Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 564 of 770
Found at i:175753243 original size:22 final size:22
Alignment explanation
Indices: 175753190--175753265 Score: 91
Period size: 22 Copynumber: 3.4 Consensus size: 22
175753180 CCTGAGCTGA
*
175753190 TGAATAGTAAGCTCTAAT-GAGC
1 TGAACAGTAAGCTCT-ATCGAGC
*
175753212 TGAAACAGTAAGCTCTATCGAGT
1 TG-AACAGTAAGCTCTATCGAGC
* *
175753235 TGAACAGTAAGCTCTATCAAAC
1 TGAACAGTAAGCTCTATCGAGC
175753257 TGAACAGTA
1 TGAACAGTA
175753266 GGTTCATAGG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
22 30 0.64
23 17 0.36
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (22 bp):
TGAACAGTAAGCTCTATCGAGC
Found at i:175755151 original size:20 final size:18
Alignment explanation
Indices: 175755128--175755164 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 18
175755118 GCTATTTTTA
175755128 TTTTATTTTTATATTTTTGT
1 TTTTA-TTTTA-ATTTTTGT
175755148 TTTTATTTTAATTTTTG
1 TTTTATTTTAATTTTTG
175755165 CATTCTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 5 0.29
20 5 0.29
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.78
Consensus pattern (18 bp):
TTTTATTTTAATTTTTGT
Found at i:175756591 original size:66 final size:68
Alignment explanation
Indices: 175756515--175756701 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
175756505 TAGTACCACT
*
175756515 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
175756577 CACG
65 CACG
175756581 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
175756646 ATCACG
63 ATCACG
175756652 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
175756702 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:175756626 original size:71 final size:71
Alignment explanation
Indices: 175756538--175756701 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
175756528 CGATTTGTCT
175756538 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
175756603 CTTTCA
66 CTTTCA
175756609 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
175756674 CTTTCA
66 CTTTCA
175756680 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
175756702 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:175756739 original size:71 final size:70
Alignment explanation
Indices: 175756538--175756735 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
175756528 CGATTTGTCT
* * *
175756538 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
175756603 CTTTCA
65 CTTTCA
* * *
175756609 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
175756674 CTTTCA
65 CTTTCA
* *
175756680 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
175756736 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:175765080 original size:205 final size:202
Alignment explanation
Indices: 175764544--175765091 Score: 958
Period size: 205 Copynumber: 2.7 Consensus size: 202
175764534 AAATCTGCTT
* * *
175764544 CTTCAATTTGTTCTCTGACAATATAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
* *
175764609 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAAT--CAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
*
175764672 GGATCTGCTTCAGTGAAATATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTAAGTGGAGA
131 GGATCTGCTTCAGTGAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTAAGTGGAGA
175764737 TGCCAGA
196 TGCCAGA
175764744 CTTCGATTTGTTCTCTGA-AATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
*
175764808 GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTTCCTTGTAAGCACAAGGATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGC-TCCTTGTAAGCACAAGGATGCCAAATCATCT
*
175764873 TGGATCTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCGAAGTG
130 TGGATCTGCTTCAGT-GAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGT--AAGTG
175764938 GAGATGCCAGA
192 GAGATGCCAGA
175764949 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
*
175765014 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
175765079 GGATCTGCTTCAG
131 GGATCTGCTTCAG
175765092 CCAGATCTGC
Statistics
Matches: 331, Mismatches: 10, Indels: 9
0.95 0.03 0.03
Matches are distributed among these distances:
199 75 0.23
200 35 0.11
202 25 0.08
203 40 0.12
205 78 0.24
206 78 0.24
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (202 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
GGATCTGCTTCAGTGAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTAAGTGGAGA
TGCCAGA
Found at i:175776893 original size:17 final size:17
Alignment explanation
Indices: 175776871--175776934 Score: 55
Period size: 16 Copynumber: 3.9 Consensus size: 17
175776861 ATAACAGATT
175776871 TAAAATATAATATATAA
1 TAAAATATAATATATAA
*
175776888 TAAAATAT-ATTTATAA
1 TAAAATATAATATATAA
* *
175776904 GAATA-ATAATCATAT-A
1 TAAAATATAAT-ATATAA
*
175776920 -AAAATATAAAATATA
1 TAAAATATAATATATA
175776935 TTGGTATATA
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
15 9 0.24
16 17 0.46
17 11 0.30
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (17 bp):
TAAAATATAATATATAA
Found at i:175777274 original size:40 final size:41
Alignment explanation
Indices: 175777174--175777275 Score: 111
Period size: 40 Copynumber: 2.5 Consensus size: 41
175777164 CTTTATTGAT
* *
175777174 AATAATATATAGATAAAAAATATATAAAGGTATAAAATATAA
1 AATAATATATA-ATAAATAATATAGAAAGGTATAAAATATAA
** * *
175777216 AATAAT-TATAATTTATAATAT-GAAAGTGTAT-ATATGTAA
1 AATAATATATAATAAATAATATAGAAAG-GTATAAAATATAA
175777255 AATAATATATAATAAATAATA
1 AATAATATATAATAAATAATA
175777276 ATAATAATAT
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
39 16 0.32
40 24 0.48
41 4 0.08
42 6 0.12
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (41 bp):
AATAATATATAATAAATAATATAGAAAGGTATAAAATATAA
Found at i:175779280 original size:8 final size:8
Alignment explanation
Indices: 175779252--175779333 Score: 56
Period size: 9 Copynumber: 9.2 Consensus size: 8
175779242 AAAACATTTC
175779252 AAATATTAA
1 AAATA-TAA
175779261 AAATAGTAAA
1 AAATA-T-AA
175779271 AAATATAA
1 AAATATAA
*
175779279 AATTTTATAA
1 AA--ATATAA
* *
175779289 CAATTGTAA
1 -AAATATAA
175779298 AAATTATAA
1 AAA-TATAA
*
175779307 AAATATAG
1 AAATATAA
175779315 AAATATAA
1 AAATATAA
175779323 AAATTATAA
1 AAA-TATAA
175779332 AA
1 AA
175779334 TTTTATAAAG
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
8 20 0.33
9 26 0.43
10 12 0.20
11 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (8 bp):
AAATATAA
Found at i:175779645 original size:41 final size:46
Alignment explanation
Indices: 175779567--175779652 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 46
175779557 AATTCTTATT
* **
175779567 TTTAATAAATTTTATTTTTTTATATTTTTATTGAAA-TTTAATAAA
1 TTTAATAAATTTTATTTTTATATATTTTTATAAAAATTTTAATAAA
175779612 TTTAAT-AA-TTTATTTTTATAT-TTTTTA-AAAAATTTTAATAA
1 TTTAATAAATTTTATTTTTATATATTTTTATAAAAATTTTAATAA
175779653 GATCAGGGGC
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
41 3 0.08
42 14 0.38
43 12 0.32
44 2 0.05
45 6 0.16
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (46 bp):
TTTAATAAATTTTATTTTTATATATTTTTATAAAAATTTTAATAAA
Found at i:175787742 original size:21 final size:21
Alignment explanation
Indices: 175787703--175787751 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
175787693 TTCTTTATAA
*
175787703 TTTTAATATATATTTTTTATT
1 TTTTAATATATATATTTTATT
*
175787724 TTTTAGAT-TATATATTTTAAAT
1 TTTTA-ATATATATATTTT-ATT
175787746 TTTTAA
1 TTTTAA
175787752 ATGATGATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 15 0.62
22 9 0.38
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (21 bp):
TTTTAATATATATATTTTATT
Found at i:175793980 original size:22 final size:23
Alignment explanation
Indices: 175793939--175793982 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
175793929 GAGGAACTGG
175793939 GGGAAGAGAAGAAAAAAGAAAAA
1 GGGAAGAGAAGAAAAAAGAAAAA
175793962 GGGAAG-GAA-AAAAATAGAAAA
1 GGGAAGAGAAGAAAAA-AGAAAA
175793983 TGAAAGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 5 0.25
22 9 0.45
23 6 0.30
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.02
Consensus pattern (23 bp):
GGGAAGAGAAGAAAAAAGAAAAA
Found at i:175795156 original size:19 final size:20
Alignment explanation
Indices: 175795125--175795162 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
175795115 TAACATTAGC
*
175795125 TAATTGTTAATTAGTTAATT
1 TAATTGTTAATTAATTAATT
175795145 TAATTG-TAATTAATTAAT
1 TAATTGTTAATTAATTAAT
175795163 AAATAATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (20 bp):
TAATTGTTAATTAATTAATT
Found at i:175796260 original size:27 final size:27
Alignment explanation
Indices: 175796229--175796361 Score: 180
Period size: 27 Copynumber: 4.9 Consensus size: 27
175796219 CTGCCAGAAT
* *
175796229 AGATA-ATGTGACAGAGTCACCAGATAC
1 AGATATATGTGGCAGAGCCACCAGAT-C
*
175796256 AGATA-ATCGTGGCAGAGCCACCAGAAC
1 AGATATAT-GTGGCAGAGCCACCAGATC
175796283 AGATATATGTGGCAGAGCCACCAGATC
1 AGATATATGTGGCAGAGCCACCAGATC
*
175796310 AGATATTTGTGGCAGAGCCACCAGATC
1 AGATATATGTGGCAGAGCCACCAGATC
* *
175796337 AGATATTTGTGGCATAGCCACCAGA
1 AGATATATGTGGCAGAGCCACCAGA
175796362 ACGCTTCCTC
Statistics
Matches: 98, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
27 81 0.83
28 17 0.17
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
AGATATATGTGGCAGAGCCACCAGATC
Found at i:175798014 original size:26 final size:26
Alignment explanation
Indices: 175797978--175798116 Score: 215
Period size: 26 Copynumber: 5.2 Consensus size: 26
175797968 CATGAAATTC
*
175797978 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
175798004 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
175798030 TTATCATGGAACATTTACCTAACTAACCA
1 TTATCATGGAACATTTACCTAAC---CCA
*
175798059 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
*
175798085 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
