Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 577 of 770
Found at i:179904971 original size:40 final size:40
Alignment explanation
Indices: 179904926--179905092 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
179904916 CGGAATATAA
179904926 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
179904966 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
179905006 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
179905046 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
179905085 CCGGATAT
1 CCGGATAT
179905093 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:179905076 original size:80 final size:79
Alignment explanation
Indices: 179904942--179905092 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
179904932 ATAATCACGT
*
179904942 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
179905007 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
179905022 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
179905085 CCGGATAT
64 CCGGATAT
179905093 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:179916215 original size:29 final size:29
Alignment explanation
Indices: 179916181--179916312 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
179916171 TACTCGATTT
** * *
179916181 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
179916210 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
179916239 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
179916268 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
179916297 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
179916313 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:179923560 original size:29 final size:29
Alignment explanation
Indices: 179923526--179923657 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
179923516 TACTCGATTT
** * *
179923526 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
179923555 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
179923584 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
179923613 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
179923642 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
179923658 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:179926898 original size:28 final size:27
Alignment explanation
Indices: 179926835--179926904 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
179926825 ATAGTGAGTC
179926835 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
179926862 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
179926890 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
179926905 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:179934695 original size:28 final size:27
Alignment explanation
Indices: 179934632--179934701 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
179934622 ATAGTGAGTC
179934632 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
179934659 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
179934687 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
179934702 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:179937163 original size:40 final size:40
Alignment explanation
Indices: 179937036--179937165 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
179937026 ATGCTGGAAA
* *
179937036 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
179937076 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
179937116 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
179937156 TTATATCCGG
1 TTATATCCGG
179937166 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:179945217 original size:40 final size:40
Alignment explanation
Indices: 179945090--179945219 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
179945080 ATGCTGGAAA
* *
179945090 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
179945130 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
179945170 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
179945210 TTATATCCGG
1 TTATATCCGG
179945220 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:179951193 original size:43 final size:43
Alignment explanation
Indices: 179951081--179951200 Score: 206
Period size: 42 Copynumber: 2.8 Consensus size: 43
179951071 GTAAAAAAAG
* *
179951081 CGCCGCTAAAAGCCTTGACCTTTAGCGACGCTTTTCCCACAAG
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
179951124 CGCC-CTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
179951166 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT
179951201 TTCCAATAAA
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
42 40 0.55
43 33 0.45
ACGTcount: A:0.22, C:0.33, G:0.19, T:0.26
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:179953098 original size:45 final size:44
Alignment explanation
Indices: 179952935--179953105 Score: 152
Period size: 45 Copynumber: 3.8 Consensus size: 44
179952925 TGTAACCCGC
* * * *
179952935 CCATAAGCGAACTCAGACTCAACTCAA-GAGCTCGGGCGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC--GCATTCGCAT
* * *
179952980 CCAT-AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGCATTCGC-A--T
* *
179953025 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGACATTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCG-CATTCGCAT
*
179953071 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG
179953106 GATGCTCAAC
Statistics
Matches: 102, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 22 0.22
45 39 0.38
46 3 0.03
47 28 0.27
48 5 0.05
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGCATTCGCAT
Found at i:179953103 original size:92 final size:91
Alignment explanation
Indices: 179952942--179953110 Score: 268
Period size: 92 Copynumber: 1.8 Consensus size: 91
179952932 CGCCCATAAG
* * *
179952942 CGAACTCAGACTCAACTCAAGAGCTCGGGCGTTTGCATCCATAGTGAACTCGGACTCAACTCAAC
1 CGAACTCAGACTCAACTCAAGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
179953007 GAGTTCGGATGCCTAGTTACATTTCA
66 GAGTTCGGATGCCTAGTTACATTTCA
* *
179953033 CGAACTCGGACTCAACTCAACGAGTTC-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAA-GAGCTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCA
179953097 ACGAGTTCGGATGC
64 ACGAGTTCGGATGC
179953111 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
91 31 0.44
92 40 0.56
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (91 bp):
CGAACTCAGACTCAACTCAAGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCA
Found at i:179955504 original size:14 final size:14
Alignment explanation
Indices: 179955485--179955545 Score: 70
Period size: 14 Copynumber: 4.3 Consensus size: 14
179955475 CAAAGATAAC
*
179955485 AAGAAAACCGAATA
1 AAGAAATCCGAATA
*
179955499 AAGAAATCC-AAGA
1 AAGAAATCCGAATA
*
179955512 TAAGAAACCCGAATA
1 -AAGAAATCCGAATA
179955527 AAGAAATCCAGAATA
1 AAGAAATCC-GAATA
179955542 AAGA
1 AAGA
179955546 GTCCAGGATA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
13 3 0.08
14 24 0.62
15 12 0.31
ACGTcount: A:0.61, C:0.15, G:0.15, T:0.10
Consensus pattern (14 bp):
AAGAAATCCGAATA
Found at i:179955550 original size:14 final size:14
Alignment explanation
Indices: 179955494--179955560 Score: 57
Period size: 14 Copynumber: 4.7 Consensus size: 14
179955484 CAAGAAAACC
179955494 GAATAAAGAAATCCA
1 GAATAAAG-AATCCA
* *
179955509 -AGAT-AAGAAACCC
1 GA-ATAAAGAATCCA
179955522 GAATAAAGAAATCCA
1 GAATAAAG-AATCCA
*
179955537 GAATAAAGAGTCCA
1 GAATAAAGAATCCA
*
179955551 GGATAAAGAA
1 GAATAAAGAA
179955561 ACCCAAGATA
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
13 6 0.15
14 21 0.51
15 14 0.34
ACGTcount: A:0.57, C:0.13, G:0.18, T:0.12
Consensus pattern (14 bp):
GAATAAAGAATCCA
Found at i:179958530 original size:46 final size:46
Alignment explanation
Indices: 179958463--179958591 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
179958453 TGTAACCCGC
* * * * *
179958463 CCATAAGTGAACTCGGACTCAACTAAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
179958509 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
179958555 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
179958592 TGCTCAACCA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:179958610 original size:46 final size:46
Alignment explanation
Indices: 179958468--179958610 Score: 134
Period size: 46 Copynumber: 3.1 Consensus size: 46
179958458 CCCGCCCATA
* * * *
179958468 AGTGAACTCGGACTCAACTAAACGAGCTCGG--GCGT-TTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-TCATCCATCC-T
* * *
179958513 AGGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 A-GTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCATCCATCCT
*
179958560 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCCATCCT
179958606 AGTGA
1 AGTGA
179958611 CATGTCACTT
Statistics
Matches: 79, Mismatches: 11, Indels: 15
0.75 0.10 0.14
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 63 0.80
47 1 0.01
50 5 0.06
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCCATCCT
Found at i:179969414 original size:22 final size:23
Alignment explanation
Indices: 179969389--179969431 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
179969379 TATCCCCACA
*
179969389 TGGAGTGCAG-GGCTGGACAGAG
1 TGGAGTGCAGAGGCTGAACAGAG
*
179969411 TGGAGTGTAGAGGCTGAACAG
1 TGGAGTGCAGAGGCTGAACAG
179969432 GTCGGATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.26, C:0.12, G:0.47, T:0.16
Consensus pattern (23 bp):
TGGAGTGCAGAGGCTGAACAGAG
Found at i:179982029 original size:29 final size:28
Alignment explanation
Indices: 179981995--179982097 Score: 125
Period size: 29 Copynumber: 3.6 Consensus size: 28
179981985 TACTCAATCA
*
179981995 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
179982024 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
*
179982053 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
179982082 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
179982098 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
28 2 0.03
29 61 0.97
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:179988888 original size:29 final size:28
Alignment explanation
Indices: 179988854--179988956 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
179988844 TACTCAATCA
*
179988854 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
179988883 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
179988912 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
