Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 562 of 770
Found at i:175209331 original size:41 final size:43
Alignment explanation
Indices: 175209266--175209346 Score: 148
Period size: 41 Copynumber: 1.9 Consensus size: 43
175209256 AAATACCCCT
175209266 AGTTTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTATAC
1 AGTTTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTATAC
175209309 AGTTTGT-AAATTA-CAAAATACCCTAGTTTGTAAAATTA
1 AGTTTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTA
175209347 CCAAAATACC
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
41 25 0.66
42 6 0.16
43 7 0.18
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.36
Consensus pattern (43 bp):
AGTTTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTATAC
Found at i:175209366 original size:27 final size:26
Alignment explanation
Indices: 175209311--175209384 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 26
175209301 AATTATACAG
*
175209311 TTTGTAAATTA-CAAAATA-CCCTAG
1 TTTGTAAATTACCAAAATACCCCTAA
175209335 TTTGTAAAATTACCAAAATACCCCTAA
1 TTTGT-AAATTACCAAAATACCCCTAA
**
175209362 TTTGTGAAATTACTGAAATACCC
1 TTTGT-AAATTACCAAAATACCC
175209385 TCGACCTGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
24 5 0.12
25 6 0.14
26 7 0.16
27 25 0.58
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (26 bp):
TTTGTAAATTACCAAAATACCCCTAA
Found at i:175209398 original size:27 final size:27
Alignment explanation
Indices: 175209368--175209442 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
175209358 CTAATTTGTG
175209368 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
175209395 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
*
175209422 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
175209443 TTTATAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.27
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:175209488 original size:27 final size:27
Alignment explanation
Indices: 175209434--175209673 Score: 331
Period size: 27 Copynumber: 8.9 Consensus size: 27
175209424 ATTACCAAAG
* *
175209434 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
175209461 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
175209488 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
175209515 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
175209542 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
175209569 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
175209596 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
175209623 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
175209650 TACCCTCGATTTACAAAATTACCG
1 TACCCTCGATTTACAGAATTACCG
175209674 AAATACCCTC
Statistics
Matches: 194, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
26 1 0.01
27 192 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:175209492 original size:81 final size:81
Alignment explanation
Indices: 175209407--175209700 Score: 301
Period size: 81 Copynumber: 3.6 Consensus size: 81
175209397 ATTATTGAAA
*
175209407 TACCCTCGACTTGTA-A-AATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTACCCTCGA
1 TACCCTCGA-TT-TACAGAATTACCAAATTACCCTCGATTTATAGAATTACCATTTTACCCTCGA
*
175209470 TTTATAGAATTACCGTTT
64 TTTACAGAATTACCGTTT
* * *** * * * *
175209488 TACCC-CTAATTTACATAATTACCGTTTTACCC-CTGATTTACATAATTATCGTTTTACCCTCGA
1 TACCCTC-GATTTACAGAATTACCAAATTACCCTC-GATTTATAGAATTACCATTTTACCCTCGA
*
175209551 CTTACAGAATTACCGTTT
64 TTTACAGAATTACCGTTT
*** ** *
175209569 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATT
1 TACCCTCGATTTACAGAATTACCAAATTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
*
175209634 TACAGAATTACTGTTT
66 TACAGAATTACCGTTT
* * * *
175209650 TACCCTCGATTTACAAAATTACCGAAA-TACCCTCAATTTGTAAAATTACCA
1 TACCCTCGATTTACAGAATTACC-AAATTACCCTCGATTTATAGAATTACCA
175209701 AAATACCCCT
Statistics
Matches: 177, Mismatches: 29, Indels: 14
0.80 0.13 0.06
Matches are distributed among these distances:
79 2 0.01
80 5 0.03
81 168 0.95
82 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.37
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCAAATTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
TACAGAATTACCGTTT
Found at i:175209680 original size:27 final size:27
Alignment explanation
Indices: 175209407--175209736 Score: 182
Period size: 27 Copynumber: 12.2 Consensus size: 27
175209397 ATTATTGAAA
* ** * *
175209407 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTACAAAATTACCGAAT
* * *
175209434 TACCCTCGATTTATAGAATTACC-ATTT
1 TACCCTCGATTTACAAAATTACCGA-AT
* * **
175209461 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGAAT
* * **
175209488 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAAAATTACCGAAT
* * **
175209515 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAAAATTACCGAAT
* * **
175209542 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGAAT
* **
175209569 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGAAT
* * * **
175209596 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGAAT
* * * **
175209623 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGAAT
*
175209650 TACCCTCGATTTACAAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACCGAAT
* ** * *
175209677 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCGAAT
* * *
175209704 TACCC-CTGATTTACAAAGTTACAGAAA
1 TACCCTC-GATTTACAAAATTACCGAAT
175209731 TACCCT
1 TACCCT
175209737 TGACTTTTTA
Statistics
Matches: 262, Mismatches: 35, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
26 3 0.01
27 258 0.98
28 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGAAT
Found at i:175209697 original size:54 final size:54
Alignment explanation
Indices: 175209407--175209699 Score: 250
Period size: 54 Copynumber: 5.4 Consensus size: 54
175209397 ATTATTGAAA
* * **** * *
175209407 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACC-ATTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAAAATTACCGA-TT
* * * *
175209461 TACCCTCGATTTATAGAATTACCGTTTTACCC-CTAATTTACATAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTC-GATTTACAAAATTACCGATT
* * * * * *
175209515 TACCC-CTGATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTT
1 TACCCTC-GATTTATAAAATTACCGTTTTACCCTCGATTTACAAAATTACCGATT
* * * * * *
175209569 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAAAATTACCGATT
* * * * **
175209623 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGAAA
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAAAATTACCGATT
* *
175209677 TACCCTCAATTTGTAAAATTACC
1 TACCCTCGATTTATAAAATTACC
175209700 AAAATACCCC
Statistics
Matches: 198, Mismatches: 36, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
53 2 0.01
54 194 0.98
55 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAAAATTACCGATT
Found at i:175209790 original size:27 final size:26
Alignment explanation
Indices: 175209743--175209798 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
175209733 CCCTTGACTT
*
175209743 TTTAAAAATTATAGAAGTACCATTGG
1 TTTAAAAATTATAGAAATACCATTGG
*
175209769 TTTACAAAATTACT-GAAATACCTTTGG
1 TTTA-AAAATTA-TAGAAATACCATTGG
175209796 TTT
1 TTT
175209799 GTTGATTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (26 bp):
TTTAAAAATTATAGAAATACCATTGG
Found at i:175209916 original size:27 final size:27
Alignment explanation
Indices: 175209852--175209916 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
175209842 ACCCCTAAAA
*
175209852 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
175209879 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
175209906 GGTAAAATGAC
1 GGTAAAATGAC
175209917 GAATATGCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:175211103 original size:25 final size:25
Alignment explanation
Indices: 175211074--175211121 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
175211064 TTATAATATG
* * *
175211074 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
175211099 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
175211122 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:175211190 original size:20 final size:20
Alignment explanation
Indices: 175211165--175211223 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
175211155 TAAATATGGT
175211165 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
175211185 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
175211205 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
175211224 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:175211301 original size:24 final size:24
Alignment explanation
Indices: 175211274--175211440 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
175211264 GAGGAAGTGA
175211274 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
175211298 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
175211322 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
175211346 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
175211369 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
175211393 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
175211417 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
175211441 ATGATAAAGC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 101 0.75
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:175211391 original size:71 final size:71
Alignment explanation
Indices: 175211274--175211441 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
175211264 GAGGAAGTGA
175211274 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
175211339 AGTTATC
65 AGTTATC
** *
175211346 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
175211411 GTTATT
66 GTTATC
*
175211417 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
175211442 TGATAAAGCA
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 54 0.61
72 35 0.39
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:175211709 original size:30 final size:31
Alignment explanation
Indices: 175211632--175211725 Score: 154
Period size: 31 Copynumber: 3.1 Consensus size: 31
175211622 CGTTTACAGT
* *
175211632 AAAGGCTTCGGCCTAGTAATATGAAATCTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
175211663 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
175211694 AAAGGCTTC-GCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
175211724 AA
1 AA
175211726 TATGAAAAGG
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
30 22 0.37
31 38 0.63
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:175213761 original size:26 final size:26
Alignment explanation
Indices: 175213732--175213782 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
175213722 AAATTAATGC
175213732 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
175213758 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
175213783 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:175215881 original size:26 final size:26
Alignment explanation
Indices: 175215852--175215902 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