175798111 TTATCA
1 TTATCA
175798117 ATTTGTATCA
Statistics
Matches: 108, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
26 82 0.76
29 26 0.24
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:175798078 original size:55 final size:52
Alignment explanation
Indices: 175797978--175798116 Score: 215
Period size: 55 Copynumber: 2.6 Consensus size: 52
175797968 CATGAAATTC
*
175797978 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
* *
175798030 TTATCATGGAACATTTACCTAACTAACCATTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAAC---CCATTATCATGAAACATTTACCTAACCCA
*
175798085 TTATCATGGAACATTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCCATTATCA
175798117 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
52 30 0.38
55 50 0.62
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
Found at i:175801277 original size:43 final size:42
Alignment explanation
Indices: 175801221--175801301 Score: 162
Period size: 42 Copynumber: 1.9 Consensus size: 42
175801211 ATGCCACATC
175801221 AAAAACGTAAAAAAAATTTCCATTCTAAGTCTAGAAAATTGT
1 AAAAACGTAAAAAAAATTTCCATTCTAAGTCTAGAAAATTGT
175801263 AAAAACGTAAAAAAAATTTCCATTCTAAGTCTAGAAAAT
1 AAAAACGTAAAAAAAATTTCCATTCTAAGTCTAGAAAAT
175801302 GTACTTGATG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.52, C:0.12, G:0.09, T:0.27
Consensus pattern (42 bp):
AAAAACGTAAAAAAAATTTCCATTCTAAGTCTAGAAAATTGT
Found at i:175802150 original size:27 final size:27
Alignment explanation
Indices: 175802113--175802248 Score: 165
Period size: 27 Copynumber: 5.1 Consensus size: 27
175802103 AGCATGGCTG
* *
175802113 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
175802139 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
175802167 CCAGA-ACAGAT-ATGTGGCAGAGCCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
175802192 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
* *
175802219 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
175802246 CCA
1 CCA
175802249 AACGCTTCCT
Statistics
Matches: 101, Mismatches: 4, Indels: 9
0.89 0.04 0.08
Matches are distributed among these distances:
25 22 0.22
26 7 0.07
27 57 0.56
28 15 0.15
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:175802218 original size:52 final size:53
Alignment explanation
Indices: 175802113--175802248 Score: 184
Period size: 52 Copynumber: 2.5 Consensus size: 53
175802103 AGCATGGCTG
* *
175802113 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAT-ATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* *
175802167 CCAGAACAGATATGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* *
175802219 CCAGATCAGATATTTGTGGCATAGCCACCA
1 CCAGAACAGATA--TGTGGCAGAGCCACCA
175802249 AACGCTTCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
52 30 0.41
53 18 0.24
54 26 0.35
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.18
Consensus pattern (53 bp):
CCAGAACAGATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:175802379 original size:26 final size:27
Alignment explanation
Indices: 175802350--175802425 Score: 100
Period size: 26 Copynumber: 2.8 Consensus size: 27
175802340 AAAAATTAAC
*
175802350 CCTAGGGGTATAACAGTAATTTTGC-A
1 CCTAGGGGTATAACAGTAATTTTCCAA
175802376 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATAACAGTAATTTTCCA-A
* * *
175802404 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATAACAGTAATTT
175802426 AGCTACTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 24 0.55
28 20 0.45
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (27 bp):
CCTAGGGGTATAACAGTAATTTTCCAA
Found at i:175803955 original size:25 final size:26
Alignment explanation
Indices: 175803861--175803969 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
175803851 CATGAAATTC
175803861 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
175803887 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
175803913 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
175803939 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
175803964 TTATCA
1 TTATCA
175803970 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 23 0.28
26 58 0.72
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:175805315 original size:20 final size:20
Alignment explanation
Indices: 175805290--175805384 Score: 86
Period size: 20 Copynumber: 4.8 Consensus size: 20
175805280 NNNNNNNNNA
*
175805290 TTTGCACTTTGGTGCCTCTG
1 TTTGCACTTCGGTGCCTCTG
175805310 TTTGCACTTCGGTGCCTCTG
1 TTTGCACTTCGGTGCCTCTG
***
175805330 TACACACTTCGGTGTCC-CTG
1 TTTGCACTTCGGTG-CCTCTG
* *
175805350 TTTGCACTACGGTTCC-CTTG
1 TTTGCACTTCGGTGCCTC-TG
**
175805370 TCAGCACTTCGGTGC
1 TTTGCACTTCGGTGC
175805385 TCCTATTATG
Statistics
Matches: 60, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
19 3 0.05
20 55 0.92
21 2 0.03
ACGTcount: A:0.09, C:0.31, G:0.23, T:0.37
Consensus pattern (20 bp):
TTTGCACTTCGGTGCCTCTG
Found at i:175805351 original size:40 final size:40
Alignment explanation
Indices: 175805293--175805384 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 40
175805283 NNNNNNATTT
* *
175805293 GCACTTTGGTGCCTCTGTTTGCACTTCGGTG-CCTCTGTACA
1 GCACTTCGGTGCCTCTGTTTGCACTACGGTGCCCT-TGT-CA
*
175805334 -CACTTCGGTGTCC-CTGTTTGCACTACGGTTCCCTTGTCA
1 GCACTTCGGTG-CCTCTGTTTGCACTACGGTGCCCTTGTCA
175805373 GCACTTCGGTGC
1 GCACTTCGGTGC
175805385 TCCTATTATG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
39 3 0.07
40 37 0.82
41 5 0.11
ACGTcount: A:0.10, C:0.32, G:0.24, T:0.35
Consensus pattern (40 bp):
GCACTTCGGTGCCTCTGTTTGCACTACGGTGCCCTTGTCA
Found at i:175807152 original size:17 final size:18
Alignment explanation
Indices: 175807110--175807158 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
175807100 AGTTGAAAAG
175807110 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
175807129 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
175807146 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
175807159 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:175808041 original size:40 final size:40
Alignment explanation
Indices: 175807975--175808141 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
175807965 AAATTGAATG
* * *
175807975 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
175808014 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
175808054 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
175808094 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
175808134 ATATCCGG
1 ATATCCGG
175808142 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:175815139 original size:17 final size:18
Alignment explanation
Indices: 175815097--175815145 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
175815087 AGTTGAAAAG
175815097 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
175815116 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
175815133 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
175815146 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:175816034 original size:40 final size:40
Alignment explanation
Indices: 175815968--175816134 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
175815958 AAATTGAATG
* * *
175815968 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
175816007 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
175816047 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
175816087 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
175816127 ATATCCGG
1 ATATCCGG
175816135 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:175820182 original size:30 final size:30
Alignment explanation
Indices: 175820127--175820286 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
175820117 ATAGTGAATC
175820127 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
175820156 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
175820186 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
175820215 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
175820243 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
175820273 CGCACACTTAGTGC
1 CGCACACTTAGTGC
175820287 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 47 0.39
30 47 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:175820219 original size:59 final size:57
Alignment explanation
Indices: 175820127--175820286 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
175820117 ATAGTGAATC
*
175820127 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
*
175820186 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTGTATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
175820243 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
175820287 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 49 0.53
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:175828226 original size:30 final size:30
Alignment explanation
Indices: 175828171--175828330 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
175828161 ATAGTGAATC
175828171 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
175828200 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
175828230 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
175828259 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
175828287 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
175828317 CGCACACTTAGTGC
1 CGCACACTTAGTGC
175828331 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 47 0.39
30 47 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:175828263 original size:59 final size:57
Alignment explanation
Indices: 175828171--175828330 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
175828161 ATAGTGAATC
*
175828171 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
*