179988941 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
179988957 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:179997435 original size:38 final size:38
Alignment explanation
Indices: 179997343--179997493 Score: 223
Period size: 38 Copynumber: 3.9 Consensus size: 38
179997333 TATGGTAACC
** *
179997343 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAA-T
* *
179997383 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA-T
179997422 CGC-CAATTGCCTTCGGGCTTAGCCCGGATATCACAAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT
179997459 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
179997494 TCGAACATTC
Statistics
Matches: 102, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
37 4 0.04
38 63 0.62
39 20 0.20
40 15 0.15
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (38 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT
Found at i:180002755 original size:79 final size:79
Alignment explanation
Indices: 180002620--180002785 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
180002610 CATTTGAATG
* * * ** *
180002620 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCGGGCTAAGACCCGAAGGC-A
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTGACCAAATCGGGCTAAGACCCGAAGGCAA
*
180002684 TTCGTGCGAGTTGTT
66 TT-GTGCGAGTGGTT
* * *
180002699 ATATCCGGGCTAAGACCC-AAGGCAATTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTGACCAAAT-CGGGCTAAGACCCGAAGGCA
**
180002763 ATTGTGCTTGTGGTT
65 ATTGTGCGAGTGGTT
180002778 ATATCCGG
1 ATATCCGG
180002786 TTAAATCCGA
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
78 18 0.25
79 52 0.71
80 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTGACCAAATCGGGCTAAGACCCGAAGGCAA
TTGTGCGAGTGGTT
Found at i:180002789 original size:39 final size:40
Alignment explanation
Indices: 180002620--180002785 Score: 178
Period size: 39 Copynumber: 4.2 Consensus size: 40
180002610 CATTTGAATG
* * *
180002620 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
180002660 ATAT-CGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATT
* * **
180002699 ATATCCGGGCTAAGACCC-AAGGCAATTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * *
180002738 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
180002778 ATATCCGG
1 ATATCCGG
180002786 TTAAATCCGA
Statistics
Matches: 103, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
38 3 0.03
39 56 0.54
40 44 0.43
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:180007536 original size:68 final size:67
Alignment explanation
Indices: 180007464--180007613 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
180007454 CATCATGTGT
* * * *
180007464 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
180007526 ATGTAG
62 ATGTAG
** * *
180007532 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
180007597 AG
66 AG
180007599 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
180007614 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:180007569 original size:64 final size:64
Alignment explanation
Indices: 180007488--180007671 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
180007478 AGACATTATG
* *
180007488 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
180007552 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
180007617 AA
63 AA
* * * *
180007619 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
180007672 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:180015313 original size:43 final size:43
Alignment explanation
Indices: 180015251--180015408 Score: 228
Period size: 43 Copynumber: 3.7 Consensus size: 43
180015241 CATTCAGGCT
180015251 TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGGGCC
1 TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGGGCC
* * * *
180015294 TCGAGCCTAGCAGGTTATAATACCAGTGAAATAATGTCGGGCC
1 TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGGGCC
* *
180015337 TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCAGGCT
1 TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGGGCC
* * *
180015380 TCGAGCCTAGTAGGC-AAAATACCGGTGAA
1 TCGAGCCTAGCAGGCTATAATGCCGGTGAA
180015409 TGAATTTAAG
Statistics
Matches: 102, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 12 0.12
43 90 0.88
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.22
Consensus pattern (43 bp):
TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGGGCC
Found at i:180018499 original size:31 final size:31
Alignment explanation
Indices: 180018456--180018530 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
180018446 ACGATTATTG
*
180018456 GGCCAAAGCCTTTTCATAAATCATATCACTA
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
* *
180018487 GGCCGAAGCCTTTTCATAAATCATATCATTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
180018518 GGCCGAAGCCTTT
1 GGCCGAAGCCTTT
180018531 ACTGCAAACG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTA
Found at i:180018626 original size:42 final size:42
Alignment explanation
Indices: 180018558--180018645 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
180018548 CCTTAGGCCT
* ** *
180018558 ATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
180018600 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
180018642 ATTT
1 ATTT
180018646 GGGGAGACTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (42 bp):
ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
Found at i:180018861 original size:26 final size:26
Alignment explanation
Indices: 180018790--180018938 Score: 221
Period size: 26 Copynumber: 5.8 Consensus size: 26
180018780 CCTCTTTAAT
*
180018790 AACTGGGGCA-GAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
180018815 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
180018840 AACTGGAGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
180018866 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
180018892 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
180018918 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
180018939 GCACTTCCTC
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 32 0.29
26 80 0.71
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:180018903 original size:52 final size:52
Alignment explanation
Indices: 180018790--180018938 Score: 248
Period size: 52 Copynumber: 2.9 Consensus size: 52
180018780 CCTCTTTAAT
* *
180018790 AACTGGGGCA-GAGCCCTTTTCAGTAAACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
180018840 AACTGGAGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
180018892 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
180018939 GCACTTCCTC
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
50 9 0.10
51 23 0.25
52 60 0.65
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:180019771 original size:27 final size:26
Alignment explanation
Indices: 180019741--180019807 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 26
180019731 GGGCATATTC
180019741 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACC-TACAAGGGCT-TTACG
* *
180019768 GTCACTTTACTCTACAGGGGCTTTACG
1 GTCATTTTAC-CTACAAGGGCTTTACG
*
180019795 GTCTTTTTACCTA
1 GTCATTTTACCTA
180019808 TTAGGGGTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
26 3 0.09
27 29 0.85
28 2 0.06
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.37
Consensus pattern (26 bp):
GTCATTTTACCTACAAGGGCTTTACG
Found at i:180019889 original size:27 final size:27
Alignment explanation
Indices: 180019859--180019992 Score: 76
Period size: 27 Copynumber: 4.9 Consensus size: 27
180019849 GTAAAGCTAC
180019859 AAACTAAGGGTATTTCAGTAATTTTGT
1 AAACTAAGGGTATTTCAGTAATTTTGT
* *
180019886 AAACCAATGGTATTTCCA-TAATTTT-T
1 AAACTAAGGGTATTT-CAGTAATTTTGT
* ** *
180019912 AGAAAGTCAAGGGTATTTTTGTAACTTTGT
1 --AAACT-AAGGGTATTTCAGTAATTTTGT
* ** **
180019942 AAA-TCAGGGGTATTTTGGTAATTTTAC
1 AAACT-AAGGGTATTTCAGTAATTTTGT
* * *
180019969 AAATTGAGGGTATTTCGGTAATTT
1 AAACTAAGGGTATTTCAGTAATTT
180019993 CACAAACCAG
Statistics
Matches: 84, Mismatches: 16, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
26 1 0.01
27 58 0.69
28 9 0.11
29 15 0.18
30 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
AAACTAAGGGTATTTCAGTAATTTTGT
Found at i:180019997 original size:27 final size:25
Alignment explanation
Indices: 180019921--180020045 Score: 115
Period size: 27 Copynumber: 4.7 Consensus size: 25
180019911 TAGAAAGTCA
* * **
180019921 AGGGTATTTTTGTAACTTTGTAAAT
1 AGGGTATTTTGGTAATTTTACAAAT
180019946 CAGGGGTATTTTGGTAATTTTACAAATT
1 -A-GGGTATTTTGGTAATTTTACAAA-T
* * *
180019974 GAGGGTATTTCGGTAATTTCACAAACC
1 -AGGGTATTTTGGTAATTTTACAAA-T
180020001 AGTGGTATTTTGGTAATTTTACAAACT
1 AG-GGTATTTTGGTAATTTTACAAA-T
180020028 AGGGGTATTTTGGTAATT
1 A-GGGTATTTTGGTAATT
180020046 CTATCCTACA
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
26 3 0.04
27 77 0.93
28 3 0.04
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (25 bp):
AGGGTATTTTGGTAATTTTACAAAT
Found at i:180020064 original size:27 final size:27
Alignment explanation
Indices: 180019947--180020048 Score: 118
Period size: 27 Copynumber: 3.8 Consensus size: 27
180019937 TTTGTAAATC
*
180019947 AGGGGTATTTTGGTAATTTTACAAA-T
1 AGGGGTATTTTGGTAATTCTACAAACT
* * *
180019973 TGAGGGTATTTCGGTAATT-TCACAAACC
1 AG-GGGTATTTTGGTAATTCT-ACAAACT
* *
180020001 AGTGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTCTACAAACT
180020028 AGGGGTATTTTGGTAATTCTA
1 AGGGGTATTTTGGTAATTCTA
180020049 TCCTACAGGG
Statistics
Matches: 63, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
26 2 0.03
27 59 0.94
28 2 0.03
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTCTACAAACT
Found at i:180020085 original size:27 final size:26
Alignment explanation
Indices: 180019943--180020085 Score: 103
Period size: 27 Copynumber: 5.3 Consensus size: 26
180019933 TAACTTTGTA
*
180019943 AATCAGGGGTATTTTGGTAATTTTAC
1 AATCAGGGGTATTTTGGTAATTTCAC
* *
180019969 AAAT-TGAGGGTATTTCGGTAATTTCAC
1 -AATCAG-GGGTATTTTGGTAATTTCAC
* * *
180019996 AAACCAGTGGTATTTTGGTAATTTTAC
1 -AATCAGGGGTATTTTGGTAATTTCAC
*
180020023 AAACTAGGGGTATTTTGGTAA-TTCTATC
1 AATC-AGGGGTATTTTGGTAATTTC-A-C
* **
180020051 -CTACAGGGGTATTTCAGTAATTTCAC
1 AAT-CAGGGGTATTTTGGTAATTTCAC
180020077 AATCGAGGG
1 AATC-AGGG
180020086 TAAAACGGTA
Statistics
Matches: 91, Mismatches: 16, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
