCCTCGACCTGTAA
1 AATTA-CAGAAATACCCTTGATTTGCAA
* ** ** *
174049051 AATTACCGAAATACCCTCAACCTGTAA
1 AATTACAGAAATACCCTTGATTTGCAA
** * *
174049078 AATTATC-GAAATACCCTCAACTTGTAA
1 AATTA-CAGAAATACCCTTGATTTGCAA
** ** * **
174049105 AATTATTGAAATACCCTCAACTTATAA
1 AATTACAGAAATACCCTTGATTTGCAA
* * ** *
174049132 AATTTCAGAAATACCATCAATTTG-TA
1 AATTACAGAAATACCCTTGATTTGCAA
* * * *
174049158 AATTATAGAAATACCCCTAATTTGAAA
1 AATTACAGAAATACCCTTGATTTGCAA
*
174049185 AATTACTA-AAATACCCTTGATTTGGAA
1 AATTAC-AGAAATACCCTTGATTTGCAA
* * *
174049212 AATTACAGAAATACCCCTAATTTACAA
1 AATTACAGAAATACCCTTGATTTGCAA
174049239 AATTACAGAAATACCCTTGACTTT-CAAA
1 AATTACAGAAATACCCTTGA-TTTGC-AA
* *
174049267 AATTACAGAAATACCATTGGTTTGCAA
1 AATTACAGAAATACCCTTGATTTGCAA
174049294 AATTACTA-AAATACCCTTG
1 AATTAC-AGAAATACCCTTG
174049313 GTTTATAGAT
Statistics
Matches: 339, Mismatches: 64, Indels: 38
0.77 0.15 0.09
Matches are distributed among these distances:
26 63 0.19
27 249 0.73
28 27 0.08
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACAGAAATACCCTTGATTTGCAA
Found at i:174049622 original size:41 final size:41
Alignment explanation
Indices: 174049577--174049698 Score: 181
Period size: 41 Copynumber: 3.0 Consensus size: 41
174049567 GAAGGAAGAA
*
174049577 ATTGAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* * *
174049618 ATTGAGGATCGCATGGTTGCTTAACGATCGTGGATCCACTG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* * *
174049659 ATTAACGATCGTATGGTTGCTTGACGACCGTGGATCCACC
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACC
174049699 AGTGGCCTTT
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:174051545 original size:30 final size:30
Alignment explanation
Indices: 174051509--174051667 Score: 213
Period size: 28 Copynumber: 5.5 Consensus size: 30
174051499 GACAAGATTG
* * * * *
174051509 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
174051539 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
174051567 GCACTAAGTGTGCGAGCTGAAAA-TATAT-
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
174051595 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
174051625 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
174051654 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
174051668 GATTCACTAT
Statistics
Matches: 118, Mismatches: 5, Indels: 13
0.87 0.04 0.10
Matches are distributed among these distances:
27 2 0.02
28 45 0.38
29 30 0.25
30 39 0.33
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:174051621 original size:58 final size:57
Alignment explanation
Indices: 174051509--174051667 Score: 214
Period size: 58 Copynumber: 2.8 Consensus size: 57
174051499 GACAAGATTG
* * * * * *
174051509 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATATA
174051567 GCACTAAGTGTGCGAGCTGAAAATATAT-GCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATATA
174051625 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
174051668 GATTCACTAT
Statistics
Matches: 91, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
55 2 0.02
56 16 0.18
57 3 0.03
58 56 0.62
59 14 0.15
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATATA
Found at i:174059419 original size:30 final size:30
Alignment explanation
Indices: 174059383--174059483 Score: 127
Period size: 28 Copynumber: 3.5 Consensus size: 30
174059373 GACAAGATTG
* * *
174059383 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
*
174059413 GCACTAAGTGTGCGAGTTT--GATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
174059441 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
174059470 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
174059484 GATTCACTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 23 0.37
29 20 0.32
30 19 0.31
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:174059477 original size:29 final size:29
Alignment explanation
Indices: 174059383--174059483 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
174059373 GACAAGATTG
* * * *
174059383 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTGAAAA-TATATA
*
174059413 GCACTAAGTGTGCGAGTTTG--ATTATATA
1 GCACTAAGTGTGCGAG-TTGAAAATATATA
*
174059441 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTTGAAAATATATA
174059470 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
174059484 GATTCACTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 20 0.33
29 22 0.36
30 15 0.25
31 2 0.03
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTGAAAATATATA
Found at i:174067292 original size:30 final size:30
Alignment explanation
Indices: 174067256--174067354 Score: 132
Period size: 28 Copynumber: 3.4 Consensus size: 30
174067246 GACAAGATTG
* *
174067256 GCACTAAGTGTGCGGGTTTAAAATTATACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
*
174067286 GCACTAAGTGTGCGAGTTT--GATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
174067314 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
174067343 GCACTAAGTGTG
1 GCACTAAGTGTG
174067355 GGGATTCACT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
28 24 0.39
29 18 0.30
30 19 0.31
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:174075164 original size:30 final size:30
Alignment explanation
Indices: 174075128--174075287 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
174075118 GACAAGATTG
* * * * *
174075128 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
174075158 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
174075186 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
174075215 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
174075245 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
174075274 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
174075288 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 49 0.41
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:174075255 original size:59 final size:57