175215842 AAATTAATGC
175215852 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
175215878 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
175215903 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:175218000 original size:26 final size:26
Alignment explanation
Indices: 175217971--175218021 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
175217961 AAATTAATGC
175217971 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
175217997 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
175218022 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:175219876 original size:14 final size:15
Alignment explanation
Indices: 175219855--175219891 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
175219845 GTGTACTATA
175219855 TCCCATATTGCTTTT
1 TCCCATATTGCTTTT
*
175219870 T-CCATA-TGTTTTT
1 TCCCATATTGCTTTT
175219883 TCCCATATT
1 TCCCATATT
175219892 ACCTTCTAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
13 7 0.37
14 10 0.53
15 2 0.11
ACGTcount: A:0.16, C:0.24, G:0.05, T:0.54
Consensus pattern (15 bp):
TCCCATATTGCTTTT
Found at i:175220117 original size:26 final size:26
Alignment explanation
Indices: 175220088--175220138 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
175220078 AAATTAATGC
175220088 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
175220114 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
175220139 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:175222235 original size:26 final size:26
Alignment explanation
Indices: 175222206--175222256 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
175222196 AAATTAATGC
175222206 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
175222232 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
175222257 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:175224354 original size:26 final size:26
Alignment explanation
Indices: 175224325--175224375 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
175224315 AAATTAATGC
175224325 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
175224351 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
175224376 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:175228504 original size:26 final size:26
Alignment explanation
Indices: 175228475--175228525 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
175228465 AAATTAATGC
175228475 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
175228501 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
175228526 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:175230621 original size:26 final size:26
Alignment explanation
Indices: 175230592--175230642 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
175230582 AAATTAATGC
175230592 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
175230618 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
175230643 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:175234391 original size:40 final size:40
Alignment explanation
Indices: 175234346--175234512 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
175234336 CGGAATATAA
175234346 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
175234386 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
175234426 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
175234466 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
175234505 CCGGATAT
1 CCGGATAT
175234513 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:175234496 original size:80 final size:79
Alignment explanation
Indices: 175234362--175234512 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
175234352 ATAATCACGT
*
175234362 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
175234427 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
175234442 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
175234505 CCGGATAT
64 CCGGATAT
175234513 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:175242390 original size:40 final size:40
Alignment explanation
Indices: 175242345--175242511 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
175242335 CGGAATATAA
175242345 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
175242385 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
175242425 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
175242465 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
175242504 CCGGATAT
1 CCGGATAT
175242512 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:175242495 original size:80 final size:79
Alignment explanation
Indices: 175242345--175242511 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
175242335 CGGAATATAA
* *
175242345 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
175242410 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
175242425 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
175242487 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
175242504 CCGGATAT
1 CCGGATAT
175242512 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:175243360 original size:17 final size:19
Alignment explanation
Indices: 175243337--175243382 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
175243327 AAGAAGCATG
175243337 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
175243355 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
175243373 AATCATGCTC
1 AATCATGCTC
175243383 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:175246998 original size:63 final size:63
Alignment explanation
Indices: 175246918--175247100 Score: 183
Period size: 63 Copynumber: 2.8 Consensus size: 63
175246908 AGACATTATG
* *
175246918 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTGACAAGAGAGCTACGAGATAA
** * * *
175246981 ATGTAGCTAGGTCGCATGCATGGCT-CTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATGT-GACAAGAGAGCTACGAGA
175247045 TAA
61 TAA
* * * *
175247048 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGTGTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTG-ACAAGAGAGC
175247101 CGAACTCTAT
Statistics
Matches: 97, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 41 0.42
64 3 0.03
65 4 0.04
66 26 0.27
67 22 0.23
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTGACAAGAGAGCTACGAGATAA
Found at i:175248956 original size:40 final size:40
Alignment explanation
Indices: 175248866--175249084 Score: 336
Period size: 39 Copynumber: 5.5 Consensus size: 40
175248856 TATTCGGATG
*
175248866 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
175248905 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
*
175248945 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
** *
175248985 ATATCCGGGCTAAGTCCCGAAGGCATTCAT-CTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
* * *
175249024 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
*
175249064 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
175249085 ATACTTGGGT
Statistics
Matches: 166, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 83 0.50
40 83 0.50
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
Found at i:175249019 original size:79 final size:80
Alignment explanation
Indices: 175248866--175249084 Score: 338
Period size: 79 Copynumber: 2.8 Consensus size: 80
175248856 TATTCGGATG
175248866 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
** *
175248930 TTTGTGCTAGTTACT
66 TTCATGCTAGTGACT
*
175248945 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
175249010 TTCAT-CTAGTGACT
66 TTCATGCTAGTGACT
* * *
175249024 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
175249085 ATACTTGGGT
Statistics
Matches: 131, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
78 14 0.11
79 84 0.64
80 33 0.25
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTCATGCTAGTGACT
Found at i:175257011 original size:40 final size:40
Alignment explanation
Indices: 175256957--175257219 Score: 332
Period size: 40 Copynumber: 6.5 Consensus size: 40
175256947 TATTCGGATG
175256957 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
175256996 ATATCCGGGCTAAGTCCCGAAGGTATTTCTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
175257036 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
175257079 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
**** * *
175257119 ATATCCGGGCTAAGTCCCGAAGGCATTCACACTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
175257159 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
175257199 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
175257220 ATACTTGGGT
Statistics
Matches: 194, Mismatches: 26, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 19 0.10
40 138 0.71
41 1 0.01
43 36 0.19
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:175257182 original size:123 final size:119
Alignment explanation
Indices: 175256961--175257219 Score: 369
Period size: 123 Copynumber: 2.1 Consensus size: 119
175256951 CGGATGATAT
* *
175256961 CCGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGTATTTCT
1 CCGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTCT
* * * *
175257026 GCAAGTTACTATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATAC
66 ACAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGC--G-AGTTGCTATAC
*
175257083 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA-TTC
1 CC-GGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTC
*
175257147 -ACACTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
65 TACA--AGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
*
175257203 CCGGCTAAATCCCGAAG
1 CCGGCTAAGTCCCGAAG
175257220 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 9, Indels: 9
0.87 0.06 0.06
Matches are distributed among these distances:
119 14 0.11
120 12 0.10
121 3 0.02
122 5 0.04
123 91 0.73
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (119 bp):
CCGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTCT
ACAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
Found at i:175265776 original size:20 final size:20
Alignment explanation
Indices: 175265751--175265790 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
175265741 CCAGTTGAAA
175265751 CGTAAACTACATTTCTACCC
1 CGTAAACTACATTTCTACCC
175265771 CGTAAACTACATTTCTACCC
1 CGTAAACTACATTTCTACCC
175265791 ATCCCTAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.35, G:0.05, T:0.30
Consensus pattern (20 bp):
CGTAAACTACATTTCTACCC
Found at i:175269894 original size:46 final size:45
Alignment explanation
Indices: 175269794--175269928 Score: 125
Period size: 46 Copynumber: 2.9 Consensus size: 45
175269784 GGGATATTTG
175269794 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAA
1 GGCATCCGAACTCGTTGAGTTGAGTC-GAGTTCA--TATGGATGCAAA
* *
175269842 TG--TCCGAACTCGTTGAGTTGAGTCGAGTTCA-A-GAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCGAGTTCATATG-GATGCAA--A
* *
175269886 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGAT
1 GGCATCCGAACTCGTTGAGTTGAGT-CGAGTTCA--TATGGAT
175269929 ACGAGAGCTC
Statistics
Matches: 72, Mismatches: 5, Indels: 18
0.76 0.05 0.19
Matches are distributed among these distances:
41 1 0.01
42 7 0.10
44 2 0.03
45 7 0.10
46 41 0.57
47 8 0.11
48 1 0.01
50 4 0.06
51 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (45 bp):
GGCATCCGAACTCGTTGAGTTGAGTCGAGTTCATATGGATGCAAA
Found at i:175269915 original size:20 final size:20
Alignment explanation
Indices: 175269890--175269955 Score: 57
Period size: 20 Copynumber: 3.3 Consensus size: 20
175269880 TAACTAGGCA
175269890 TCCGAGCTCATTGAGTTGAG
1 TCCGAGCTCATTGAGTTGAG
* *
175269910 TCCGAGTTCACTT-A-TGGA-
1 TCCGAGCTCA-TTGAGTTGAG
*
175269928 TACGAGAGCTCATTGAGTTGAG
1 T-C-CGAGCTCATTGAGTTGAG
175269950 TCCGAG
1 TCCGAG
175269956 TTCGCTTATG
Statistics
Matches: 34, Mismatches: 6, Indels: 12
0.65 0.12 0.23
Matches are distributed among these distances:
18 1 0.03
19 6 0.18
20 20 0.59
21 6 0.18
22 1 0.03
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (20 bp):
TCCGAGCTCATTGAGTTGAG
Found at i:175280189 original size:40 final size:40
Alignment explanation
Indices: 175280081--175280290 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
175280071 CGGGATTTAA
* * * * *
175280081 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
175280121 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
175280161 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
175280201 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
175280241 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
175280281 CCGGATATAT
1 CCGGATATAT
175280291 TTCAATGTTC
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:175284318 original size:46 final size:46
Alignment explanation
Indices: 175284265--175284440 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
175284255 ATATTTGGCA
175284265 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
175284311 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
175284358 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
175284404 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
175284441 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:175284420 original size:93 final size:93
Alignment explanation
Indices: 175284261--175284432 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
175284251 TGGGATATTT
* *
175284261 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
175284326 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
175284354 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
175284419 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
175284433 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:175287304 original size:15 final size:15
Alignment explanation
Indices: 175287276--175287348 Score: 85
Period size: 15 Copynumber: 4.9 Consensus size: 15
175287266 GTATCTTGGG
* *
175287276 TTTCTTTGTCCTGGA
1 TTTCTTTATTCTGGA
*
175287291 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
175287306 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
175287321 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
175287336 TTTCTTTATTCTG
1 TTTCTTTATTCTG
175287349 TTTTCTTGTT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
14 2 0.04
15 44 0.92
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.15, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:175287336 original size:30 final size:30
Alignment explanation
Indices: 175287267--175287348 Score: 94
Period size: 30 Copynumber: 2.7 Consensus size: 30
175287257 CATAGTATCG
* * * *
175287267 TATCTTGGGTTTCTTTGTCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
* *
175287297 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
175287327 TATCTTGGATTTCTTTATTCTG
1 TATCTTGGATTTCTTTATTCTG
175287349 TTTTCTTGTT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
29 1 0.02
30 42 0.95
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.17, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:175288700 original size:140 final size:140
Alignment explanation
Indices: 175288448--175288715 Score: 536
Period size: 140 Copynumber: 1.9 Consensus size: 140
175288438 GGGGGGAGAG
175288448 TTGTAATATCCTGATTTTGGGCCTAGTCGGAATAGTGGTTTCGTGACCACAAAATCCGAGATAGA
1 TTGTAATATCCTGATTTTGGGCCTAGTCGGAATAGTGGTTTCGTGACCACAAAATCCGAGATAGA
175288513 AATAATTATTTTATGATTATTTTAAGGTCTATGATATGATTGCATGATTGTGTGAAAATTTCGAA
66 AATAATTATTTTATGATTATTTTAAGGTCTATGATATGATTGCATGATTGTGTGAAAATTTCGAA
175288578 TCCTGTCGAC
131 TCCTGTCGAC
175288588 TTGTAATATCCTGATTTTGGGCCTAGTCGGAATAGTGGTTTCGTGACCACAAAATCCGAGATAGA
1 TTGTAATATCCTGATTTTGGGCCTAGTCGGAATAGTGGTTTCGTGACCACAAAATCCGAGATAGA
175288653 AATAATTATTTTATGATTATTTTAAGGTCTATGATATGATTGCATGATTGTGTGAAAATTTCG
66 AATAATTATTTTATGATTATTTTAAGGTCTATGATATGATTGCATGATTGTGTGAAAATTTCG
175288716 TGAAGAAATT
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
140 128 1.00
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (140 bp):
TTGTAATATCCTGATTTTGGGCCTAGTCGGAATAGTGGTTTCGTGACCACAAAATCCGAGATAGA
AATAATTATTTTATGATTATTTTAAGGTCTATGATATGATTGCATGATTGTGTGAAAATTTCGAA
TCCTGTCGAC
Found at i:175289932 original size:46 final size:46
Alignment explanation
Indices: 175289879--175290054 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
175289869 ATATTTGGCA
175289879 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
175289925 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
175289972 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
175290018 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
175290055 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:175290034 original size:93 final size:93
Alignment explanation
Indices: 175289875--175290046 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
175289865 TGGGATATTT
* *
175289875 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
175289940 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
175289968 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
175290033 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
175290047 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:175293281 original size:39 final size:39
Alignment explanation
Indices: 175293200--175293362 Score: 236
Period size: 39 Copynumber: 4.2 Consensus size: 39
175293190 TATGGTAACC
** *
175293200 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
175293240 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
175293279 CGCACAATTGCCTTCGGGCTTAGCCTGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
175293318 AGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
175293357 CGCACA
1 CGCACA
175293363 TTCATTCACA
Statistics
Matches: 111, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 95 0.86
40 16 0.14
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:175297623 original size:40 final size:40
Alignment explanation
Indices: 175297549--175297759 Score: 257
Period size: 40 Copynumber: 5.3 Consensus size: 40
175297539 TCTTCAGAAT
** * *
175297549 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * * *
175297587 TTAGCCCGGATATGGTCACTAGTATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
175297627 TTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
175297667 TTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * *
175297707 TTAGCCCGGATATAGTCACTAGCATAAAAGCCCTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
175297747 TTAGCCCGGATAT
1 TTAGCCCGGATAT
175297760 CATTCGAATA
Statistics
Matches: 147, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
38 4 0.03
39 15 0.10
40 127 0.86
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:175304858 original size:40 final size:40
Alignment explanation
Indices: 175304768--175304987 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
175304758 ACCCAAGCAT
* * ** * *
175304768 CTTCGGAATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
175304806 CTTCTGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
175304846 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
175304886 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
175304926 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
175304966 CCTCGGGACTTCGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
175304988 CATTCGAATA
Statistics
Matches: 150, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
38 9 0.06
39 18 0.12
40 119 0.79
41 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:175313026 original size:40 final size:41
Alignment explanation
Indices: 175312955--175313054 Score: 98
Period size: 40 Copynumber: 2.5 Consensus size: 41
175312945 GGATATAGTG
* * * *
175312955 GCTCGCTCAAAAGCCTTC-GGACATAGCCCCGG-TTATAATA
1 GCTCGCACAAATGCCTTCGGGACATAGACCCGGATT-TAAGA
* **
175312995 GCTCGCACAAATGCCTTCGGGACTTA-ACCCGGATTTGGGA
1 GCTCGCACAAATGCCTTCGGGACATAGACCCGGATTTAAGA
*
175313035 ACTCGCACAAATGCCTTCGG
1 GCTCGCACAAATGCCTTCGG
175313055 ATCTTAGTCC
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
40 42 0.84
41 8 0.16
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (41 bp):
GCTCGCACAAATGCCTTCGGGACATAGACCCGGATTTAAGA
Found at i:175313100 original size:39 final size:38
Alignment explanation
Indices: 175313002--175313106 Score: 104
Period size: 40 Copynumber: 2.7 Consensus size: 38
175312992 ATAGCTCGCA
* * * *
175313002 CAAATGCCTTCGGGACTTAACCCGGATTTGGGAACTCG
1 CAAAAGCCTTCGGGACTTAGCCCGGATATGGGAACTAG
* **
175313040 CACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAG
1 CA-AAA-GCCTTCGGGA-CTTAGCCCGGATATGGGAAC-TAG
175313081 CAAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAAGCCTTCGGGACTTAGCCCGGA
175313107 CATCATTCGA
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
38 2 0.04
39 21 0.39
40 27 0.50
41 4 0.07
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (38 bp):
CAAAAGCCTTCGGGACTTAGCCCGGATATGGGAACTAG
Found at i:175316752 original size:40 final size:39
Alignment explanation
Indices: 175316587--175316770 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
175316577 AAATTGAATG
* * *
175316587 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
175316627 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
175316667 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
175316707 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
175316746 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
175316771 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:175316795 original size:80 final size:81
Alignment explanation
Indices: 175316627--175316815 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
175316617 GCTGGAAATT
* * * *
175316627 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
175316692 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
175316708 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
175316771 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