175828230 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTGTATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
175828287 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
175828331 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 49 0.53
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:175833305 original size:29 final size:29
Alignment explanation
Indices: 175833270--175833343 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
175833260 GTTGTGAGAT
* *
175833270 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
175833299 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
175833328 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
175833344 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:175846768 original size:30 final size:31
Alignment explanation
Indices: 175846734--175846796 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
175846724 CCTTTTCATG
175846734 TTTCATATTCCATA-CACTGGGCCGAAGCCT
1 TTTCATATTCCATATCACTGGGCCGAAGCCT
* *
175846764 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATATCACTGGGCCGAAGCCT
175846795 TT
1 TT
175846797 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 13 0.43
31 17 0.57
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTCCATATCACTGGGCCGAAGCCT
Found at i:175847039 original size:24 final size:24
Alignment explanation
Indices: 175846988--175847130 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
175846978 GCTTTATCAT
*
175846988 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
175847013 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
175847037 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
175847060 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
175847084 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
175847108 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
175847131 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:175847067 original size:47 final size:48
Alignment explanation
Indices: 175846988--175847129 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
175846978 GCTTTATCAT
* *
175846988 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
175847037 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
175847084 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
175847130 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:175847088 original size:71 final size:72
Alignment explanation
Indices: 175846987--175847130 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
175846977 TGCTTTATCA
*
175846987 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
175847052 GCCCTTT
66 GCCCTTT
* * **
175847059 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
175847122 AGCCCTTT
65 AGCCCTTT
175847130 T
1 T
175847131 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:175847204 original size:19 final size:19
Alignment explanation
Indices: 175847176--175847217 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
175847166 GCATTATGAT
175847176 TACA-TCATGTGCATATCA
1 TACATTCATGTGCATATCA
175847194 TACATTCATGTGCATATCA
1 TACATTCATGTGCATATCA
175847213 TACAT
1 TACAT
175847218 ACCATATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (19 bp):
TACATTCATGTGCATATCA
Found at i:175854831 original size:31 final size:31
Alignment explanation
Indices: 175854793--175854856 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
175854783 CCTTTTCATA
175854793 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
175854824 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
175854855 TT
1 TT
175854857 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:175855112 original size:23 final size:24
Alignment explanation
Indices: 175855048--175855189 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
175855038 GCTTTATCAT
*
175855048 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
175855073 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
175855097 ATAACT-GGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
175855119 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
175855143 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
175855167 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
175855190 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
22 6 0.06
23 30 0.28
24 61 0.56
25 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:175855148 original size:70 final size:72
Alignment explanation
Indices: 175855047--175855189 Score: 211
Period size: 70 Copynumber: 2.0 Consensus size: 72
175855037 TGCTTTATCA
*
175855047 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACT-GGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
175855111 GCCCTTT
66 GCCCTTT
* * **
175855118 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
175855181 AGCCCTTT
65 AGCCCTTT
175855189 T
1 T
175855190 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
70 36 0.55
71 29 0.45
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:175855265 original size:20 final size:20
Alignment explanation
Indices: 175855240--175855299 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
175855230 TATGATTACC
175855240 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
175855260 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
175855280 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
175855300 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:175855270 original size:11 final size:11
Alignment explanation
Indices: 175855240--175855294 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
175855230 TATGATTACC
175855240 TCATGTGCATA
1 TCATGTGCATA
*
175855251 TCA--TACATA
1 TCATGTGCATA
175855260 TCATGTGCATA
1 TCATGTGCATA
* *
175855271 TCA--TACATT
1 TCATGTGCATA
175855280 TCATGTGCATA
1 TCATGTGCATA
175855291 TCAT
1 TCAT
175855295 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:175855374 original size:25 final size:25
Alignment explanation
Indices: 175855342--175855389 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
175855332 ATACATAAAC
* * *
175855342 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
175855367 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
175855390 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:175861027 original size:68 final size:70
Alignment explanation
Indices: 175860955--175861152 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
175860945 ACACCCTGTA
* * * *
175860955 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
175861017 ATAAAT
65 ATAAAT
*
175861023 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
175861088 ATAAAT
65 ATAAAT
*
175861094 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
175861153 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:175861066 original size:41 final size:41
Alignment explanation
Indices: 175861021--175861138 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
175861011 TGAAAGATAA
175861021 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
175861062 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
175861092 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
175861133 ATGTAG
1 ATGTAG
175861139 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:175861078 original size:71 final size:71
Alignment explanation
Indices: 175860989--175861152 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
175860979 GAGATGTATC
175860989 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
175861054 AGGACA
66 AGGACA
175861060 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
175861125 AGGACA
66 AGGACA
175861131 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
175861153 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:175864853 original size:28 final size:28
Alignment explanation
Indices: 175864821--175864919 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
175864811 TGCATAAGCC
*
175864821 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
175864849 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
175864877 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
175864906 CGCACACTTAGTGC
1 CGCACACTTAGTGC
175864920 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:175872514 original size:28 final size:28
Alignment explanation
Indices: 175872482--175872580 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
175872472 TGCATAAGCC
*
175872482 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
175872510 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
175872538 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
175872567 CGCACACTTAGTGC
1 CGCACACTTAGTGC
175872581 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:175876668 original size:40 final size:40
Alignment explanation
Indices: 175876576--175876725 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
175876566 AATTGAATGA
* * * *
175876576 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAAT-T
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACATAC
* * *
175876615 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
175876656 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
175876695 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
175876726 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
38 3 0.03
39 31 0.34
40 54 0.59
41 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:175876739 original size:40 final size:40
Alignment explanation
Indices: 175876615--175876741 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 40
175876605 GCTGGAAATT
* * * * *
175876615 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
* * ** *
175876655 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
175876695 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