26 8 0.09
27 77 0.85
28 6 0.07
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (26 bp):
AATCAGGGGTATTTTGGTAATTTCAC
Found at i:180020107 original size:27 final size:27
Alignment explanation
Indices: 180020077--180020222 Score: 220
Period size: 27 Copynumber: 5.4 Consensus size: 27
180020067 GTAATTTCAC
* *
180020077 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
180020104 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
180020131 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
180020158 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
**
180020185 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
180020212 AATCGAGGGTA
1 AATCGAGGGTA
180020223 CTTTGGTAAT
Statistics
Matches: 107, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 107 1.00
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:180020245 original size:54 final size:54
Alignment explanation
Indices: 180020077--180020247 Score: 225
Period size: 54 Copynumber: 3.2 Consensus size: 54
180020067 GTAATTTCAC
* * *
180020077 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACA
* * *
180020131 AATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACA
* * *** *
180020185 AATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACA
*
180020239 AGTCGAGGG
1 AATCGAGGG
180020248 CATTTCAAAA
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 103 1.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (54 bp):
AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACA
Found at i:180020247 original size:81 final size:80
Alignment explanation
Indices: 180020065--180020222 Score: 246
Period size: 81 Copynumber: 2.0 Consensus size: 80
180020055 AGGGGTATTT
* * * *
180020065 CAGTAATTTCACAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTAT
1 CAGTAATTTTACAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTAT
180020130 AAATCAAGGGTAAAA
66 AAATCAAGGGTAAAA
180020145 CAGTAATTCTGTA-AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCT
1 CAGTAATT-T-TACAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCT
*
180020209 ATAAATCGAGGGTA
64 ATAAATCAAGGGTA
180020223 CTTTGGTAAT
Statistics
Matches: 71, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
80 8 0.11
81 62 0.87
82 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.28
Consensus pattern (80 bp):
CAGTAATTTTACAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTAT
AAATCAAGGGTAAAA
Found at i:180021872 original size:39 final size:39
Alignment explanation
Indices: 180021818--180021970 Score: 227
Period size: 39 Copynumber: 3.9 Consensus size: 39
180021808 GAATGTTCGA
*
180021818 GTGATAAT-CGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGAT-ATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
180021857 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
180021896 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* * *
180021935 GTGATATCTGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
180021971 GGTTACCATA
Statistics
Matches: 104, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 2 0.02
39 85 0.82
40 17 0.16
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:180021995 original size:40 final size:39
Alignment explanation
Indices: 180021826--180022001 Score: 226
Period size: 39 Copynumber: 4.5 Consensus size: 39
180021816 GAGTGATAAT
* *
180021826 CGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATC
1 CGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATC
*
180021865 CGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATC
1 CGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATC
*
180021904 CGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATC
1 CGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATC
* * * * ** *
180021943 TGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAAC
1 CGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTATGATATC
*
180021983 CGGGCTATGTCCCGAAGGC
1 CGGGCTAAG-CCCGAAGGC
180022002 GTTTGAACGA
Statistics
Matches: 120, Mismatches: 16, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 80 0.67
40 40 0.33
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
CGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATC
Found at i:180026674 original size:39 final size:40
Alignment explanation
Indices: 180026558--180026713 Score: 217
Period size: 39 Copynumber: 4.0 Consensus size: 40
180026548 CTCGTTCAAA
* * * * * *
180026558 TGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATCACAACTCGCACAAT
*
180026598 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGATATCACAACTCGCACAAT
* *
180026638 TGCCTTCGGG-CTTAGCCCGGATATCATAACTTGCACAAT
1 TGCCTTCGGGACTTAGCCCGGATATCACAACTCGCACAAT
180026677 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACA
1 TGCCTTCGGGACTTAGCCCGGATATCACAACTCGCACA
180026714 TTCATACACA
Statistics
Matches: 104, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 61 0.59
40 43 0.41
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATCACAACTCGCACAAT
Found at i:180026674 original size:79 final size:79
Alignment explanation
Indices: 180026558--180026713 Score: 233
Period size: 79 Copynumber: 2.0 Consensus size: 79
180026548 CTCGTTCAAA
* *
180026558 TGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATAT
1 TGCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGG-CTTAACCCGGATAT
180026623 CACAACTCGCACAAT
65 CACAACTCGCACAAT
* ** * *
180026638 TGCCTTCGGG-CTTAGCCCGGATATCATAACTTGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGCTTAACCCGGATATC
180026702 ACAACTCGCACA
66 ACAACTCGCACA
180026714 TTCATACACA
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
78 26 0.38
79 33 0.48
80 10 0.14
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (79 bp):
TGCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGCTTAACCCGGATATC
ACAACTCGCACAAT
Found at i:180038356 original size:39 final size:40
Alignment explanation
Indices: 180038298--180038398 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
180038288 AAATTGAATG
* *
180038298 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
180038337 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
180038377 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
180038399 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:180038391 original size:40 final size:40
Alignment explanation
Indices: 180038298--180038479 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
180038288 AAATTGAATG
* * * * *
180038298 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
180038337 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
180038377 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
180038417 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
180038457 ATATCCGGG-TAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
180038480 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 44 0.36
40 75 0.62
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:180041995 original size:40 final size:40
Alignment explanation
Indices: 180041950--180042116 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
180041940 CGGAATATAA
180041950 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
180041990 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
180042030 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
180042070 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
180042109 CCGGATAT
1 CCGGATAT
180042117 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:180042100 original size:80 final size:79
Alignment explanation
Indices: 180041950--180042116 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
180041940 CGGAATATAA
* *
180041950 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
180042015 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
180042030 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
180042092 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
180042109 CCGGATAT
1 CCGGATAT
180042117 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:180042964 original size:17 final size:19
Alignment explanation
Indices: 180042941--180042986 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
180042931 AAGAAGCATG
180042941 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
180042959 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
180042977 AATCATGCTC
1 AATCATGCTC
180042987 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:180049993 original size:40 final size:40
Alignment explanation
Indices: 180049948--180050114 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
180049938 CGGAATATAA
180049948 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
180049988 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
180050028 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
180050068 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
180050107 CCGGATAT
1 CCGGATAT
180050115 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:180050098 original size:80 final size:79
Alignment explanation
Indices: 180049948--180050114 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
180049938 CGGAATATAA
* *
180049948 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
180050013 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
180050028 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
180050090 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
180050107 CCGGATAT
1 CCGGATAT
180050115 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:180050962 original size:17 final size:19
Alignment explanation
Indices: 180050939--180050984 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
180050929 AAGAAGCATG
180050939 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
180050957 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
180050975 AATCATGCTC
1 AATCATGCTC
180050985 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:180056382 original size:19 final size:21
Alignment explanation
Indices: 180056354--180056397 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 21
180056344 TACATTTTAT
180056354 TTATAAATTTTA-T-TATATA
1 TTATAAATTTTACTATATATA
*
180056373 TTATATATTTTACTATATATA
1 TTATAAATTTTACTATATATA
180056394 TTAT
1 TTAT
180056398 TCTTTGCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 11 0.50