175316787 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
175316816 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:175324848 original size:40 final size:39
Alignment explanation
Indices: 175324683--175324866 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
175324673 AAATTGAATG
* * *
175324683 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
175324723 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
175324763 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
175324803 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
175324842 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
175324867 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:175324891 original size:80 final size:81
Alignment explanation
Indices: 175324723--175324911 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
175324713 GCTGGAAATT
* * * *
175324723 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
175324788 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
175324804 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
175324867 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
175324883 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
175324912 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:175335732 original size:20 final size:20
Alignment explanation
Indices: 175335699--175335737 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
175335689 ACTAATTGTG
*
175335699 CATGTTATGCTTAAATGTTT
1 CATGTGATGCTTAAATGTTT
*
175335719 CATGTGATGGTTAAATGTT
1 CATGTGATGCTTAAATGTT
175335738 GTATATCATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.46
Consensus pattern (20 bp):
CATGTGATGCTTAAATGTTT
Found at i:175338481 original size:48 final size:48
Alignment explanation
Indices: 175338393--175338672 Score: 285
Period size: 48 Copynumber: 5.9 Consensus size: 48
175338383 ACTAGGGCAA
* * *
175338393 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGTCATCGGTATTGT
1 TATGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGT
* * * * * * ***
175338441 TATGGGAGCTAGTATAAGACCATGTCTGGGATATGGCATCGGCCTCAA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGT
*
175338489 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGT
1 TATGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGT
* ** * * * ** ** *
175338537 TATGAGAGATAGGGTAAGACCAT-CCAGCTACATGGCATCAACGTTAG-
1 TATGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATT-GT
* *
175338584 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGGATTGT
1 TATGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGT
* *
175338632 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 TATGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCG
175338673 ACATCTTACC
Statistics
Matches: 179, Mismatches: 50, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
47 34 0.19
48 145 0.81
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (48 bp):
TATGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGT
Found at i:175338619 original size:95 final size:96
Alignment explanation
Indices: 175338390--175338671 Score: 368
Period size: 95 Copynumber: 2.9 Consensus size: 96
175338380 GATACTAGGG
* * * *
175338390 CAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGTCATCGGTATTGTTATGGGAGCTAGTA
1 CAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTG
* * * * **
175338455 TAAGACCATGTCTGGGATATGGCATCGGCCT
66 TAAGACCATGCCAGCGACATGGCATCAACCT
* *
175338486 CAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGATAGGG
1 CAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTG
* *
175338551 TAAGACCAT-CCAGCTACATGGCATCAACGT
66 TAAGACCATGCCAGCGACATGGCATCAACCT
* * * *
175338581 TAGTATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGGATTGTTATGAGAGCCAGTG
1 CAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTG
* * *
175338646 TAAGACCATGTCTGGGACATGGCATC
66 TAAGACCATGCCAGCGACATGGCATC
175338672 GACATCTTAC
Statistics
Matches: 161, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
95 81 0.50
96 80 0.50
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (96 bp):
CAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTG
TAAGACCATGCCAGCGACATGGCATCAACCT
Found at i:175346636 original size:46 final size:46
Alignment explanation
Indices: 175346586--175346761 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
175346576 TGGTTGAGCA
175346586 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
175346632 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
175346677 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
175346725 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
175346762 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:175346742 original size:93 final size:93
Alignment explanation
Indices: 175346583--175346754 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
175346573 GGATGGTTGA
* *
175346583 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
175346648 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
175346676 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
175346741 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
175346755 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:175357705 original size:40 final size:39
Alignment explanation
Indices: 175357541--175357723 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
175357531 AAATTGAATG
* *
175357541 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
175357580 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
175357620 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
175357660 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
175357699 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
175357724 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 25, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 15 0.13
40 92 0.81
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:175357748 original size:80 final size:81
Alignment explanation
Indices: 175357580--175357768 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
175357570 GCTGGAAATT
* * * *
175357580 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
175357645 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
175357661 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
175357724 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
175357740 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
175357769 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:175365822 original size:40 final size:39
Alignment explanation
Indices: 175365657--175365840 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
175365647 AAATTGAATG
* * *
175365657 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
175365697 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
175365737 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
175365777 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
175365816 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
175365841 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:175365865 original size:80 final size:81
Alignment explanation
Indices: 175365697--175365885 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
175365687 GCTGGAAATT
* * * *
175365697 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
175365762 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
175365778 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
175365841 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
175365857 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
175365886 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:175367931 original size:74 final size:74
Alignment explanation
Indices: 175367840--175367978 Score: 233
Period size: 74 Copynumber: 1.9 Consensus size: 74
175367830 TGCTAGGCCT
* ** *
175367840 TGTGGTTAATTAATTCAATTTGAAATTAGGTGCAGGTTTCACACGGCCAAGACATATGCCCGTGT
1 TGTGGTGAATTAATTCAATTTGAAATTAGGTGCAGGTTTCACACAACCAAGACATACGCCCGTGT
175367905 TCTAAGCCG
66 TCTAAGCCG
*
175367914 TGTGGTGAATTAATTCAATTTGAAATTAGGTGTAGGTTTCACACAACCAAGACATACGCCCGTGT
1 TGTGGTGAATTAATTCAATTTGAAATTAGGTGCAGGTTTCACACAACCAAGACATACGCCCGTGT
175367979 CTCTGCCCGT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 60 1.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (74 bp):
TGTGGTGAATTAATTCAATTTGAAATTAGGTGCAGGTTTCACACAACCAAGACATACGCCCGTGT
TCTAAGCCG
Found at i:175368094 original size:15 final size:16
Alignment explanation
Indices: 175368076--175368108 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
175368066 AGCCTTGTGT
175368076 CACACA-CCGTGTAGA
1 CACACACCCGTGTAGA
175368091 CACACACCCGTGTAGA
1 CACACACCCGTGTAGA
175368107 CA
1 CA
175368109 AAATGAAGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.33, C:0.36, G:0.18, T:0.12
Consensus pattern (16 bp):
CACACACCCGTGTAGA
Found at i:175369047 original size:57 final size:57
Alignment explanation
Indices: 175368959--175369121 Score: 193
Period size: 57 Copynumber: 2.8 Consensus size: 57
175368949 ACTGTATAAC
* *
175368959 AGGATTACCAGTCTAGGCTAAATCCATTATATAACATATTCTCAGAGGGGCTCGACT
1 AGGATTACCAGTCAAAGCTAAATCCATTATATAACATATTCTCAGAGGGGCTCGACT
* * ** * *
175369016 AGGATTACTAGTCAAAGCCAAATCCATTATATAATGTATTCTCATAGGGGCTCGATT
1 AGGATTACCAGTCAAAGCTAAATCCATTATATAACATATTCTCAGAGGGGCTCGACT
** * *
175369073 AGGATTACCAGTCCTAGCTAAATCC-TAATCATAACATATGCTCGAGAGG
1 AGGATTACCAGTCAAAGCTAAATCCATTAT-ATAACATATTCTC-AGAGG
175369122 TATTATACAG
Statistics
Matches: 87, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
56 3 0.03
57 80 0.92
58 4 0.05
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.28
Consensus pattern (57 bp):
AGGATTACCAGTCAAAGCTAAATCCATTATATAACATATTCTCAGAGGGGCTCGACT
Found at i:175373114 original size:15 final size:16
Alignment explanation
Indices: 175373094--175373123 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
175373084 TTTTGCTTCT
175373094 TCTTCCTTC-ACATCA
1 TCTTCCTTCAACATCA
175373109 TCTTCCTTCAACATC
1 TCTTCCTTCAACATC
175373124 TTAACCTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (16 bp):
TCTTCCTTCAACATCA
Found at i:175375360 original size:40 final size:38
Alignment explanation
Indices: 175375192--175375377 Score: 158
Period size: 40 Copynumber: 4.7 Consensus size: 38
175375182 AGAAATTGAA
* * *
175375192 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAAT
* * * *
175375233 T-ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGT
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT
* * * *
175375270 GGCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT
1 TG--ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT
175375310 TGATAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT
1 TGAT--ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT
* * *
175375350 CGTGATATCCGGGTTAAGTCCCGTAGGC
1 --TGATATCCGGGCTAAGACCCGAAGGC
175375378 CTTGGTGCGG
Statistics
Matches: 118, Mismatches: 20, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