175876735 TATCCGG
1 TATCCGG
175876742 TTATGTTCCG
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
Found at i:175891058 original size:40 final size:39
Alignment explanation
Indices: 175891013--175891142 Score: 118
Period size: 40 Copynumber: 3.3 Consensus size: 39
175891003 CGGAACATAA
175891013 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
175891053 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * * *
175891093 CCGGATGTAGCCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
*
175891133 CCGGTTATAA
1 CCGGATATAA
175891143 TTTCCAGCAT
Statistics
Matches: 70, Mismatches: 16, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:175897228 original size:40 final size:40
Alignment explanation
Indices: 175897127--175897298 Score: 179
Period size: 40 Copynumber: 4.3 Consensus size: 40
175897117 TACTCGAATG
* * * *
175897127 ATATCCAGGCTAGGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
* * *
175897168 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACT
* *
175897208 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * **
175897248 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
175897287 ATATCC-GGCTAA
1 ATATCCGGGCTAA
175897299 ACCCTGAAGA
Statistics
Matches: 110, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 6 0.05
39 16 0.15
40 61 0.55
41 26 0.24
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:175908642 original size:20 final size:20
Alignment explanation
Indices: 175908602--175908643 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
175908592 ATACTAGAAG
*
175908602 TAACTACTTCACCTAATAGC
1 TAACTACTTCACCTAACAGC
* *
175908622 TAACTACTTTACTTAACAGC
1 TAACTACTTCACCTAACAGC
175908642 TA
1 TA
175908644 GCTAACTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.33
Consensus pattern (20 bp):
TAACTACTTCACCTAACAGC
Found at i:175910097 original size:2 final size:2
Alignment explanation
Indices: 175910090--175910129 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
175910080 AAGCATGCCC
*
175910090 AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
175910130 TTACGATAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:175923260 original size:71 final size:71
Alignment explanation
Indices: 175923172--175923335 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
175923162 GAGATGTATC
175923172 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
175923237 AGGACA
66 AGGACA
*
175923243 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
175923308 CGGACA
66 AGGACA
175923314 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
175923336 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:175934681 original size:26 final size:26
Alignment explanation
Indices: 175934645--175934698 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
175934635 AACAAGGAGA
175934645 ATGTTAAAGCATGACCACACATTACT
1 ATGTTAAAGCATGACCACACATTACT
*
175934671 ATGTTAGAGCATGACCACACATTACT
1 ATGTTAAAGCATGACCACACATTACT
175934697 AT
1 AT
175934699 ACTAGATGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (26 bp):
ATGTTAAAGCATGACCACACATTACT
Found at i:175934704 original size:26 final size:26
Alignment explanation
Indices: 175934652--175934704 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
175934642 AGAATGTTAA
**
175934652 AGCATGACCACACATTACTATGTTAG
1 AGCATGACCACACATTACTATACTAG
175934678 AGCATGACCACACATTACTATACTAG
1 AGCATGACCACACATTACTATACTAG
175934704 A
1 A
175934705 TGATAACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.25
Consensus pattern (26 bp):
AGCATGACCACACATTACTATACTAG
Found at i:175936268 original size:25 final size:25
Alignment explanation
Indices: 175936234--175936285 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
175936224 TTCGGAAAAA
175936234 AAGAAAGAAATTAAATGATTTTATG
1 AAGAAAGAAATTAAATGATTTTATG
175936259 AAGAAAGAAATTAAATGATTTTATG
1 AAGAAAGAAATTAAATGATTTTATG
175936284 AA
1 AA
175936286 CCTCCATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.54, C:0.00, G:0.15, T:0.31
Consensus pattern (25 bp):
AAGAAAGAAATTAAATGATTTTATG
Found at i:175940813 original size:46 final size:44
Alignment explanation
Indices: 175940762--175940874 Score: 138
Period size: 46 Copynumber: 2.5 Consensus size: 44
175940752 CAAGAGCTAG
*
175940762 TGTAAGAAATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT--GCCAA
* * * *
175940808 TGTAAGACATGTTTGGGACATGCATCGGTTACGAGATGTGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCCAA
175940852 TGTAAGACCATGTCTGGGACATG
1 TGTAAGA-CATGTCTGGGACATG
175940875 GCATTGGCAC
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
44 10 0.17
45 15 0.25
46 34 0.58
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (44 bp):
TGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCCAA
Found at i:175940827 original size:93 final size:92
Alignment explanation
Indices: 175940664--175940836 Score: 226
Period size: 93 Copynumber: 1.9 Consensus size: 92
175940654 TTATTTATGT
* * *
175940664 GCTAGTGTAAGACATGTCTGGGACATCATCAGCCACATTAGTAGAGCCAGTGTAAGACCATGTCT
1 GCTAGTGTAAGAAATGTCTGGGACATCATCAGCCACAATAGTAGAGCCAATGTAAGACCATGTCT
175940729 AGGACATGGCATCGGTATTGAGACAAGA
66 AGGACAT-GCATCGGTATTGAGACAAGA
* *
175940757 GCTAGTGTAAGAAATGTCTGGGACATGCATCGGCCTCGAGAT-GTA-AGCCAATGTAAGA-CATG
1 GCTAGTGTAAGAAATGTCTGGGACAT-CATCAGCCAC-A-ATAGTAGAGCCAATGTAAGACCATG
* *
175940819 TTTGGGACATGCATCGGT
63 TCTAGGACATGCATCGGT
175940837 TACGAGATGT
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
92 8 0.11
93 37 0.53
94 20 0.29
95 4 0.06
96 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (92 bp):
GCTAGTGTAAGAAATGTCTGGGACATCATCAGCCACAATAGTAGAGCCAATGTAAGACCATGTCT
AGGACATGCATCGGTATTGAGACAAGA
Found at i:175940909 original size:48 final size:47
Alignment explanation
Indices: 175940667--175941033 Score: 177
Period size: 48 Copynumber: 7.8 Consensus size: 47
175940657 TTTATGTGCT
* *
175940667 AGTGTAAGA-CATGTCTGGGACAT--CATCAGCCAC-ATTAGTA-GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCAT-TGGCACTA-TAG-AGGAGCC
* * * * * * * *
175940712 AGTGTAAGACCATGTCTAGGACATGGCATCGGTATTGAGACAAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACT-ATAGAGGAGCC
* * ** *
175940760 AGTGTAAGA-AATGTCTGGGACAT-GCATCGGC-CTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACTATAGA-G-GAGCC
* * * * * * * *
175940806 AATGTAAGA-CATGTTTGGGACAT-GCATCGG--TTACGAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACTA-TAGAGGAGCC
* **
175940850 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACGTATAGAGGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCAC-TATAGAGGAGCC
* * * * * *
175940898 AGTGTAAGACCATTTCTGGGACATGGCATCGACACAAATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCAC-TATA-GAG-GAGCC
* * * *
175940948 AGTGTAAGACCATGTCTGGCACATGGCA-TCG-ACTTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCAC-T-ATAGAGGAGCC
* *
175940995 AGTGTAAGACCATGTATGGGACATGACATTGGCACTATA
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACTATA
175941034 CCCTATGTTT
Statistics
Matches: 246, Mismatches: 57, Indels: 36
0.73 0.17 0.11
Matches are distributed among these distances:
44 13 0.05
45 24 0.10
46 60 0.24
47 46 0.19
48 65 0.26
49 9 0.04
50 29 0.12
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTGGCACTATAGAGGAGCC
Found at i:175945900 original size:17 final size:18
Alignment explanation
Indices: 175945878--175945920 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 18
175945868 TGAGTGGGAG
175945878 GGGTAAGGGT-AGAGG-AA
1 GGGTAAGGGTAAG-GGTAA
175945895 GGGTAAGGGTAAGGGTAA
1 GGGTAAGGGTAAGGGTAA
175945913 GGGTAAGG
1 GGGTAAGG
175945921 ATAGGTGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.33, C:0.00, G:0.53, T:0.14
Consensus pattern (18 bp):
GGGTAAGGGTAAGGGTAA
Found at i:175945902 original size:6 final size:6
Alignment explanation
Indices: 175945878--175945920 Score: 63
Period size: 6 Copynumber: 7.3 Consensus size: 6
175945868 TGAGTGGGAG
175945878 GGGTAA GGGT-A GAGG-AA GGGTAA GGGTAA GGGTAA GGGTAA GG
1 GGGTAA GGGTAA G-GGTAA GGGTAA GGGTAA GGGTAA GGGTAA GG
175945921 ATAGGTGACT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 4 0.12
6 30 0.88
ACGTcount: A:0.33, C:0.00, G:0.53, T:0.14
Consensus pattern (6 bp):
GGGTAA
Found at i:175951804 original size:37 final size:37
Alignment explanation
Indices: 175951746--175951844 Score: 171
Period size: 37 Copynumber: 2.7 Consensus size: 37
175951736 CGAATAGTCC
* *
175951746 CCACACGTAGTTATCGAGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
175951783 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
175951820 CCACACGTAGTCATCGGGTCTTACC
1 CCACACGTAGTCATCGGGTCTTACC
175951845 GGAATATATT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:175952074 original size:48 final size:48
Alignment explanation
Indices: 175952020--175952328 Score: 564
Period size: 48 Copynumber: 6.4 Consensus size: 48
175952010 GCCGAATCAC
* *
175952020 TAGCCATTCGGCTTTGCCACATATACATATCTCATACATATTTCTCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
175952068 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
175952116 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
175952164 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
* *
175952212 TAGCCATTCGGCTTTACCACTTATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
* *
175952260 TAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
175952308 TAGCCATTCGGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
175952329 CACATATATA
Statistics
Matches: 254, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 254 1.00
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.36
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
Found at i:175953696 original size:2 final size:2