20 1 0.05
21 10 0.45
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (21 bp):
TTATAAATTTTACTATATATA
Found at i:180056821 original size:27 final size:25
Alignment explanation
Indices: 180056791--180056840 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
180056781 TTACTTATAT
*
180056791 ATTGTTTAATATTTTTTATTTTTTTTC
1 ATTGTTT-ATA-TTTTGATTTTTTTTC
*
180056818 ATTGTTTCTATTTTGATTTTTTT
1 ATTGTTTATATTTTGATTTTTTT
180056841 ATTAGGTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 12 0.57
26 2 0.10
27 7 0.33
ACGTcount: A:0.16, C:0.04, G:0.06, T:0.74
Consensus pattern (25 bp):
ATTGTTTATATTTTGATTTTTTTTC
Found at i:180059474 original size:29 final size:29
Alignment explanation
Indices: 180059441--180059571 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
180059431 GTGACGAGAT
180059441 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
180059470 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
180059499 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
180059528 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
180059557 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
180059572 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:180067503 original size:29 final size:29
Alignment explanation
Indices: 180067470--180067600 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
180067460 GTGACGAGAT
180067470 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
180067499 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
180067528 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
180067557 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
180067586 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
180067601 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:180075390 original size:40 final size:40
Alignment explanation
Indices: 180075330--180075507 Score: 254
Period size: 40 Copynumber: 4.5 Consensus size: 40
180075320 CGGATGATAA
*
180075330 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-T
*
180075370 CCGGGCTAAGTCCCGCAGGCATTTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
*
180075410 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* *
180075450 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
* *
180075490 CC-GGCTAAATCTCGAAGG
1 CCGGGCTAAGTCCCGAAGG
180075508 TACTTGGGTT
Statistics
Matches: 129, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
39 16 0.12
40 112 0.87
41 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:180082619 original size:28 final size:26
Alignment explanation
Indices: 180082564--180082675 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
180082554 AGCATGGCTG
* * *
180082564 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGATCAGATAATGTGGCAGAGCCA
180082590 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAT-CAGATAAT-GTGGCAGAGCCA
*
180082618 CCAGAGT-AGATATATGTGGCAGAACCA
1 CCAGA-TCAGATA-ATGTGGCAGAGCCA
* *
180082645 CTAGATCAGATAATTGTGGCATAGCCA
1 CCAGATCAGATAA-TGTGGCAGAGCCA
180082672 CCAG
1 CCAG
180082676 GACACTTCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
26 7 0.10
27 47 0.65
28 17 0.24
29 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (26 bp):
CCAGATCAGATAATGTGGCAGAGCCA
Found at i:180082823 original size:26 final size:27
Alignment explanation
Indices: 180082779--180082854 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
180082769 CAAAAGTAAT
* *
180082779 CCTAGGGGTATAAT-GGTAATTT-TACA
1 CCTAGGGGTAT-ATCAGTAATTTCCACA
*
180082805 CCTAGGGGTATATCAGTAATTTCCATA
1 CCTAGGGGTATATCAGTAATTTCCACA
*
180082832 CATAGGGGTAT-TCAAGTAATTTC
1 CCTAGGGGTATATC-AGTAATTTC
180082855 ACTATTCTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
25 2 0.05
26 20 0.47
27 21 0.49
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.34
Consensus pattern (27 bp):
CCTAGGGGTATATCAGTAATTTCCACA
Found at i:180083118 original size:8 final size:8
Alignment explanation
Indices: 180083091--180083121 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
180083081 TCAAAATACT
180083091 GGCTTTTC
1 GGCTTTTC
*
180083099 GGCATTTC
1 GGCTTTTC
180083107 GGCTTTTC
1 GGCTTTTC
180083115 GGCTTTT
1 GGCTTTT
180083122 GCCGATCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.03, C:0.23, G:0.26, T:0.48
Consensus pattern (8 bp):
GGCTTTTC
Found at i:180087230 original size:168 final size:168
Alignment explanation
Indices: 180086819--180087237 Score: 637
Period size: 168 Copynumber: 2.5 Consensus size: 168
180086809 TTTTTAGTTC
* * *
180086819 GCATCGATATGTGATTCTGAAATATGTGTACGAGTAAGACCATATTTAATACATTGGCATCAATA
1 GCATCGATATGTGATTCTGAAATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCAATA
*** * * *
180086884 AGTGATTCCAAAATATGTGTGTGAGTAAGACCATGTTTAATATGTTGGCATCAATGTGTGATTCT
66 AGTGATTTTGAAATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCAATATGTGATTCT
180086949 GAAATATGTGTGCGAGTAAGACCAATTTTAATACGTTG
131 GAAATATGTGTGCGAGTAAGACCAATTTTAATACGTTG
180086987 GCATCGATATGTGATTCTGAAATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCAATA
1 GCATCGATATGTGATTCTGAAATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCAATA
* * * *
180087052 ACTAATTTTGAAATATGTGTGCGATTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCT
66 AGTGATTTTGAAATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCAATATGTGATTCT
*
180087117 GAAATATGTGTGCGAGTAAGACGACA-TTTAATACGTTG
131 GAAATATGTGTGCGAGTAAGACCA-ATTTTAATACGTTG
* * * *
180087155 GCATCGATATGTGATTCCGAAATATGTGTGCGACTAAGACCACATTTAATACGTTAGCATCGATA
1 GCATCGATATGTGATTCTGAAATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCAATA
*
180087220 TGTGATTTTG--ATATGTGT
66 AGTGATTTTGAAATATGTGT
180087238 TTACAAGTAA
Statistics
Matches: 229, Mismatches: 21, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
166 8 0.03
168 220 0.96
169 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.34
Consensus pattern (168 bp):
GCATCGATATGTGATTCTGAAATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCAATA
AGTGATTTTGAAATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCAATATGTGATTCT
GAAATATGTGTGCGAGTAAGACCAATTTTAATACGTTG
Found at i:180087251 original size:56 final size:56
Alignment explanation
Indices: 180086819--180087226 Score: 575
Period size: 56 Copynumber: 7.3 Consensus size: 56
180086809 TTTTTAGTTC
* * *
180086819 GCATCGATATGTGATTCTGAAATATGTGTACGAGTAAGACCATATTTAATACATTG
1 GCATCGATATGTGATTCTGAAATATGTGTGCGAGTAAGACCACATTTAATACGTTG
* * ** * ** *
180086875 GCATCAATAAGTGATTCCAAAATATGTGTGTGAGTAAGACCATGTTTAATATGTTG
1 GCATCGATATGTGATTCTGAAATATGTGTGCGAGTAAGACCACATTTAATACGTTG
* *
180086931 GCATCAATGTGTGATTCTGAAATATGTGTGCGAGTAAGACCA-ATTTTAATACGTTG
1 GCATCGATATGTGATTCTGAAATATGTGTGCGAGTAAGACCACA-TTTAATACGTTG
180086987 GCATCGATATGTGATTCTGAAATATGTGTGCGAGTAAGACCACATTTAATACGTTG
1 GCATCGATATGTGATTCTGAAATATGTGTGCGAGTAAGACCACATTTAATACGTTG
* ** * * * * *
180087043 GCATCAATAACTAATTTTGAAATATGTGTGCGATTAAGACCACGTTTAATATGTTG
1 GCATCGATATGTGATTCTGAAATATGTGTGCGAGTAAGACCACATTTAATACGTTG
*
180087099 GCATCGATATGTGATTCTGAAATATGTGTGCGAGTAAGACGACATTTAATACGTTG
1 GCATCGATATGTGATTCTGAAATATGTGTGCGAGTAAGACCACATTTAATACGTTG
* * *
180087155 GCATCGATATGTGATTCCGAAATATGTGTGCGACTAAGACCACATTTAATACGTTA
1 GCATCGATATGTGATTCTGAAATATGTGTGCGAGTAAGACCACATTTAATACGTTG
180087211 GCATCGATATGTGATT
1 GCATCGATATGTGATT
180087227 TTGATATGTG
Statistics
Matches: 311, Mismatches: 39, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
56 310 1.00
57 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (56 bp):
GCATCGATATGTGATTCTGAAATATGTGTGCGAGTAAGACCACATTTAATACGTTG
Found at i:180089860 original size:17 final size:21
Alignment explanation
Indices: 180089827--180089884 Score: 116
Period size: 21 Copynumber: 2.8 Consensus size: 21
180089817 TAATCCCCAT
180089827 ATGGTGTGTTGGTTGGTACGG
1 ATGGTGTGTTGGTTGGTACGG
180089848 ATGGTGTGTTGGTTGGTACGG
1 ATGGTGTGTTGGTTGGTACGG
180089869 ATGGTGTGTTGGTTGG
1 ATGGTGTGTTGGTTGG
180089885 ATTAGGCTGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.09, C:0.03, G:0.48, T:0.40
Consensus pattern (21 bp):
ATGGTGTGTTGGTTGGTACGG
Found at i:180089972 original size:33 final size:33
Alignment explanation
Indices: 180089917--180089981 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
180089907 ATATCTGCAT
*
180089917 CTGATACTGATTCTATATTGGGCTTAGGCCCAC
1 CTGATACTGATTCTATATTGGGCTCAGGCCCAC
* *
180089950 CTGATACTGTTTCTTTGA-TGGGCTCAGGCCCA
1 CTGATACTGATTCTAT-ATTGGGCTCAGGCCCA
180089982 GACTGTTTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (33 bp):
CTGATACTGATTCTATATTGGGCTCAGGCCCAC
Found at i:180092444 original size:3 final size:3
Alignment explanation
Indices: 180092436--180092466 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
180092426 TGTTTATGAA
180092436 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
180092467 GTAATTAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:180095766 original size:49 final size:49
Alignment explanation
Indices: 180095637--180096053 Score: 599
Period size: 49 Copynumber: 8.4 Consensus size: 49
180095627 CCCTTCGGGA
* *
180095637 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
180095684 CCTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
180095731 CTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
180095780 CTTATCACATATATATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC------AT---ATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
180095840 CTTATCACATATATACACACTTTCACATTCATCACGTCCGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
180095889 CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
180095938 CTTATCACATATATATACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
180095987 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
180096036 CTTATCACATATATATAC
1 CTTATCACATATATATAC
180096054 CTCATACAAA
Statistics
Matches: 337, Mismatches: 18, Indels: 28
0.88 0.05 0.07
Matches are distributed among these distances:
46 1 0.00
47 47 0.14
49 235 0.70
51 5 0.01
54 2 0.01
55 2 0.01
58 5 0.01
60 40 0.12
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:180097567 original size:40 final size:40
Alignment explanation
Indices: 180097522--180097651 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
180097512 CGGAATACAA
180097522 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
