Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 572 of 770
Found at i:178390387 original size:38 final size:38
Alignment explanation
Indices: 178390280--178390387 Score: 180
Period size: 38 Copynumber: 2.8 Consensus size: 38
178390270 TCAATCATGC
* *
178390280 ACTGGGCCGTAGCCCTTTTCATATTTCATATCTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
178390319 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
178390357 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
178390388 ACTGGGCCGA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 54 0.83
39 11 0.17
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:178390642 original size:24 final size:24
Alignment explanation
Indices: 178390596--178390713 Score: 145
Period size: 23 Copynumber: 5.0 Consensus size: 24
178390586 GCTTTATCAT
*
178390596 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
178390621 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
178390645 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
**
178390668 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
178390692 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
178390714 TCACTTCCTC
Statistics
Matches: 84, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
23 39 0.46
24 32 0.38
25 13 0.15
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:178390675 original size:47 final size:48
Alignment explanation
Indices: 178390596--178390713 Score: 163
Period size: 47 Copynumber: 2.5 Consensus size: 48
178390586 GCTTTATCAT
*
178390596 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
178390645 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
178390692 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
178390714 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
46 18 0.28
47 26 0.40
48 9 0.14
49 12 0.18
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:178390789 original size:20 final size:20
Alignment explanation
Indices: 178390764--178390823 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
178390754 TATGATTACC
178390764 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
178390784 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
178390804 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
178390824 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:178390898 original size:25 final size:25
Alignment explanation
Indices: 178390866--178390913 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
178390856 ATACATAAAC
* * *
178390866 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
178390891 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
178390914 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:178394329 original size:42 final size:43
Alignment explanation
Indices: 178394270--178394378 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 43
178394260 TGACATTAGG
* * *
178394270 GTTATGAG-TTTACATGTAAGACCATATTTGAGATATGGCATC
1 GTTATGAGATTTACATGTAAAACCATATCTGAGACATGGCATC
* *
178394312 GTTATGAGATTT-CATGTAAAACCATGTCTGGGACATGGCATC
1 GTTATGAGATTTACATGTAAAACCATATCTGAGACATGGCATC
* * *
178394354 GATATGAGA-AT-CGTGTAAAACCATA
1 GTTATGAGATTTACATGTAAAACCATA
178394379 GCTGGGCTAT
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
41 13 0.23
42 41 0.72
43 3 0.05
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (43 bp):
GTTATGAGATTTACATGTAAAACCATATCTGAGACATGGCATC
Found at i:178394444 original size:42 final size:40
Alignment explanation
Indices: 178394282--178394444 Score: 121
Period size: 42 Copynumber: 3.9 Consensus size: 40
178394272 TATGAGTTTA
* * * * *
178394282 CATGTAAGACCATATTTGAGATATGGCATCGTTATGAGATTT
1 CATGTAAAACCATATCTGGGATATAGCATCGGTATGAGA--T
* * * *
178394324 CATGTAAAACCATGTCTGGGACATGGCATCGATATGAGAAT
1 CATGTAAAACCATATCTGGGATATAGCATCGGTATGAG-AT
* * *
178394365 CGTGTAAAACCATAGCTGGGCTATTAGCAT-GGATATGAGAT
1 CATGTAAAACCATATCTGGGATA-TAGCATCGG-TATGAGAT
* * *
178394406 CCCATGTAAGACCATATCTGGGATATAACATTGGTATGA
1 --CATGTAAAACCATATCTGGGATATAGCATCGGTATGA
178394445 TTCTATGTGT
Statistics
Matches: 97, Mismatches: 18, Indels: 12
0.76 0.14 0.09
Matches are distributed among these distances:
41 22 0.23
42 53 0.55
43 22 0.23
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (40 bp):
CATGTAAAACCATATCTGGGATATAGCATCGGTATGAGAT
Found at i:178399973 original size:27 final size:26
Alignment explanation
Indices: 178399937--178400048 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
178399927 CAGCATGGCT
* * *
178399937 ACCAGAACAGATAATGTGACGGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
178399963 ACCAGATACAGATAATCGTGGCAGAGCC
1 ACCAGA-ACAGATAAT-GTGGCAGAGCC
178399991 ACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* *
178400018 ACCAGATCA-ATAATTGTGGCATAGCC
1 ACCAGAACAGATAA-TGTGGCAGAGCC
178400044 ACCAG
1 ACCAG
178400049 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 5, Indels: 8
0.86 0.06 0.09
Matches are distributed among these distances:
25 1 0.01
26 25 0.32
27 35 0.45
28 16 0.21
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:178400044 original size:53 final size:54
Alignment explanation
Indices: 178399937--178400048 Score: 156
Period size: 53 Copynumber: 2.1 Consensus size: 54
178399927 CAGCATGGCT
* *
178399937 ACCAGAACAGATAATGTGACGGAGTCACCAGATACAGATAATCGTGGCAGAGCC
1 ACCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCC
* * *
178399991 ACCAGAACAGATATATGTGGCAGAGCCACCAGAT-CA-ATAATTGTGGCATAGCC
1 ACCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCC
178400044 ACCAG
1 ACCAG
178400049 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
53 20 0.38
54 15 0.29
55 17 0.33
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (54 bp):
ACCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCC
Found at i:178400216 original size:28 final size:26
Alignment explanation
Indices: 178400154--178400216 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
178400144 AAAGTAACCC
** * *
178400154 TAGGGGTATAATGGTAATTTTTCACC
1 TAGGGGTATAACAGTAATTTTCCACA
178400180 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTTCC--ACA
178400208 TAGGGGTAT
1 TAGGGGTAT
178400217 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 20 0.65
28 11 0.35
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.35
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTCCACA
Found at i:178407831 original size:27 final size:26
Alignment explanation
Indices: 178407767--178407877 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
178407757 AGCATGGCTT
* * *
178407767 CCAGAACAGAT-ATGTGACGGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
178407792 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
178407820 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
** *
178407847 CCAGATTAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
178407874 CCAG
1 CCAG
178407878 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
25 5 0.07
26 7 0.09
27 47 0.63
28 16 0.21
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:178407873 original size:54 final size:53
Alignment explanation
Indices: 178407767--178407877 Score: 143
Period size: 54 Copynumber: 2.1 Consensus size: 53
178407757 AGCATGGCTT
* *
178407767 CCAGAACAGATATGTGACGGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * * *
178407820 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-TAGATAATTGTGGCATAGCCA
1 CCAGAACAG--ATATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
178407874 CCAG
1 CCAG
178407878 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 9 0.18
54 22 0.44
55 19 0.38
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (53 bp):
CCAGAACAGATATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:178412758 original size:46 final size:46
Alignment explanation
Indices: 178412705--178412880 Score: 175
Period size: 46 Copynumber: 3.8 Consensus size: 46
178412695 TATTTGGGCA
178412705 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
*
178412751 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTGAA-T--G
* * * *
178412796 CATCCGAGCTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * *
178412844 -CCCAAGCTCATTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
178412881 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 11, Indels: 24
0.75 0.08 0.17
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
44 1 0.01
45 4 0.04
46 56 0.52
47 26 0.24
48 1 0.01
49 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:178412860 original size:93 final size:93
Alignment explanation
Indices: 178412701--178412872 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
178412691 AGGATATTTG
* * * *
178412701 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCATTGAG
178412766 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
178412794 GGCATCCGAGCTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAACG-CCCAAGCTCATTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAA-CTCATTGA
*
178412858 GTTGAGTCTGAGTTC
65 GTTGAGTCCGAGTTC
178412873 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 4 0.06
93 67 0.94
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:178416707 original size:43 final size:43
Alignment explanation
Indices: 178416657--178416743 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
178416647 ATTTGTGATT
** **
178416657 TCGATATGTGTTTACGA-GTAAGACCCTGTCTGGGACAGTGGCA
1 TCGATATGTGGCTAC-ATGTAAGACCAGGTCTGGGACAGTGGCA
*
178416700 TCGATATGTGGCTACATGTAAGACCAGGTCTGGGACATTGGCA
1 TCGATATGTGGCTACATGTAAGACCAGGTCTGGGACAGTGGCA
178416743 T
1 T
178416744 TGTACGATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
42 1 0.03
43 37 0.97
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (43 bp):
TCGATATGTGGCTACATGTAAGACCAGGTCTGGGACAGTGGCA
Found at i:178421725 original size:29 final size:29
Alignment explanation
Indices: 178421590--178421721 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
178421580 GTGACGAGAT
178421590 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
178421619 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
178421648 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
178421677 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
178421706 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
178421722 AGCTCGGAGG
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:178421737 original size:87 final size:87
Alignment explanation
Indices: 178421589--178421778 Score: 204
Period size: 87 Copynumber: 2.2 Consensus size: 87
178421579 GGTGACGAGA
** * * * *
178421589 TTGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCAC
1 TTGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTAAGTGTGCGAGCTGGAAAGATATGGCAC
* *
178421654 TAAGTGTGCGTGCTGGAAA-TAT
66 TAAGTGTGCGAGCT-GAAATTAC
** * *
178421676 TTGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTGGGTGTGCGAGCTCGG-AGGGTATGGCA