Alignment explanation
Indices: 175953689--175953714 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
175953679 TTCATTATTA
175953689 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
175953715 CTAAACACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:175954693 original size:94 final size:94
Alignment explanation
Indices: 175954532--175954716 Score: 352
Period size: 94 Copynumber: 2.0 Consensus size: 94
175954522 ATCCAAATGA
175954532 CAAAATTAAAGCATGAAATTTTCACACATACTTATTCATAAATAATAAGCATAAAATATAACAAT
1 CAAAATTAAAGCATGAAATTTTCACACATACTTATTCATAAATAATAAGCATAAAATATAACAAT
* *
175954597 TAATTATTTTTGTGGCTTGGTTTTGTTGT
66 TAATTATTTTTGTGGCTCGATTTTGTTGT
175954626 CAAAATTAAAGCATGAAATTTTCACACATACTTATTCATAAATAATAAGCATAAAATATAACAAT
1 CAAAATTAAAGCATGAAATTTTCACACATACTTATTCATAAATAATAAGCATAAAATATAACAAT
175954691 TAATTATTTTTGTGGCTCGATTTTGT
66 TAATTATTTTTGTGGCTCGATTTTGT
175954717 GGTCCCGAAA
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 89 1.00
ACGTcount: A:0.41, C:0.11, G:0.10, T:0.38
Consensus pattern (94 bp):
CAAAATTAAAGCATGAAATTTTCACACATACTTATTCATAAATAATAAGCATAAAATATAACAAT
TAATTATTTTTGTGGCTCGATTTTGTTGT
Found at i:175956047 original size:29 final size:29
Alignment explanation
Indices: 175955988--175956120 Score: 146
Period size: 29 Copynumber: 4.7 Consensus size: 29
175955978 CTGACTGATT
* * *
175955988 TCGCACACATAGCG-CTCGATTATAGAAC
1 TCGCACACATAGTGCCTCAATTAAAGAAC
175956016 TCGCACACATAGTGCCTCAATTAAAGAAC
1 TCGCACACATAGTGCCTCAATTAAAGAAC
* *
175956045 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTGCCTCAATTA-AAGAAC
* * *
175956074 TCGCACACATAGCG-CTCGATTGAAGAAC
1 TCGCACACATAGTGCCTCAATTAAAGAAC
* *
175956102 TTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCCTCA
175956121 TAATTCCAGC
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
27 1 0.01
28 32 0.37
29 53 0.61
30 1 0.01
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (29 bp):
TCGCACACATAGTGCCTCAATTAAAGAAC
Found at i:175956055 original size:57 final size:57
Alignment explanation
Indices: 175955988--175956120 Score: 144
Period size: 57 Copynumber: 2.3 Consensus size: 57
175955978 CTGACTGATT
* * *
175955988 TCGCACACATAGCG-CTCGATTA-TAGAACTCGCACACATAGTGCCTCAATTAAAGAAC
1 TCGCACACATAGCGCCTCAATTACCA-AACTCGCACACATAGCG-CTCAATTAAAGAAC
* * * *
175956045 TCGCACACATAGTGCCTCAATTACCAATCTCGCACACATAGCGCTCGATTGAAGAAC
1 TCGCACACATAGCGCCTCAATTACCAAACTCGCACACATAGCGCTCAATTAAAGAAC
* * *
175956102 TTGCACACACAGTGCCTCA
1 TCGCACACATAGCGCCTCA
175956121 TAATTCCAGC
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
57 42 0.65
58 22 0.34
59 1 0.02
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (57 bp):
TCGCACACATAGCGCCTCAATTACCAAACTCGCACACATAGCGCTCAATTAAAGAAC
Found at i:175956193 original size:40 final size:40
Alignment explanation
Indices: 175956126--175956402 Score: 396
Period size: 40 Copynumber: 7.0 Consensus size: 40
175956116 CCTCATAATT
*
175956126 CCAGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCA
*
175956165 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
*
175956205 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
* * * *
175956245 CTAGCACGAATGCTCTTCGGGACTTAGCCCAGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
* * *
175956285 CCAGCACGAATGCTCTTCGGAACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
* * *
175956325 CCAGCACGAATGCTCTTCGGGACTTATCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
* *
175956365 CCAGCACGAATGCTCTTCGGGACTTAGCCTGGCTATAT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
175956403 AACTCTCAAT
Statistics
Matches: 221, Mismatches: 15, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
39 14 0.06
40 207 0.94
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
Found at i:175958824 original size:40 final size:39
Alignment explanation
Indices: 175958697--175958826 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
175958687 ATGCTGGAAA
* *
175958697 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
175958737 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
175958777 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
175958817 TTATATCCGG
1 TTATATCCGG
175958827 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:175966596 original size:40 final size:39
Alignment explanation
Indices: 175966469--175966598 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
175966459 ATGCTGGAAA
* *
175966469 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
175966509 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
175966549 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
175966589 TTATATCCGG
1 TTATATCCGG
175966599 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:175969529 original size:40 final size:40
Alignment explanation
Indices: 175969484--175969650 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
175969474 CGGAATATAA
175969484 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
175969524 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
175969564 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
175969604 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
175969643 CCGGATAT
1 CCGGATAT
175969651 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:175969634 original size:80 final size:79
Alignment explanation
Indices: 175969484--175969650 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
175969474 CGGAATATAA
* *
175969484 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
175969549 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
175969564 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
175969626 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
175969643 CCGGATAT
1 CCGGATAT
175969651 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:175970501 original size:17 final size:19
Alignment explanation
Indices: 175970478--175970523 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
175970468 AAGAAGCATG
175970478 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
175970496 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
175970514 AATCATGCTC
1 AATCATGCTC
175970524 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:175975994 original size:50 final size:50
Alignment explanation
Indices: 175975923--175976120 Score: 207
Period size: 50 Copynumber: 3.9 Consensus size: 50
175975913 TAAGACGGTT
* * *
175975923 TTAGGACACGTGTGTACTACTAAGTGCAGGCTACTACGTGTACCAAATTG
1 TTAGGTCACATGTGTACTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* ** * *
175975973 TTAGGTCACATGTGTACTACTAAGTGCAGGCTACTATGCATACCCGATAG
1 TTAGGTCACATGTGTACTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * *
175976023 CTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTG
1 -TTAGGTCACATGTGTACTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * * *
175976074 CTAGGTCGCAAGTGTAGTACTAAGTGTAGGCTACTATGGGTACCAGA
1 TTAGGTCACATGTGTACTACTAAGTGCAGGCTACTACGTGTACCAGA
175976121 GAGCTTCAGT
Statistics
Matches: 119, Mismatches: 28, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
50 79 0.66
51 40 0.34
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (50 bp):
TTAGGTCACATGTGTACTACTAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:175976058 original size:101 final size:101
Alignment explanation
Indices: 175975929--175976111 Score: 294
Period size: 101 Copynumber: 1.8 Consensus size: 101
175975919 GGTTTTAGGA
* *
175975929 CACGTGTGTACTACTAAGTGCAGGCTACTACGTGTACCAAATTGTTAGGTCACATGTGTACTACT
1 CACGTGTGTACTACTAAGTGCAGGCTACTACGTGTACCAAATTGCTAGGTCACAAGTGTACTACT
175975994 AAGTGCAGGCTACTATGCATACCCGATAGCTTCGAT
66 AAGTGCAGGCTACTATGCATACCCGATAGCTTCGAT
* * * * *
175976030 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGCTAGGTCGCAAGTGTAGTACT
1 CACGTGTGTACTACTAAGTGCAGGCTACTACGTGTACCAAATTGCTAGGTCACAAGTGTACTACT
*
175976095 AAGTGTAGGCTACTATG
66 AAGTGCAGGCTACTATG
175976112 GGTACCAGAG
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 74 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (101 bp):
CACGTGTGTACTACTAAGTGCAGGCTACTACGTGTACCAAATTGCTAGGTCACAAGTGTACTACT
AAGTGCAGGCTACTATGCATACCCGATAGCTTCGAT
Found at i:175979889 original size:16 final size:16
Alignment explanation
Indices: 175979868--175979939 Score: 63
Period size: 16 Copynumber: 4.5 Consensus size: 16
175979858 TGAATTACTG
175979868 ATTATAGCTCTATTCC
1 ATTATAGCTCTATTCC
* * *
175979884 ATTATAGTTTTATTTC
1 ATTATAGCTCTATTCC
* * *
175979900 ATTAAAGCTCCATTTC
1 ATTATAGCTCTATTCC
* *
175979916 ATTATAACCCTATTCC
1 ATTATAGCTCTATTCC
*
175979932 ATTCTAGC
1 ATTATAGC
175979940 GAACCAAACG
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
16 42 1.00
ACGTcount: A:0.28, C:0.22, G:0.06, T:0.44
Consensus pattern (16 bp):
ATTATAGCTCTATTCC
Found at i:175983265 original size:21 final size:21
Alignment explanation
Indices: 175983227--175983266 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
175983217 CAAGTAAGAA
* *
175983227 ATGAAATTAATTCGTCTCATT
1 ATGAAATTAATCCATCTCATT
*
175983248 ATGAGATTAATCCATCTCA
1 ATGAAATTAATCCATCTCA
175983267 CATCAAAGCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (21 bp):
ATGAAATTAATCCATCTCATT
Found at i:175986937 original size:45 final size:48
Alignment explanation
Indices: 175986868--175986988 Score: 149
Period size: 47 Copynumber: 2.6 Consensus size: 48
175986858 TTTGTGTGCT
*
175986868 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-ATATGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACGAGATATGAAAGCC
* * * ** **
175986914 AGTGTAAGACAT-TCTGGGACATGCTTTGACCTCGAGATATTTAAGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACGAGATATGAAAGCC
175986961 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