180097562 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
180097602 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
180097642 CCGGATATAA
1 CCGGATATAA
180097652 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:180097666 original size:40 final size:40
Alignment explanation
Indices: 180097522--180097684 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
180097512 CGGAATACAA
* **
180097522 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
180097562 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
180097602 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
180097642 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
180097681 CCGG
1 CCGG
180097685 TATCATTCAA
Statistics
Matches: 100, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
39 11 0.11
40 89 0.89
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:180100452 original size:38 final size:36
Alignment explanation
Indices: 180100365--180100509 Score: 186
Period size: 35 Copynumber: 3.9 Consensus size: 36
180100355 ATATAACCAG
*
180100365 TGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAA-
1 TGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAC
180100400 TGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATC
1 TGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAA-C
*
180100437 TCGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCAC
1 T-GCACGAATGCCTTCGGGTCTTAGCCCGGA--TAG-AAC
*
180100477 TAGCAC-AATTGCCTTCGGGTCTTAACCCGGATA
1 T-GCACGAA-TGCCTTCGGGTCTTAGCCCGGATA
180100510 TAATTTCCAG
Statistics
Matches: 99, Mismatches: 4, Indels: 11
0.87 0.04 0.10
Matches are distributed among these distances:
35 34 0.34
37 1 0.01
38 31 0.31
39 2 0.02
40 30 0.30
41 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (36 bp):
TGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAC
Found at i:180100457 original size:73 final size:76
Alignment explanation
Indices: 180100366--180100509 Score: 206
Period size: 73 Copynumber: 1.9 Consensus size: 76
180100356 TATAACCAGT
*
180100366 GCACAAATGCCTTCGGGTCTTAGCCCGGA-TAG-AAT-GCACGAA-TGCCTTCGGGTCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAGTAGCAATAGCAC-AATTGCCTTCGGGTCTTAACCC
180100427 GGATAGAATCTC
65 GGATAGAATCTC
* *
180100439 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAACC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGA-GTAG-CAATAGCACAATTGCCTTCGGGTCTTAACC
180100504 CGGATA
64 CGGATA
180100510 TAATTTCCAG
Statistics
Matches: 62, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
73 28 0.45
75 3 0.05
77 4 0.06
78 27 0.44
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (76 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGAGTAGCAATAGCACAATTGCCTTCGGGTCTTAACCCG
GATAGAATCTC
Found at i:180100527 original size:40 final size:40
Alignment explanation
Indices: 180100366--180100549 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 40
180100356 TATAACCAGT
* *
180100366 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAA--T---
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
*
180100401 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATAGAATCT-C-
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* ** * *
180100439 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
180100479 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
180100519 GCATAATTGTCTTCGGG-ATTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
180100550 CATTCAATTT
Statistics
Matches: 125, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
35 31 0.25
36 2 0.02
37 1 0.01
38 32 0.26
39 14 0.11
40 45 0.36
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:180109606 original size:27 final size:26
Alignment explanation
Indices: 180109498--180109617 Score: 93
Period size: 26 Copynumber: 4.6 Consensus size: 26
180109488 TTAGTTTACC
* *
180109498 AAATTATTGAAATACCCCCAGTTGTA
1 AAATTATCGAAATACCCCGAGTTGTA
* * *
180109524 AAATTA-CCAAAGTA-CCCGATTTATA
1 AAATTATCGAAA-TACCCCGAGTTGTA
* * **
180109549 AAATTACCAAAATACCATTG-GTTGTA
1 AAATTATCGAAATACC-CCGAGTTGTA
* *
180109575 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCC-CGAGTTGTA
180109602 AAATTATCGAAATACC
1 AAATTATCGAAATACC
180109618 TGACAGCCCA
Statistics
Matches: 71, Mismatches: 17, Indels: 11
0.72 0.17 0.11
Matches are distributed among these distances:
25 19 0.27
26 31 0.44
27 21 0.30
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (26 bp):
AAATTATCGAAATACCCCGAGTTGTA
Found at i:180111453 original size:40 final size:39
Alignment explanation
Indices: 180111288--180111471 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
180111278 AAATTGAATG
* * *
180111288 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
180111328 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
180111368 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
180111408 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
180111447 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
180111472 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:180111496 original size:80 final size:81
Alignment explanation
Indices: 180111328--180111516 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
180111318 GCTGGAAATT
* * * *
180111328 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
180111393 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
180111409 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
180111472 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
180111488 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
180111517 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:180119005 original size:40 final size:40
Alignment explanation
Indices: 180118960--180119126 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
180118950 CGGAATATAA
180118960 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
180119000 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
180119040 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
180119080 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
180119119 CCGGATAT
1 CCGGATAT
180119127 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:180119110 original size:80 final size:79
Alignment explanation
Indices: 180118976--180119126 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
180118966 ATAATCACGT
*
180118976 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
180119041 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
180119056 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
180119119 CCGGATAT
64 CCGGATAT
180119127 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:180127013 original size:40 final size:40
Alignment explanation
Indices: 180126968--180127134 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
180126958 CGGAATATAA
180126968 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
180127008 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
180127048 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
180127088 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
180127127 CCGGATAT
1 CCGGATAT
180127135 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:180127118 original size:80 final size:79
Alignment explanation
Indices: 180126984--180127134 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
180126974 ATAATCACGT
*
180126984 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
180127049 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
180127064 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
180127127 CCGGATAT
64 CCGGATAT
180127135 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:180130783 original size:40 final size:39
Alignment explanation
Indices: 180130618--180130801 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
180130608 AAATTGAATG
* * *
180130618 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
180130658 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
180130698 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
180130738 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
180130777 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
180130802 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:180130826 original size:80 final size:81
Alignment explanation
Indices: 180130658--180130846 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
180130648 GCTGGAAATT
* * * *
180130658 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
180130723 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
180130739 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
180130802 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
180130818 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
180130847 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:180132340 original size:27 final size:27
Alignment explanation
Indices: 180132310--180132445 Score: 200
Period size: 27 Copynumber: 5.0 Consensus size: 27
180132300 CCTGTAAGAT
180132310 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*** *
180132337 AGAATTATTGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
180132364 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
180132391 AGAATTACAATTTTACCTTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
*
180132418 AGAATTACCATTTTACCCTAGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
180132445 A
1 A
180132446 ATTACTGAAA
Statistics
Matches: 94, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:180132343 original size:54 final size:54
Alignment explanation
Indices: 180132285--180132445 Score: 148
Period size: 54 Copynumber: 3.0 Consensus size: 54
180132275 CAATTTGTAA
180132285 AATTACCAAAATACTCCT-G-TAAGATAGAATTACCATTTTACCCTCGATTTACAG
1 AATTACCAAAATAC-CCTCGAT-AGATAGAATTACCATTTTACCCTCGATTTACAG
****** **
180132339 AATTATTGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAG
1 AATTACCAAAATACCCTCGATAGATAGAATTACCATTTTACCCTCGATTTACAG
** * ** *
180132393 AATTA-CAATTTTACCTTCGATTTATAGAATTACCATTTTACCCTAGATTTACA
1 AATTACCAA-AATACCCTCGATAGATAGAATTACCATTTTACCCTCGATTTACA
180132446 ATTACTGAAA
Statistics
Matches: 91, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
53 3 0.03
54 87 0.96
55 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.39
Consensus pattern (54 bp):
