Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 575 of 770
Found at i:179308302 original size:28 final size:28
Alignment explanation
Indices: 179308251--179308304 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
179308241 CTATGTACAA
** *
179308251 CACTTAGTGTGTGAGATATCGAGTATAG
1 CACTTAGTGTGCAAGACATCGAGTATAG
*
179308279 CACTTAGTGTGCAAGACATTGAGTAT
1 CACTTAGTGTGCAAGACATCGAGTAT
179308305 TCAACAACAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.31
Consensus pattern (28 bp):
CACTTAGTGTGCAAGACATCGAGTATAG
Found at i:179314172 original size:40 final size:40
Alignment explanation
Indices: 179314089--179314307 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
179314079 ACCCAAGTAT
** * *
179314089 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
179314127 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
179314167 CTTCGGGACTTAGCCCGGATATAGTCGC-AGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
179314206 CTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
179314246 CTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAATGC
*
179314287 C-TCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
179314308 CATTCGAATA
Statistics
Matches: 150, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 48 0.32
40 79 0.53
41 11 0.07
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:179314222 original size:79 final size:80
Alignment explanation
Indices: 179314089--179314307 Score: 243
Period size: 79 Copynumber: 2.8 Consensus size: 80
179314079 ACCCAAGTAT
** * * *
179314089 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGG
1 CTTC-GGATCTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG
* *
179314151 TCACTAGCATAAATGC
65 TAACTAGCACAAATGC
* * * *
179314167 CTTCGGGA-CTTAGCCCGGATATAGTCGC-AGCACAAATGCCTTCGGGTTTTGGCCCGGATATAG
1 CTTC-GGATCTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG
*
179314230 TAACTCGCACAAATGC
65 TAACTAGCACAAATGC
* *
179314246 CTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCC-TCGGGACTTAGCCCGGATAT
1 CTTCGGATCTTAGCCCGGATATAGTCAC-TAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
179314308 CATTCGAATA
Statistics
Matches: 118, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
78 19 0.16
79 71 0.60
80 17 0.14
81 11 0.09
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGT
AACTAGCACAAATGC
Found at i:179322198 original size:40 final size:40
Alignment explanation
Indices: 179322151--179322335 Score: 253
Period size: 40 Copynumber: 4.6 Consensus size: 40
179322141 CTCGCACAAG
* *
179322151 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
179322191 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
179322231 GCCTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
179322271 GCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAAT
*
179322312 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
179322336 CATTCGAATA
Statistics
Matches: 124, Mismatches: 20, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
40 95 0.77
41 29 0.23
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:179322249 original size:80 final size:78
Alignment explanation
Indices: 179322117--179322335 Score: 255
Period size: 80 Copynumber: 2.8 Consensus size: 78
179322107 ACCCAAGTAT
* * * * * *
179322117 CTTCGGGATTTAGCCGGATATA-ACCTCGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGTCA
1 CTTCGGGACTTAGCCGGATATAGTCCTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGTAA
*
179322180 CTAGCATAAATGC
66 CTAGCACAAATGC
* * *
179322193 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTTTTGGCCCGGATATAGT
1 CTTCGGGACTTAG-CCGGATATAGTC-CTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGT
*
179322258 AACTCGCACAAATGC
64 AACTAGCACAAATGC
*
179322273 CTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGA-CTTAG-CCGGATATAGTC-C-TAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
179322336 CATTCGAATA
Statistics
Matches: 121, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
76 12 0.10
77 9 0.07
78 1 0.01
79 9 0.07
80 60 0.50
81 30 0.25
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (78 bp):
CTTCGGGACTTAGCCGGATATAGTCCTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGTAA
CTAGCACAAATGC
Found at i:179326892 original size:40 final size:40
Alignment explanation
Indices: 179326847--179327014 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
179326837 CGGAATATAA
179326847 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
179326887 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
179326927 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
179326967 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
179327007 CCGGATAT
1 CCGGATAT
179327015 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:179326997 original size:80 final size:80
Alignment explanation
Indices: 179326863--179327012 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
179326853 ATAACCACGT
* *
179326863 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
179326928 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
179326943 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
179327006 CCCGGAT
64 CCCGGAT
179327013 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:179334872 original size:40 final size:40
Alignment explanation
Indices: 179334827--179334915 Score: 119
Period size: 40 Copynumber: 2.2 Consensus size: 40
179334817 CGGAATATAA
*
179334827 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAAC
* * *
179334867 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAAC
179334907 CC-GATATAA
1 CCGGATATAA
179334916 TTTCCAGCAT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
39 6 0.14
40 36 0.86
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:179340055 original size:15 final size:15
Alignment explanation
Indices: 179340015--179340069 Score: 60
Period size: 15 Copynumber: 3.6 Consensus size: 15
179340005 ATGGTGTCTT
179340015 TTAATT-AAGTTAAG
1 TTAATTAAAGTTAAG
*
179340029 TGGTAGTTAAAGCTTAAG
1 T--TAATTAAAG-TTAAG
179340047 -TAATTAAAGTTAAG
1 TTAATTAAAGTTAAG
179340061 TTAATTAAA
1 TTAATTAAA
179340070 CTAGTTTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
14 6 0.18
15 16 0.47
16 4 0.12
17 3 0.09
18 5 0.15
ACGTcount: A:0.44, C:0.02, G:0.16, T:0.38
Consensus pattern (15 bp):
TTAATTAAAGTTAAG
Found at i:179345127 original size:44 final size:44
Alignment explanation
Indices: 179345077--179345166 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
179345067 GGGCTTCAGT
179345077 TACTTATACACCAAGTACTTAACATAATGAGATAAAACTAAATA
1 TACTTATACACCAAGTACTTAACATAATGAGATAAAACTAAATA
179345121 TACTTATACACCAAGTACTTAACATAATGAGATAAAACTAAATA
1 TACTTATACACCAAGTACTTAACATAATGAGATAAAACTAAATA
179345165 TA
1 TA
179345167 AAACTTGACT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.50, C:0.16, G:0.07, T:0.28
Consensus pattern (44 bp):
TACTTATACACCAAGTACTTAACATAATGAGATAAAACTAAATA
Found at i:179346797 original size:41 final size:35
Alignment explanation
Indices: 179346715--179346789 Score: 123
Period size: 35 Copynumber: 2.1 Consensus size: 35
179346705 TCATAATCAG
* *
179346715 ACAGATACATATTCGGGCCTAAGCCCATCACAGAT
1 ACAGATGCAGATTCGGGCCTAAGCCCATCACAGAT
*
179346750 ACAGATGCAGATTCGGGCCTAAGCCCATCTCAGAT
1 ACAGATGCAGATTCGGGCCTAAGCCCATCACAGAT
179346785 ACAGA
1 ACAGA
179346790 CATAGATGTG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.19
Consensus pattern (35 bp):
ACAGATGCAGATTCGGGCCTAAGCCCATCACAGAT
Found at i:179347292 original size:18 final size:18
Alignment explanation
Indices: 179347265--179347332 Score: 127
Period size: 18 Copynumber: 3.7 Consensus size: 18
179347255 TTGGATAAAT
179347265 GGGCCTACACGCTCGTGTG
1 GGGCC-ACACGCTCGTGTG
179347284 GGGCCACACGCTCGTGTG
1 GGGCCACACGCTCGTGTG
179347302 GGGCCACACGCTCGTGTG
1 GGGCCACACGCTCGTGTG
179347320 GGGCCACACGCTC
1 GGGCCACACGCTC
179347333 ATATTGGCCT
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
18 44 0.90
19 5 0.10
ACGTcount: A:0.12, C:0.35, G:0.37, T:0.16
Consensus pattern (18 bp):
GGGCCACACGCTCGTGTG
Found at i:179350519 original size:24 final size:24
Alignment explanation
Indices: 179350491--179350540 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
179350481 ATAGTTCAGG
179350491 TAAATATATAAAACTTTAA-AAAAT
1 TAAATATATAAAA-TTTAATAAAAT
* *
179350515 TAAATATTTCAAATTTAATAAAAT
1 TAAATATATAAAATTTAATAAAAT
179350539 TA
1 TA
179350541 CAAAAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 5 0.22
24 18 0.78
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (24 bp):
TAAATATATAAAATTTAATAAAAT
Found at i:179351503 original size:12 final size:12
Alignment explanation
Indices: 179351486--179351520 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
179351476 TAAAAATGGA
179351486 CACTACTTATAG
1 CACTACTTATAG
*
179351498 CACTACTCATAG
1 CACTACTTATAG
*
179351510 CACTATTTATA
1 CACTACTTATA
179351521 ATTGCCTCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.34, C:0.26, G:0.06, T:0.34
Consensus pattern (12 bp):
CACTACTTATAG
Found at i:179356180 original size:18 final size:17
Alignment explanation
Indices: 179356147--179356181 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
179356137 CAATTTGGGC
*
179356147 CGTGTGGGCCATACGGG
1 CGTGTGGGCCACACGGG
179356164 CGTGTGGGCCCACACGGG
1 CGTGTGGG-CCACACGGG
179356182 TAACCACATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.11, C:0.29, G:0.46, T:0.14
Consensus pattern (17 bp):
CGTGTGGGCCACACGGG
Found at i:179356654 original size:4 final size:4
Alignment explanation
Indices: 179356645--179356681 Score: 67
Period size: 4 Copynumber: 9.5 Consensus size: 4
179356635 AGCAAACGTG
179356645 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A-AA AG
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AG