175986989 AAAATTGAGA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
45 17 0.27
46 13 0.21
47 19 0.31
48 13 0.21
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACGAGATATGAAAGCC
Found at i:175990298 original size:49 final size:49
Alignment explanation
Indices: 175990226--175990335 Score: 139
Period size: 49 Copynumber: 2.2 Consensus size: 49
175990216 TGTTACGTGT
** *
175990226 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAAAGC
1 CAGTGTAAGACCTCCCTGGGACATGACATCGACACCGATAGATGAAAGC
* ** * * *
175990275 CAGTGTAAGACCTCCCTGGGACATGACATCGGCTTCGCTATATGAGAGC
1 CAGTGTAAGACCTCCCTGGGACATGACATCGACACCGATAGATGAAAGC
175990324 CAGTGTAAGACC
1 CAGTGTAAGACC
175990336 ATGTCTGGTA
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.28, C:0.25, G:0.27, T:0.20
Consensus pattern (49 bp):
CAGTGTAAGACCTCCCTGGGACATGACATCGACACCGATAGATGAAAGC
Found at i:175996886 original size:9 final size:10
Alignment explanation
Indices: 175996863--175996889 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
175996853 GTAGCATCTA
175996863 AAAAAATCAT
1 AAAAAATCAT
175996873 AAAAAATCAT
1 AAAAAATCAT
175996883 AAAAAAT
1 AAAAAAT
175996890 AATTAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.74, C:0.07, G:0.00, T:0.19
Consensus pattern (10 bp):
AAAAAATCAT
Found at i:175998867 original size:68 final size:70
Alignment explanation
Indices: 175998795--175998992 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
175998785 ACACCCTGTA
* * * *
175998795 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
175998857 ATAAAT
65 ATAAAT
*
175998863 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
175998928 ATAAAT
65 ATAAAT
*
175998934 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
175998993 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:175998906 original size:41 final size:41
Alignment explanation
Indices: 175998861--175998978 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
175998851 TGAAAGATAA
175998861 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
175998902 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
175998932 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
175998973 ATGTAG
1 ATGTAG
175998979 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:175998918 original size:71 final size:71
Alignment explanation
Indices: 175998829--175998992 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
175998819 GAGATGTATC
175998829 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
175998894 AGGACA
66 AGGACA
175998900 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
175998965 AGGACA
66 AGGACA
175998971 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
175998993 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:176006551 original size:71 final size:72
Alignment explanation
Indices: 176006397--176006562 Score: 316
Period size: 71 Copynumber: 2.3 Consensus size: 72
176006387 GAGATGTATC
176006397 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGAGGTCGCATGCGTGATTCCAAGT
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTA-AGGTCGCATGCGTGATTCCAAGT
176006462 GAAGGACA
65 GAAGGACA
176006470 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-AGGTCGCATGCGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAAGGTCGCATGCGTGATTCCAAGTG
176006534 AAGGACA
66 AAGGACA
176006541 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
176006563 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
71 53 0.57
73 40 0.43
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (72 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAAGGTCGCATGCGTGATTCCAAGTG
AAGGACA
Found at i:176010555 original size:29 final size:29
Alignment explanation
Indices: 176010523--176010595 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
176010513 CTTCGAGCTC
*
176010523 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
176010552 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
176010581 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
176010596 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:176018612 original size:29 final size:29
Alignment explanation
Indices: 176018580--176018652 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
176018570 CTTCGAGCTC
*
176018580 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
176018609 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
176018638 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
176018653 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:176019974 original size:24 final size:22
Alignment explanation
Indices: 176019940--176019986 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 22
176019930 ATCCACACTC
176019940 TTTTTTTTTTCATCATTTTCCT
1 TTTTTTTTTTCATCATTTTCCT
* *
176019962 TTTTTTTCATTTCTTTATTTTCCT
1 TTTTTTT--TTTCATCATTTTCCT
176019986 T
1 T
176019987 CCATAATGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 7 0.33
24 14 0.67
ACGTcount: A:0.09, C:0.17, G:0.00, T:0.74
Consensus pattern (22 bp):
TTTTTTTTTTCATCATTTTCCT
Found at i:176021178 original size:51 final size:51
Alignment explanation
Indices: 176021102--176021204 Score: 152
Period size: 51 Copynumber: 2.0 Consensus size: 51
176021092 CCTCATAACC
** * *
176021102 CTATCATGTAATGCCCGCTCATTGAGCTACTCATTGGTTTGCACTCAAGGT
1 CTATCATGTAATGCCCGCTCATTGAGCTACTCACAGATCTGCACTCAAGGT
**
176021153 CTATCATGTAATGTTCGCTCATTGAGCTACTCACAGATCTGCACTCAAGGT
1 CTATCATGTAATGCCCGCTCATTGAGCTACTCACAGATCTGCACTCAAGGT
176021204 C
1 C
176021205 AGTACCTGGA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.32
Consensus pattern (51 bp):
CTATCATGTAATGCCCGCTCATTGAGCTACTCACAGATCTGCACTCAAGGT
Found at i:176023464 original size:29 final size:29
Alignment explanation
Indices: 176023425--176023503 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
176023415 CTTAATAATC
*
176023425 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
176023455 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
176023484 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
176023504 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:176024636 original size:17 final size:18
Alignment explanation
Indices: 176024599--176024636 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
176024589 CACTTTTTTT
176024599 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
176024618 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
176024635 TT
1 TT
176024637 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:176029623 original size:29 final size:29
Alignment explanation
Indices: 176029584--176029662 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
176029574 CTTAATAATC
*
176029584 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
176029614 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
176029643 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
176029663 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:176032221 original size:48 final size:47
Alignment explanation
Indices: 176032104--176032323 Score: 241
Period size: 48 Copynumber: 4.6 Consensus size: 47
176032094 TGAGATTCCT
* *
176032104 TGTAAGGCCATGTCTGGGACATGGCATCGGC-ATCCGAGATATGTGCCTA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGAT--GAG-TATGTGACTA
* *
176032153 TGTAAGACCATGTCTGGGACATGGCATCCGCGATGATGTACGTG-CTA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGA-GTATGTGACTA
* *
176032200 GTGTAAGACCATGTCTGGGACATGGAATCGGCGATGATGTATGTG-CCA
1 -TGTAAGACCATGTCTGGGACATGGCATCGGCGATGA-GTATGTGACTA
* * *
176032248 GTGTAAGACCATGTTTGGGACATGGCATCAGCGATGA-TATGTGGATTCA
1 -TGTAAGACCATGTCTGGGACATGGCATCGGCGATGAGTATGT-GACT-A
*
176032297 TGTAAGACCATGTCGGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
176032324 TGGTACTTTA
Statistics
Matches: 151, Mismatches: 14, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
46 5 0.03
47 4 0.03
48 109 0.72
49 31 0.21
50 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGATGAGTATGTGACTA
Found at i:176032320 original size:96 final size:96
Alignment explanation
Indices: 176032104--176032285 Score: 271
Period size: 96 Copynumber: 1.9 Consensus size: 96
176032094 TGAGATTCCT
* *
176032104 TGTAAGGCCATGTCTGGGACATGGCATCGGCATCCGAGATATGTGCCTATGTAAGACCATGTCTG
1 TGTAAGACCATGTCTGGGACATGGAATCGGCAT-CGAGATATGTGCCTATGTAAGACCATGTCTG
*
176032169 GGACATGGCATCCGCGATGATGTACGTGCTAG
65 GGACATGGCATCAGCGATGATGTACGTGCTAG
*
176032201 TGTAAGACCATGTCTGGGACATGGAATCGGCGAT-GATG-TATGTGCC-AGTGTAAGACCATGTT
1 TGTAAGACCATGTCTGGGACATGGAATCGGC-ATCGA-GATATGTGCCTA-TGTAAGACCATGTC
176032263 TGGGACATGGCATCAGCGATGAT
63 TGGGACATGGCATCAGCGATGAT
176032286 ATGTGGATTC
Statistics
Matches: 78, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
95 1 0.01
96 45 0.58
97 30 0.38
98 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGACATGGAATCGGCATCGAGATATGTGCCTATGTAAGACCATGTCTGG
GACATGGCATCAGCGATGATGTACGTGCTAG
Found at i:176034449 original size:27 final size:27
Alignment explanation
Indices: 176034419--176034517 Score: 94
Period size: 27 Copynumber: 3.7 Consensus size: 27
176034409 TTTAGTTTAC
176034419 TAAAATTACCGAAATATCCTTAG-TTTG
1 TAAAATTACCGAAATA-CCTTAGATTTG
* * * *
176034446 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCTTAGATTTG
* * * *
176034473 TAAATTTATCGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTAGATTTG
176034500 TAAAATTACC-AAAGTACC
1 TAAAATTACCGAAA-TACC
176034518 CCCGATTTAC
Statistics
Matches: 58, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
26 7 0.12
27 51 0.88
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTAGATTTG
Found at i:176034725 original size:27 final size:27
Alignment explanation
Indices: 176034514--176034724 Score: 257
Period size: 27 Copynumber: 7.8 Consensus size: 27