1 TTGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTAAGTGTGCGAGCT-GGAAAGATATGGCA
** *
178421740 CTGTGTGTGCGAGCTTAAATTAC
65 CTAAGTGTGCGAGCTGAAATTAC
*
178421763 GTGGCACTAAGTGTGC
1 TTGGCACTAAGTGTGC
178421779 GAAATCGAGT
Statistics
Matches: 85, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
86 3 0.04
87 80 0.94
88 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.26
Consensus pattern (87 bp):
TTGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTAAGTGTGCGAGCTGGAAAGATATGGCAC
TAAGTGTGCGAGCTGAAATTAC
Found at i:178430844 original size:135 final size:133
Alignment explanation
Indices: 178430583--178430836 Score: 311
Period size: 135 Copynumber: 1.9 Consensus size: 133
178430573 ATAAAAAAAT
178430583 ATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTATCAACTTTACATA
1 ATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTATCAACTTTACATA
* * ** **
178430648 GAGTTAGGATTAGTGTTAATTTAATCATATTTTATTTAATAAGTTCTTTTTCAAATAATAATAAT
66 GAGTTAGGATTAGTGTTAATATAATCATATTTTATTTAATAAATTCAATAGCAAATAATAATAAT
178430713 AAG
131 AAG
*
178430716 ATGATAATCT-TTAATATATAATTATATCTATTATAATTTATATATTAA-TATTTATCAA-TTTA
1 ATGATAAT-TATTAATATATAATTATATCCATTATAA--TATATATTAATTA-TTATCAACTTTA
* * *
178430778 GCATAGATTTAGGATTAGTTTTAATCATATTTCAT-TTTTATTTAAATAAATT-AATAGCA
62 -CATAGAGTTAGGATTAGTGTTAAT-ATA-ATCATATTTTATTT-AATAAATTCAATAGCA
178430837 TTGATAATTT
Statistics
Matches: 103, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
133 33 0.32
134 7 0.07
135 39 0.38
136 13 0.13
137 11 0.11
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (133 bp):
ATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTATCAACTTTACATA
GAGTTAGGATTAGTGTTAATATAATCATATTTTATTTAATAAATTCAATAGCAAATAATAATAAT
AAG
Found at i:178432087 original size:2 final size:2
Alignment explanation
Indices: 178432080--178432113 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
178432070 ACTTATGTAG
178432080 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
178432114 GGCACTTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:178432750 original size:40 final size:40
Alignment explanation
Indices: 178432693--178432910 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
178432683 CGGATGATAA
* * *
178432693 CCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
178432733 CCGGGCTAAGTCCCGAAGGCATTTGTGCGATTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
178432773 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
178432813 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
178432853 CCGGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
178432893 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
178432911 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 17 0.10
40 146 0.89
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:178437961 original size:54 final size:54
Alignment explanation
Indices: 178437772--178437968 Score: 200
Period size: 55 Copynumber: 3.6 Consensus size: 54
178437762 AACTTACCAT
* * * * *
178437772 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCATCAA
1 TGCCATGCCTTAACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATAAA
* * ** * *
178437825 TGCCTTGCCTTAGCATGGTCTTACATGGGA-CCTTTGCCATATATTAACTCATAAA
1 TGCCATGCCTTAACATGGTCTTACATGATATCC-TTGCCTTATA-GAACTCATAAA
* * * *
178437880 TGCCATGTCTTAACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATTAA
1 TGCCATGCCTTAACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATAAA
* **
178437934 TGTCATGCCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGCCTTAACATGGTCTTACATGATATCCTT
178437969 ATCTTACCAA
Statistics
Matches: 116, Mismatches: 24, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
52 2 0.02
53 32 0.28
54 38 0.33
55 42 0.36
56 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.38
Consensus pattern (54 bp):
TGCCATGCCTTAACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATAAA
Found at i:178438000 original size:47 final size:47
Alignment explanation
Indices: 178437947--178438068 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
178437937 CATGCCTTGG
* *
178437947 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
* *
178437994 CATGGTCTTACATGGTATCGTTGTCTTATCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
178438041 CATGGTCTTACATGGGATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
178438069 GTGCCAATGC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:178438102 original size:48 final size:48
Alignment explanation
Indices: 178438040--178438156 Score: 130
Period size: 47 Copynumber: 2.5 Consensus size: 48
178438030 CATGTTCCAA
* * *
178438040 ACATGGTCTTACATGGGATCCTTGT-CTTAGTGCCAATGCCACATCTTG
1 ACATGGTCTTACATGGGATCCTT-TAATCAATGCCAATGCCACATCTTG
** * * **
178438088 ATGTGGTCTTACATGGG-GCCTTTAATCAATGCCGATGCCATGTCTTG
1 ACATGGTCTTACATGGGATCCTTTAATCAATGCCAATGCCACATCTTG
178438135 ACATGGTCTTACATGGGATCCT
1 ACATGGTCTTACATGGGATCCT
178438157 CGCCTTATCA
Statistics
Matches: 55, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
46 1 0.02
47 36 0.65
48 18 0.33
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (48 bp):
ACATGGTCTTACATGGGATCCTTTAATCAATGCCAATGCCACATCTTG
Found at i:178443770 original size:27 final size:27
Alignment explanation
Indices: 178443722--178443776 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
178443712 CAGTAACAGT
* * *
178443722 TGGGCCTAGCCCATTAATAGAATTAGG
1 TGGGCCTAGCCCAGTAACAGAATCAGG
178443749 TGGGCCTGAGCCCAGT-ACAGAATCAGG
1 TGGGCCT-AGCCCAGTAACAGAATCAGG
178443776 T
1 T
178443777 ATCAGATGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (27 bp):
TGGGCCTAGCCCAGTAACAGAATCAGG
Found at i:178447441 original size:37 final size:37
Alignment explanation
Indices: 178447388--178447478 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
178447378 TATAAAAGAA
178447388 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
178447425 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
178447462 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
178447479 TTCCAAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:178447629 original size:49 final size:49
Alignment explanation
Indices: 178447574--178447877 Score: 473
Period size: 49 Copynumber: 6.4 Consensus size: 49
178447564 TTTTACATTA
178447574 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
178447623 GCCATTAGGCCTTATCACATATACATACACTTTTACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
178447672 GCCATTAGG------C-C-T-TACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
178447712 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
178447761 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
178447810 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
178447859 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
178447878 CACATATGTA
Statistics
Matches: 236, Mismatches: 10, Indels: 18
0.89 0.04 0.07
Matches are distributed among these distances:
40 36 0.15
41 1 0.00
42 1 0.00
43 1 0.00
46 1 0.00
47 1 0.00
48 1 0.00
49 194 0.82
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:178447688 original size:89 final size:89
Alignment explanation
Indices: 178447595--178447872 Score: 421
Period size: 89 Copynumber: 3.0 Consensus size: 89
178447585 TTATCACATA
*
178447595 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTTACA
1 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
178447660 TTCACCACATCGGCCATTAGGCCT
66 TTCACCACATCGGCCATTAGGCCT
178447684 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
1 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
178447749 TTCACCACATCGGCCATTAGGCCT
66 TTCACCACATCGGCCATTAGGCCT
*
178447773 CATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATAC
1 --T-AC--AT--A--CACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATAC
* * * *
178447838 ACTTTCACATTCATCGCATTGGCCATTCGGCCT
57 ACTTTCACATTCACCACATCGGCCATTAGGCCT
178447871 TA
1 TA
178447873 TCACACACAT
Statistics
Matches: 174, Mismatches: 6, Indels: 12
0.91 0.03 0.06
Matches are distributed among these distances:
89 88 0.51
91 1 0.01
92 2 0.01
94 2 0.01
95 1 0.01
96 2 0.01
98 78 0.45
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (89 bp):
TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
TTCACCACATCGGCCATTAGGCCT
Found at i:178447822 original size:138 final size:138
Alignment explanation
Indices: 178447574--178447823 Score: 464
Period size: 138 Copynumber: 1.8 Consensus size: 138
178447564 TTTTACATTA
*
178447574 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
*
178447639 ACATATACATACACTTTTACATTCACCACATCGGCCATTAGGCCTTACATACACTTTCACATTCA
66 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTACATACACTTTCACATTCA
178447704 CCACATCG
131 CCACATCG
178447712 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
* *
178447777 ACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTA
66 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTA
178447824 TCACATATAC
Statistics
Matches: 108, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
138 108 1.00
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (138 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTACATACACTTTCACATTCA
CCACATCG
Found at i:178450505 original size:29 final size:29
Alignment explanation
Indices: 178450469--178450661 Score: 341
Period size: 29 Copynumber: 6.7 Consensus size: 29
178450459 TGTTGAAAAA
*
178450469 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
178450498 CTCGCACACGTAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
178450527 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
178450556 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
178450585 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
178450614 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
178450643 CTCGCACACATAGTGCCTC
1 CTCGCACACATAGTGCCTC
178450662 TATTCATTCG
Statistics
Matches: 158, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 158 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACTGAT
Found at i:178450891 original size:40 final size:40
Alignment explanation
Indices: 178450834--178451038 Score: 293
Period size: 40 Copynumber: 5.1 Consensus size: 40
178450824 CGAATACACG
* *
178450834 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
178450874 TCACTAGCACGAATGCTCTTCGGGACTTTGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
178450914 TCACTAGCACGAATGCTCTTCGGGACTTTGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
178450954 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * *
178450994 TCACTAGCATGAATGCTCTTCGGAACTTAGTCTGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
178451034 TCACT
1 TCACT
178451039 CTCAATTCTC
Statistics
Matches: 155, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 155 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:178452910 original size:37 final size:37