179356682 GGAAATTTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.09
4 29 0.91
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:179366142 original size:29 final size:29
Alignment explanation
Indices: 179366109--179366182 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
179366099 GTGACGAGAT
179366109 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
179366138 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
179366167 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
179366183 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:179366198 original size:29 final size:29
Alignment explanation
Indices: 179366166--179366241 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
179366156 CTGGAAATAT
* *
179366166 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
179366195 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
179366224 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
179366242 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:179366209 original size:58 final size:58
Alignment explanation
Indices: 179366109--179366241 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
179366099 GTGACGAGAT
* * * * * *
179366109 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
179366167 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
179366225 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
179366242 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:179374008 original size:29 final size:29
Alignment explanation
Indices: 179373975--179374106 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
179373965 GTGACGAGAT
*
179373975 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
179374004 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
179374033 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
179374062 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
179374091 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
179374107 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:179378505 original size:40 final size:40
Alignment explanation
Indices: 179378468--179378663 Score: 254
Period size: 40 Copynumber: 4.9 Consensus size: 40
179378458 GGATATAGCT
* * *
179378468 ACTCGCTCAAATGCCTTCGGGACATAGTCCGATTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGATTATAGTA
* *
179378508 ACTCGCACCAATGCCTTCGGGACTTAGCCCGAATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG-ATTATAGTA
* *
179378548 ACTCACACAAATGCCTTCGGGACTTAGCCCGA-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGATTA-TAGTA
*
179378588 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GATTATAGTA
* *
179378628 ACTCGCACAAATACCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGATTAT
179378664 CATCCGAATA
Statistics
Matches: 136, Mismatches: 14, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
39 3 0.02
40 128 0.94
41 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGATTATAGTA
Found at i:179385239 original size:14 final size:13
Alignment explanation
Indices: 179385188--179385245 Score: 64
Period size: 14 Copynumber: 4.3 Consensus size: 13
179385178 GATTCAAAGA
179385188 TTAGGTTT-AGAGT
1 TTAGGTTTAAG-GT
* *
179385201 TTGAGGTTTAATGA
1 TT-AGGTTTAAGGT
179385215 TTAGGTTTAAGGT
1 TTAGGTTTAAGGT
179385228 TTAGGATTTAAGGT
1 TTAGG-TTTAAGGT
179385242 TTAG
1 TTAG
179385246 AAATTATGAC
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
13 16 0.42
14 21 0.55
15 1 0.03
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45
Consensus pattern (13 bp):
TTAGGTTTAAGGT
Found at i:179385245 original size:27 final size:26
Alignment explanation
Indices: 179385163--179385238 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 26
179385153 GCCAAGTTTA
*
179385163 AGGTTTAGGATTTAGGATTCAAAGATT
1 AGGTTTAGG-TTTAGGATTTAAAGATT
*
179385190 AGGTTTAGAGTTTGAGG-TTTAATGATT
1 AGGTTTAG-GTTT-AGGATTTAAAGATT
179385217 AGGTTTAAGGTTTAGGATTTAA
1 AGGTTT-AGGTTTAGGATTTAA
179385239 GGTTTAGAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
26 3 0.07
27 34 0.79
28 6 0.14
ACGTcount: A:0.30, C:0.01, G:0.28, T:0.41
Consensus pattern (26 bp):
AGGTTTAGGTTTAGGATTTAAAGATT
Found at i:179394077 original size:26 final size:28
Alignment explanation
Indices: 179394047--179394115 Score: 97
Period size: 26 Copynumber: 2.5 Consensus size: 28
179394037 ATAATAAGTC
*
179394047 CGCACACTTAGTGCTATA-AATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
179394073 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
179394101 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
179394116 GTACAAATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
26 17 0.46
27 4 0.11
28 16 0.43
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:179394093 original size:28 final size:27
Alignment explanation
Indices: 179394047--179394115 Score: 79
Period size: 28 Copynumber: 2.6 Consensus size: 27
179394037 ATAATAAGTC
*
179394047 CGCACACTTAGTGC-TATAAATC-AGCT
1 CGCACACTTAGTGCTTAT-AATCAAACT
* *
179394073 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCT-TATAATCAAACT
179394101 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
179394116 GTACAAATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 13 0.36
27 4 0.11
28 19 0.53
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTTATAATCAAACT
Found at i:179402152 original size:26 final size:28
Alignment explanation
Indices: 179402122--179402190 Score: 97
Period size: 26 Copynumber: 2.5 Consensus size: 28
179402112 ATAATAAGTC
*
179402122 CGCACACTTAGTGCTATA-AATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
179402148 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
179402176 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
179402191 GTACAAATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
26 17 0.46
27 4 0.11
28 16 0.43
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:179402168 original size:28 final size:27
Alignment explanation
Indices: 179402122--179402190 Score: 79
Period size: 28 Copynumber: 2.6 Consensus size: 27
179402112 ATAATAAGTC
*
179402122 CGCACACTTAGTGC-TATAAATC-AGCT
1 CGCACACTTAGTGCTTAT-AATCAAACT
* *
179402148 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCT-TATAATCAAACT
179402176 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
179402191 GTACAAATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 13 0.36
27 4 0.11
28 19 0.53
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTTATAATCAAACT
Found at i:179410219 original size:40 final size:40
Alignment explanation
Indices: 179410160--179410367 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
179410150 CAATTGAATG
* * * *
179410160 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
179410200 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
179410240 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
179410280 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
179410320 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
179410360 ATATCCGG
1 ATATCCGG
179410368 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:179410298 original size:80 final size:80
Alignment explanation
Indices: 179410161--179410367 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
179410151 AATTGAATGA
* * ** * * *
179410161 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
179410226 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
179410239 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
179410304 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
179410321 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
179410368 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:179412895 original size:40 final size:39
Alignment explanation
Indices: 179412838--179413063 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 39
179412828 TCGAATGATG
* * * *
179412838 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
179412878 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
179412918 TTCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
179412958 TTCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 -TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
** *
179412999 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
179413040 -CCGGGCTATGTCCGAAGGCATTTG
1 TCCGGACTAAGTCCGAAGGCATTTG
179413064 AACGAGTAGC
Statistics
Matches: 168, Mismatches: 13, Indels: 11
0.88 0.07 0.06
Matches are distributed among these distances:
39 14 0.08
40 107 0.64
41 47 0.28
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (39 bp):
TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:179412978 original size:81 final size:81
Alignment explanation
Indices: 179412838--179413061 Score: 280
Period size: 81 Copynumber: 2.8 Consensus size: 81
179412828 TCGAATGATG
* * *
179412838 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAT-ATCCGGACTAAGATCCGAAGGCAT
1 TCCGGACTAAGTCCCGAAGGCATTCGTGC-AAGTTACTATAATCCGGACTAAGATCCGAAGGCAT
179412901 TCGTGCGAGTTACTAAA
65 TCGTGCGAGTTACTAAA
* *
179412918 TTCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTA-AATTCCGGACTAAGATCCGAAGGCA
1 TCCGGACTAAG-TCCCGAAGGCATTCGTGCAAGTTACTATAA-TCCGGACTAAGATCCGAAGGCA
*
179412981 TTTGTGCGAGTTACTAAA
64 TTCGTGCGAGTTACTAAA
** * * *
179412999 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA-CCGGGCTATG-TCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCAAGTTACTATAATCCGGACTAAGATCCGAAGGCATT
179413062 TGAACGAGTA
Statistics
Matches: 125, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
79 12 0.10
80 34 0.27
81 77 0.62
82 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (81 bp):
TCCGGACTAAGTCCCGAAGGCATTCGTGCAAGTTACTATAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTACTAAA
Found at i:179418215 original size:40 final size:40
Alignment explanation
Indices: 179417983--179418208 Score: 282
Period size: 40 Copynumber: 5.7 Consensus size: 40
179417973 TCGAATGATG
* * * *
179417983 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
179418023 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
179418063 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
179418103 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
**
179418143 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
179418184 -CCGGGCTATG-TCCCGAAGGCATTTG
1 TCCGGACTAAGAT-CCGAAGGCATTTG
179418209 AACGAGTAGC
Statistics
Matches: 172, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
39 1 0.01
40 162 0.94
41 9 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:179421337 original size:17 final size:18
Alignment explanation
Indices: 179421315--179421348 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
179421305 TATCTTAACC
179421315 TCCCACTAA-CCACTAAA
1 TCCCACTAACCCACTAAA
179421332 TCCCACTAACCCACTAA
1 TCCCACTAACCCACTAA
179421349 CTCTCAACTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.38, C:0.44, G:0.00, T:0.18
Consensus pattern (18 bp):
TCCCACTAACCCACTAAA
Found at i:179427405 original size:30 final size:29
Alignment explanation
Indices: 179427369--179427430 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 29
179427359 CAGAAGTTTT
179427369 GGCACTAAGTGTGCGATTTAAACTAGCTTC
1 GGCACTAAGTGTGCGATTT-AACTAGCTTC
179427399 GGCACTAAGTGTGCGATTTAACTAGCTTC
1 GGCACTAAGTGTGCGATTTAACTAGCTTC
179427428 GGC
1 GGC
179427431 TATTTGAGGA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 13 0.41
30 19 0.59
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (29 bp):
GGCACTAAGTGTGCGATTTAACTAGCTTC
Found at i:179434934 original size:40 final size:40
Alignment explanation
Indices: 179434875--179435016 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
179434865 AAATTGAATG
* * *
179434875 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
179434915 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
179434955 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
179434995 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
179435017 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:179435017 original size:40 final size:39
Alignment explanation
Indices: 179434914--179435042 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
179434904 TGCTGGAAAT
* * *
179434914 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
179434954 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
179434994 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
179435034 TATATCCGG
1 TATATCCGG
179435043 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:179438302 original size:40 final size:39
Alignment explanation
Indices: 179438137--179438320 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
179438127 AAATTGAATG
* * *
179438137 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
179438177 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
179438217 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
179438257 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
179438296 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
179438321 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:179438345 original size:80 final size:81
Alignment explanation
Indices: 179438177--179438365 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
179438167 GCTGGAAATT
* * * *
179438177 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
179438242 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
179438258 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
179438321 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
179438337 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
179438366 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:179444515 original size:19 final size:19
Alignment explanation
Indices: 179444479--179444517 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
179444469 TTTTCATCAT
* *
179444479 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
179444498 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
179444517 A
1 A
179444518 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:179445000 original size:28 final size:28
Alignment explanation
Indices: 179444952--179445042 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
179444942 GTGACAGAGT
*
179444952 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
*
179444981 CACCAGAACAGATAATTTGTGGCAGAGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
179445009 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
179445037 CACCAG
1 CACCAG
179445043 GACGCTTCCT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:179445195 original size:28 final size:28
Alignment explanation
Indices: 179445151--179445211 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
179445141 TTAACCCTAA
*
179445151 GGGTATAAAGGTCATTTTGCATACATAG
1 GGGTATAAAGGTAATTTTGCATACATAG
*
179445179 GGGTATAATGGTAATTTTGCATACATAG
1 GGGTATAAAGGTAATTTTGCATACATAG
179445207 GGGTA
1 GGGTA
179445212 GTCTAGTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.33
Consensus pattern (28 bp):
GGGTATAAAGGTAATTTTGCATACATAG
Found at i:179446302 original size:12 final size:13
Alignment explanation
Indices: 179446283--179446315 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
179446273 GGGTTCAGCT
179446283 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
179446296 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
179446308 ATGGAGAA
1 ATGGAGAA
179446316 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:179453694 original size:27 final size:28
Alignment explanation
Indices: 179453638--179453707 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
179453628 AAATTTGTAC
179453638 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
179453666 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
179453693 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
179453708 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:179462296 original size:40 final size:39
Alignment explanation
Indices: 179462247--179462452 Score: 245
Period size: 39 Copynumber: 5.2 Consensus size: 39
179462237 TCTTCGGAAT
* *
179462247 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** *
179462286 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* *
179462326 TTAGCCCGGATATAACAACTCGCAGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
*
179462365 TTAGCCCGGATATAACAACTCGCACAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
* *
179462404 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCA-CAATGCCTTCGGGTC
179462444 TTAGCCCGG
1 TTAGCCCGG
179462453 GTATCATTCA
Statistics
Matches: 144, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 76 0.53
40 66 0.46
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:179462373 original size:79 final size:77
Alignment explanation
Indices: 179462247--179462452 Score: 252
Period size: 79 Copynumber: 2.6 Consensus size: 77
179462237 TCTTCGGAAT
* * * * *** *
179462247 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAA-CACTAGCA-AAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
179462311 AAATGCCTTCGGGTC
64 -AATGCCTTCGGGTC
* *
179462326 TTAGCCCGGATATAACAACTCGCAGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACA
1 TTAGCCCGGATATAAC-ACTAGCAAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACA
179462391 ATGCCTTCGGGTC
65 ATGCCTTCGGGTC
*
179462404 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGGATATAA-CACTAGCA-AAATGCCTTCGGGTCTTAGCCCGG
179462453 GTATCATTCA
Statistics
Matches: 110, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
78 35 0.32
79 60 0.55
80 15 0.14
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (77 bp):
TTAGCCCGGATATAACACTAGCAAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAA
TGCCTTCGGGTC
Found at i:179470277 original size:40 final size:40
Alignment explanation
Indices: 179470228--179470432 Score: 265
Period size: 40 Copynumber: 5.2 Consensus size: 40
179470218 TCTTCGGAAT
* *
179470228 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * * *
179470267 TTAACCCGG--ATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* *
179470305 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
179470345 TTAACCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* *
179470385 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGG-C
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
179470424 TTAGCCCGG
1 TTAGCCCGG
179470433 GTATCATTCA
Statistics
Matches: 149, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
38 32 0.21
39 13 0.09
40 104 0.70
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:179470330 original size:78 final size:78
Alignment explanation
Indices: 179470228--179470432 Score: 299
Period size: 80 Copynumber: 2.6 Consensus size: 78
179470218 TCTTCGGAAT
* * *
179470228 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGG-ATAGCAACTCGCACA
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGAATAACAACTCGCACA
179470291 AATGCCTTCGGGTC
65 AATGCCTTCGGGTC
*
179470305 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGA-ATAACAACTCGCAC
179470370 AAATGCCTTCGGGTC
64 AAATGCCTTCGGGTC
* *
179470385 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGG-CTTAGCCCGG
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGG
179470433 GTATCATTCA
Statistics
Matches: 116, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
77 5 0.04
78 39 0.34
79 9 0.08
80 62 0.53
81 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23
Consensus pattern (78 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGAATAACAACTCGCACAA
ATGCCTTCGGGTC
Found at i:179478155 original size:40 final size:40
Alignment explanation
Indices: 179478106--179478273 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 40
179478096 TCTTCGGAAT
* * *
179478106 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
179478145 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
*
179478185 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
179478225 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
179478265 TTAGCCCGG
1 TTAGCCCGG
179478274 GTATCATTCA
Statistics
Matches: 109, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 3 0.03
40 105 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:179480747 original size:27 final size:28
Alignment explanation
Indices: 179480691--179480760 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
179480681 GAATTTGTAC
179480691 AGCACTAAGTGTGCGAGCTTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATAT
179480719 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATAT
179480746 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
179480761 GGCTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTTGATTATAT
Found at i:179485005 original size:40 final size:40
Alignment explanation
Indices: 179484960--179485121 Score: 256
Period size: 40 Copynumber: 4.1 Consensus size: 40
179484950 ACTAAGATCC
* *
179484960 AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
179485000 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
179485040 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
* ** *
179485080 AAGGCATTTGTGTGAGTTGTTATATCC-GGCTAAAT-CCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
179485118 AAGG
1 AAGG
179485122 TACTTGGGTT
Statistics
Matches: 116, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
38 7 0.06
39 7 0.06
40 102 0.88
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
Found at i:179493026 original size:40 final size:40
Alignment explanation
Indices: 179492960--179493103 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
179492950 AAATTGAATG
* * *
179492960 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
179492999 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
179493039 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
*
179493079 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
179493104 TTCGTGCACG
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.19
40 69 0.81
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:179493124 original size:40 final size:40
Alignment explanation
Indices: 179492997--179493126 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
179492987 ATGCTGGAAA
* *
179492997 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
179493037 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
179493077 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
179493117 TTATATCCGG
1 TTATATCCGG
179493127 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:179498254 original size:40 final size:40
Alignment explanation
Indices: 179498206--179498410 Score: 360
Period size: 40 Copynumber: 5.2 Consensus size: 40
179498196 GGACTAAGAT
* *
179498206 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
179498246 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
179498286 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
179498326 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
179498366 CCGAAGGCATTTGTGCGAGTT-TTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
179498404 CCGAAGG
1 CCGAAGG
179498411 TACTTGGGTT
Statistics
Matches: 161, Mismatches: 4, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
38 15 0.09
39 7 0.04
40 139 0.86
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:179502082 original size:93 final size:93
Alignment explanation
Indices: 179501970--179502141 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
179501960 GCCCATAAGT
* *
179501970 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
179502035 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
179502063 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
179502128 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
179502142 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:179502137 original size:46 final size:46
Alignment explanation
Indices: 179501962--179502137 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
179501952 TGTAACCCGC
* * *
179501962 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
179502008 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
179502058 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
179502101 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
179502138 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:179504564 original size:30 final size:30
Alignment explanation
Indices: 179504520--179504608 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
179504510 CAAAGATAAC
179504520 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
179504549 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
179504579 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
179504609 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:179504568 original size:15 final size:15
Alignment explanation
Indices: 179504520--179504599 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
179504510 CAAAGATAAC
*
179504520 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
179504534 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
179504549 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
179504564 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
179504579 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
179504594 AAGAAA
1 AAGAAA
179504600 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:179504608 original size:15 final size:15
Alignment explanation
Indices: 179504531--179504608 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
179504521 AGAAAACCGA
179504531 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
179504546 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
179504560 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
179504575 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
179504591 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
179504606 ATA
1 ATA
179504609 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:179507670 original size:93 final size:93
Alignment explanation
Indices: 179507558--179507729 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
179507548 GCCCATAAGT
* *
179507558 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
179507623 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
179507651 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
179507716 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
179507730 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:179507725 original size:46 final size:46
Alignment explanation
Indices: 179507550--179507725 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
179507540 TGTAACCCGC
* * *
179507550 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
179507596 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
179507646 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
179507689 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
179507726 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:179512049 original size:55 final size:56
Alignment explanation
Indices: 179511984--179512088 Score: 142
Period size: 56 Copynumber: 1.9 Consensus size: 56
179511974 AGCATGGCTG
* *
179511984 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGTGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCAGTGCCA
* * *
179512040 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCA
179512089 TAGCCACTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
55 21 0.49
56 22 0.51
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCAGTGCCA
Found at i:179512061 original size:27 final size:27
Alignment explanation
Indices: 179512009--179512088 Score: 115
Period size: 27 Copynumber: 2.9 Consensus size: 27
179511999 GTGACAGAGT
*
179512009 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGGGC
*
179512038 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGGGC
179512065 CACCAGAACAGATAATTTGTGGCA
1 CACCAGAACAGAT-ATTTGTGGCA
179512089 TAGCCACTAG
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
27 24 0.51
28 16 0.34
29 7 0.15
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGGGC
Found at i:179512251 original size:28 final size:28
Alignment explanation
Indices: 179512204--179512271 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
179512194 AAATTAACCC
* *
179512204 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
179512232 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
179512260 TAGGGGTATAAT
1 TAGGGGTATAAT
179512272 AGTACATCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:179512531 original size:8 final size:8
Alignment explanation
Indices: 179512515--179512546 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
179512505 CCCAAAATAC
179512515 CGGCTTTT
1 CGGCTTTT
*
179512523 CGGCATTT
1 CGGCTTTT
179512531 CGGCTTTT
1 CGGCTTTT
179512539 CGGCTTTT
1 CGGCTTTT
179512547 GCCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:179519887 original size:27 final size:28
Alignment explanation
Indices: 179519835--179519904 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
179519825 GTGACAGAGT
* *
179519835 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATATTATGTGGCAGGGC
179519864 CACCAGAACAGATA-TATGTGGCAGGGC
1 CACCAGAACAGATATTATGTGGCAGGGC
179519891 CACCAGAACAGATA
1 CACCAGAACAGATA