AATTACCAAAATACCCTCGATAGATAGAATTACCATTTTACCCTCGATTTACAG
Found at i:180132483 original size:27 final size:27
Alignment explanation
Indices: 180132453--180132544 Score: 103
Period size: 27 Copynumber: 3.4 Consensus size: 27
180132443 ACAATTACTG
* *
180132453 AAATACCTTTGGTTTACAAAATTACCA
1 AAATACCCTTGGTTTATAAAATTACCA
* * **
180132480 AAATACCCTCGATCAATAAAATTACCA
1 AAATACCCTTGGTTTATAAAATTACCA
* * *
180132507 AAATACCCCTGGTTTGTAAAATTACCG
1 AAATACCCTTGGTTTATAAAATTACCA
180132534 AAATACCCTTG
1 AAATACCCTTG
180132545 TAGGGTAGAA
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (27 bp):
AAATACCCTTGGTTTATAAAATTACCA
Found at i:180132556 original size:27 final size:27
Alignment explanation
Indices: 180132526--180132800 Score: 385
Period size: 27 Copynumber: 10.3 Consensus size: 27
180132516 TGGTTTGTAA
180132526 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
180132553 AATTACCGGAATACTCC-TGTAGGGTAG
1 AATTACCGAAATAC-CCTTGTAGGGTAG
* *
180132580 AATTACCGGAATACCCTTGTAGGGTGG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
180132607 AATTACCGGAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
180132634 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
180132661 AATTATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
180132688 AATTACCGAAATACCC-TGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
180132714 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
180132741 AATTACCAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
180132768 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
180132794 AATTACC
1 AATTACC
180132801 ATTTTGCCCT
Statistics
Matches: 228, Mismatches: 17, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
26 43 0.19
27 183 0.80
28 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:180132557 original size:81 final size:80
Alignment explanation
Indices: 180132472--180132800 Score: 364
Period size: 81 Copynumber: 4.1 Consensus size: 80
180132462 TGGTTTACAA
* * * * ** *
180132472 AATTACCAAAATACCCTCGATCA-ATAAAATTACCAAAATACCCCTGGT-TTGTAAAATTACCGA
1 AATTACCGAAATACCCT-GAT-AGGTAGAATTACCGAAATACCCCT-GTAGGGTAGAATTACCGA
180132535 AATACCCTTGTAGGGTAG
63 AATACCCTTGTAGGGTAG
* * * * *
180132553 AATTACCGGAATACTCCTG-TAGGGTAGAATTACCGGAATACCCTTGTAGGGTGGAATTACCGGA
1 AATTACCGAAATAC-CCTGATA-GGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAA
180132617 ATACCCTTGTAGGGTAG
64 ATACCCTTGTAGGGTAG
* * *
180132634 AATTACCGAAATACCCTTATAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAATTACCGAAA
1 AATTACCGAAATACCCTGATA-GGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
180132699 TACCC-TGTAGGGTAG
65 TACCCTTGTAGGGTAG
* * *
180132714 AATTACCGAAATACCCCTG-TAGGGTAGAATTACCAAAATACCCCTGTAGGGTGGAATTACCGAG
1 AATTACCGAAATA-CCCTGATA-GGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAA
* *
180132778 ATA-CCTTGTGGGGTAA
64 ATACCCTTGTAGGGTAG
180132794 AATTACC
1 AATTACC
180132801 ATTTTGCCCT
Statistics
Matches: 213, Mismatches: 28, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.01
80 87 0.41
81 120 0.56
82 3 0.01
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (80 bp):
AATTACCGAAATACCCTGATAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAAT
ACCCTTGTAGGGTAG
Found at i:180132826 original size:80 final size:79
Alignment explanation
Indices: 180132526--180132800 Score: 324
Period size: 80 Copynumber: 3.4 Consensus size: 79
180132516 TGGTTTGTAA
* *
180132526 AATTACCGAAATACCCTTGTAGGGTAGAATTACCGGAA-TACTCCTGT-AGGGTAGAATTACCGG
1 AATTACCGAGATA-CCTTGTAGGGTAGAATTACC-GAATTAC-CCT-TAAGGGTAGAATTACCGA
*
180132589 AATACCCTTGTAGGGTGG
62 AATACCCCTGTAGGGTGG
* *
180132607 AATTACCG-GAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTAGAATTATCGAA
1 AATTACCGAG-ATA-CCTTGTAGGGTAGAATTACCGAATTACCCTTA-AGGGTAGAATTACCGAA
* *
180132671 ATACCCCTATAGGGTAG
63 ATACCCCTGTAGGGTGG
* * * *
180132688 AATTACCGAAATACCCTGTAGGGTAGAATTACCGAAATACCCCTGT-AGGGTAGAATTACCAAAA
1 AATTACCGAGATACCTTGTAGGGTAGAATTACCGAATTA-CCCT-TAAGGGTAGAATTACCGAAA
180132752 TACCCCTGTAGGGTGG
64 TACCCCTGTAGGGTGG
* *
180132768 AATTACCGAGATACCTTGTGGGGTAAAATTACC
1 AATTACCGAGATACCTTGTAGGGTAGAATTACC
180132801 ATTTTGCCCT
Statistics
Matches: 171, Mismatches: 16, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
79 1 0.01
80 90 0.53
81 79 0.46
82 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (79 bp):
AATTACCGAGATACCTTGTAGGGTAGAATTACCGAATTACCCTTAAGGGTAGAATTACCGAAATA
CCCCTGTAGGGTGG
Found at i:180133279 original size:22 final size:22
Alignment explanation
Indices: 180133227--180133291 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
180133217 TTAAAGCCTT
* * *
180133227 CTGATTATGACTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
180133249 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
180133271 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
180133292 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:180133550 original size:27 final size:26
Alignment explanation
Indices: 180133449--180133550 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
180133439 ATTCTGTTAA
* * *
180133449 GTGGCTTTGCCACATTATCTATTTCTG
1 GTGGCTCTGCCACAATATCT-GTTCTG
*
180133476 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
*
180133503 GTGGCTCTGCCATAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
180133530 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
180133551 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 9 0.14
27 50 0.77
28 6 0.09
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:180133720 original size:31 final size:31
Alignment explanation
Indices: 180133682--180133748 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
180133672 TTGCATTCAC
* * *
180133682 ATTCTGATTTTGATTTTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGAAACTA
180133713 ATTCTGATTTTGATTCTGTTACCTGAAACTA
1 ATTCTGATTTTGATTCTGTTACCTGAAACTA
180133744 ATTCT
1 ATTCT
180133749 AATTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.22, C:0.15, G:0.13, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGAAACTA
Found at i:180133759 original size:31 final size:31
Alignment explanation
Indices: 180133693--180133761 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
180133683 TTCTGATTTT
* * * * **
180133693 GATTTTGTTACCTGATACTGATTCTGATTTT
1 GATTCTGTTACCTGAAACTAATTCTAATTCG
180133724 GATTCTGTTACCTGAAACTAATTCTAATTCG
1 GATTCTGTTACCTGAAACTAATTCTAATTCG
180133755 GATTCTG
1 GATTCTG
180133762 ATTCTAGTTC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.16, G:0.16, T:0.45
Consensus pattern (31 bp):
GATTCTGTTACCTGAAACTAATTCTAATTCG
Found at i:180135214 original size:40 final size:40
Alignment explanation
Indices: 180135169--180135336 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
180135159 CGGAATATAA
*
180135169 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
180135209 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
180135249 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
180135289 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
180135329 CCGGATAT
1 CCGGATAT
180135337 CATTCAATTT
Statistics
Matches: 103, Mismatches: 24, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
40 102 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:180135319 original size:80 final size:80
Alignment explanation
Indices: 180135185--180135334 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
180135175 ATAACCATGT
* *
180135185 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
180135250 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
180135265 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
180135328 CCCGGAT
64 CCCGGAT
180135335 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:180143199 original size:40 final size:40
Alignment explanation
Indices: 180143154--180143318 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
180143144 CGGAATATAA
*
180143154 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
180143194 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
180143234 CCGG--ATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
180143272 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
180143311 CCGGATAT
1 CCGGATAT
180143319 CATTCAATTT
Statistics
Matches: 101, Mismatches: 21, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
38 30 0.30
39 13 0.13
40 57 0.56
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:180143302 original size:78 final size:77
Alignment explanation
Indices: 180143170--180143317 Score: 192
Period size: 78 Copynumber: 1.9 Consensus size: 77
180143160 ATAACCATGT
*
180143170 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
180143235 CGGATAGCCACTA
65 CGGATAGCCACTA
* * ** * *
180143248 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
180143311 CCGGATA
64 CCGGATA
180143318 TCATTCAATT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
77 16 0.26
78 45 0.74
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.26
Consensus pattern (77 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATAGCCACTA
Found at i:180146082 original size:85 final size:85
Alignment explanation
Indices: 180145939--180146096 Score: 298
Period size: 85 Copynumber: 1.9 Consensus size: 85
180145929 GTGACGAGAT
*
180145939 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
180146004 AAGTGTGCATGCTGGAAATA
66 AAGTGTGCATGCTGGAAATA
*
180146024 TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTGAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
180146089 AAGTGTGC
66 AAGTGTGC
180146097 GAGCTCGAAG
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 71 1.00
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.27
Consensus pattern (85 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
AAGTGTGCATGCTGGAAATA
Found at i:180146117 original size:29 final size:29
Alignment explanation
Indices: 180145939--180146096 Score: 284
Period size: 29 Copynumber: 5.5 Consensus size: 29
180145929 GTGACGAGAT
180145939 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
180145968 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
180145997 TGGCACTAAGTGTGCATGCTGG-AA-ATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
180146024 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
180146053 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