Alignment explanation
Indices: 178452857--178452947 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
178452847 TATAAAAGAA
178452857 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
178452894 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
178452931 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
178452948 TTCCAAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:178453098 original size:49 final size:49
Alignment explanation
Indices: 178453043--178453346 Score: 482
Period size: 49 Copynumber: 6.4 Consensus size: 49
178453033 TTTTACATTA
178453043 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
178453092 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
178453141 GCCATTAGG------C-C-T-TACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
178453181 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
178453230 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
178453279 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
178453328 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
178453347 CACATATGTA
Statistics
Matches: 238, Mismatches: 8, Indels: 18
0.90 0.03 0.07
Matches are distributed among these distances:
40 37 0.16
41 1 0.00
42 1 0.00
43 1 0.00
46 1 0.00
47 1 0.00
48 1 0.00
49 195 0.82
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:178453160 original size:89 final size:89
Alignment explanation
Indices: 178453064--178453341 Score: 430
Period size: 89 Copynumber: 3.0 Consensus size: 89
178453054 TTATCACATA
178453064 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
1 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
178453129 TTCACCACATCGGCCATTAGGCCT
66 TTCACCACATCGGCCATTAGGCCT
178453153 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
1 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
178453218 TTCACCACATCGGCCATTAGGCCT
66 TTCACCACATCGGCCATTAGGCCT
*
178453242 CATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATAC
1 --T-AC--AT--A--CACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATAC
* * * *
178453307 ACTTTCACATTCATCGCATTGGCCATTCGGCCT
57 ACTTTCACATTCACCACATCGGCCATTAGGCCT
178453340 TA
1 TA
178453342 TCACACACAT
Statistics
Matches: 175, Mismatches: 5, Indels: 12
0.91 0.03 0.06
Matches are distributed among these distances:
89 89 0.51
91 1 0.01
92 2 0.01
94 2 0.01
95 1 0.01
96 2 0.01
98 78 0.45
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (89 bp):
TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
TTCACCACATCGGCCATTAGGCCT
Found at i:178453291 original size:138 final size:138
Alignment explanation
Indices: 178453043--178453292 Score: 473
Period size: 138 Copynumber: 1.8 Consensus size: 138
178453033 TTTTACATTA
*
178453043 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
178453108 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTACATACACTTTCACATTCA
66 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTACATACACTTTCACATTCA
178453173 CCACATCG
131 CCACATCG
178453181 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
* *
178453246 ACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTA
66 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTA
178453293 TCACATATAC
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
138 109 1.00
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.28
Consensus pattern (138 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTACATACACTTTCACATTCA
CCACATCG
Found at i:178455645 original size:22 final size:25
Alignment explanation
Indices: 178455620--178455664 Score: 60
Period size: 22 Copynumber: 1.9 Consensus size: 25
178455610 CTGTTGAGAT
178455620 ATTTGAGG-G-AAAT-GTGGGGAGG
1 ATTTGAGGAGAAAATCGTGGGGAGG
*
178455642 ATTTTAGGAGAAAATCGTGGGGA
1 ATTTGAGGAGAAAATCGTGGGGA
178455665 TTTGTAGTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 7 0.37
23 1 0.05
24 4 0.21
25 7 0.37
ACGTcount: A:0.31, C:0.02, G:0.42, T:0.24
Consensus pattern (25 bp):
ATTTGAGGAGAAAATCGTGGGGAGG
Found at i:178457159 original size:27 final size:27
Alignment explanation
Indices: 178457111--178457294 Score: 201
Period size: 27 Copynumber: 6.9 Consensus size: 27
178457101 CCTAATTGGT
*
178457111 AAAATGACT-ATTT-CCCTTATATGGC
1 AAAATGACTGTTTTGCCCTTATATGGC
178457136 AAAATGACTGTTTTGCCCTTATATGGC
1 AAAATGACTGTTTTGCCCTTATATGGC
* *
178457163 AAAATGATTGTTTTGCCCTTATGTGGC
1 AAAATGACTGTTTTGCCCTTATATGGC
* * *
178457190 AAAATGACTGTTTTACCATTATGTGGC
1 AAAATGACTGTTTTGCCCTTATATGGC
* * * *
178457217 AAAATGACTATTTTGCCATTTTATGGT
1 AAAATGACTGTTTTGCCCTTATATGGC
* ** **
178457244 AAAATGACGGTTTTGCCCTTACGTGAT
1 AAAATGACTGTTTTGCCCTTATATGGC
* *
178457271 AAAATAACTATTTTGCCCTTATAT
1 AAAATGACTGTTTTGCCCTTATAT
178457295 CGTAAGCTAA
Statistics
Matches: 134, Mismatches: 23, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
25 9 0.07
26 3 0.02
27 122 0.91
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (27 bp):
AAAATGACTGTTTTGCCCTTATATGGC
Found at i:178457324 original size:54 final size:54
Alignment explanation
Indices: 178457110--178457324 Score: 137
Period size: 54 Copynumber: 4.0 Consensus size: 54
178457100 CCCTAATTGG
* * * * * * * *
178457110 TAAAATGACTA-TTT-CCCTTATATGGCAAAATGACTGTTTTGCCCTTATATGG
1 TAAAATAACTATTTTGCCATTATATCGTAAAATAACTGTTTTACCCTTATGTGA
* * * * * * * * * * *
178457162 CAAAATGATTGTTTTGCCCTTATGTGGCAAAATGACTGTTTTACCATTATGTGG
1 TAAAATAACTATTTTGCCATTATATCGTAAAATAACTGTTTTACCCTTATGTGA
* * * * * * * *
178457216 CAAAATGACTATTTTGCCATTTTATGGTAAAATGACGGTTTTGCCCTTACGTGA
1 TAAAATAACTATTTTGCCATTATATCGTAAAATAACTGTTTTACCCTTATGTGA
* ** *
178457270 TAAAATAACTATTTTGCCCTTATATCGTAAGCTAACTGTTTTACCCCTATGTGA
1 TAAAATAACTATTTTGCCATTATATCGTAAAATAACTGTTTTACCCTTATGTGA
178457324 T
1 T
178457325 GTATGTTTAT
Statistics
Matches: 131, Mismatches: 30, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
52 8 0.06
53 3 0.02
54 120 0.92
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (54 bp):
TAAAATAACTATTTTGCCATTATATCGTAAAATAACTGTTTTACCCTTATGTGA
Found at i:178460113 original size:40 final size:39
Alignment explanation
Indices: 178460056--178460240 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
178460046 ATTAAATGAT
* * *
178460056 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
178460096 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
178460136 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
178460176 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
178460216 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
178460241 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:178460192 original size:80 final size:80
Alignment explanation
Indices: 178460055--178460261 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
178460045 AATTAAATGA
* * ** * *
178460055 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
178460120 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
178460133 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
178460198 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
178460215 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
178460262 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:178460246 original size:40 final size:39
Alignment explanation
Indices: 178460054--178460261 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
178460044 CAATTAAATG
* * ** *
178460054 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
178460094 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
178460134 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
178460174 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
178460214 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
178460254 ATATCCGG
1 ATATCCGG
178460262 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:178468085 original size:40 final size:39
Alignment explanation
Indices: 178468028--178468212 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
178468018 ATTAAATGAT
* * *
178468028 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
178468068 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
178468108 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
178468148 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
178468188 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
178468213 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:178468164 original size:80 final size:80
Alignment explanation
Indices: 178468027--178468233 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
178468017 AATTAAATGA
* * ** * *
178468027 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
178468092 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
178468105 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
178468170 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
178468187 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
178468234 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:178468218 original size:40 final size:39
Alignment explanation
Indices: 178468026--178468233 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
178468016 CAATTAAATG
* * ** *
178468026 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
178468066 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
178468106 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
178468146 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
178468186 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
178468226 ATATCCGG
1 ATATCCGG
178468234 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:178471081 original size:40 final size:40
Alignment explanation
Indices: 178471032--178471279 Score: 284
Period size: 40 Copynumber: 6.2 Consensus size: 40
178471022 TCTTCGGAAT
* * *
178471032 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
178471071 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
178471111 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *** *
178471151 TTAGCCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
178471191 TTAGCCCAGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
178471231 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
178471271 TTAGCCCGG
1 TTAGCCCGG
178471280 GTATCATTCA
Statistics
Matches: 173, Mismatches: 34, Indels: 3
0.82 0.16 0.01
Matches are distributed among these distances:
39 3 0.02
40 169 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:178471159 original size:80 final size:80
Alignment explanation
Indices: 178471032--178471279 Score: 365
Period size: 80 Copynumber: 3.1 Consensus size: 80
178471022 TCTTCGGAAT
* ** *
178471032 TTAG-CCGGATATAACCACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCA
1 TTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATTTGGTAACTTGCA
178471095 CAAATGCCTTCGGGTC
65 CAAATGCCTTCGGGTC
178471111 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATTTGGTAACTTGCAC
178471176 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* * ** * * *
178471191 TTAGCCCAGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCAT
1 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATTTGGTAACTTGCAC
*
178471256 AAATGCCTTCGGGAC
66 AAATGCCTTCGGGTC
178471271 TTAGCCCGG
1 TTAGCCCGG
178471280 GTATCATTCA
Statistics
Matches: 154, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
79 4 0.03
80 148 0.96
81 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATTTGGTAACTTGCAC
AAATGCCTTCGGGTC
Found at i:178471261 original size:120 final size:120
Alignment explanation
Indices: 178471052--178471279 Score: 323
Period size: 120 Copynumber: 1.9 Consensus size: 120
178471042 ATAACCACAA
* * * *** *
178471052 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCAGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * *
178471117 CGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATTTGGTAACTT
66 CGGATATAACAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGTAACTT
* *
178471172 GCACAAATGCCTTCGGGTCTTAGCCCAGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCAGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
178471237 CGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGCCCGG
66 CGGATATAA-CAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
178471280 GTATCATTCA
Statistics
Matches: 94, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
120 93 0.99
121 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (120 bp):
GCACAAATGCCTTCGGGTCTTAACCCAGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATAACAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGTAACTT
Found at i:178473407 original size:40 final size:40
Alignment explanation
Indices: 178473341--178473507 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
178473331 AAATTGAATG
* * *
178473341 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
178473380 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
178473420 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
178473460 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
178473500 ATATCCGG
1 ATATCCGG
178473508 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:178480836 original size:29 final size:29
Alignment explanation
Indices: 178480808--178480909 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
178480798 CCTCCGAGCT
** * * *
178480808 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
178480837 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
178480866 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
178480895 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
178480910 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:178488698 original size:29 final size:29
Alignment explanation
Indices: 178488670--178488771 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
178488660 CCTCCGAGCT
** * * *
178488670 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
178488699 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
178488728 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
178488757 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
178488772 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:178494201 original size:88 final size:88
Alignment explanation
Indices: 178494035--178494249 Score: 290
Period size: 88 Copynumber: 2.4 Consensus size: 88
178494025 ATTCATTCAT
* *
178494035 TGGCATTTCGCCTGCTAGGCTCAAAGCCCG-ATA-TCATTTTACCAGCATTATAGCCTGCTAGGC
1 TGGCATTTCGCCTGCTAGGCTCAAAGCCCGAATAGT-ATCTCACCAGCATTATAGCCTGCTAGGC
178494098 TCAAAAACCCGAATAGTATCTCAC
65 TCAAAAACCCGAATAGTATCTCAC
* * * *
178494122 TGGCATTTCGCCTGCTAGGCTCGAAGCCTGAATAGTATCTCACCGGCATTATAGCCTGCTAGGTT
1 TGGCATTTCGCCTGCTAGGCTCAAAGCCCGAATAGTATCTCACCAGCATTATAGCCTGCTAGGCT
* **
178494187 TAAAGGCCCGAATAGTATCTCAC
66 CAAAAACCCGAATAGTATCTCAC
* *
178494210 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTAT
1 TGGCATT-TCGCCTGCTAGGCTCAAA-GCCCGAATAGTAT
178494250 TGTGTGATAT
Statistics
Matches: 111, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
87 28 0.25
88 54 0.49
89 17 0.15
90 12 0.11
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (88 bp):
TGGCATTTCGCCTGCTAGGCTCAAAGCCCGAATAGTATCTCACCAGCATTATAGCCTGCTAGGCT
CAAAAACCCGAATAGTATCTCAC
Found at i:178494207 original size:45 final size:45
Alignment explanation
Indices: 178494036--178494249 Score: 269
Period size: 45 Copynumber: 4.9 Consensus size: 45
178494026 TTCATTCATT
* * *
178494036 GGCATT-TCGCCTGCTAGGCTCAAA-GCCCG-ATA-TCATTTTACC
1 GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATCTCACC
* ** *
178494078 AGCATTATAGCCTGCTAGGCTCAAAAACCCGAATAGTATCTCACT
1 GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACC
* * *
178494123 GGCATT-TCGCCTGCTAGGCTCGAA-GCCTGAATAGTATCTCACC
1 GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACC
* *
178494166 GGCATTATAGCCTGCTAGGTTTAAAGGCCCGAATAGTATCTCACC
1 GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACC
178494211 GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTAT
1 GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTAT
178494250 TGTGTGATAT
Statistics
Matches: 147, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
42 5 0.03
43 39 0.27
44 34 0.23
45 68 0.46
46 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (45 bp):
GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACC
Found at i:178495276 original size:34 final size:35
Alignment explanation
Indices: 178495231--178495299 Score: 88
Period size: 34 Copynumber: 2.0 Consensus size: 35
178495221 TCGAGCCCAT
*
178495231 TGGGCCTAAGCCCCATTCAG-ATAACAGTA-CAAAG
1 TGGGCCAAAGCCCCATTCAGAAT-ACAGTAGCAAAG
**
178495265 TGGGCCAAAGCCCTTTTCAGAATACAGTAGCAAAG
1 TGGGCCAAAGCCCCATTCAGAATACAGTAGCAAAG
178495300 CGTTAGCCCT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
34 23 0.77
35 7 0.23
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.19
Consensus pattern (35 bp):
TGGGCCAAAGCCCCATTCAGAATACAGTAGCAAAG
Found at i:178503264 original size:29 final size:29
Alignment explanation
Indices: 178503224--178503326 Score: 188
Period size: 29 Copynumber: 3.6 Consensus size: 29
178503214 TTTTCCACTT
178503224 GCACACTTAGTGCCAAATATTTCCAGCAC
1 GCACACTTAGTGCCAAATATTTCCAGCAC
*
178503253 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCAAATATTTCCAGCAC
*
178503282 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCAAATATTTCCAGCAC
178503311 GCACACTTAGTGCCAA
1 GCACACTTAGTGCCAA
178503327 TCTCGTCACC
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 72 1.00
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (29 bp):
GCACACTTAGTGCCAAATATTTCCAGCAC
Found at i:178505443 original size:40 final size:40
Alignment explanation
Indices: 178505398--178505564 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
178505388 CGGAATATAA
178505398 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
178505438 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
178505478 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
178505518 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
178505557 CCGGATAT
1 CCGGATAT
178505565 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:178513442 original size:40 final size:40
Alignment explanation
Indices: 178513397--178513563 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
178513387 CGGAATATAA
178513397 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
178513437 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
178513477 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
178513517 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
178513556 CCGGATAT
1 CCGGATAT
178513564 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:178520338 original size:68 final size:70
Alignment explanation
Indices: 178520266--178520463 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
178520256 ACACCCTGTA
* * * *
178520266 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
178520328 ATAAAT
65 ATAAAT
*
178520334 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
178520399 ATAAAT
65 ATAAAT
*
178520405 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
178520464 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:178520377 original size:41 final size:41
Alignment explanation
Indices: 178520332--178520449 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
178520322 TGAAAGATAA
178520332 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
178520373 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
178520403 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
178520444 ATGTAG
1 ATGTAG
178520450 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:178520389 original size:71 final size:71
Alignment explanation
Indices: 178520300--178520463 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
178520290 GAGATGTATC
178520300 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
178520365 AGGACA
66 AGGACA
178520371 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
178520436 AGGACA
66 AGGACA
178520442 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
178520464 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:178521911 original size:27 final size:26
Alignment explanation
Indices: 178521880--178521968 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 26
178521870 CCCTGTTTAG
* * *
178521880 AATACTTTTGTTTACTAAAATTACTGA
1 AATACCTTAGTTT-CTAAAAATACTGA
*
178521907 AATACCCTTAGTTTGTAAAAATACTGA
1 AATA-CCTTAGTTTCTAAAAATACTGA
* * * *
178521934 AATACCCTCGATTTGTAAAATTACTGA
1 AATACCTTAG-TTTCTAAAAATACTGA
*
178521961 CATACCTT
1 AATACCTT
178521969 CGACTTGTAA
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 4 0.08
27 40 0.78
28 7 0.14
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (26 bp):
AATACCTTAGTTTCTAAAAATACTGA
Found at i:178521971 original size:27 final size:27
Alignment explanation
Indices: 178521895--178521984 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
178521885 TTTTGTTTAC
*
178521895 TAAAATTACTGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
178521922 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
* *
178521949 TAAAATTACTGACATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
178521976 TAAAATTAC
1 TAAAATTAC
178521985 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:178521994 original size:54 final size:54
Alignment explanation
Indices: 178521895--178522001 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
178521885 TTTTGTTTAC
* * *
178521895 TAAAATTACTGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
178521949 TAAAATTACTGACATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACTGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
178522002 ACAGATTATC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (54 bp):
TAAAATTACTGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:178522036 original size:27 final size:27
Alignment explanation
Indices: 178521990--178522172 Score: 242
Period size: 27 Copynumber: 6.8 Consensus size: 27
178521980 ATTACCAAAG
* *
178521990 TACCCCCGATTTACAG-ATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
178522016 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
178522043 TACCCCCGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
178522070 TACCCTTGACTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
178522097 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
178522124 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
178522151 TACCCTTGATTTACAGAATTAC
1 TACCCTCGATTTACAGAATTAC
178522173 TAAAATACCC
Statistics
Matches: 141, Mismatches: 15, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
26 15 0.11
27 126 0.89
ACGTcount: A:0.27, C:0.25, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:178522181 original size:27 final size:27
Alignment explanation
Indices: 178522070--178522321 Score: 111
Period size: 27 Copynumber: 9.3 Consensus size: 27
178522060 ATTATCGTTT
* * ****
178522070 TACCCTTGACTTACAAAATTACCGTTT
1 TACCCTTGATTTACAGAATTACCAAAA
* ****
178522097 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTTGATTTACAGAATTACCAAAA
* * *****
178522124 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTTGATTTACAGAATTACCAAAA
*
178522151 TACCCTTGATTTACAGAATTACTAAAA
1 TACCCTTGATTTACAGAATTACCAAAA
*
178522178 TACCCTTAGTTTGTA-A-AATTACCAAAA
1 TACCCTT-GATT-TACAGAATTACCAAAA
* *
178522205 TACCCCTAGTTTGTA-A-AATTACCAAAA
1 TA-CCCTTGATT-TACAGAATTACCAAAA
* ** *
178522232 TACCCTTGGTTT-GTGAAATTACCGAAA
1 TACCCTTGATTTACAG-AATTACCAAAA
** ** *
178522259 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAGAATTACCAAAA
* *
178522286 TACCCCTGATTTACA-AAGTTACAAAAA
1 TACCCTTGATTTACAGAA-TTACCAAAA
178522313 TACCCTTGA
1 TACCCTTGA
178522322 CTTTCTAAAA
Statistics
Matches: 185, Mismatches: 32, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
25 1 0.01
26 9 0.05
27 165 0.89
28 8 0.04
29 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTTGATTTACAGAATTACCAAAA
Found at i:178522198 original size:54 final size:54
Alignment explanation
Indices: 178522023--178522200 Score: 142
Period size: 54 Copynumber: 3.3 Consensus size: 54
178522013 TTTTACCCCC
* * * * * **** *
178522023 GATTTACATAATTACCGTTTTACCCCCGATTTACATAATTATCGTTTTACCCTT
1 GATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCAAAATACCCTA
* * **** *
178522077 GACTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC
1 GATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCAAAATACCCTA
* * * *
178522131 GATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTAAAATACCCTTA
1 GATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCAAAATACCC-TA
*
178522186 G-TTTGTAAAATTACC
1 GATTTATAAAATTACC
178522201 AAAATACCCC
Statistics
Matches: 103, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
54 101 0.98
55 2 0.02
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (54 bp):
GATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCAAAATACCCTA
Found at i:178522225 original size:81 final size:81
Alignment explanation
Indices: 178522151--178522335 Score: 214
Period size: 81 Copynumber: 2.3 Consensus size: 81
178522141 ATTACTGTTT
* * *
178522151 TACCCTTGATTTACAG-AATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAGT
1 TACCCTTGATTT-CAGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGT
178522215 TTGTAAAATTACCAAAA
65 TTGTAAAATTACCAAAA
* ** * *
178522232 TACCCTTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GAT
1 TACCCTTGATTTCAGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTT
*
178522296 T-TACAAAGTTACAAAAA
66 TGTA-AAA-TTACCAAAA
*
178522313 TACCCTTGACTTTCTAAAAATTA
1 TACCCTTGA-TTTC-AGAAATTA
178522336 TAGAAATACA
Statistics
Matches: 86, Mismatches: 13, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
79 2 0.02
80 7 0.08
81 68 0.79
82 3 0.03
83 6 0.07
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (81 bp):
TACCCTTGATTTCAGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTT
TGTAAAATTACCAAAA
Found at i:178522360 original size:26 final size:27
Alignment explanation
Indices: 178522329--178522379 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
178522319 TGACTTTCTA
178522329 AAAATTA-TAGAAATA-CATTGGTTTAC
1 AAAATTACT-GAAATACCATTGGTTTAC
*
178522355 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCATTGGTTT
178522380 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTACTGAAATACCATTGGTTTAC
Found at i:178522376 original size:27 final size:27
Alignment explanation
Indices: 178522151--178522402 Score: 168
Period size: 27 Copynumber: 9.3 Consensus size: 27
178522141 ATTACTGTTT
* * * *
178522151 TACCCTTGATTTACAGAATTACTAAAA
1 TACCCTTGGTTTGCAAAATTACCAAAA
* *
178522178 TACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTGCAAAATTACCAAAA
* * *
178522205 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTGCAAAATTACCAAAA
** *
178522232 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTTGGTTTGCAAAATTACCAAAA
*** *
178522259 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTGCAAAATTACCAAAA
* * * * *
178522286 TACCCCTGATTTACAAAGTTACAAAAA
1 TACCCTTGGTTTGCAAAATTACCAAAA
* *
178522313 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTGC--AAAATTACCA-AAA
* * **
178522342 TA-CATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTGCAAAATTACCAAAA
* * *
178522368 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGGTTTGCAAAATTACCAAAA
*
178522395 CACCCTTG
1 TACCCTTG
178522403 TAGGATGAAA
Statistics
Matches: 180, Mismatches: 38, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
26 12 0.07
27 148 0.82
28 9 0.05
29 11 0.06
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
TACCCTTGGTTTGCAAAATTACCAAAA
Found at i:178522470 original size:27 final size:27
Alignment explanation
Indices: 178522440--178522523 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 27
178522430 TTAGTAAAAA
* *
178522440 GACCTTAAAGCCCCTATAGGGTAAAGT
1 GACCATAAAGCCCCTGTAGGGTAAAGT
178522467 GACCATAAAGCCCCTGTAGGGTAAAGT
1 GACCATAAAGCCCCTGTAGGGTAAAGT
* * *
178522494 GACCGTAATA-CCCCTGTATGGTAAAAT
1 GACCATAA-AGCCCCTGTAGGGTAAAGT
178522521 GAC
1 GAC
178522524 GAATATGCCC
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 50 0.98
28 1 0.02
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (27 bp):
GACCATAAAGCCCCTGTAGGGTAAAGT
Found at i:178523355 original size:26 final size:26
Alignment explanation
Indices: 178523326--178523471 Score: 231
Period size: 26 Copynumber: 5.7 Consensus size: 26
178523316 AAGTGTAAAC
*
178523326 GGGCTTATGCCCCAGTTTACCGAAAA
1 GGGCTTATGCCCCAGTTTATCGAAAA
*
178523352 GGGCTTATGCCCCAGTTTATTGAAAA
1 GGGCTTATGCCCCAGTTTATCGAAAA
178523378 GGGCTTATGCCCCAGTTTATCGAAAA
1 GGGCTTATGCCCCAGTTTATCGAAAA
* *
178523404 GGGCTTATGCCCTAGTTTATTGAAAA
1 GGGCTTATGCCCCAGTTTATCGAAAA
* *
178523430 GGGCTTATGCCCCAGCTTACCGAAAA
1 GGGCTTATGCCCCAGTTTATCGAAAA
178523456 GGGCTT-TGCCCCAGTT
1 GGGCTTATGCCCCAGTT
178523472 ATTAAAAAGG
Statistics
Matches: 110, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 9 0.08
26 101 0.92
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (26 bp):
GGGCTTATGCCCCAGTTTATCGAAAA
Found at i:178523404 original size:52 final size:52
Alignment explanation
Indices: 178523326--178523481 Score: 262
Period size: 52 Copynumber: 3.0 Consensus size: 52
178523316 AAGTGTAAAC
178523326 GGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAA
1 GGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAA
* *
178523378 GGGCTTATGCCCCAGTTTATCGAAAAGGGCTTATGCCCTAGTTTATTGAAAA
1 GGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAA
* *
178523430 GGGCTTATGCCCCAGCTTACCGAAAAGGGCTT-TGCCCCAG-TTATTAAAAA
1 GGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAA
178523480 GG
1 GG
178523482 CTAGGCCTCT
Statistics
Matches: 98, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
50 11 0.11
51 7 0.07
52 80 0.82
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (52 bp):
GGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAA
Found at i:178523675 original size:42 final size:42
Alignment explanation
Indices: 178523616--178523707 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
178523606 TAGTCTCCCC
* ** *
178523616 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
178523658 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
178523700 AAATGGGC
1 AAATGGGC
178523708 CTATGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:178523766 original size:31 final size:31
Alignment explanation
Indices: 178523731--178523809 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
178523721 CGTTTACAGT
178523731 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
178523762 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
178523793 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
178523810 AATCGTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:178527408 original size:29 final size:29
Alignment explanation
Indices: 178527369--178527443 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
178527359 GGTTGAGAGA
* *
178527369 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
178527398 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
178527427 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
178527444 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:178535303 original size:29 final size:29
Alignment explanation
Indices: 178535264--178535338 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
178535254 GGTTGAGAGA
* *
178535264 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
178535293 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
178535322 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
178535339 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:178538614 original size:71 final size:71
Alignment explanation
Indices: 178538526--178538689 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
178538516 GAGATGTATC
178538526 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
178538591 AGGACA
66 AGGACA
*
178538597 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
178538662 CGGACA
66 AGGACA
178538668 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
178538690 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:178545687 original size:71 final size:71
Alignment explanation
Indices: 178545599--178545762 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
178545589 GAGATGTATC
178545599 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
178545664 AGGACA
66 AGGACA
*
178545670 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
178545735 CGGACA
66 AGGACA
178545741 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
178545763 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:178551753 original size:49 final size:49