179519905 ATTTGTCGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 25 0.64
28 7 0.18
29 7 0.18
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (28 bp):
CACCAGAACAGATATTATGTGGCAGGGC
Found at i:179520077 original size:28 final size:28
Alignment explanation
Indices: 179520030--179520096 Score: 116
Period size: 28 Copynumber: 2.4 Consensus size: 28
179520020 AAAATTAACC
*
179520030 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
179520058 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
179520086 TAGGGGTATAA
1 TAGGGGTATAA
179520097 GTACATCTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:179520374 original size:8 final size:8
Alignment explanation
Indices: 179520348--179520377 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
179520338 CCAAAATACC
179520348 GCTTTTCG
1 GCTTTTCG
*
179520356 GCATTTCG
1 GCTTTTCG
179520364 GCTTTTCG
1 GCTTTTCG
179520372 GCTTTT
1 GCTTTT
179520378 GCCGATCTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.23, G:0.23, T:0.50
Consensus pattern (8 bp):
GCTTTTCG
Found at i:179524309 original size:23 final size:24
Alignment explanation
Indices: 179524271--179524318 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
179524261 GGGATTTACA
179524271 CACACACAGTGCCTC-TAATCATT
1 CACACACAGTGCCTCTTAATCATT
*
179524294 CACACACATGTG-CTCTTATTCATT
1 CACACACA-GTGCCTCTTAATCATT
179524318 C
1 C
179524319 GTTATTACAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.27, C:0.33, G:0.08, T:0.31
Consensus pattern (24 bp):
CACACACAGTGCCTCTTAATCATT
Found at i:179524544 original size:40 final size:40
Alignment explanation
Indices: 179524495--179524686 Score: 348
Period size: 40 Copynumber: 4.8 Consensus size: 40
179524485 CCAGCATGAT
* * *
179524495 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
179524535 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
179524575 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
179524615 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
179524655 TGCTCTTCGGAACTTAGTCCGGATACATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
179524687 CTCAATTCTC
Statistics
Matches: 149, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 149 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:179527031 original size:49 final size:48
Alignment explanation
Indices: 179526801--179527164 Score: 510
Period size: 49 Copynumber: 7.6 Consensus size: 48
179526791 CCCTTCGGGA
* * * * *
179526801 CTTATCACAT-TTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
179526848 CCTATCACATA-TATGCACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
*
179526895 CTTATCACATA-TATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
179526942 CTTATCACATATGTAT--A---TCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
*
179526986 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
*
179527035 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
179527084 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
179527133 CTTATCTCATATTTATACACATTCACATTCAT
1 CTTATCACATA-TTATACACTTTCACATTCAT
179527165 TACGTAAAAT
Statistics
Matches: 294, Mismatches: 14, Indels: 16
0.91 0.04 0.05
Matches are distributed among these distances:
44 42 0.14
47 97 0.33
49 154 0.52
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34
Consensus pattern (48 bp):
CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:179527492 original size:22 final size:22
Alignment explanation
Indices: 179527464--179527536 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
179527454 TTTCACATTC
179527464 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
** * *
179527486 ATCACATATG-TATATCA--CATT
1 ATCACATCGGCCAT-T-AGGCCTT
179527507 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
179527530 ATCACAT
1 ATCACAT
179527537 ATGTATATGC
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
21 6 0.16
22 25 0.68
23 6 0.16
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:179527572 original size:49 final size:49
Alignment explanation
Indices: 179527393--179527755 Score: 573
Period size: 49 Copynumber: 7.6 Consensus size: 49
179527383 CATCTAACAC
* *
179527393 TCACAT-T-TATACACTTTCACATCCATCACATTGGCCATTAGGCCTTA
1 TCACATATGTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
179527440 TCACATA--TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATGTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
179527487 TCACATATGTAT--A---TCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATGTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
**
179527531 TCACATATGTATATGCTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATGTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
179527580 TCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATGTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
179527629 TCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATGTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
179527678 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATGTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* * *
179527727 TCTCATATTTATACACATTCACATTCATC
1 TCACATATGTATACACTTTCACATTCATC
179527756 GCGTAAAATC
Statistics
Matches: 299, Mismatches: 9, Indels: 14
0.93 0.03 0.04
Matches are distributed among these distances:
44 43 0.14
47 52 0.17
49 204 0.68
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.34
Consensus pattern (49 bp):
TCACATATGTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:179527921 original size:590 final size:587
Alignment explanation
Indices: 179526805--179527985 Score: 2186
Period size: 590 Copynumber: 2.0 Consensus size: 587
179526795 TCGGGACTTA
* * *
179526805 TCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATGCACTTTC
1 TCACATTTATACACTTTCACATCCATCACATTGGCCACTAGGCCCTATCACATATATACACTTTC
* * *
179526870 ACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCC
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-ACTATCACATTCATCACATCGGCC
179526935 ATTAGGCCTTATCACATATGTATATCACATTCATCACATCGGCCATTAGGCCTTATCACATATGT
130 ATTAGGCCTTATCACATATGTATATCACATTCATCACATCGGCCATTAGGCCTTATCACATATGT
179527000 ATACGCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTATACGCTTTCACATTC
195 ATACGCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTATACGCTTTCACATTC
179527065 ATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
260 ATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
*
179527130 GGCCTTATCTCATATTTATACACATTCACATTCATTACGTAAAATCTTAAATCAAAATATAAATT
325 GGCCTTATCTCATATTTATACACATTCACATTCATCACGTAAAATCTTAAATCAAAATATAAATT
179527195 TTCATGTATTCACATCACAATTATTCAAATATACTTCATATACCACATATACTATCATGTACAGA
390 TTCATGTATTCACATCACAATTATTCAAATATACTTCATATACCACATATACTATCATGTACAGA
179527260 CTTGGTCTTGGCCGAATCTACATCAATCATTTTCCAATGAATAATTCAATTTCACGCCATACTAT
455 CTTGGTCTTGGCCGAATCTACATCAATCATTTTCCAATGAATAATTCAATTTCACGCCATACTAT
179527325 CATTTCATATTCGAATACTCATAAACTTACAATTTCCCAAATATTAATATCAAAGATCCATCTAA
520 CATTTCATATTCGAATACTCATAAACTTACAATTTCCCAAATATTAATATCAAAGATCCATCTAA
179527390 CAC
585 CAC
* *
179527393 TCACATTTATACACTTTCACATCCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTC
1 TCACATTTATACACTTTCACATCCATCACATTGGCCACTAGGCCCTATCACATATATACACTTTC
*
179527458 ACATTCATCACATCGGCCATTAGGCCTTATCACATATGT-A-TATCACATTCATCACATCGGCCA
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACTATCACATTCATCACATCGGCCA
179527521 TTAGGCCTTATCACATATGTATATGCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
131 TTAGGCCTTATCACATATGTATA-----TCACATTCATCACATCGGCCATTAGGCCTTATCACAT
179527586 ATGTATACGCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTATACGCTTTCAC
191 ATGTATACGCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTATACGCTTTCAC
179527651 ATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCC
256 ATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCC
*
179527716 ATTAGGCCTTATCTCATATTTATACACATTCACATTCATCGCGTAAAATCTTAAATCAAAATATA
321 ATTAGGCCTTATCTCATATTTATACACATTCACATTCATCACGTAAAATCTTAAATCAAAATATA
179527781 AATTTTCATGTATTCACATCACAATTATTCAAATATACTTCATATACCACATATACTATCATGTA
386 AATTTTCATGTATTCACATCACAATTATTCAAATATACTTCATATACCACATATACTATCATGTA
179527846 CAGACTTGGTCTTGGCCGAATCTACATCAATCATTTTCCAATGAATAATTCAATTTCACGCCATA
451 CAGACTTGGTCTTGGCCGAATCTACATCAATCATTTTCCAATGAATAATTCAATTTCACGCCATA
*
179527911 CTATCATTTCATATTCGAATACTCATAAACTTACAATTTCCCAAATTTTAATATCAAAGATCCAT
516 CTATCATTTCATATTCGAATACTCATAAACTTACAATTTCCCAAATATTAATATCAAAGATCCAT
179527976 CTAACAC
581 CTAACAC
179527983 TCA
1 TCA
179527986 TATATCATTT
Statistics
Matches: 576, Mismatches: 12, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
585 44 0.08
586 1 0.00
588 97 0.17
590 434 0.75
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.34
Consensus pattern (587 bp):
TCACATTTATACACTTTCACATCCATCACATTGGCCACTAGGCCCTATCACATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACTATCACATTCATCACATCGGCCA
TTAGGCCTTATCACATATGTATATCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTA
TACGCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTATACGCTTTCACATTCA
TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
GCCTTATCTCATATTTATACACATTCACATTCATCACGTAAAATCTTAAATCAAAATATAAATTT
TCATGTATTCACATCACAATTATTCAAATATACTTCATATACCACATATACTATCATGTACAGAC
TTGGTCTTGGCCGAATCTACATCAATCATTTTCCAATGAATAATTCAATTTCACGCCATACTATC
ATTTCATATTCGAATACTCATAAACTTACAATTTCCCAAATATTAATATCAAAGATCCATCTAAC
AC
Found at i:179532141 original size:20 final size:21
Alignment explanation
Indices: 179532118--179532166 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
179532108 TCAGCTCCCA
*
179532118 TCAGCTCACTTGAGCTCG-AT
1 TCAGCTCACTTGAGCTAGAAT
**
179532138 TCAGCTCGTTTGAGCTAGAAT
1 TCAGCTCACTTGAGCTAGAAT
179532159 TCAGCTCA
1 TCAGCTCA