37 4 0.03
38 3 0.03
39 2 0.02
40 104 0.88
41 1 0.01
42 4 0.03
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (38 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT
Found at i:175383439 original size:40 final size:38
Alignment explanation
Indices: 175383269--175383456 Score: 155
Period size: 40 Copynumber: 4.8 Consensus size: 38
175383259 TGAGAAATTG
* * *
175383269 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
175383309 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
175383346 AGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
175383386 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
175383426 AATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC
175383457 CTTGGTGCGG
Statistics
Matches: 120, Mismatches: 21, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
37 4 0.03
38 2 0.02
39 4 0.03
40 109 0.91
41 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:175387670 original size:71 final size:71
Alignment explanation
Indices: 175387584--175387747 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
175387574 CGATTTGTCT
175387584 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
175387649 CTTTCA
66 CTTTCA
175387655 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
175387720 CTTTCA
66 CTTTCA
175387726 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
175387748 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:175387785 original size:71 final size:70
Alignment explanation
Indices: 175387584--175387781 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
175387574 CGATTTGTCT
* * * *
175387584 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
175387649 CTTTCA
65 CTTTCA
* * * *
175387655 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
175387720 CTTTCA
65 CTTTCA
* *
175387726 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
175387782 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:175394458 original size:71 final size:71
Alignment explanation
Indices: 175394374--175394537 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
175394364 CGATTTGTCT
175394374 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
175394439 CTTTCA
66 CTTTCA
175394445 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
175394510 CTTTCA
66 CTTTCA
175394516 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
175394538 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:175394575 original size:71 final size:70
Alignment explanation
Indices: 175394374--175394571 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
175394364 CGATTTGTCT
* * * *
175394374 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
175394439 CTTTCA
65 CTTTCA
* * * *
175394445 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
175394510 CTTTCA
65 CTTTCA
* *
175394516 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
175394572 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:175397004 original size:39 final size:39
Alignment explanation
Indices: 175396944--175397162 Score: 204
Period size: 39 Copynumber: 5.6 Consensus size: 39
175396934 CGGATGATAA
* *
175396944 CCGGGCTAAGT-CCG-AGAGCATTTGAGCTAGTGGCTAATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-GCTAATT
* *
175396983 CCGGGCTAAGT-CCGAAGGCATTCGTGCGAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAAT-T
*
175397022 CCGGGCTAAGTCCCGAAGGCATTTGTGCGA--GCTATTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAAT-T
** * *
175397060 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTATTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATT
* *
175397098 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT--TACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--AT-T
175397138 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
175397163 AGCTAGTGGC
Statistics
Matches: 155, Mismatches: 14, Indels: 21
0.82 0.07 0.11
Matches are distributed among these distances:
37 21 0.14
38 27 0.17
39 61 0.39
40 46 0.30
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATT
Found at i:175397050 original size:40 final size:40
Alignment explanation
Indices: 175396982--175397162 Score: 264
Period size: 40 Copynumber: 4.7 Consensus size: 40
175396972 AGTGGCTAAT
*
175396982 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATA
175397021 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTA-T-TA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATA
* *
175397059 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTATTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATA
* * *
175397098 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATA
*
175397137 ACCGGGCTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
175397163 AGCTAGTGGC
Statistics
Matches: 132, Mismatches: 5, Indels: 9
0.90 0.03 0.06
Matches are distributed among these distances:
37 21 0.16
38 26 0.20
39 39 0.30
40 46 0.35
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATA
Found at i:175405113 original size:40 final size:41
Alignment explanation
Indices: 175405051--175405307 Score: 207
Period size: 40 Copynumber: 6.5 Consensus size: 41
175405041 CGGATGATAA
*
175405051 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCTAGTGGCTAATAT
* * *
175405091 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCT-ACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGGCTAATAT
* *
175405131 CCGGGCTAAGTCCCGAAGGCATTCGTG-T-G-AGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTA--ATAT
* * * *
175405171 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGT---TATTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTAATAT
* * ** * *
175405209 ACCGGGCTAAGTCCCAAAGGCATTTGTGCAAGTTAC-CATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTAATAT
*
175405250 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTAATAT
**
175405290 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
175405308 TACTTGGTTT
Statistics
Matches: 176, Mismatches: 26, Indels: 31
0.76 0.11 0.13
Matches are distributed among these distances:
37 2 0.01
38 3 0.02
39 45 0.26
40 121 0.69
41 4 0.02
42 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTAATAT
Found at i:175405255 original size:79 final size:80
Alignment explanation
Indices: 175405091--175405274 Score: 253
Period size: 79 Copynumber: 2.3 Consensus size: 80
175405081 GTGGCTAATT
* *
175405091 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCAAAGGCATTCG
** * *
175405156 TGTGAGCTACTATAT
66 TGCAAGCTACCATAA
* * * * *
175405171 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTATTGTA-CCGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCAAAGGCATTCG
*
175405235 TGCAAGTTACCATAA
66 TGCAAGCTACCATAA
175405250 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
175405275 AGCTAGTGGC
Statistics
Matches: 91, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
79 57 0.63
80 34 0.37
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCAAAGGCATTCG
TGCAAGCTACCATAA
Found at i:175405288 original size:119 final size:118
Alignment explanation
Indices: 175405091--175405307 Score: 294
Period size: 119 Copynumber: 1.8 Consensus size: 118
175405081 GTGGCTAATT
* * * *
175405091 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCAAAGGCATTCGTGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTCG
* **
175405156 TGTGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTATTGTA
66 AGTGAGCTACTATATCC-GGCTAAACCCCGAAGGCGTTTGTGCGAGTTATTGTA
* * *
175405210 CCGGGCTAAGTCCCAAAGGCATTTGTGCAAGTTACCATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCAAAGGCATTCGTGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTCG
*
175405275 AGCT-AG-TGGCTATATCCGGCTAAACCCCGAAGG
66 AG-TGAGCT-ACTATATCCGGCTAAACCCCGAAGG
175405308 TACTTGGTTT
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
118 15 0.18
119 69 0.81
120 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (118 bp):
CCGGGCTAAGTCCCAAAGGCATTCGTGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTCG
AGTGAGCTACTATATCCGGCTAAACCCCGAAGGCGTTTGTGCGAGTTATTGTA
Found at i:175405296 original size:79 final size:79
Alignment explanation
Indices: 175405091--175405297 Score: 247
Period size: 79 Copynumber: 2.6 Consensus size: 79
175405081 GTGGCTAATT
* *
175405091 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCAAAGGCATTCG
** * *
175405156 TGTGAGCTACTATAT
65 TGCAAGCTACCATAA
* * * *
175405171 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTATTGTA-CCGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCAAAGGCATTCG
*
175405235 TGCAAGTTACCATAA
65 TGCAAGCTACCATAA
* * *
175405250 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAA
175405298 ACCCCGAAGG
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
78 1 0.01
79 70 0.65
80 36 0.34
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCAAAGGCATTCGT
GCAAGCTACCATAA
Found at i:175419828 original size:22 final size:22
Alignment explanation
Indices: 175419800--175419846 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
175419790 AGATATAGAG
175419800 TTTCAGACCAGGGATAGAGTGT
1 TTTCAGACCAGGGATAGAGTGT
175419822 TTTCAGACCAGGGATAGAGTGT
1 TTTCAGACCAGGGATAGAGTGT
175419844 TTT
1 TTT
175419847 TGAAAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.32
Consensus pattern (22 bp):
TTTCAGACCAGGGATAGAGTGT
Found at i:175421590 original size:43 final size:42
Alignment explanation
Indices: 175421542--175421658 Score: 157
Period size: 43 Copynumber: 2.8 Consensus size: 42
175421532 ATGTGTTTTT
*
175421542 GTGTAAGACCACGTCTGGAACATTGGCATCGATATGTGATTAA
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATT-A
* * *
175421585 GTGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGATTC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTA
*
175421626 GTGTAAGACC-CTGTCTGGGACAGTGGCATCGAT
1 GTGTAAGACCAC-GTCTGGGACATTGGCATCGAT
175421659 TTATCGATAT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
41 28 0.42
42 9 0.14
43 29 0.44
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTA
Found at i:175421642 original size:41 final size:42
Alignment explanation
Indices: 175421542--175421752 Score: 178
Period size: 41 Copynumber: 4.9 Consensus size: 42
175421532 ATGTGTTTTT
* * *
175421542 GTGTAAGACCAC-GTCTGGAACATTGGCATCGATATGTGATTAA
1 GTGTAAGACC-CTGTCTGGGACATTGGCATCG-TATTTGATTAC
*
175421585 GTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATT-C
1 GTGTAAGACCCTGTCTGGGACATTGGCATCGTATTTGATTAC
*
175421626 GTGTAAGACCCTGTCTGGGACAGTGGCATCGATTTATCGATATGTGATTAC
1 GTGTAAGACCCTGTCTGGGACATTGGCATCG-----T--AT-T-TGATTAC
* * * *
175421677 ATGTAAGACCATGTCTGGGACATCGACATCGTATTTGATT-C
1 GTGTAAGACCCTGTCTGGGACATTGGCATCGTATTTGATTAC
* * * *
175421718 GTGTAAAACCCTGCCTGGGATAGTGGCATCG-ATTT
1 GTGTAAGACCCTGTCTGGGACATTGGCATCGTATTT
175421753 ATCAATATGT
Statistics
Matches: 138, Mismatches: 19, Indels: 25
0.76 0.10 0.14
Matches are distributed among these distances:
40 4 0.03
41 53 0.38
42 13 0.09
43 29 0.21
44 2 0.01
46 2 0.01
48 2 0.01
49 1 0.01
50 5 0.04
51 27 0.20
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCCTGTCTGGGACATTGGCATCGTATTTGATTAC
Found at i:175421643 original size:84 final size:84
Alignment explanation
Indices: 175421542--175421750 Score: 251
Period size: 92 Copynumber: 2.4 Consensus size: 84
175421532 ATGTGTTTTT
* *
175421542 GTGTAAGACCAC-GTCTGGAACATTGGCATCGATATGTGATTA-AGTGTAAGACCATGTCTGGGA
1 GTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATGTGATTACA-TGTAAGACCATGTCTGGGA
* *
175421605 CATTGGCATCGTATTTGATTC
64 CATCGACATCGTATTTGATTC
175421626 GTGTAAGACCCTGTCTGGGACAGTGGCATCGATTTATCGATATGTGATTACATGTAAGACCATGT
1 GTGTAAGACCCTGTCTGGGACAGTGG---C-----ATCGATATGTGATTACATGTAAGACCATGT
175421691 CTGGGACATCGACATCGTATTTGATTC
58 CTGGGACATCGACATCGTATTTGATTC
* * *
175421718 GTGTAAAACCCTGCCTGGGATAGTGGCATCGAT
1 GTGTAAGACCCTGTCTGGGACAGTGGCATCGAT
175421751 TTATCAATAT
Statistics
Matches: 108, Mismatches: 7, Indels: 20
0.80 0.05 0.15
Matches are distributed among these distances:
83 1 0.01
84 28 0.26
87 1 0.01
89 1 0.01
92 76 0.70
93 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (84 bp):
GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATTACATGTAAGACCATGTCTGGGACA
TCGACATCGTATTTGATTC
Found at i:175421683 original size:92 final size:92
Alignment explanation
Indices: 175421569--175421802 Score: 353
Period size: 92 Copynumber: 2.5 Consensus size: 92
175421559 GAACATTGGC
*
175421569 ATCGATATGTGATTA-AGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTCGTGTAAG
1 ATCGATATGTGATTACA-TGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTCGTGTAAA
*
175421633 ACCCTGTCTGGGACAGTGGCATCGATTT
65 ACCCTGCCTGGGACAGTGGCATCGATTT
* *
175421661 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATCGACATCGTATTTGATTCGTGTAAAA
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTCGTGTAAAA
*
175421726 CCCTGCCTGGGATAGTGGCATCGATTT
66 CCCTGCCTGGGACAGTGGCATCGATTT
* * * * * *
175421753 ATCAATATGTGATTGCATGTAAGACCACGTCTAGGACGTTGGCATTGTAT
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
175421803 GATATATGTG
Statistics
Matches: 128, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
92 127 0.99
93 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (92 bp):
ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTCGTGTAAAA
CCCTGCCTGGGACAGTGGCATCGATTT
Found at i:175421695 original size:51 final size:50
Alignment explanation
Indices: 175421612--175421797 Score: 151
Period size: 51 Copynumber: 3.9 Consensus size: 50
175421602 GGACATTGGC
* * *
175421612 ATCG-TATTTGATTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATTT
1 ATCGATATGTGATTCATGTAAGACCATGTCTGGGACAGTGGCATCGATTT
*
175421661 ATCGATATGTGATTACATGTAAGACCATGTCTGGG--A----CATCGA--C
1 ATCGATATGTGATT-CATGTAAGACCATGTCTGGGACAGTGGCATCGATTT
* * * * * *
175421704 ATCG-TATTTGATTCGTGTAAAACCCTGCCTGGGATAGTGGCATCGATTT
1 ATCGATATGTGATTCATGTAAGACCATGTCTGGGACAGTGGCATCGATTT
* * *
175421753 ATCAATATGTGATTGCATGTAAGACCACGTCTAGGAC-GTTGGCAT
1 ATCGATATGTGATT-CATGTAAGACCATGTCTGGGACAG-TGGCAT
175421798 TGTATGATAT
Statistics
Matches: 105, Mismatches: 19, Indels: 24
0.71 0.13 0.16
Matches are distributed among these distances:
41 16 0.15
42 8 0.08
43 5 0.05
45 6 0.06
47 6 0.06
49 8 0.08
50 17 0.16
51 39 0.37
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (50 bp):
ATCGATATGTGATTCATGTAAGACCATGTCTGGGACAGTGGCATCGATTT
Found at i:175422541 original size:17 final size:18
Alignment explanation
Indices: 175422519--175422560 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
175422509 CATGTTTACA
175422519 TGGTTGAGTA-AATGA-TG
1 TGGTTGA-TATAATGATTG
*
175422536 TGGTTGATATATTGATTG
1 TGGTTGATATAATGATTG
175422554 TGGTTGA
1 TGGTTGA
175422561 CATATTCGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 2 0.09
17 11 0.50
18 9 0.41
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (18 bp):
TGGTTGATATAATGATTG
Found at i:175425644 original size:40 final size:40
Alignment explanation
Indices: 175425589--175425773 Score: 309
Period size: 40 Copynumber: 4.6 Consensus size: 40
175425579 CGGATGATAA
175425589 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
175425629 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* *
175425669 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* *
175425709 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
*
175425749 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
175425774 AGCCAGTAGC
Statistics
Matches: 136, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
39 1 0.01
40 135 0.99
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:175428787 original size:38 final size:39
Alignment explanation
Indices: 175428655--175428847 Score: 271
Period size: 39 Copynumber: 4.9 Consensus size: 39
175428645 TCGTTCAAAC
* * ** * *
175428655 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* *
175428695 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
175428735 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
175428774 -CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
* *
175428812 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
175428848 TTCATACACA
Statistics
Matches: 140, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 38 0.27
39 61 0.44
40 41 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:175428803 original size:77 final size:78
Alignment explanation
Indices: 175428655--175428847 Score: 271
Period size: 77 Copynumber: 2.5 Consensus size: 78
175428645 TCGTTCAAAC
* * ** *
175428655 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCAC-AATGCCTTCGGGACTTAACCCGGATATC
175428720 ACAACTCGCACAATT
64 ACAACTCGCACAATT
* * *
175428735 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTCCTTCGGG-CTTAGCCCGGATATCAT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATGCCTTCGGGACTTAACCCGGATATCAC
175428799 AACTCGCACAATT
66 AACTCGCACAATT
* *
175428812 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
175428848 TTCATACACA
Statistics
Matches: 103, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
77 62 0.60
78 11 0.11
79 21 0.20
80 9 0.09
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (78 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATGCCTTCGGGACTTAACCCGGATATCAC
AACTCGCACAATT
Found at i:175431314 original size:40 final size:40
Alignment explanation
Indices: 175431259--175431462 Score: 284
Period size: 40 Copynumber: 5.1 Consensus size: 40
175431249 TGAATGATAC
* * * *
175431259 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
175431299 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
175431339 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
175431379 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* ** *
175431419 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
175431459 CCGG
1 CCGG
175431463 CTAAATTCCG
Statistics
Matches: 147, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 145 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:175431392 original size:80 final size:80
Alignment explanation
Indices: 175431255--175431466 Score: 320
Period size: 80 Copynumber: 2.7 Consensus size: 80
175431245 CAATTGAATG
* * * *
175431255 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGTTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
175431319 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* *
175431335 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
175431400 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
175431415 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
175431467 ATTCCGAAGA
Statistics
Matches: 120, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
79 6 0.05
80 112 0.93
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:175439585 original size:40 final size:40
Alignment explanation
Indices: 175439526--175439733 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
175439516 CAATTGAATG
* * * *
175439526 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
175439566 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
175439606 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
175439646 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
175439686 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
175439726 ATATCCGG
1 ATATCCGG
175439734 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:175439664 original size:80 final size:80
Alignment explanation
Indices: 175439527--175439733 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
175439517 AATTGAATGA
* * ** * * *
175439527 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
175439592 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
175439605 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
175439670 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
175439687 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
175439734 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:175447744 original size:40 final size:40
Alignment explanation
Indices: 175447685--175447892 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
175447675 CAATTGAATG
* * * *
175447685 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
175447725 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
175447765 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
175447805 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
175447845 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
175447885 ATATCCGG
1 ATATCCGG
175447893 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:175447823 original size:80 final size:80
Alignment explanation
Indices: 175447686--175447892 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
175447676 AATTGAATGA
* * ** * * *
175447686 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
175447751 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
175447764 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
175447829 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
175447846 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
175447893 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:175450042 original size:45 final size:45
Alignment explanation
Indices: 175449968--175450066 Score: 162
Period size: 45 Copynumber: 2.2 Consensus size: 45
175449958 TATCGTACAG
*
175449968 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
175450013 TATTATTTGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
175450058 TACTATTCG
1 TACTATTCG
175450067 ACTCATGATC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.32
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:175453246 original size:27 final size:27
Alignment explanation
Indices: 175453215--175453364 Score: 167
Period size: 27 Copynumber: 5.6 Consensus size: 27
175453205 TTAGTTTACC
*