Alignment explanation
Indices: 178551680--178551854 Score: 224
Period size: 49 Copynumber: 3.5 Consensus size: 49
178551670 TGAGGTCACG
*
178551680 TGTGTAGTACTAAGTGCAGACTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
* * * * * * *
178551729 TGTGTAGTACTAAGTGTAGGCTACTATGTGTATCGGAAAACTTTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA--TTGGTCGCA
* * *
178551780 TGTGTAGTACTAAGTGCAGGCTACTACGTTTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
*
178551829 TGTGTAGTACTAAGTGCAGGATACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
178551855 TGCGTACCAG
Statistics
Matches: 105, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 66 0.63
51 39 0.37
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
Found at i:178551854 original size:100 final size:100
Alignment explanation
Indices: 178551675--178551856 Score: 310
Period size: 100 Copynumber: 1.8 Consensus size: 100
178551665 TATTGTGAGG
*
178551675 TCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
* *
178551740 AAGTGTAGGCTACTATGTGTATCGGAAAACTTTGA
66 AAGTGCAGGATACTATGTGTATCGGAAAACTTTGA
* * *
178551775 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTTTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
178551840 AAGTGCAGGATACTATG
66 AAGTGCAGGATACTATG
178551857 CGTACCAGAT
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 76 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGATACTATGTGTATCGGAAAACTTTGA
Found at i:178553449 original size:14 final size:13
Alignment explanation
Indices: 178553425--178553458 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
178553415 TTTAGAAAAG
178553425 TATGAATAAAAATT
1 TATG-ATAAAAATT
178553439 TATGATAAAAATT
1 TATGATAAAAATT
178553452 TATGATA
1 TATGATA
178553459 TATATAAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (13 bp):
TATGATAAAAATT
Found at i:178555332 original size:68 final size:70
Alignment explanation
Indices: 178555260--178555457 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
178555250 ACACCCTGTA
* * * *
178555260 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
178555322 ATAAAT
65 ATAAAT
*
178555328 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
178555393 ATAAAT
65 ATAAAT
*
178555399 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
178555458 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:178555371 original size:41 final size:41
Alignment explanation
Indices: 178555326--178555443 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
178555316 TGAAAGATAA
178555326 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
178555367 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
178555397 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
178555438 ATGTAG
1 ATGTAG
178555444 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:178555383 original size:71 final size:71
Alignment explanation
Indices: 178555294--178555457 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
178555284 GAGATGTATC
178555294 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
178555359 AGGACA
66 AGGACA
178555365 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
178555430 AGGACA
66 AGGACA
178555436 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
178555458 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:178562900 original size:68 final size:70
Alignment explanation
Indices: 178562828--178563025 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
178562818 ACACCCTGTA
* * * *
178562828 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
178562890 ATAAAT
65 ATAAAT
*
178562896 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
178562961 ATAAAT
65 ATAAAT
*
178562967 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
178563026 AGACTAAATC
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:178562939 original size:41 final size:41
Alignment explanation
Indices: 178562894--178563011 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
178562884 TGAAAGATAA
178562894 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
178562935 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
178562965 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
178563006 ATGTAG
1 ATGTAG
178563012 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:178562951 original size:71 final size:71
Alignment explanation
Indices: 178562862--178563025 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
178562852 GAGATGTATC
178562862 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
178562927 AGGACA
66 AGGACA
178562933 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
178562998 AGGACA
66 AGGACA
178563004 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
178563026 AGACTAAATC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:178566255 original size:40 final size:40
Alignment explanation
Indices: 178566198--178566381 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
178566188 TTCGAATGAT
* * * *
178566198 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
178566238 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
178566278 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
178566318 TCCGGGTTAAGTCCCGAAGGCATTTGT--GAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
178566357 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
178566382 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
38 30 0.23
39 3 0.02
40 89 0.68
41 8 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:178566388 original size:78 final size:78
Alignment explanation
Indices: 178566251--178566404 Score: 172
Period size: 78 Copynumber: 2.0 Consensus size: 78
178566241 GGACTAAGAT
* **
178566251 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGT-CGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
178566315 AAATCCGGGTTAAGTC
64 AAATCC-GGTTAAGTC
* * *
178566331 CCGAAGGCATTTGT-GAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCT
*
178566393 ATATCCGGTTAA
64 AAATCCGGTTAA
178566405 ACTCCGAAGG
Statistics
Matches: 64, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
77 9 0.14
78 39 0.61
79 2 0.03
80 14 0.22
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (78 bp):
CCGAAGGCATTTGTCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAA
ATCCGGTTAAGTC
Found at i:178574305 original size:40 final size:40
Alignment explanation
Indices: 178574248--178574433 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
178574238 TCGAATGATG
* * * *
178574248 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
178574288 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
178574328 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
178574368 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
178574409 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
178574434 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:178574440 original size:80 final size:79
Alignment explanation
Indices: 178574301--178574456 Score: 192
Period size: 80 Copynumber: 2.0 Consensus size: 79
178574291 GGACTAAGAT
* **
178574301 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
178574365 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* * *
178574381 CCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGAGTAGC
1 CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGC
*
178574444 TATATCCGGTTAA
64 TAAATCCGGTTAA
178574457 ACTCCGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
79 9 0.14
80 55 0.83
81 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:178578076 original size:26 final size:27
Alignment explanation
Indices: 178578031--178578081 Score: 95
Period size: 26 Copynumber: 1.9 Consensus size: 27
178578021 GCGTAGATCA
178578031 CGAAATTACCCCTAAAGAGCAAAATAT
1 CGAAATTACCCCTAAAGAGCAAAATAT
178578058 CGAAATTA-CCCTAAAGAGCAAAAT
1 CGAAATTACCCCTAAAGAGCAAAAT
178578082 TACCGATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.49, C:0.22, G:0.12, T:0.18
Consensus pattern (27 bp):
CGAAATTACCCCTAAAGAGCAAAATAT
Found at i:178578093 original size:26 final size:26
Alignment explanation
Indices: 178578031--178578096 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 26
178578021 GCGTAGATCA
*
178578031 CGAAATTACCCCTAAAGAGCAAAATAT
1 CGAAATTA-CCCTAAAGAGCAAAATAC
178578058 CGAAATTACCCTAAAGAGCAAAATTAC
1 CGAAATTACCCTAAAGAGCAAAA-TAC
*
178578085 CGATA-TACCCTA
1 CGAAATTACCCTA
178578097 GGGTTTTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 22 0.61
27 14 0.39
ACGTcount: A:0.45, C:0.24, G:0.11, T:0.20
Consensus pattern (26 bp):
CGAAATTACCCTAAAGAGCAAAATAC
Found at i:178580734 original size:48 final size:48
Alignment explanation
Indices: 178580661--178580849 Score: 279
Period size: 48 Copynumber: 3.9 Consensus size: 48
178580651 GACAATTGGG
178580661 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * *
178580709 TGATATGTGTGCTAGTGTAAAACCATGTCTGAGACATGGAATTGGCAT
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * *
178580757 TGATATGTATGCTAGTGTAATACCATGTCTGGGACATGGCATCGGCCT
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * *
178580805 CGACATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG
178580850 TAATTTACCC
Statistics
Matches: 125, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 125 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (48 bp):
TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
Found at i:178582350 original size:49 final size:49
Alignment explanation
Indices: 178582297--178582471 Score: 244
Period size: 49 Copynumber: 3.5 Consensus size: 49
178582287 CTGGTACGCA
178582297 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACACG
* * * * * *
178582346 TAGTAGCCTGTACTTAGTACTACACACGTGATCGAAGTTA-TCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATTC-GGTACACG
* *
178582397 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACACG
178582446 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
178582472 CGTGACCTCA
Statistics
Matches: 108, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
49 62 0.57
50 9 0.08
51 37 0.34
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACACG
Found at i:178582406 original size:51 final size:48
Alignment explanation
Indices: 178582284--178582478 Score: 237
Period size: 49 Copynumber: 3.9 Consensus size: 48
178582274 TAGCCAAAGC
* *
178582284 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATC-GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
178582333 TATTCGGTACACGTAGTAGCCTGTACTTAGTACTACACACGTGATCGAAGT
1 TA-TCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* *
178582384 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATC-GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
178582433 AATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAT-CGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