176034504 ATTACCAAAG
*
176034514 TACCCCCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
176034541 TACCC-CTAATTTACATAATTACCATTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
176034568 TACCC-CTGATTTACATG-ATTATCATTT
1 TACCCTC-GATTTACA-GAATTACCGTTT
*
176034595 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
176034622 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
176034649 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
176034676 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
176034703 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
176034725 TAAAATACCC
Statistics
Matches: 162, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
26 2 0.01
27 159 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:176034733 original size:27 final size:27
Alignment explanation
Indices: 176034649--176034924 Score: 114
Period size: 27 Copynumber: 10.1 Consensus size: 27
176034639 ATTACCGTTT
* * ****
176034649 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ****
176034676 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
176034703 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * ** *
176034730 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
176034757 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* * *** *
176034784 TACCCTTGGTTTGTGAAATTA-TCGAAA
1 TACCCTCGATTTACAAAATTACT-AAAA
* ** *
176034811 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
176034838 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
176034865 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * *
176034894 TACCATTGGTTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
176034921 TACC
1 TACC
176034925 TTTGGTTTGT
Statistics
Matches: 200, Mismatches: 36, Indels: 26
0.76 0.14 0.10
Matches are distributed among these distances:
26 2 0.01
27 171 0.86
28 8 0.04
29 19 0.09
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:176034750 original size:54 final size:54
Alignment explanation
Indices: 176034638--176034842 Score: 160
Period size: 54 Copynumber: 3.8 Consensus size: 54
176034628 CAATTTACAG
* **** * ** *
176034638 AATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAG
1 AATTACCGTTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGTAA
* *
176034692 AATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAA
1 AATTACCGTTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGTAA
**** * * * *
176034746 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGA
1 AATTACCGTTTTACCCTCGA-TTTATAAAATTACTAAAATACCCTTGGTTTGTAA
* *** * * *
176034800 AATTATCGAAATACCCTCAATTTGTAAAATTACCAAAATACCC
1 AATTACCGTTTTACCCTCGATTTATAAAATTACTAAAATACCC
176034843 CTGATTTACA
Statistics
Matches: 125, Mismatches: 24, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
53 2 0.02
54 121 0.97
55 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.36
Consensus pattern (54 bp):
AATTACCGTTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGTAA
Found at i:176034750 original size:81 final size:81
Alignment explanation
Indices: 176034514--176034751 Score: 212
Period size: 81 Copynumber: 2.9 Consensus size: 81
176034504 ATTACCAAAG
* * * ***
176034514 TACCCCCGATTTACAGAATTACCGTTTTACCC-CTAATTTACATAATTACCATTTTACCC-CTGA
1 TACCCTCGACTTACAGAATTACCGTTTTACCCTC-AATTTACAAAATTACCAAAATACCCTC-GA
* ** *
176034577 TTTACATGATTA-TCATTT
64 TTTATAAAATTACT-GTTT
* ****
176034595 TACCCTCGACTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAATACCCTCGATT
*
176034660 TATAGAATTACTGTTT
66 TATAAAATTACTGTTT
* * * * * * *
176034676 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAATACCCTCGATT
*
176034741 TGTAAAATTAC
66 TATAAAATTAC
176034752 CAAAATACCC
Statistics
Matches: 132, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
81 129 0.98
82 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (81 bp):
TACCCTCGACTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAATACCCTCGATT
TATAAAATTACTGTTT
Found at i:176034788 original size:81 final size:79
Alignment explanation
Indices: 176034703--176034924 Score: 207
Period size: 81 Copynumber: 2.7 Consensus size: 79
176034693 ATTACTGTTT
* *
176034703 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTT
1 TACCCTTGATTT-CAAAATTA-TAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCT-GAT
176034768 TGTA-AAA-TTACCA-AAA
63 T-TACAAAGTTA-CAGAAA
* ** * ***
176034784 TACCCTTGGTTTGTGAAATTATCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATT
1 TACCCTTGATTT-CAAAATTAT-AAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGATT
176034849 TACAAAGTTACAGAAA
64 TACAAAGTTACAGAAA
* ** *
176034865 TACCCTTGACTTTCTAAAAATTATAGAAATACCATTGGTTTACAAAATTACTAAAATACC
1 TACCCTTGA-TTTC--AAAATTATA-AAATACCCTTGGTTTGTAAAATTACCAAAATACC
176034925 TTTGGTTTGT
Statistics
Matches: 112, Mismatches: 21, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
79 2 0.02
80 9 0.08
81 64 0.57
82 3 0.03
83 34 0.30
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (79 bp):
TACCCTTGATTTCAAAATTATAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGATTTA
CAAAGTTACAGAAA
Found at i:176034929 original size:27 final size:27
Alignment explanation
Indices: 176034716--176034933 Score: 156
Period size: 27 Copynumber: 8.0 Consensus size: 27
176034706 CCTCGATTTA
176034716 CAAAATTACTAAAATACCCTTGGTTTG
1 CAAAATTACTAAAATACCCTTGGTTTG
* * * *
176034743 TAAAATTACCAAAATACCCCTAGTTTG
1 CAAAATTACTAAAATACCCTTGGTTTG
* *
176034770 TAAAATTACCAAAATACCCTTGGTTTG
1 CAAAATTACTAAAATACCCTTGGTTTG
** * ***
176034797 TGAAATTA-TCGAAATACCCTCAATTTG
1 CAAAATTACT-AAAATACCCTTGGTTTG
* * * * *
176034824 TAAAATTACCAAAATACCCCTGATTTA
1 CAAAATTACTAAAATACCCTTGGTTTG
* *
176034851 CAAAGTTAC-AGAAATACCCTTGACTTT-
1 CAAAATTACTA-AAATACCCTTG-GTTTG
* *
176034878 CTAAAAATTA-TAGAAATACCATTGGTTTA
1 C--AAAATTACTA-AAATACCCTTGGTTTG
*
176034907 CAAAATTACTAAAATACCTTTGGTTTG
1 CAAAATTACTAAAATACCCTTGGTTTG
176034934 TTGATTTACC
Statistics
Matches: 154, Mismatches: 28, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
26 1 0.01
27 126 0.82
28 8 0.05
29 19 0.12
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (27 bp):
CAAAATTACTAAAATACCCTTGGTTTG
Found at i:176035016 original size:27 final size:27
Alignment explanation
Indices: 176034986--176035076 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
176034976 ACCCCTATTA
* *
176034986 GGTAAAAAGACCGTAAAGCCCGTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
176035013 GGTAAAGTGACCGTAAAGCCCTTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
176035040 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
176035067 GGTAAAATGA
1 GGTAAAATGA
176035077 TGAATATGCC
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 56 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:176036309 original size:9 final size:9
Alignment explanation
Indices: 176036297--176036353 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
176036287 TTTGATAAAC
176036297 ATGATATGT
1 ATGATATGT
*
176036306 ATGATATGCAC
1 ATGATATG--T
*
176036317 ATGACATGT
1 ATGATATGT
*
176036326 ATGATATGCAC
1 ATGATATG--T
176036337 ATGATATGT
1 ATGATATGT
176036346 ATGATATG
1 ATGATATG
176036354 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:176036320 original size:20 final size:20
Alignment explanation
Indices: 176036295--176036365 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
176036285 ATTTTGATAA
176036295 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
176036315 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
176036335 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
176036355 ACATGAGATGT
1 ACATGATATGT
176036366 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:176036342 original size:11 final size:11
Alignment explanation
Indices: 176036306--176036360 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
176036296 CATGATATGT
176036306 ATGATATGCAC
1 ATGATATGCAC
* *
176036317 ATGACATG--T
1 ATGATATGCAC
176036326 ATGATATGCAC
1 ATGATATGCAC
*
176036337 ATGATATG--T
1 ATGATATGCAC
176036346 ATGATATGCAC
1 ATGATATGCAC
176036357 ATGA
1 ATGA
176036361 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:176036467 original size:24 final size:24
Alignment explanation
Indices: 176036410--176036577 Score: 268
Period size: 24 Copynumber: 7.0 Consensus size: 24
176036400 GGAGGAAGTG
176036410 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
176036434 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
176036457 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
176036481 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
176036505 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
176036529 CAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
176036553 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
176036578 ATGATAAAGC
Statistics
Matches: 135, Mismatches: 6, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
23 22 0.16
24 102 0.76
25 11 0.08
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:176036804 original size:31 final size:31
Alignment explanation
Indices: 176036769--176036832 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
176036759 CGTTTACAGT
176036769 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
176036800 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
176036831 AA
1 AA
176036833 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:176041292 original size:49 final size:49
Alignment explanation
Indices: 176041234--176041616 Score: 666
Period size: 49 Copynumber: 7.9 Consensus size: 49
176041224 GTATGAGATG
*
176041234 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
176041283 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