175453215 AAATTACTGAAATACCCTCAACTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
* *
175453242 AAATTACT-AAAGTACCCCCAATTTATA
1 AAATTACTGAAA-TACCCTCAATTTGTA
** * *
175453269 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
* * * *
175453296 AAATTACAGAAATACCCTTAGTTTGCA
1 AAATTACTGAAATACCCTCAATTTGTA
* *
175453323 AAATTACTGAAATAACCTCGATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
175453350 AAATTACTGAAATAC
1 AAATTACTGAAATAC
175453365 TCCTGTAAGA
Statistics
Matches: 99, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
26 3 0.03
27 93 0.94
28 3 0.03
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAATTTGTA
Found at i:175453363 original size:81 final size:82
Alignment explanation
Indices: 175453215--175453368 Score: 186
Period size: 81 Copynumber: 1.9 Consensus size: 82
175453205 TTAGTTTACC
* * *
175453215 AAATTACTGAAATACCCTCAACTTGTAAAATTACTAAAGTACCCCCAATTTATAAAATTACCCAA
1 AAATTACAGAAATACCCTCAACTTGCAAAATTACTAAAGTAACCCCAATTTATAAAATTACCCAA
175453280 ATA-TCCTCGATTTGTA
66 ATACTCCTCGATTTGTA
* ** * * * **
175453296 AAATTACAGAAATACCCTTAGTTTGCAAAATTACTGAAA-TAACCTCGATTTGTAAAATTACTGA
1 AAATTACAGAAATACCCTCAACTTGCAAAATTACT-AAAGTAACCCCAATTTATAAAATTACCCA
175453360 AATACTCCT
65 AATACTCCT
175453369 GTAAGATAGA
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
81 53 0.88
82 7 0.12
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (82 bp):
AAATTACAGAAATACCCTCAACTTGCAAAATTACTAAAGTAACCCCAATTTATAAAATTACCCAA
ATACTCCTCGATTTGTA
Found at i:175453406 original size:27 final size:27
Alignment explanation
Indices: 175453376--175453556 Score: 258
Period size: 27 Copynumber: 6.7 Consensus size: 27
175453366 CCTGTAAGAT
175453376 AGAATTACTATTTTACCCTCGATTTAC
1 AGAATTACTATTTTACCCTCGATTTAC
*
175453403 AGAATTA-TCATTTTACCCTCGATTTAT
1 AGAATTACT-ATTTTACCCTCGATTTAC
175453430 AGAATTACTATTTTACCCTCGATTTAC
1 AGAATTACTATTTTACCCTCGATTTAC
* *
175453457 AGAATTA-TCGTTTTACCCTCGATTTAT
1 AGAATTACT-ATTTTACCCTCGATTTAC
*
175453484 AGAATTACTATTTTACCCTCGATTTAT
1 AGAATTACTATTTTACCCTCGATTTAC
** *
175453511 AGAATTACCGTCTTACCCTCGATTTAC
1 AGAATTACTATTTTACCCTCGATTTAC
*
175453538 AGAATTACCATTTTACCCT
1 AGAATTACTATTTTACCCT
175453557 TAATGTAAAA
Statistics
Matches: 139, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
26 2 0.01
27 135 0.97
28 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
AGAATTACTATTTTACCCTCGATTTAC
Found at i:175453582 original size:54 final size:54
Alignment explanation
Indices: 175453376--175453601 Score: 224
Period size: 54 Copynumber: 4.2 Consensus size: 54
175453366 CCTGTAAGAT
* * *
175453376 AGAATTACTATTTTACCCTCGATTTACAGAATTATCAT-T-TTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAAAGAATTA-C-TGTATTACCCTCGATTTAC
* * * *
175453430 AGAATTACTATTTTACCCTCGATTTACAGAATTA-TCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAAAGAATTACT-GTATTACCCTCGATTTAC
* * * *
175453484 AGAATTACTATTTTACCCTCGATTTATAGAATTACCGTCTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAAAGAATTACTGTATTACCCTCGATTTAC
** * * * * * *
175453538 AGAATTACCATTTTACCCTTAATGTAAAAAATTACTGAAATACCCTTGGTTTAC
1 AGAATTACCATTTTACCCTCGATTTAAAGAATTACTGTATTACCCTCGATTTAC
*
175453592 AAAATTACCA
1 AGAATTACCA
175453602 AAATACCCTC
Statistics
Matches: 151, Mismatches: 17, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
51 1 0.01
53 1 0.01
54 149 0.99
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (54 bp):
AGAATTACCATTTTACCCTCGATTTAAAGAATTACTGTATTACCCTCGATTTAC
Found at i:175453582 original size:81 final size:81
Alignment explanation
Indices: 175453376--175453601 Score: 213
Period size: 81 Copynumber: 2.8 Consensus size: 81
175453366 CCTGTAAGAT
* * * * * ** *
175453376 AGAATTACTATTTTACCCTCGATTTACAGAATTA-TCATTTTACCCTCGATTTATAGAATTACTA
1 AGAATTACCATTTTACCCTCAATGTAAAAAATTACT-ATAATACCCTCGATTTATAGAATTACCA
*
175453440 TTTTACCCTCGATTTAC
65 TCTTACCCTCGATTTAC
* * * * * * ** *
175453457 AGAATTATCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACCGT
1 AGAATTACCATTTTACCCTCAATGTAAAAAATTACTATAATACCCTCGATTTATAGAATTACCAT
175453522 CTTACCCTCGATTTAC
66 CTTACCCTCGATTTAC
* * * * *
175453538 AGAATTACCATTTTACCCTTAATGTAAAAAATTACTGA-AATACCCTTGGTTTACAAAATTACCA
1 AGAATTACCATTTTACCCTCAATGTAAAAAATTACT-ATAATACCCTCGATTTATAGAATTACCA
175453602 AAATACCCTC
Statistics
Matches: 122, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
81 120 0.98
82 2 0.02
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (81 bp):
AGAATTACCATTTTACCCTCAATGTAAAAAATTACTATAATACCCTCGATTTATAGAATTACCAT
CTTACCCTCGATTTAC
Found at i:175453595 original size:27 final size:27
Alignment explanation
Indices: 175453565--175453693 Score: 132
Period size: 27 Copynumber: 4.8 Consensus size: 27
175453555 CTTAATGTAA
** *
175453565 AAAATTACTGAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTTGGTTTAT
* * **
175453592 AAAATTACCAAAATACCCTCGATCAAT
1 AAAATTACCAAAATACCCTTGGTTTAT
* *
175453619 AAAATTACCAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTAT
** *
175453646 AAAATTACCAAAATACCCTTACTTTGT
1 AAAATTACCAAAATACCCTTGGTTTAT
* *
175453673 GAAATTACCGAAATACCCTTG
1 AAAATTACCAAAATACCCTTG
175453694 TAGGGTAGAA
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTAT
Found at i:175453609 original size:54 final size:53
Alignment explanation
Indices: 175453524--175453693 Score: 151
Period size: 54 Copynumber: 3.2 Consensus size: 53
175453514 ATTACCGTCT
* * * *** *
175453524 TACCCTCGATTTACAGAATTACCATTTTACCCTTAATGTAAAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTTAAT-TAAAAAATTACCGAAA
** * *
175453578 TACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAATAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTTAATTAA-AAAATTACCGAAA
* ** * ***
175453632 TACCATTGGTTTGTAAAATTACCAAAATACCCTTACTTTGTGAAATTACCGAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTTA-ATTAAAAAATTACCGAAA
175453686 TACCCTTG
1 TACCCTTG
175453694 TAGGGTAGAA
Statistics
Matches: 91, Mismatches: 23, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
53 2 0.02
54 88 0.97
55 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (53 bp):
TACCCTTGGTTTACAAAATTACCAAAATACCCTTAATTAAAAAATTACCGAAA
Found at i:175453705 original size:27 final size:27
Alignment explanation
Indices: 175453675--175453924 Score: 358
Period size: 27 Copynumber: 9.3 Consensus size: 27
175453665 TACTTTGTGA
*
175453675 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
175453702 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
175453729 AATTACTGAAATACCCCTGTAGGTTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
*
175453756 AATTACCGAAATACCCCTGTTGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
175453783 AATAACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
175453810 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
175453837 AATGACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
175453864 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
175453891 AATTACCGAGATACCCTTGTGGGGTTA-
1 AATTACCGAAATACCCCTGTAGGG-TAG
175453918 AATTACC
1 AATTACC
175453925 ATTTTGCCCC
Statistics
Matches: 200, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
27 198 0.99
28 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:175453706 original size:81 final size:81
Alignment explanation
Indices: 175453621--175453908 Score: 291
Period size: 81 Copynumber: 3.6 Consensus size: 81
175453611 CGATCAATAA
* ** * *
175453621 AATTACCAAAATACCATTGGT-TTGTAAAATTACCAAAATACCCTTACTTTGTGAAATTACCGAA
1 AATTACCAAAATACCCTT-GTAGGGTAGAATTACCGAAATACCCTTACTTTGTGAAATTACCGAA
175453685 ATACCCTTGTAGGGTAG
65 ATACCCTTGTAGGGTAG
* * ** *
175453702 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGTTAT--AATTACCGA
1 AATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATA-CCCT-TACTTTGTGAAATTACCGA
* *
175453765 AATACCCCTGTTGGGTAG
64 AATACCCTTGTAGGGTAG
* * * * * *
175453783 AATAACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCC---CTGTAGGGTAGAATGACCG
1 AATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTACT-TTGTG-A-AATTACCG
175453845 AAATACCCTTGTAGGGTAG
63 AAATACCCTTGTAGGGTAG
* * *
175453864 AAATACCAAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTT
1 AATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTT
175453909 GTGGGGTTAA
Statistics
Matches: 170, Mismatches: 27, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
77 1 0.01
80 5 0.03
81 155 0.91
82 4 0.02
83 5 0.03
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.26
Consensus pattern (81 bp):
AATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTACTTTGTGAAATTACCGAAA
TACCCTTGTAGGGTAG
Found at i:175454359 original size:25 final size:25
Alignment explanation
Indices: 175454329--175454424 Score: 93
Period size: 25 Copynumber: 3.6 Consensus size: 25
175454319 CATTCACATT
*
175454329 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
*
175454354 CCGATTCTGATTTTGATTCTGTTACCTGATA
1 -C-----TGATTCTGATTCTGTTACCTGATA
* * *
175454385 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTTACCTGATA
175454410 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
175454425 ATTCTAGTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 11
0.80 0.05 0.14
Matches are distributed among these distances:
25 35 0.57
26 1 0.02
30 1 0.02
31 24 0.39
ACGTcount: A:0.19, C:0.20, G:0.16, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTGATA
Found at i:175454364 original size:31 final size:31
Alignment explanation
Indices: 175454326--175454396 Score: 133
Period size: 31 Copynumber: 2.3 Consensus size: 31
175454316 TTGCATTCAC
175454326 ATTCTGATTTTGATTCTGTTACCTGATACCG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
*
175454357 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
175454388 ATTCTGATT
1 ATTCTGATT
175454397 CTGTCACCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACCG
Found at i:175454370 original size:6 final size:6
Alignment explanation
Indices: 175454326--175454429 Score: 70
Period size: 6 Copynumber: 16.8 Consensus size: 6
175454316 TTGCATTCAC
* * * *
175454326 ATTCTG ATTTTG ATTCTG -TTACCTG ATACCG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
175454375 -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
175454425 ATTCT
1 ATTCT
175454430 AGTTCTGGTA
Statistics
Matches: 75, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
5 5 0.07
6 59 0.79
7 8 0.11
8 3 0.04
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:175456783 original size:45 final size:45
Alignment explanation
Indices: 175456709--175456807 Score: 171
Period size: 45 Copynumber: 2.2 Consensus size: 45
175456699 TATCGTACAG
175456709 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
175456754 TATTATTTGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
175456799 TACTATTCG
1 TACTATTCG
175456808 ACTCATGATC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.31
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:175459985 original size:27 final size:27
Alignment explanation