180146082 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
180146097 GAGCTCGAAG
Statistics
Matches: 124, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
27 25 0.20
28 4 0.03
29 95 0.77
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:180146122 original size:85 final size:84
Alignment explanation
Indices: 180145939--180146122 Score: 273
Period size: 85 Copynumber: 2.2 Consensus size: 84
180145929 GTGACGAGAT
*
180145939 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACT-AGTGTGCATGCTGGAAAAATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
*
180146004 AAGTGTGCATGCTGGAAATA
65 AAGTGTGCATGCTCGAAATA
*
180146024 TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTGAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACT-AGTGTGCATGCTGGAAAAATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
*
180146089 AAGTGTGCGA-GCTCGAAGGGTA
65 AAGTGTGC-ATGCTCGAA--ATA
180146111 TGGCACT-GTGTG
1 TGGCACTAGTGTG
180146123 TGCGGGCTTA
Statistics
Matches: 92, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
85 82 0.89
86 1 0.01
87 9 0.10
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (84 bp):
TGGCACTAGTGTGCATGCTGGAAAAATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTA
AGTGTGCATGCTCGAAATA
Found at i:180146125 original size:58 final size:58
Alignment explanation
Indices: 180145939--180146096 Score: 284
Period size: 56 Copynumber: 2.8 Consensus size: 58
180145929 GTGACGAGAT
*
180145939 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAAATA
180145997 TGGCACTAAGTGTGCATGCTGG-AA-ATATGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAAATA
*
180146053 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGC
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGC
180146097 GAGCTCGAAG
Statistics
Matches: 96, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
56 52 0.54
57 4 0.04
58 40 0.42
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.27
Consensus pattern (58 bp):
TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:180149230 original size:27 final size:27
Alignment explanation
Indices: 180149100--180149230 Score: 190
Period size: 27 Copynumber: 4.9 Consensus size: 27
180149090 ATTACCAAAG
* *
180149100 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
180149127 TACCTTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
180149154 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
180149181 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
180149208 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
180149231 AAAATACCCT
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:180149230 original size:54 final size:54
Alignment explanation
Indices: 180149100--180149257 Score: 201
Period size: 54 Copynumber: 2.9 Consensus size: 54
180149090 ATTACCAAAG
*
180149100 TACCCTCGATTTATAGAATTACCGTTTTACCTTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTTTACCTTCAATTTACAGAATTACCGTTT
* *
180149154 TACCCTCGATTTATAGAATTACTGTTTTACCCTT-GATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTTTA-CCTTCAATTTACAGAATTACCGTTT
* * **** * *
180149208 TACCCTCGATTTACAAAATTACTAAAATACCCTCAATTTACAAAATTACC
1 TACCCTCGATTTATAGAATTACTGTTTTACCTTCAATTTACAGAATTACC
180149258 AAAATACCAT
Statistics
Matches: 89, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
53 3 0.03
54 82 0.92
55 4 0.04
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACTGTTTTACCTTCAATTTACAGAATTACCGTTT
Found at i:180149238 original size:27 final size:27
Alignment explanation
Indices: 180149208--180149615 Score: 389
Period size: 27 Copynumber: 15.2 Consensus size: 27
180149198 ATTACTGTTT
** *
180149208 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* **
180149235 TACCCTCAATTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* **
180149262 TACCATCGATCAGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* *
180149289 TACCCT-AATCTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * * *
180149315 TACCCTTGGTTTGTAAAATTATCGAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
180149342 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * * *
180149369 TACCCT-GGTCTGTAAAATTTCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
180149395 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAA
* * *
180149422 TACCCTAG-TTTGTAAAGTTACCAATA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * * *
180149448 TACCATTGGTTTGTAAAATTACCGAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* *
180149475 TACCCTCAATTTGTTAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* *
180149502 TACCC-CTAGTTTGTAAAGTTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* *
180149529 TACCACT-GGTTTGTAAAATTACCGAAA
1 TACC-CTCGATTTGTAAAATTACCAAAA
*
180149556 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
** *
180149583 TACCC-CTGATTTACAAAATTACAAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAA
180149610 TACCCT
1 TACCCT
180149616 TGACTTTCTA
Statistics
Matches: 313, Mismatches: 57, Indels: 21
0.80 0.15 0.05
Matches are distributed among these distances:
26 71 0.23
27 241 0.77
28 1 0.00
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:180149239 original size:81 final size:81
Alignment explanation
Indices: 180149100--180149256 Score: 188
Period size: 81 Copynumber: 1.9 Consensus size: 81
180149090 ATTACCAAAG
* * * **** *
180149100 TACCCTCGATTTATAGAATTACCGTTTTACCTTCAATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAATACCCTCAATT
* *
180149165 TATAGAATTACTGTTT
66 TACAAAATTACTGTTT
* * * *
180149181 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTCAATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAATACCCTCAATT
180149246 TACAAAATTAC
66 TACAAAATTAC
180149257 CAAAATACCA
Statistics
Matches: 62, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 62 1.00
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAATACCCTCAATT
TACAAAATTACTGTTT
Found at i:180149333 original size:80 final size:81
Alignment explanation
Indices: 180149222--180149613 Score: 427
Period size: 80 Copynumber: 4.9 Consensus size: 81
180149212 CTCGATTTAC
* ** * **
180149222 AAAATTACTAAAATACCCTCAATTTACAAAATTACCAAAATACCATCGATCAGTAAAATTACCAA
1 AAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAA
**
180149287 AATACC-CTAATCTGT
66 AATACCACTGGTCTGT
*** * * *
180149302 AAAATTACCAAAATACCCTTGGTTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAA
180149367 AATACC-CTGGTCTGT
66 AATACCACTGGTCTGT
* * ** * *
180149382 AAAATTTCTAAAATACCC-CTGGTTTGTAAAATTACCAAAATACCCTAG-TTTGTAAAGTTACCA
1 AAAATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACCA
* * *
180149445 ATATACCATTGGTTTGT
65 AAATACCACTGGTCTGT
* * * *
180149462 AAAATTACCGAAATACCCTCAATTTGTTAAATTACCAAAATACCC-CTAGTTTGTAAAGTTACCA
1 AAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCTCGA-TTTGTAAAATTACCA
*
180149526 AAATACCACTGGTTTGT
65 AAATACCACTGGTCTGT
* ** *
180149543 AAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCC-CTGATTTACAAAATTACAA
1 AAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCTC-GATTTGTAAAATTACCA
180149607 AAATACC
65 AAATACC
180149614 CTTGACTTTC
Statistics
Matches: 265, Mismatches: 41, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
79 20 0.08
80 150 0.57
81 94 0.35
82 1 0.00
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAA
AATACCACTGGTCTGT
Found at i:180149666 original size:27 final size:27
Alignment explanation
Indices: 180149217--180149677 Score: 157
Period size: 27 Copynumber: 17.1 Consensus size: 27
180149207 TTACCCTCGA
* *
180149217 TTTACAAAATTACTAAAATACCCTCAA
1 TTTACAAAATTACTAAAATACCCTTAG
* * *
180149244 TTTACAAAATTACCAAAATA-CCATCG
1 TTTACAAAATTACTAAAATACCCTTAG
* * * * *
180149270 ATCAGTAAAATTACCAAAATACCC-TAA
1 TTTA-CAAAATTACTAAAATACCCTTAG
* ** * *
180149297 TCTGTAAAATTACCAAAATACCCTTGG
1 TTTACAAAATTACTAAAATACCCTTAG
** * * *
180149324 TTTGTAAAATTA-TCGAAATACCCTCAA
1 TTTACAAAATTACT-AAAATACCCTTAG
** * *
180149351 TTTGTAAAATTACCAAAATACCC-TGG
1 TTTACAAAATTACTAAAATACCCTTAG
* ** * * *
180149377 TCTGTAAAATTTCTAAAATACCCCTGG
1 TTTACAAAATTACTAAAATACCCTTAG
** *
180149404 TTTGTAAAATTACCAAAATACCC-TAG
1 TTTACAAAATTACTAAAATACCCTTAG
** * * * * *
180149430 TTTGTAAAGTTACCAATATACCATTGG
1 TTTACAAAATTACTAAAATACCCTTAG
** ** * *
180149457 TTTGTAAAATTACCGAAATACCCTCAA
1 TTTACAAAATTACTAAAATACCCTTAG
*** * *
180149484 TTTGTTAAATTACCAAAATACCCCTAG
1 TTTACAAAATTACTAAAATACCCTTAG
** * * *
180149511 TTTGTAAAGTTACCAAAATACCAC-TGG
1 TTTACAAAATTACTAAAATACC-CTTAG
** ** * *
180149538 TTTGTAAAATTACCGAAATACCCTCAA
1 TTTACAAAATTACTAAAATACCCTTAG
** * *
180149565 TTTGTAAAATTACCAAAATACCCCT-G
1 TTTACAAAATTACTAAAATACCCTTAG
* *
180149591 ATTTACAAAATTACAAAAATACCCTTGAC
1 -TTTACAAAATTACTAAAATACCCTT-AG
*
180149620 TTT-CTAAAAATTA-TAGAAATACCATTAG
1 TTTAC--AAAATTACTA-AAATACCCTTAG
*
180149648 TTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACTAAAATACCCTTAG
180149675 TTT
1 TTT
180149678 GTAGATATAC
Statistics
Matches: 345, Mismatches: 72, Indels: 34
0.76 0.16 0.08
Matches are distributed among these distances:
26 66 0.19
27 249 0.72
28 13 0.04
29 17 0.05
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
TTTACAAAATTACTAAAATACCCTTAG
Found at i:180149773 original size:27 final size:27
Alignment explanation
Indices: 180149694--180149795 Score: 82
Period size: 27 Copynumber: 3.8 Consensus size: 27
180149684 ATACCAAAAC
* * **
180149694 ACCCTTGTAGGATGAAATGACTACAAT
1 ACCCTTGTAGGGTAAAATGACTGTAAT
** * *
180149721 ACCCCTAATA-GGTAAAAAGACCGTAA-
1 A-CCCTTGTAGGGTAAAATGACTGTAAT
*
180149747 AGCCCTTGTAGGGTAAAGTGACTGTAAT
1 A-CCCTTGTAGGGTAAAATGACTGTAAT
*
180149775 ACCCTTGTATGGTAAAATGAC
1 ACCCTTGTAGGGTAAAATGAC
180149796 GAATATGCCC
Statistics
Matches: 56, Mismatches: 16, Indels: 6
0.72 0.21 0.08
Matches are distributed among these distances:
26 7 0.12
27 42 0.75
28 7 0.12
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
ACCCTTGTAGGGTAAAATGACTGTAAT
Found at i:180150505 original size:20 final size:20
Alignment explanation
Indices: 180150471--180150546 Score: 113
Period size: 20 Copynumber: 3.9 Consensus size: 20
180150461 GATACGTGGG
180150471 GTATGATAT--ACATGAT-T
1 GTATGATATGCACATGATAT
180150488 GATATGATATGCACATGATAT
1 G-TATGATATGCACATGATAT
180150509 GTATGATATGCACATGATAT
1 GTATGATATGCACATGATAT
*
180150529 GTATGAAATGCACATGAT