Alignment explanation
Indices: 174075128--174075287 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
174075118 GACAAGATTG
* * * * * *
174075128 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATATA
174075186 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATATA
174075245 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
174075288 GATTCACTAT
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 51 0.55
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATATA
Found at i:174080421 original size:39 final size:39
Alignment explanation
Indices: 174080321--174080431 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 39
174080311 TCGAATGATG
* *
174080321 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTGACCAAA
* **
174080361 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTGACCAAA
*
174080401 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAG
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAG
174080432 CTATTATAAC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
39 20 0.32
40 34 0.55
41 8 0.13
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:174080445 original size:39 final size:39
Alignment explanation
Indices: 174080321--174080471 Score: 128
Period size: 40 Copynumber: 3.8 Consensus size: 39
174080311 TCGAATGATG
* *
174080321 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGCT-ACCAAA
* * *
174080361 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGCTACCAAA
* **
174080401 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGCTATTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGCTACCA-AA
* * *
174080441 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAG
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAG
174080472 TCGCTATATC
Statistics
Matches: 92, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
39 31 0.34
40 52 0.57
41 9 0.10
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGCTACCAAA
Found at i:174088393 original size:40 final size:39
Alignment explanation
Indices: 174088310--174088421 Score: 127
Period size: 40 Copynumber: 2.8 Consensus size: 39
174088300 TCGAATGATG
* *
174088310 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTGACCAAA
* **
174088350 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTGACCAAA
*
174088390 TCCGGGTTAAGTCCTGAAGGCATTTGTGCGAG
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGCGAG
174088422 CTATTATAAC
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
39 3 0.05
40 51 0.82
41 8 0.13
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:174088435 original size:40 final size:39
Alignment explanation
Indices: 174088310--174088461 Score: 121
Period size: 40 Copynumber: 3.8 Consensus size: 39
174088300 TCGAATGATG
* *
174088310 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGCT-ACCAAA
* * *
174088350 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGCTACCAAA
* **
174088390 TCCGGGTTAAGTCCTGAAGGCATTTGTGCGAGCTATTATAA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGCGAGCTACCA-AA
* * *
174088431 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAG
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAG
174088462 TCGCTATATC
Statistics
Matches: 92, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
39 3 0.03
40 76 0.83
41 13 0.14
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGCTACCAAA
Found at i:174093423 original size:29 final size:29
Alignment explanation
Indices: 174093388--174093524 Score: 127
Period size: 29 Copynumber: 4.7 Consensus size: 29
174093378 CTACTCGATT
* *
174093388 TCGCACACTTAGTGCCACGTAATTT-AAGC
1 TCGCACACTTAGTGCCA-ATAATTTCCAGC
** **
174093417 TCGCACACAGAGTGCCATATTTTTTTCCAGC
1 TCGCACACTTAGTGCCA-A-TAATTTCCAGC
*
174093448 TTGCACACTTAGTGCCAA-ATATTTCCAGC
1 TCGCACACTTAGTGCCAATA-ATTTCCAGC
*
174093477 ACGCACACTTAGTGCC-ATATATTTCCAGC
1 TCGCACACTTAGTGCCAATA-ATTTCCAGC
*
174093506 ACGCACACTTAGTGCCAAT
1 TCGCACACTTAGTGCCAAT
174093525 CTCGACACCA
Statistics
Matches: 89, Mismatches: 14, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
28 1 0.01
29 64 0.72
30 7 0.08
31 17 0.19
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
TCGCACACTTAGTGCCAATAATTTCCAGC
Found at i:174093463 original size:60 final size:58
Alignment explanation
Indices: 174093389--174093523 Score: 155
Period size: 60 Copynumber: 2.3 Consensus size: 58
174093379 TACTCGATTT
** * * *
174093389 CGCACACTTAGTGCCACGTAATTT-AAGCTCGCACACAGAGTGCCATATTTTTTTCCAGCT
1 CGCACACTTAGTGCCAAAT-ATTTCAAGCACGCACACAGAGTGCCATA--TATTTCCAGCA
* * **
174093449 TGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCAAATATTTCAAGCACGCACACAGAGTGCCATATATTTCCAGCA
174093507 CGCACACTTAGTGCCAA
1 CGCACACTTAGTGCCAA
174093524 TCTCGACACC
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
58 25 0.39
59 4 0.06
60 35 0.55
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (58 bp):
CGCACACTTAGTGCCAAATATTTCAAGCACGCACACAGAGTGCCATATATTTCCAGCA
Found at i:174101485 original size:29 final size:29
Alignment explanation
Indices: 174101450--174101586 Score: 127
Period size: 29 Copynumber: 4.7 Consensus size: 29
174101440 CTACTCGATT
* *
174101450 TCGCACACTTAGTGCCACGTAATTT-AAGC
1 TCGCACACTTAGTGCCA-ATAATTTCCAGC
** **
174101479 TCGCACACACAGTGCCATATTTTTTTCCAGC
1 TCGCACACTTAGTGCCA-A-TAATTTCCAGC
*
174101510 TTGCACACTTAGTGCCAA-ATATTTCCAGC
1 TCGCACACTTAGTGCCAATA-ATTTCCAGC
*
174101539 ACGCACACTTAGTGCC-ATATATTTCCAGC
1 TCGCACACTTAGTGCCAATA-ATTTCCAGC
*
174101568 ACGCACACTTAGTGCCAAT
1 TCGCACACTTAGTGCCAAT
174101587 CTCGACACCA
Statistics
Matches: 89, Mismatches: 14, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
28 1 0.01
29 64 0.72
30 7 0.08
31 17 0.19
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (29 bp):
TCGCACACTTAGTGCCAATAATTTCCAGC
Done.