Indices: 175459954--175460103 Score: 167
Period size: 27 Copynumber: 5.6 Consensus size: 27
175459944 TTAGTTTACC
*
175459954 AAATTACTGAAATACCCTCAACTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
* *
175459981 AAATTACT-AAAGTACCCCCAATTTATA
1 AAATTACTGAAA-TACCCTCAATTTGTA
** * *
175460008 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
* * * *
175460035 AAATTACAGAAATACCCTTAGTTTGCA
1 AAATTACTGAAATACCCTCAATTTGTA
* *
175460062 AAATTACTGAAATAACCTCGATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
175460089 AAATTACTGAAATAC
1 AAATTACTGAAATAC
175460104 TCCTGTAAGA
Statistics
Matches: 99, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
26 3 0.03
27 93 0.94
28 3 0.03
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAATTTGTA
Found at i:175460102 original size:81 final size:82
Alignment explanation
Indices: 175459954--175460107 Score: 186
Period size: 81 Copynumber: 1.9 Consensus size: 82
175459944 TTAGTTTACC
* * *
175459954 AAATTACTGAAATACCCTCAACTTGTAAAATTACTAAAGTACCCCCAATTTATAAAATTACCCAA
1 AAATTACAGAAATACCCTCAACTTGCAAAATTACTAAAGTAACCCCAATTTATAAAATTACCCAA
175460019 ATA-TCCTCGATTTGTA
66 ATACTCCTCGATTTGTA
* ** * * * **
175460035 AAATTACAGAAATACCCTTAGTTTGCAAAATTACTGAAA-TAACCTCGATTTGTAAAATTACTGA
1 AAATTACAGAAATACCCTCAACTTGCAAAATTACT-AAAGTAACCCCAATTTATAAAATTACCCA
175460099 AATACTCCT
65 AATACTCCT
175460108 GTAAGATAGA
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
81 53 0.88
82 7 0.12
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (82 bp):
AAATTACAGAAATACCCTCAACTTGCAAAATTACTAAAGTAACCCCAATTTATAAAATTACCCAA
ATACTCCTCGATTTGTA
Found at i:175460145 original size:27 final size:27
Alignment explanation
Indices: 175460115--175460295 Score: 258
Period size: 27 Copynumber: 6.7 Consensus size: 27
175460105 CCTGTAAGAT
175460115 AGAATTACTATTTTACCCTCGATTTAC
1 AGAATTACTATTTTACCCTCGATTTAC
*
175460142 AGAATTA-TCATTTTACCCTCGATTTAT
1 AGAATTACT-ATTTTACCCTCGATTTAC
175460169 AGAATTACTATTTTACCCTCGATTTAC
1 AGAATTACTATTTTACCCTCGATTTAC
* *
175460196 AGAATTA-TCGTTTTACCCTCGATTTAT
1 AGAATTACT-ATTTTACCCTCGATTTAC
*
175460223 AGAATTACTATTTTACCCTCGATTTAT
1 AGAATTACTATTTTACCCTCGATTTAC
** *
175460250 AGAATTACCGTCTTACCCTCGATTTAC
1 AGAATTACTATTTTACCCTCGATTTAC
*
175460277 AGAATTACCATTTTACCCT
1 AGAATTACTATTTTACCCT
175460296 TAATGTAAAA
Statistics
Matches: 139, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
26 2 0.01
27 135 0.97
28 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
AGAATTACTATTTTACCCTCGATTTAC
Found at i:175460321 original size:54 final size:54
Alignment explanation
Indices: 175460115--175460340 Score: 224
Period size: 54 Copynumber: 4.2 Consensus size: 54
175460105 CCTGTAAGAT
* * *
175460115 AGAATTACTATTTTACCCTCGATTTACAGAATTATCAT-T-TTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAAAGAATTA-C-TGTATTACCCTCGATTTAC
* * * *
175460169 AGAATTACTATTTTACCCTCGATTTACAGAATTA-TCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAAAGAATTACT-GTATTACCCTCGATTTAC
* * * *
175460223 AGAATTACTATTTTACCCTCGATTTATAGAATTACCGTCTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAAAGAATTACTGTATTACCCTCGATTTAC
** * * * * * *
175460277 AGAATTACCATTTTACCCTTAATGTAAAAAATTACTGAAATACCCTTGGTTTAC
1 AGAATTACCATTTTACCCTCGATTTAAAGAATTACTGTATTACCCTCGATTTAC
*
175460331 AAAATTACCA
1 AGAATTACCA
175460341 AAATACCCTC
Statistics
Matches: 151, Mismatches: 17, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
51 1 0.01
53 1 0.01
54 149 0.99
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (54 bp):
AGAATTACCATTTTACCCTCGATTTAAAGAATTACTGTATTACCCTCGATTTAC
Found at i:175460321 original size:81 final size:81
Alignment explanation
Indices: 175460115--175460340 Score: 213
Period size: 81 Copynumber: 2.8 Consensus size: 81
175460105 CCTGTAAGAT
* * * * * ** *
175460115 AGAATTACTATTTTACCCTCGATTTACAGAATTA-TCATTTTACCCTCGATTTATAGAATTACTA
1 AGAATTACCATTTTACCCTCAATGTAAAAAATTACT-ATAATACCCTCGATTTATAGAATTACCA
*
175460179 TTTTACCCTCGATTTAC
65 TCTTACCCTCGATTTAC
* * * * * * ** *
175460196 AGAATTATCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACCGT
1 AGAATTACCATTTTACCCTCAATGTAAAAAATTACTATAATACCCTCGATTTATAGAATTACCAT
175460261 CTTACCCTCGATTTAC
66 CTTACCCTCGATTTAC
* * * * *
175460277 AGAATTACCATTTTACCCTTAATGTAAAAAATTACTGA-AATACCCTTGGTTTACAAAATTACCA
1 AGAATTACCATTTTACCCTCAATGTAAAAAATTACT-ATAATACCCTCGATTTATAGAATTACCA
175460341 AAATACCCTC
Statistics
Matches: 122, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
81 120 0.98
82 2 0.02
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (81 bp):
AGAATTACCATTTTACCCTCAATGTAAAAAATTACTATAATACCCTCGATTTATAGAATTACCAT
CTTACCCTCGATTTAC
Found at i:175460334 original size:27 final size:27
Alignment explanation
Indices: 175460304--175460432 Score: 132
Period size: 27 Copynumber: 4.8 Consensus size: 27
175460294 CTTAATGTAA
** *
175460304 AAAATTACTGAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTTGGTTTAT
* * **
175460331 AAAATTACCAAAATACCCTCGATCAAT
1 AAAATTACCAAAATACCCTTGGTTTAT
* *
175460358 AAAATTACCAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTAT
** *
175460385 AAAATTACCAAAATACCCTTACTTTGT
1 AAAATTACCAAAATACCCTTGGTTTAT
* *
175460412 GAAATTACCGAAATACCCTTG
1 AAAATTACCAAAATACCCTTG
175460433 TAGGGTAGAA
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTAT
Found at i:175460348 original size:54 final size:53
Alignment explanation
Indices: 175460263--175460432 Score: 151
Period size: 54 Copynumber: 3.2 Consensus size: 53
175460253 ATTACCGTCT
* * * *** *
175460263 TACCCTCGATTTACAGAATTACCATTTTACCCTTAATGTAAAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTTAAT-TAAAAAATTACCGAAA
** * *
175460317 TACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAATAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTTAATTAA-AAAATTACCGAAA
* ** * ***
175460371 TACCATTGGTTTGTAAAATTACCAAAATACCCTTACTTTGTGAAATTACCGAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTTA-ATTAAAAAATTACCGAAA
175460425 TACCCTTG
1 TACCCTTG
175460433 TAGGGTAGAA
Statistics
Matches: 91, Mismatches: 23, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
53 2 0.02
54 88 0.97
55 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (53 bp):
TACCCTTGGTTTACAAAATTACCAAAATACCCTTAATTAAAAAATTACCGAAA
Found at i:175460444 original size:27 final size:27
Alignment explanation
Indices: 175460414--175460662 Score: 340
Period size: 27 Copynumber: 9.3 Consensus size: 27
175460404 TACTTTGTGA
*
175460414 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
175460441 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
175460468 AATTACTGAAATACCCCTGTAGGTTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
*
175460495 AATTACCGAAATACCCCTGTTGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
175460522 AATAACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
175460549 AATTACCGAAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
175460575 AATGACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
175460602 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
175460629 AATTACCGAGATACCCTTGTGGGGTTA-
1 AATTACCGAAATACCCCTGTAGGG-TAG
175460656 AATTACC
1 AATTACC
175460663 ATTTTGCCCC
Statistics
Matches: 198, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 25 0.13
27 171 0.86
28 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:175460445 original size:81 final size:79
Alignment explanation
Indices: 175460360--175460645 Score: 299
Period size: 81 Copynumber: 3.6 Consensus size: 79
175460350 CGATCAATAA
* ** * *
175460360 AATTACCAAAATACCATTGGT-TTGTAAAATTACCAAAATACCCT-TACTTTGTGAAATTACCGA
1 AATTACCAAAATACCCTT-GTAGGGTAGAATTACCGAAATACCCTGTA--TTGT-AAATTACCGA
175460423 AATACCCTTGTAGGGTAG
62 AATACCCTTGTAGGGTAG
** * *
175460441 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTA-GGTTATAATTACCGAA
1 AATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATA-CCCTGTATTG-TA-AATTACCGAA
* *
175460505 ATACCCCTGTTGGGTAG
63 ATACCCTTGTAGGGTAG
* * * ** *
175460522 AATAACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTGTAGGGTAGAATGACCGAAAT
1 AATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTGTATTGTA-AATTACCGAAAT
175460587 ACCCTTGTAGGGTAG
65 ACCCTTGTAGGGTAG
* * *
175460602 AAATACCAAAATACCCCTGTAGGGTAGAATTACCGAGATACCCT
1 AATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCT
175460646 TGTGGGGTTA
Statistics
Matches: 176, Mismatches: 23, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
80 77 0.44
81 93 0.53
82 4 0.02
83 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (79 bp):
AATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTGTATTGTAAATTACCGAAATA
CCCTTGTAGGGTAG
Found at i:175460614 original size:80 final size:80
Alignment explanation
Indices: 175460418--175460645 Score: 332
Period size: 80 Copynumber: 2.8 Consensus size: 80
175460408 TTGTGAAATT
* * * *
175460418 ACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACC
1 ACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAATA-C
* * *
175460483 CCTGTAGGTTATAATT
65 CCTGTAGGGTAGAATG
* *
175460499 ACCGAAATACCCCTGTTGGGTAG-AATAACCGAAATACCCCTGTAGGGTAGAATTACCGAAATAC
1 ACCGAAATACCCTTGTAGGGTAGAAAT-ACCGAAATACCCCTGTAGGGTAGAATTACCGAAATAC
175460563 CCTGTAGGGTAGAATG
65 CCTGTAGGGTAGAATG
* *
175460579 ACCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTACCGAGATACC
1 ACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACC
175460644 CT
66 CT
175460646 TGTGGGGTTA
Statistics
Matches: 132, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
80 75 0.57
81 57 0.43
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (80 bp):
ACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACC
CTGTAGGGTAGAATG
Found at i:175461097 original size:25 final size:25
Alignment explanation
Indices: 175461067--175461162 Score: 93
Period size: 25 Copynumber: 3.6 Consensus size: 25
175461057 CATTCACATT
*
175461067 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
*
175461092 CCGATTCTGATTTTGATTCTGTTACCTGATA
1 -C-----TGATTCTGATTCTGTTACCTGATA
* * *
175461123 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTTACCTGATA
175461148 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
175461163 ATTCTAGTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 11
0.80 0.05 0.14
Matches are distributed among these distances:
25 35 0.57
26 1 0.02
30 1 0.02
31 24 0.39
ACGTcount: A:0.19, C:0.20, G:0.16, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTGATA
Found at i:175461102 original size:31 final size:31
Alignment explanation
Indices: 175461064--175461134 Score: 133
Period size: 31 Copynumber: 2.3 Consensus size: 31
175461054 TTGCATTCAC
175461064 ATTCTGATTTTGATTCTGTTACCTGATACCG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
*
175461095 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
175461126 ATTCTGATT
1 ATTCTGATT
175461135 CTGTCACCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACCG
Done.