178582479 TCACAATAGA
Statistics
Matches: 124, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
49 76 0.61
50 11 0.09
51 37 0.30
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (48 bp):
TATCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:178582462 original size:100 final size:100
Alignment explanation
Indices: 178582284--178582476 Score: 350
Period size: 100 Copynumber: 1.9 Consensus size: 100
178582274 TAGCCAAAGC
* * *
178582284 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAG
*
178582349 TAGCCTGTACTTAGTACTACACACGTGATCGAAGT
66 TAGCCTGCACTTAGTACTACACACGTGATCGAAGT
178582384 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAG
178582449 TAGCCTGCACTTAGTACTACACACGTGA
66 TAGCCTGCACTTAGTACTACACACGTGA
178582477 CCTCACAATA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 89 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.26
Consensus pattern (100 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAG
TAGCCTGCACTTAGTACTACACACGTGATCGAAGT
Found at i:178587835 original size:49 final size:49
Alignment explanation
Indices: 178587758--178588002 Score: 283
Period size: 49 Copynumber: 4.9 Consensus size: 49
178587748 TAGCCAAAGC
* * *
178587758 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
178587807 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * * *
178587857 CATCTGATACATGTCGTAGCCTGCACTTAGTACTACACACGTGATCAAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * * *
178587908 TATCAGGTACGCATAGTAGCCTGCATTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
178587957 AATCTGGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
178588003 TCACAATAGA
Statistics
Matches: 161, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 80 0.50
50 46 0.29
51 35 0.22
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:178587940 original size:101 final size:98
Alignment explanation
Indices: 178587771--178588001 Score: 300
Period size: 100 Copynumber: 2.3 Consensus size: 98
178587761 CTGGTACGCA
* * * * *
178587771 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATCAGGTACACATAGTAGCCTGCACTTA
* * *
178587836 GTACTACACACGTGACCTAACCATCTGATACATG
66 GTACTACACACGCGACC-AACAATCTGATACACG
* * *
178587870 TCGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCAGGTACGCATAGTAGCCTGCATT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CAAA-TTATCAGGTACACATAGTAGCCTGCACT
* * *
178587935 TAGTACTACACATGCGACCAATAATCTGGTACACG
64 TAGTACTACACACGCGACCAACAATCTGATACACG
*
178587970 TAGTAGCTTGCACTTAGTACTACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC
178588002 CTCACAATAG
Statistics
Matches: 114, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
99 29 0.25
100 44 0.39
101 41 0.36
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACAATCTGATACACG
Found at i:178591247 original size:92 final size:95
Alignment explanation
Indices: 178591087--178591275 Score: 339
Period size: 92 Copynumber: 2.0 Consensus size: 95
178591077 TACCATTAGG
178591087 GTATTTGATGAATTGTCTTGCACACCTGAGGAGTGCATGAAGTGTGTTGTGTCACTCCTGCGAGA
1 GTATTTGATGAATTGTCTTGCACACCTGAGGAGTGCATGAAGTGTGTTGTGTCACTCCTGCGAGA
178591152 CTCGGCCCACCAATAGTGGAACACCCTTGT
66 CTCGGCCCACCAATAGTGGAACACCCTTGT
*
178591182 GTATTTGATGAATTGTCTTGCACACCTGA-G-G-GCATGAAGTGTGTTGTGTCACTCCTGCGGGA
1 GTATTTGATGAATTGTCTTGCACACCTGAGGAGTGCATGAAGTGTGTTGTGTCACTCCTGCGAGA
*
178591244 CTCGGCCCACCAATAGTGGAACACTCTTGT
66 CTCGGCCCACCAATAGTGGAACACCCTTGT
178591274 GT
1 GT
178591276 TGGTTGTACC
Statistics
Matches: 92, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
92 61 0.66
93 1 0.01
94 1 0.01
95 29 0.32
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (95 bp):
GTATTTGATGAATTGTCTTGCACACCTGAGGAGTGCATGAAGTGTGTTGTGTCACTCCTGCGAGA
CTCGGCCCACCAATAGTGGAACACCCTTGT
Found at i:178598089 original size:64 final size:64
Alignment explanation
Indices: 178598008--178598192 Score: 187
Period size: 64 Copynumber: 2.8 Consensus size: 64
178597998 AGACATTATG
* *
178598008 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
178598072 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGTAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAG-AGAGCTACGAGA
178598137 TAA
62 TAA
* * * *
178598140 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
178598193 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
63 6 0.06
64 34 0.35
65 5 0.05
66 6 0.06
67 31 0.32
68 14 0.14
69 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:178598170 original size:67 final size:66
Alignment explanation
Indices: 178598041--178598170 Score: 172
Period size: 67 Copynumber: 1.9 Consensus size: 66
178598031 TACTATGTGT
* * * *
178598041 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAA
1 ACACCATGTAGACAAGAGAGCTACGAGATAAATG-AGCTAGGTCACATGCGTGGTACCAAGTGAA
178598106 GG
65 GG
* *
178598108 ACACCATGTAGACAAGTAGAGCTACGAGATAAACTG-GCTAGGTCACATGGGTGGTACTAAGTG
1 ACACCATGTAGACAAG-AGAGCTACGAGATAAA-TGAGCTAGGTCACATGCGTGGTACCAAGTG
178598171 TTCACCATGT
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
67 39 0.71
68 14 0.25
69 2 0.04
ACGTcount: A:0.32, C:0.18, G:0.30, T:0.21
Consensus pattern (66 bp):
ACACCATGTAGACAAGAGAGCTACGAGATAAATGAGCTAGGTCACATGCGTGGTACCAAGTGAAG
G
Found at i:178603789 original size:40 final size:40
Alignment explanation
Indices: 178603690--178603870 Score: 186
Period size: 40 Copynumber: 4.5 Consensus size: 40
178603680 TTCGAATGAT
* * *
178603690 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* * *
178603731 ATCCGGG-TCAATTTCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
178603771 AACCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * * * *
178603811 ATCCGGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
178603852 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGCTAAGTCCCGAAG
178603871 ACAATCGAGC
Statistics
Matches: 116, Mismatches: 21, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
40 88 0.76
41 28 0.24
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:178603855 original size:80 final size:81
Alignment explanation
Indices: 178603692--178603870 Score: 218
Period size: 80 Copynumber: 2.2 Consensus size: 81
178603682 CGAATGATAT
* * * *
178603692 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTTCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
178603757 GTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAA
* * *
178603773 CCGGGTTAAGTCCCGAAGGCATTTATGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* * *
178603836 TGTGTGAATCACTATAA
65 TGTGCGAATCACCAAAA
*
178603853 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
178603871 ACAATCGAGC
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.01
80 57 0.69
81 25 0.30
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAA
Found at i:178603883 original size:80 final size:80
Alignment explanation
Indices: 178603726--178603910 Score: 178
Period size: 80 Copynumber: 2.3 Consensus size: 80
178603716 GTGCTAAGTG
* * * * *
178603726 ACTAAATCCGGGTCAATTTCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
* **
178603791 GCATTTATGCGAGTT
66 ACATCGATGCGAGTT
* * * *
178603806 ACTAAATCCGGG-CTAATTCCCGAAGGCAATTGTGTGAATCACTATAACCGGGCTATGTCCCGAA
1 ACTAAATCCGGGTC-AATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAA
*
178603870 GACAATCGA-GCGAGTC
65 GAC-ATCGATGCGAGTT
* * * *
178603886 GCTATATCCGGTTAAATT-CCGAAGG
1 ACTAAATCCGGGTCAATTCCCGAAGG
178603911 TACGTGATTC
Statistics
Matches: 85, Mismatches: 17, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
79 8 0.09
80 74 0.87
81 3 0.04
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (80 bp):
ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
ACATCGATGCGAGTT
Found at i:178605847 original size:40 final size:40
Alignment explanation
Indices: 178605798--178606005 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
178605788 TCTTCGGAAT
* * *
178605798 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
178605837 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
178605877 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
178605917 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
178605957 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
178605997 TTAGCCCGG
1 TTAGCCCGG
178606006 GTATCATTCA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 3 0.02
40 142 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:178613931 original size:40 final size:40
Alignment explanation
Indices: 178613882--178614088 Score: 249
Period size: 40 Copynumber: 5.2 Consensus size: 40
178613872 TCTTCGGAAT
* * *
178613882 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
178613921 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
178613961 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
178614001 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
178614041 TTAGCCCGGATAT-ATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
178614080 TTAGCCCGG
1 TTAGCCCGG
178614089 GTATCATTCA
Statistics
Matches: 145, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
39 38 0.26
40 106 0.73
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:178622988 original size:40 final size:40
Alignment explanation
Indices: 178622863--178623069 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
178622853 CAATTGAATG
* * ** * **
178622863 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * *
178622903 ATATCCGGGTTAAGACCC-AAGGCAATT-GTGCTAG-TGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
*
178622942 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * *
178622982 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * *
178623022 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
178623062 ATATCCGG
1 ATATCCGG
178623070 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 20, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
39 30 0.21
40 110 0.77
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
Found at i:178624556 original size:29 final size:29
Alignment explanation
Indices: 178624514--178624629 Score: 144
Period size: 29 Copynumber: 4.0 Consensus size: 29
178624504 GCAAGCATGA
*
178624514 ATATGAATGTGATTTGGGCCTGATGGGCC
1 ATATAAATGTGATTTGGGCCTGATGGGCC
178624543 ATATAAATGTGATTTGGGCCTGATGGGCC
1 ATATAAATGTGATTTGGGCCTGATGGGCC
** * * *
178624572 ATATAAATGCAAATTGGGCCTAATCGGCC
1 ATATAAATGTGATTTGGGCCTGATGGGCC
* * *
178624601 ATACAATTGTGA-TTGGGCCTGGTGGGCC
1 ATATAAATGTGATTTGGGCCTGATGGGCC
178624629 A
1 A
178624630 GATATAGGTA
Statistics
Matches: 74, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 14 0.19
29 60 0.81
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTGATGGGCC
Found at i:178630762 original size:44 final size:43
Alignment explanation
Indices: 178630703--178630851 Score: 148
Period size: 43 Copynumber: 3.4 Consensus size: 43
178630693 TAGCTGAGTA
* * * *