179532167 ATTCAGCTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 15 0.62
21 9 0.38
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (21 bp):
TCAGCTCACTTGAGCTAGAAT
Found at i:179532215 original size:11 final size:12
Alignment explanation
Indices: 179532196--179532228 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
179532186 CATTCTAATA
179532196 AATTAAGTTT-T
1 AATTAAGTTTAT
*
179532207 AATTCAGTTTAT
1 AATTAAGTTTAT
179532219 AATTAAGTTT
1 AATTAAGTTT
179532229 GCTACAGCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 9 0.47
12 10 0.53
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (12 bp):
AATTAAGTTTAT
Found at i:179542086 original size:40 final size:40
Alignment explanation
Indices: 179542041--179542207 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
179542031 CGGAATATAA
179542041 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
179542081 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
179542121 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
179542161 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
179542200 CCGGATAT
1 CCGGATAT
179542208 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:179542191 original size:80 final size:79
Alignment explanation
Indices: 179542041--179542207 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
179542031 CGGAATATAA
* *
179542041 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
179542106 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
179542121 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
179542183 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
179542200 CCGGATAT
1 CCGGATAT
179542208 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:179543056 original size:17 final size:19
Alignment explanation
Indices: 179543033--179543078 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
179543023 AAGAAGCATG
179543033 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
179543051 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
179543069 AATCATGCTC
1 AATCATGCTC
179543079 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:179545020 original size:46 final size:45
Alignment explanation
Indices: 179544970--179545142 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 45
179544960 TGGTTGAGCA
179544970 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-AATG
* * *
179545016 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA-T--G
* *
179545061 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-TAATG
* *
179545109 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
179545143 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAATG
Found at i:179545126 original size:93 final size:93
Alignment explanation
Indices: 179544967--179545137 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
179544957 GGATGGTTGA
** * *
179544967 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
179545032 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
179545060 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
179545125 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
179545138 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:179548438 original size:54 final size:54
Alignment explanation
Indices: 179548257--179548438 Score: 269
Period size: 54 Copynumber: 3.4 Consensus size: 54
179548247 ACCAAAGTAC
* * *
179548257 CCCT-GATTTACAAAATTACCGTTTTACCCCCGATTTACATAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTA
* *
179548310 CCCCCGATTTACATAATTA-TCGTTTTACCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACT-GTTTTACCCTCGATTTACAGAATTACCGTTTTA
* **
179548364 CCCTCGATTTACAAAATTACTGTTTTACCCTTGATTTACAGAATTACTATTTTA
1 CCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTA
179548418 CCCTCGATTTACAAAATTACT
1 CCCTCGATTTACAAAATTACT
179548439 AAAATACCCT
Statistics
Matches: 116, Mismatches: 10, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
53 3 0.03
54 112 0.97
55 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.39
Consensus pattern (54 bp):
CCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTA
Found at i:179548439 original size:27 final size:27
Alignment explanation
Indices: 179548257--179548438 Score: 242
Period size: 27 Copynumber: 6.8 Consensus size: 27
179548247 ACCAAAGTAC
*
179548257 CCCT-GATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
* * *
179548283 CCCCCGATTTACATAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
* *
179548310 CCCCCGATTTACATAATTA-TCGTTTTA
1 CCCTCGATTTACAAAATTACT-GTTTTA
* *
179548337 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
179548364 CCCTCGATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
* * *
179548391 CCCTTGATTTACAGAATTACTATTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
179548418 CCCTCGATTTACAAAATTACT
1 CCCTCGATTTACAAAATTACT
179548439 AAAATACCCT
Statistics
Matches: 140, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
26 3 0.02
27 137 0.98
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACTGTTTTA
Found at i:179548446 original size:27 final size:27
Alignment explanation
Indices: 179548160--179548610 Score: 178
Period size: 27 Copynumber: 16.7 Consensus size: 27
179548150 TTAGTTTATT
* *
179548160 AAAATTACCAAAATACCCTTAGTTTGTA-
1 AAAATTACCAAAATACCC-TCGATT-TAC
** **
179548188 AAAA-TACTGAAATACCCTCGATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
** * * **
179548214 AAAATTACTGAAATACCTTCGACTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
*
179548241 AAAATTACCAAAGTACCC-CTGATTTAC
1 AAAATTACCAAAATACCCTC-GATTTAC
**** *
179548268 AAAATTACCGTTTTACCCCCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* **** *
179548295 ATAATTACCGTTTTACCCCCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* * ****
179548322 ATAATTATCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* ****
179548349 AGAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
***** *
179548376 AAAATTACTGTTTTACCCTTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* * ***
179548403 AGAATTACTATTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* * * **
179548430 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
* **
179548457 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTAC
* **
179548484 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTAC
* * * **
179548511 AAAATTACCAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
* * * **
179548538 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
179548565 AAAATTACCAAAATACCC-CTGATTTAC
1 AAAATTACCAAAATACCCTC-GATTTAC
*
179548592 AAAGTTA-CAGAAATACCCT
1 AAAATTACCA-AAATACCCT
179548611 TGACTTTCTA
Statistics
Matches: 357, Mismatches: 57, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
25 1 0.00
26 12 0.03
27 339 0.95
28 5 0.01
ACGTcount: A:0.36, C:0.22, G:0.09, T:0.33
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTAC
Found at i:179548490 original size:81 final size:79
Alignment explanation
Indices: 179548416--179548612 Score: 252
Period size: 81 Copynumber: 2.4 Consensus size: 79
179548406 ATTACTATTT
*
179548416 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCC-CTAGT
1 TACCC-CGATTTACAAAATTAC-AAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTC-AAT
179548480 TTGTAAAATTACCAAAA
63 TTGTAAAATTACCAAAA
* ** * * *
179548497 TACCCCTAGTTTGTAAAATTACCAAAATACCATTGGTTTGTGAAATTACCGAAATACCCTCAATT
1 TACCCCGA-TTTACAAAATTA-CAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTCAATT
179548562 TGTAAAATTACCAAAA
64 TGTAAAATTACCAAAA
*
179548578 TACCCCTGATTTACAAAGTTACAGAAATACCCTTG
1 TACCCC-GATTTACAAAATTACA-AAATACCCTTG
179548613 ACTTTCTAAA
Statistics
Matches: 99, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
80 4 0.04
81 92 0.93
82 3 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (79 bp):
TACCCCGATTTACAAAATTACAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTCAATTTG
TAAAATTACCAAAA
Found at i:179548521 original size:54 final size:54
Alignment explanation
Indices: 179548430--179548584 Score: 213
Period size: 54 Copynumber: 2.9 Consensus size: 54
179548420 CTCGATTTAC
* * *
179548430 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
** *
179548484 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
* * *
179548538 GAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCCT
1 AAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCT
179548585 GATTTACAAA
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 4 0.04
54 85 0.96
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
Found at i:179548652 original size:26 final size:27
Alignment explanation
Indices: 179548425--179548671 Score: 77
Period size: 27 Copynumber: 9.1 Consensus size: 27
179548415 TTACCCTCGA
* *
179548425 TTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACTGAAATACCATTGG
** ** ** *
179548452 TTTGTAAAATTACCAAAATACCCCTAG
1 TTTACAAAATTACTGAAATACCATTGG
** ** ** *
179548479 TTTGTAAAATTACCAAAATACCCCTAG
1 TTTACAAAATTACTGAAATACCATTGG
** **
179548506 TTTGTAAAATTACCAAAATACCATTGG
1 TTTACAAAATTACTGAAATACCATTGG
*** * * ***
179548533 TTTGTGAAATTACCGAAATACCCTCAA
1 TTTACAAAATTACTGAAATACCATTGG
** ** ** *
179548560 TTTGTAAAATTACCAAAATACCCCTGA
1 TTTACAAAATTACTGAAATACCATTGG
* * * *
179548587 TTTACAAAGTTACAGAAATACCCTTGAC
1 TTTACAAAATTACTGAAATACCATTG-G
179548615 TTT-CTAAAAATTA-T-AGAATACCATTGG
1 TTTAC--AAAATTACTGA-AATACCATTGG
*
179548642 TTTACAAAATTACTGAAATACCTTTGG
1 TTTACAAAATTACTGAAATACCATTGG
179548669 TTT
1 TTT
179548672 GTTGATTTAC
Statistics
Matches: 182, Mismatches: 31, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
26 7 0.04
27 155 0.85
28 14 0.08
29 6 0.03
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCATTGG
Found at i:179548755 original size:27 final size:27
Alignment explanation