176041332 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
176041381 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
176041428 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
176041477 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
176041524 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
176041573 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
176041617 TATATGTGTG
Statistics
Matches: 318, Mismatches: 12, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 88 0.28
49 230 0.72
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:176041458 original size:96 final size:96
Alignment explanation
Indices: 176041233--176041616 Score: 687
Period size: 96 Copynumber: 4.0 Consensus size: 96
176041223 TGTATGAGAT
* *
176041233 GTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
*
176041298 GCCTAATGGCCAATGTGATGAATGTGAAAGT
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
176041329 GTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATA
176041394 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
64 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
176041427 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
176041492 GCCTAATGGCCAATGTGATGAATGTGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
* * *
176041523 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
*
176041588 GCCTAATGGCCGATGTGATGAATGTGAAA
66 GCCTAATGGCCAATGTGATGAATGTGAAA
176041617 TATATGTGTG
Statistics
Matches: 279, Mismatches: 7, Indels: 4
0.96 0.02 0.01
Matches are distributed among these distances:
96 186 0.67
98 93 0.33
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (96 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:176041495 original size:145 final size:145
Alignment explanation
Indices: 176041233--176041616 Score: 657
Period size: 145 Copynumber: 2.6 Consensus size: 145
176041223 TGTATGAGAT
*
176041233 GTATAT-ATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
*
176041297 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATG
65 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATG
*
176041362 TGATGAATGTGAAAGT
130 TGATGAATGTGAAAGA
*
176041378 GTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG-TATATATGTGATAA
1 GTATATA-ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGATATATATGTGATAA
176041442 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATG
65 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATG
176041507 TGATGAATGTGAAAGA
130 TGATGAATGTGAAAGA
* *
176041523 GTATAT-ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAA
1 GTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
*
176041587 GGCCTAATGGCCGATGTGATGAATGTGAAA
65 GGCCTAATGGCCAATGTGATGAATGTGAAA
176041617 TATATGTGTG
Statistics
Matches: 227, Mismatches: 8, Indels: 8
0.93 0.03 0.03
Matches are distributed among these distances:
143 39 0.17
145 148 0.65
147 40 0.18
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (145 bp):
GTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGATATATATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
GATGAATGTGAAAGA
Found at i:176041665 original size:48 final size:48
Alignment explanation
Indices: 176041608--176041711 Score: 199
Period size: 48 Copynumber: 2.2 Consensus size: 48
176041598 CGATGTGATG
176041608 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
176041656 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
176041704 AATGTGAA
1 AATGTGAA
176041712 TGTTGTAACA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.33
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:176041805 original size:37 final size:37
Alignment explanation
Indices: 176041751--176041841 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
176041741 AACTTGGAAA
*
176041751 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
176041789 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
176041826 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
176041842 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:176043791 original size:40 final size:40
Alignment explanation
Indices: 176043745--176044030 Score: 271
Period size: 40 Copynumber: 7.2 Consensus size: 40
176043735 TGAATGATAC
* **
176043745 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG-ATATAT
** * * *
176043785 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCT-AG-TGATATAT
* ** * *
176043825 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTTCCGAAGAGC-ATTCGTGCTAGT-GATATAT
*
176043865 CC-GGCTAA-TTCCGAAGAGCATTCGTGCTAATGATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* * * *
176043903 CCGGGCCAAAATTCCAAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGG-CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* *
176043944 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* *
176043984 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
176044024 CCGGGCT
1 CCGGGCT
176044031 GGTCTCGAAG
Statistics
Matches: 214, Mismatches: 22, Indels: 20
0.84 0.09 0.08
Matches are distributed among these distances:
38 17 0.08
39 17 0.08
40 143 0.67
41 37 0.17
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:176047867 original size:49 final size:49
Alignment explanation
Indices: 176047809--176048099 Score: 455
Period size: 49 Copynumber: 5.9 Consensus size: 49
176047799 GTATGAGATG
*
176047809 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
176047858 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
176047905 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTAATGTGAAAGTG-A
1 TATATATGTGATAAGGCCTAATGGCCAA--TG-TG-ATG-AATGTGAAAGTGTA
*
176047958 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
1 -TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
176048008 TA-ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
176048056 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
176048100 ATATGTGTGA
Statistics
Matches: 227, Mismatches: 6, Indels: 18
0.90 0.02 0.07
Matches are distributed among these distances:
47 28 0.12
48 45 0.20
49 101 0.44
50 6 0.03
51 5 0.02
52 14 0.06
54 28 0.12
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:176047891 original size:22 final size:22
Alignment explanation
Indices: 176047863--176047938 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
176047853 GTGTATATAT
176047863 ATGTGATAAGGCCTAATGGCCA
1 ATGTGATAAGGCCTAATGGCCA
* *** ***
176047885 ATGTGATGAATGTGAAAGTGTATA
1 ATGTGAT-AAGGCCTAA-TGGCCA
176047909 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCTAATGGCCA
176047932 ATGTGAT
1 ATGTGAT
176047939 GAATGTAATG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCA
Found at i:176048193 original size:47 final size:47
Alignment explanation
Indices: 176048091--176048193 Score: 188
Period size: 47 Copynumber: 2.2 Consensus size: 47
176048081 CGATGTGATG
*
176048091 AATGTGAAAATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
176048138 AATGTGAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
176048185 AATGTGAAT
1 AATGTGAAT
176048194 GTTGTAACAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.33, C:0.06, G:0.28, T:0.33
Consensus pattern (47 bp):
AATGTGAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:176048286 original size:37 final size:37
Alignment explanation
Indices: 176048232--176048357 Score: 220
Period size: 37 Copynumber: 3.4 Consensus size: 37
176048222 AACTTGGAAA
*
176048232 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
176048270 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
176048307 TATGTCCGGGTAAGACCCGATGACTAC--GTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
176048342 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
176048358 TTCGTAATAA
Statistics
Matches: 87, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
35 24 0.28
37 59 0.68
38 4 0.05
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:176051435 original size:39 final size:40
Alignment explanation
Indices: 176051381--176051486 Score: 196
Period size: 40 Copynumber: 2.7 Consensus size: 40
176051371 CTTGCACAAT
176051381 TGCCTTCGGGTCTTAGCCCGGATATAACAA-CCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACCCGCACGAA
*
176051420 TGCCTTCAGGTCTTAGCCCGGATATAACAACCCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACCCGCACGAA
176051460 TGCCTTCGGGTCTTAGCCCGGATATAA
1 TGCCTTCGGGTCTTAGCCCGGATATAA
176051487 TCACTAGCAT
Statistics
Matches: 64, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 29 0.45
40 35 0.55
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.23
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACAACCCGCACGAA
Found at i:176051502 original size:40 final size:39
Alignment explanation
Indices: 176051321--176051520 Score: 179
Period size: 40 Copynumber: 5.0 Consensus size: 39
176051311 GATTCAACCA
* * * *
176051321 GATATAACCACAAGCACAATTGCCTTTGGGTCTTAACCCG
1 GATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGCCCG
* * * *
176051361 GATTTGGTA-ACTTGCACAATTGCCTTCGGGTCTTAGCCCG
1 GATAT--AACACTAGCACAAATGCCTTCGGGTCTTAGCCCG
* * *
176051401 GATATAACAAC-CGCACGAATGCCTTCAGGTCTTAGCCCG
1 GATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCG
** *
176051440 GATATAACAACCCGCACGAATGCCTTCGGGTCTTAGCCCG
1 GATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCG
* * *
176051480 GATATAATCACTAGCATAAATGCCTTCGAGACTTAGCCCG
1 GATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGCCCG
176051520 G
1 G
176051521 GTATCATTCA
Statistics
Matches: 135, Mismatches: 19, Indels: 12
0.81 0.11 0.07
Matches are distributed among these distances:
38 1 0.01
39 35 0.26
40 97 0.72
41 1 0.01
42 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
GATATAACACTAGCACAAATGCCTTCGGGTCTTAGCCCG
Done.