178630703 AATGACACTATGTGTGCGATACCGA-TATAAG-TTCAGTTTAATGT
1 AATGGCACTAAGTGTGCGATACCAATTAT-AGCTTCAG-CTAAT-T
178630747 AATGGCACTAAGTGTGCGATA-CAATTATAGCTTCAGCTAATT
1 AATGGCACTAAGTGTGCGATACCAATTATAGCTTCAGCTAATT
*
178630789 ATTTGGCACTAAGTGTGCGATA-CAATTATAGCTTCGAAG--AATT
1 A-ATGGCACTAAGTGTGCGATACCAATTATAGCTTC--AGCTAATT
178630832 AATTGGCACTAAGTGTGCGA
1 AA-TGGCACTAAGTGTGCGA
178630852 GTTCGTTGAA
Statistics
Matches: 93, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
42 2 0.02
43 62 0.67
44 27 0.29
45 2 0.02
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (43 bp):
AATGGCACTAAGTGTGCGATACCAATTATAGCTTCAGCTAATT
Found at i:178630807 original size:43 final size:42
Alignment explanation
Indices: 178630749--178630851 Score: 163
Period size: 43 Copynumber: 2.4 Consensus size: 42
178630739 TTTAATGTAA
*
178630749 TGGCACTAAGTGTGCGATACAATTATAGCTTC-AGCTAATTATT
1 TGGCACTAAGTGTGCGATACAATTATAGCTTCAAG--AATTAAT
178630792 TGGCACTAAGTGTGCGATACAATTATAGCTTCGAAGAATTAAT
1 TGGCACTAAGTGTGCGATACAATTATAGCTTC-AAGAATTAAT
178630835 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
178630852 GTTCGTTGAA
Statistics
Matches: 57, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
43 55 0.96
45 2 0.04
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (42 bp):
TGGCACTAAGTGTGCGATACAATTATAGCTTCAAGAATTAAT
Found at i:178635476 original size:46 final size:48
Alignment explanation
Indices: 178635372--178635690 Score: 282
Period size: 46 Copynumber: 6.7 Consensus size: 48
178635362 TGGGTTATTA
* * * *
178635372 TAAGCCAATGTAAGACCGTGTCTGGGACATGGCATCGGCATTGAGATG
1 TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATG
* * *
178635420 -AGAGCTAGTGTAAGA-TATGTCTGGGACAT-GCATCGGCCTCGAGACG
1 TA-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATG
* *
178635466 TAAGCCAGTGTAATA-AATGTCTGGGACAT-GCATCGG-CTACGAGATG
1 TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATG
** * * * *
178635512 T--GTAAGTGTAAGAGCATGTCTGGGACATGGCATCGACAC-AGATATG
1 TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGATG
* * *
178635558 TGAGAGCTAGTGTAAGACCATATCTGGGACATGGCGTCGGCCTCGATGATG
1 T-A-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GATG
* ** * *
178635609 -ATAGTCAGTGTAAGACCATGTCTGGGACATGGCATC-AACTTGAGATA
1 TA-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATG
*
178635656 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 TAAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
178635691 TGACATTTTA
Statistics
Matches: 220, Mismatches: 37, Indels: 29
0.77 0.13 0.10
Matches are distributed among these distances:
44 9 0.04
45 15 0.07
46 64 0.29
47 49 0.22
48 16 0.07
49 32 0.15
50 32 0.15
51 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATG
Found at i:178639385 original size:51 final size:51
Alignment explanation
Indices: 178639330--178639513 Score: 271
Period size: 51 Copynumber: 3.6 Consensus size: 51
178639320 AACTATCTGG
*
178639330 TACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGT
1 TACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGA
* * * *
178639381 TACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CTATCTGA
1 TACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGA
* * *
178639431 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGG
1 TACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGA
* *
178639482 TACGCATTGTAGCTTGCACTTAGTACTACACA
1 TACGCATAGTAGCCTGCACTTAGTACTACACA
178639514 TGCAACCTAG
Statistics
Matches: 116, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
50 43 0.37
51 73 0.63
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (51 bp):
TACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGA
Found at i:178639500 original size:101 final size:101
Alignment explanation
Indices: 178639320--178639513 Score: 334
Period size: 101 Copynumber: 1.9 Consensus size: 101
178639310 TATGTAGCCA
* * *
178639320 AACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGTTACG
1 AACTATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACG
178639385 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
66 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
*
178639421 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACG
1 AACTATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACG
* *
178639486 CATTGTAGCTTGCACTTAGTACTACACA
66 CATAGTAGCCTGCACTTAGTACTACACA
178639514 TGCAACCTAG
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
101 87 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (101 bp):
AACTATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACG
CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
Found at i:178640361 original size:30 final size:30
Alignment explanation
Indices: 178640327--178640387 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
178640317 TCTTTAACTC
178640327 AAACTTTGGCAAATTTACAATTTTGCCCCT
1 AAACTTTGGCAAATTTACAATTTTGCCCCT
* * * *
178640357 AAACTTTTGTATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAATTTACAATTTTGCCCCT
178640387 A
1 A
178640388 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (30 bp):
AAACTTTGGCAAATTTACAATTTTGCCCCT
Found at i:178643396 original size:40 final size:40
Alignment explanation
Indices: 178643341--178643570 Score: 349
Period size: 40 Copynumber: 5.8 Consensus size: 40
178643331 GATGATAATA
*
178643341 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
*
178643381 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
*
178643421 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
* *
178643461 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCC
*
178643501 GGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTAAT-TCC
*
178643541 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
178643571 AGCTATATCC
Statistics
Matches: 181, Mismatches: 7, Indels: 5
0.94 0.04 0.03
Matches are distributed among these distances:
39 4 0.02
40 175 0.97
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
Found at i:178643577 original size:40 final size:39
Alignment explanation
Indices: 178643341--178643596 Score: 340
Period size: 40 Copynumber: 6.4 Consensus size: 39
178643331 GATGATAATA
*
178643341 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTAATTCC
*
178643381 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTAATTCC
178643421 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATTCC
*
178643461 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT-TCC
*
178643501 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTAAT-TCC
*
178643541 GGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTAAT-TCC
* *
178643581 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
178643597 TACTTGGTTT
Statistics
Matches: 204, Mismatches: 8, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
39 19 0.09
40 183 0.90
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAATTCC
Found at i:178649232 original size:39 final size:40
Alignment explanation
Indices: 178649127--178649352 Score: 315
Period size: 40 Copynumber: 5.8 Consensus size: 40
178649117 CGGATGATAA
*
178649127 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTC
*
178649167 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTC
*
178649207 CGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTC
*
178649246 C-GGCTAAGT--CGAAGGCATTTGTGCGAGTTACT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TC
*
178649283 CGGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTAAT-TC
*
178649323 C-GGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
178649353 AGCTATATCC
Statistics
Matches: 176, Mismatches: 5, Indels: 12
0.91 0.03 0.06
Matches are distributed among these distances:
36 2 0.01
37 26 0.15
38 18 0.10
39 53 0.30
40 75 0.43
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTC
Found at i:178649364 original size:116 final size:117
Alignment explanation
Indices: 178649129--178649352 Score: 323
Period size: 116 Copynumber: 1.9 Consensus size: 117
178649119 GATGATAACG
*
178649129 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGT-CCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
* * *
178649194 TAGTGACTAATTCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAATTCC
65 AACTGACTAATTCCGGGCTAAGTCCGAAGGCATTTGAGCGAGTTACTAATTCC
*
178649247 GGCTAAGT-CGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGC
178649310 GAACT-ACT-ATATCC-GGCTAAGTCCCGAAGGCATTTGAGCGAGT
65 -AACTGACTAAT-TCCGGGCTAAGT-CCGAAGGCATTTGAGCGAGT
178649353 AGCTATATCC
Statistics
Matches: 97, Mismatches: 5, Indels: 10
0.87 0.04 0.09
Matches are distributed among these distances:
115 12 0.12
116 75 0.77
117 2 0.02
118 8 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (117 bp):
GGCTAAGTCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCA
ACTGACTAATTCCGGGCTAAGTCCGAAGGCATTTGAGCGAGTTACTAATTCC
Found at i:178653056 original size:64 final size:64
Alignment explanation
Indices: 178652978--178653136 Score: 167
Period size: 68 Copynumber: 2.4 Consensus size: 64
178652968 ACTTAGTACT
* * * *
178652978 ACACATGCAACCTAGCTACATATATCCCGTAGCTCTCTTGT-CTACATGGTGTACACATAGTATC
1 ACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTAC-ACATGATGTACACATAGCACC
* ** *
178653042 ACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTACACTTAGC
1 ACACATGCGACCTAGCTACAT-AT-A--TCCCGTAGCTCTCTTGTACACATGATGTACACATAGC
178653107 ACC
62 ACC
* *
178653110 ATACATGTGACCTAGCTACATACTATC
1 ACACATGCGACCTAGCTACATA-TATC
178653137 TGTATTATCC
Statistics
Matches: 78, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
64 19 0.24
65 4 0.05
66 1 0.01
67 2 0.03
68 51 0.65
69 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (64 bp):
ACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTACACATGATGTACACATAGCACC
Found at i:178653833 original size:30 final size:30
Alignment explanation
Indices: 178653797--178653857 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
178653787 TCCTTAACTC
178653797 AAACTTTGGAAAATTTACAATTTTTCCCCT
1 AAACTTTGGAAAATTTACAATTTTTCCCCT
* * * *
178653827 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTGGAAAATTTACAATTTTTCCCCT
178653857 A
1 A
178653858 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.43
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTTTTCCCCT
Found at i:178658150 original size:40 final size:39
Alignment explanation
Indices: 178658000--178658152 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
178657990 GAATGTTCGA
*
178658000 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
178658039 GTGATATCCGGGCTAAGCCCAAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
178658078 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
178658117 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
178658153 GGTTACCATA
Statistics
Matches: 104, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 87 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Done.