Indices: 179548725--179548816 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
179548715 ACCCCTATTA
*
179548725 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
*
179548752 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
179548779 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
179548806 GGTAAAATGAC
1 GGTAAAATGAC
179548817 GAATATGCCC
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
27 59 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:179549868 original size:42 final size:42
Alignment explanation
Indices: 179549809--179549900 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
179549799 TAGTCTCCCC
* ** *
179549809 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
179549851 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
179549893 AAATGGGC
1 AAATGGGC
179549901 CTATGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:179549959 original size:31 final size:31
Alignment explanation
Indices: 179549924--179550002 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
179549914 CGTTTACAGT
179549924 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
179549955 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
179549986 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
179550003 AATCGTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:179552950 original size:40 final size:39
Alignment explanation
Indices: 179552785--179552968 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
179552775 AAATTGAATG
* * *
179552785 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
179552825 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
179552865 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
179552905 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
179552944 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
179552969 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:179552993 original size:80 final size:81
Alignment explanation
Indices: 179552825--179553013 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
179552815 GCTGGAAATT
* * * *
179552825 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
179552890 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
179552906 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
179552969 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
179552985 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
179553014 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:179558312 original size:40 final size:40
Alignment explanation
Indices: 179558267--179558396 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
179558257 CGGAATACAA
179558267 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
179558307 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
179558347 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
179558387 CCGGATATAA
1 CCGGATATAA
179558397 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:179562074 original size:26 final size:26
Alignment explanation
Indices: 179562021--179562129 Score: 168
Period size: 26 Copynumber: 4.2 Consensus size: 26
179562011 ATGAAAATTC
179562021 TTATCATGAAACATTTA-CTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
179562046 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
179562072 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
179562098 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
179562124 TTATCA
1 TTATCA
179562130 ATTTGTACCA
Statistics
Matches: 80, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
25 17 0.21
26 61 0.76
27 2 0.03
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:179566615 original size:40 final size:40
Alignment explanation
Indices: 179566529--179566667 Score: 113
Period size: 40 Copynumber: 3.5 Consensus size: 40
179566519 TCTAAATACT
* * *
179566529 TGAAAAGTTTGAAAAGGAGGTTACCTGAAAGGGATAACACA
1 TGAAAAGTTTGAAAAGGA-GTTACCTAAAAAGGATAACAAA
* * *
179566570 TGAAAATTTTGAAAAGGA-TATATCTAAAAAGGATATCAAA
1 TGAAAAGTTTGAAAAGGAGT-TACCTAAAAAGGATAACAAA
* * * *
179566610 TGAAAAGGTTGAAAAGGACGTTA-TTCGAAAAGGATATC-AA
1 TGAAAAGTTTGAAAAGGA-GTTACCT-AAAAAGGATAACAAA
* *
179566650 TGAAAAGGTCGAAAAGGA
1 TGAAAAGTTTGAAAAGGA
179566668 AATCAATGAA
Statistics
Matches: 83, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
39 1 0.01
40 51 0.61
41 30 0.36
42 1 0.01
ACGTcount: A:0.47, C:0.07, G:0.24, T:0.22
Consensus pattern (40 bp):
TGAAAAGTTTGAAAAGGAGTTACCTAAAAAGGATAACAAA
Found at i:179566664 original size:24 final size:24
Alignment explanation
Indices: 179566634--179566706 Score: 103
Period size: 24 Copynumber: 3.0 Consensus size: 24
179566624 AGGACGTTAT
179566634 TCGAAAAGGATATCAATGAAAAGG
1 TCGAAAAGGATATCAATGAAAAGG
*
179566658 TCGAAAAGGAAATCAATGAAAAGG
1 TCGAAAAGGATATCAATGAAAAGG
* *
179566682 TCAAAAATGATAGT-AATGAAAAGG
1 TCGAAAAGGATA-TCAATGAAAAGG
179566706 T
1 T
179566707 TGGTATTTCA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
24 43 0.98
25 1 0.02
ACGTcount: A:0.52, C:0.07, G:0.23, T:0.18
Consensus pattern (24 bp):
TCGAAAAGGATATCAATGAAAAGG
Found at i:179569582 original size:40 final size:40
Alignment explanation
Indices: 179569497--179569647 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
179569487 AATTGAATGA
* * * *
179569497 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
179569537 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
179569578 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
179569617 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
179569648 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:179569661 original size:40 final size:40
Alignment explanation
Indices: 179569534--179569663 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
179569524 ATGCTGGAAA
* * *
179569534 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
179569574 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
179569614 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
179569654 TTATATCCGG
1 TTATATCCGG
179569664 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:179569662 original size:80 final size:80
Alignment explanation
Indices: 179569496--179569663 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
179569486 AAATTGAATG
* *
179569496 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
179569561 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
179569576 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
179569639 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
179569656 ATATCCGG
1 ATATCCGG
179569664 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:179569886 original size:23 final size:23
Alignment explanation
Indices: 179569860--179569905 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
179569850 TATATAATGA
179569860 TGAAGTGTGAAGTAA-GAATGATG
1 TGAA-TGTGAAGTAATGAATGATG
* *
179569883 TGAATGTGTATTAATGAATGATG
1 TGAATGTGAAGTAATGAATGATG
179569906 CATTTGGCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33
Consensus pattern (23 bp):
TGAATGTGAAGTAATGAATGATG
Found at i:179576793 original size:40 final size:40
Alignment explanation
Indices: 179576708--179576858 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
179576698 AATTGAATGA
* * * *
179576708 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
179576748 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
179576789 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
179576828 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
179576859 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:179576872 original size:40 final size:40
Alignment explanation
Indices: 179576745--179576874 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
179576735 ATGCTGGAAA
* * *
179576745 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
179576785 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
179576825 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
179576865 TTATATCCGG
1 TTATATCCGG
179576875 TTATATTCTG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:179576873 original size:80 final size:80
Alignment explanation
Indices: 179576707--179576874 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
179576697 AAATTGAATG
* *
179576707 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
179576772 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
179576787 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
179576850 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
179576867 ATATCCGG
1 ATATCCGG
179576875 TTATATTCTG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:179581881 original size:2 final size:2
Alignment explanation
Indices: 179581874--179581906 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
179581864 GAGACTAGTC
179581874 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
179581907 CATGTCATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:179584282 original size:40 final size:40
Alignment explanation
Indices: 179584197--179584347 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
179584187 AATTGAATGA
* * * *
179584197 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
179584237 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
179584278 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
179584317 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
179584348 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:179584361 original size:40 final size:40
Alignment explanation
Indices: 179584234--179584363 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
179584224 ATGCTGGAAA
* * *
179584234 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
179584274 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
179584314 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
179584354 TTATATCCGG
1 TTATATCCGG
179584364 TTATATTCTG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:179584362 original size:80 final size:80
Alignment explanation
Indices: 179584196--179584363 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
179584186 AAATTGAATG
* *
179584196 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
179584261 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
179584276 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
179584339 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
179584356 ATATCCGG
1 ATATCCGG
179584364 TTATATTCTG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:179589370 original size:2 final size:2
Alignment explanation
Indices: 179589363--179589395 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
179589353 GAGACTAGTC
179589363 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
179589396 CATGTCATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:179591769 original size:40 final size:40
Alignment explanation
Indices: 179591684--179591834 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
179591674 AATTGAATGA
* * * *
179591684 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
179591724 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
179591765 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
179591804 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
179591835 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:179591848 original size:40 final size:40
Alignment explanation
Indices: 179591721--179591850 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
179591711 ATGCTGGAAA
* * *
179591721 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
179591761 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
179591801 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
179591841 TTATATCCGG
1 TTATATCCGG
179591851 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:179591849 original size:80 final size:80
Alignment explanation
Indices: 179591683--179591850 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
179591673 AAATTGAATG
* *
179591683 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
179591748 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
179591763 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
179591826 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
179591843 ATATCCGG
1 ATATCCGG
179591851 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:179598166 original size:40 final size:40
Alignment explanation
Indices: 179598064--179598215 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
179598054 AATTGAATGA
* * * *
179598064 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
179598104 TATCCGGGTTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGG-CTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
179598146 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
179598185 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
179598216 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 52 0.57
41 30 0.33
42 1 0.01
43 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:179598229 original size:40 final size:40
Alignment explanation
Indices: 179598101--179598231 Score: 147
Period size: 40 Copynumber: 3.2 Consensus size: 40
179598091 ATGCTGGAAA
* * *
179598101 TTATATCCGGGTTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGG-CTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
179598142 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
179598182 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
179598222 TTATATCCGG
1 TTATATCCGG
179598232 TTATATTCTG
Statistics
Matches: 72, Mismatches: 17, Indels: 3
0.78 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 62 0.86
41 9 0.12
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:179598231 original size:80 final size:81
Alignment explanation
Indices: 179598063--179598231 Score: 202
Period size: 80 Copynumber: 2.1 Consensus size: 81
179598053 AAATTGAATG
* *
179598063 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGTCTAAGACCCGAAGGC
179598128 AATTGTGCTAGTGGCT
66 AATTGTGCTAGTGGCT
* * * * *
179598144 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGG-CTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGTCTAAGACCCGAAG
* *
179598206 GCATTTGTGC-ACGTGGTT
64 GCAATTGTGCTA-GTGGCT
179598224 ATATCCGG
1 ATATCCGG
179598232 TTATATTCTG
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
79 1 0.01
80 37 0.49
81 37 0.49
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGTCTAAGACCCGAAGGC
AATTGTGCTAGTGGCT
Found at i:179600652 original size:28 final size:28
Alignment explanation
Indices: 179600620--179600674 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
179600610 TACCCGGACA
179600620 TAATCTCCACACGTAGTCATCGGGTCTC
1 TAATCTCCACACGTAGTCATCGGGTCTC
179600648 TAATCTCCACACGTAGTCATCGGGTCT
1 TAATCTCCACACGTAGTCATCGGGTCT
179600675 TACCCGGTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.22, C:0.31, G:0.18, T:0.29
Consensus pattern (28 bp):
TAATCTCCACACGTAGTCATCGGGTCTC
Found at i:179600698 original size:37 final size:37
Alignment explanation
Indices: 179600648--179600718 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
179600638 ATCGGGTCTC
*
179600648 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGTCA
1 TAATCTCCACACGTAGTCATCGGGTCTCACCCGGTCA
179600685 TAATCTCCACACGTAGTCATCGGGTCTCACCCGG
1 TAATCTCCACACGTAGTCATCGGGTCTCACCCGG
179600719 AACATATTCC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (37 bp):
TAATCTCCACACGTAGTCATCGGGTCTCACCCGGTCA
Found at i:179600875 original size:49 final size:49
Alignment explanation
Indices: 179600820--179601081 Score: 422
Period size: 49 Copynumber: 5.4 Consensus size: 49
179600810 TTTTACATTA
*
179600820 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
*
179600869 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
179600918 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
179600967 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACACACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCAC-CACATCG
* * * *
179601017 GCCATTAGGCCTCATCAC--ATACATCCAC-TTCACATTCATCGCATTG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* *
179601063 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTCATCACA
179601082 CATATATGTA
Statistics
Matches: 204, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
46 21 0.10
47 10 0.05
48 9 0.04
49 139 0.68
50 25 0.12
ACGTcount: A:0.29, C:0.34, G:0.09, T:0.27
Consensus pattern (49 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
Found at i:179604408 original size:29 final size:29
Alignment explanation
Indices: 179604376--179604709 Score: 627
Period size: 29 Copynumber: 11.6 Consensus size: 29
179604366 TGTTGAAAAA
* * *
179604376 CTCGTACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
179604405 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
179604434 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
179604463 CTCGCACACAT-GTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
179604491 CTCGCACACAT-GTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
179604519 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
179604548 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
179604577 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
179604606 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
179604635 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
179604664 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
179604693 CTCGCACACATAGTGCC
1 CTCGCACACATAGTGCC
179604710 AATCATTCGC
Statistics
Matches: 301, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
28 56 0.19
29 245 0.81
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACTGAT
Found at i:179606849 original size:37 final size:37
Alignment explanation
Indices: 179606796--179606917 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
179606786 TATAAAAGAA
*
179606796 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
179606833 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
179606870 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
179606907 GTCTCACCCGG
1 GTCTTACCCGG
179606918 AACATATTCC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:179607074 original size:49 final size:49
Alignment explanation
Indices: 179607019--179607282 Score: 456
Period size: 49 Copynumber: 5.4 Consensus size: 49
179607009 TTTTACATTA
*
179607019 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
*
179607068 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
179607117 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
179607166 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* * * *
179607215 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* *
179607264 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTCATCACA
179607283 CATATATGTA
Statistics
Matches: 208, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 208 1.00
ACGTcount: A:0.29, C:0.34, G:0.09, T:0.28
Consensus pattern (49 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
Found at i:179615566 original size:40 final size:40
Alignment explanation
Indices: 179615521--179615686 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
179615511 CGGAATATAA
179615521 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
179615561 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
179615601 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
179615640 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
179615679 CCGGATAT
1 CCGGATAT
179615687 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Done.