1 GTATGATATGCACATGAT
180150547 GAATTCATAA
Statistics
Matches: 54, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
17 1 0.02
18 8 0.15
20 43 0.80
21 2 0.04
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.34
Consensus pattern (20 bp):
GTATGATATGCACATGATAT
Found at i:180150507 original size:11 final size:11
Alignment explanation
Indices: 180150491--180150546 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
180150481 CATGATTGAT
180150491 ATGATATGCAC
1 ATGATATGCAC
*
180150502 ATGATATG--T
1 ATGATATGCAC
180150511 ATGATATGCAC
1 ATGATATGCAC
*
180150522 ATGATATG--T
1 ATGATATGCAC
*
180150531 ATGAAATGCAC
1 ATGATATGCAC
180150542 ATGAT
1 ATGAT
180150547 GAATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:180150630 original size:26 final size:26
Alignment explanation
Indices: 180150596--180150770 Score: 255
Period size: 26 Copynumber: 6.8 Consensus size: 26
180150586 GAGGAAGTGC
* **
180150596 AAAACGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
180150622 AGAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
180150648 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
180150674 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
***
180150700 AAAAGGGCTTATGCCCCAGTTTATTA
1 AAAAGGGCTTATGCCCCAGTTTACCG
180150726 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
180150751 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
180150771 ATTAAAGAGG
Statistics
Matches: 134, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 32 0.24
26 102 0.76
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:180150680 original size:52 final size:52
Alignment explanation
Indices: 180150596--180150770 Score: 309
Period size: 52 Copynumber: 3.4 Consensus size: 52
180150586 GAGGAAGTGC
* *
180150596 AAAACGGCTTATGCCCCAGTTTATTGAGAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
180150648 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
180150700 AAAAGGGCTTATGCCCCAGTTTATTAAAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
180150751 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
180150771 ATTAAAGAGG
Statistics
Matches: 120, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
50 10 0.08
51 25 0.21
52 85 0.71
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:180150974 original size:42 final size:42
Alignment explanation
Indices: 180150915--180151006 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
180150905 TAGTCTCCCC
*
180150915 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
180150957 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
180150999 AAATGGGC
1 AAATGGGC
180151007 CTATGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:180151068 original size:31 final size:31
Alignment explanation
Indices: 180151030--180151106 Score: 127
Period size: 31 Copynumber: 2.5 Consensus size: 31
180151020 CGTTTACAAT
*
180151030 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
180151061 AAAGGCTTCGGCCCATTGATTTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
180151092 AAAGGCTTCGGCCCA
1 AAAGGCTTCGGCCCA
180151107 ATAACCGTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:180154414 original size:20 final size:21
Alignment explanation
Indices: 180154375--180154421 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
180154365 CCAGATATGG
180154375 CCATGTGCTCATCCCACATGC
1 CCATGTGCTCATCCCACATGC
* *
180154396 CCATGTG-TGATCTCACATGC
1 CCATGTGCTCATCCCACATGC
180154416 CCATGT
1 CCATGT
180154422 ATATGGGCCG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.19, C:0.36, G:0.17, T:0.28
Consensus pattern (21 bp):
CCATGTGCTCATCCCACATGC
Found at i:180156669 original size:40 final size:40
Alignment explanation
Indices: 180156606--180156776 Score: 267
Period size: 40 Copynumber: 4.3 Consensus size: 40
180156596 ATTCGGATTG
*
180156606 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
*
180156645 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
180156685 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* *
180156725 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CT
*
180156765 ATATCC-GGCTAA
1 ATAACCGGGCTAA
180156777 ACCCCAAGGT
Statistics
Matches: 124, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
39 21 0.17
40 103 0.83
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
Found at i:180159082 original size:28 final size:28
Alignment explanation
Indices: 180159022--180159082 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
180159012 AATGACCAAA
*
180159022 ATACCCTTAAAGGGTAAAAATTACTATT
1 ATACCCTTAAAGGGTAAAAATGACTATT
* * ** *
180159050 CTACCCTTAATGGGTGGAAATGACTGTT
1 ATACCCTTAAAGGGTAAAAATGACTATT
180159078 ATACC
1 ATACC
180159083 TTAGAGGTAG
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.31
Consensus pattern (28 bp):
ATACCCTTAAAGGGTAAAAATGACTATT
Found at i:180159452 original size:28 final size:27
Alignment explanation
Indices: 180159420--180159481 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 27
180159410 ATTGTGATTA
*
180159420 TACTGTTTTGGGCATAGGCCCACACTG
1 TACTGTTTAGGGCATAGGCCCACACTG
** * *
180159447 TTACTGCATAGGGCTTAGGCCCAGACTG
1 -TACTGTTTAGGGCATAGGCCCACACTG
180159475 TACTGTT
1 TACTGTT
180159482 AATGAATAGG
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.19, C:0.24, G:0.26, T:0.31
Consensus pattern (27 bp):
TACTGTTTAGGGCATAGGCCCACACTG
Found at i:180159491 original size:33 final size:34
Alignment explanation
Indices: 180159443--180159514 Score: 92
Period size: 33 Copynumber: 2.1 Consensus size: 34
180159433 ATAGGCCCAC
* * * *
180159443 ACTGTTACTGCATAGGGCTTAGGCCCAGACTG-T
1 ACTGTTAATGAATAGGGCTCAGGCCCAGACCGTT
*
180159476 ACTGTTAATGAATAGGGCTCAGGGCCAGACCGTT
1 ACTGTTAATGAATAGGGCTCAGGCCCAGACCGTT
180159510 ACTGT
1 ACTGT
180159515 ATGCACTGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
33 27 0.82
34 6 0.18
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (34 bp):
ACTGTTAATGAATAGGGCTCAGGCCCAGACCGTT
Found at i:180164322 original size:42 final size:42
Alignment explanation
Indices: 180164258--180164355 Score: 110
Period size: 41 Copynumber: 2.3 Consensus size: 42
180164248 ATATCCCATA
* * *
180164258 TATGGTCTTACATGGGATCTCATATCGATGCCAATAGCCC-AGC
1 TATGGTCTTACA-CGGATCTCATATCAATGCC-ATAGCCCAAAC
* * *
180164301 TATGGTCTTACACGGTTCTCATATCAATGTCATATCCCAAAC
1 TATGGTCTTACACGGATCTCATATCAATGCCATAGCCCAAAC
180164343 -ATGGTCTTACACG
1 TATGGTCTTACACG
180164356 AAATCTAATA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
41 19 0.40
42 17 0.35
43 12 0.25
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.31
Consensus pattern (42 bp):
TATGGTCTTACACGGATCTCATATCAATGCCATAGCCCAAAC
Found at i:180169312 original size:32 final size:32
Alignment explanation
Indices: 180169257--180169349 Score: 107
Period size: 32 Copynumber: 2.9 Consensus size: 32
180169247 GTATGAGACG
* *
180169257 GTGTAGGCCACAAGGACAGGGCAATTTGGGCA
1 GTGTAGGCCACAAGGGCATGGCAATTTGGGCA
* *
180169289 GTGTGGGCCACACGGGCATGGCAATTTGGGCCA
1 GTGTAGGCCACAAGGGCATGGCAATTTGGG-CA
* * *
180169322 -TATAGGCCACATGAGCATGGCAATTTGG
1 GTGTAGGCCACAAGGGCATGGCAATTTGG
180169350 ACCGTGTGGG
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
32 50 0.96
33 2 0.04
ACGTcount: A:0.25, C:0.20, G:0.35, T:0.19
Consensus pattern (32 bp):
GTGTAGGCCACAAGGGCATGGCAATTTGGGCA
Found at i:180170587 original size:195 final size:196
Alignment explanation
Indices: 180170273--180170672 Score: 757
Period size: 195 Copynumber: 2.0 Consensus size: 196
180170263 ACTATGTCGA
180170273 AATAAGGTTTTGATTTTTAAGAAAAGTAATGATTTTTTCTAAAGAAAACTTGGAATTTGAAAAAA
1 AATAAGGTTTTGATTTTTAAGAAAAGTAATGATTTTTTCTAAAGAAAACTTGGAATTTGAAAAAA
180170338 AAATCCTACCATCGTACAGGACGGCTCCACCACTAGAGGCTGGTGAGCTGTTGGGCTCTCTAGTG
66 AAATCCTACCATCGTACAGGACGGCTCCACCACTAGAGGCTGGTGAGCTGTTGGGCTCTCTAGTG
*
180170403 GTGGAGCCATGTCCAACATAGAAGTTGGAAGAGAAAGAGGAAGACACTTTTTTTTTTTTTGAAAA
131 GTGGAGCCATGGCCAACATAGAAGTTGGAAGAGAAAGAGGAAGACACTTTTTTTTTTTTTGAAAA
180170468 C
196 C
*
180170469 AATAAGGTTTTGATTTTTATGAAAAGTAATGATTTTTTCTAAAGAAAACTTGGAATTTG-AAAAA
1 AATAAGGTTTTGATTTTTAAGAAAAGTAATGATTTTTTCTAAAGAAAACTTGGAATTTGAAAAAA
*
180170533 AAATCCTACCATCGTACAGGACGGCTCCACCACTAGAGGCTGGTGAGCTGTTGGGCTTTCTAGTG
66 AAATCCTACCATCGTACAGGACGGCTCCACCACTAGAGGCTGGTGAGCTGTTGGGCTCTCTAGTG
180170598 GTGGAGCCATGGCCAACATAGAAGTTGGAAGAGAAAGAGGAAGACACTTTTTTTTTTTTTGAAAA
131 GTGGAGCCATGGCCAACATAGAAGTTGGAAGAGAAAGAGGAAGACACTTTTTTTTTTTTTGAAAA
180170663 C
196 C
*
180170664 AATGAGGTT
1 AATAAGGTT
180170673 AAAATAAAAG
Statistics
Matches: 200, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
195 142 0.71
196 58 0.29
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (196 bp):
AATAAGGTTTTGATTTTTAAGAAAAGTAATGATTTTTTCTAAAGAAAACTTGGAATTTGAAAAAA
AAATCCTACCATCGTACAGGACGGCTCCACCACTAGAGGCTGGTGAGCTGTTGGGCTCTCTAGTG
GTGGAGCCATGGCCAACATAGAAGTTGGAAGAGAAAGAGGAAGACACTTTTTTTTTTTTTGAAAA
C
Found at i:180173482 original size:31 final size:31
Alignment explanation
Indices: 180173439--180173503 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
180173429 GAAGATGAGT
* * *
180173439 TAAAGGGGATATGGCAATCATGGGACGAGGC
1 TAAAGGGAATATGGAAATCATGGGACAAGGC
180173470 TAAAGGGAATATGGAAATCATGGGACAAGGC
1 TAAAGGGAATATGGAAATCATGGGACAAGGC
180173501 TAA
1 TAA
180173504 GAAAATGCGC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.11, G:0.34, T:0.17
Consensus pattern (31 bp):
TAAAGGGAATATGGAAATCATGGGACAAGGC
Found at i:180177049 original size:28 final size:28
Alignment explanation
Indices: 180176988--180177085 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
180176978 TCACAAATTG
** * *
180176988 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
180177017 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
180177045 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
180177073 GCACTAAGTGTGC
1 GCACTAAGTGTGC
180177086 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:180184712 original size:28 final size:28
Alignment explanation
Indices: 180184651--180184748 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
180184641 TCACAAATTG
** * *
180184651 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
180184680 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
180184708 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
180184736 GCACTAAGTGTGC
1 GCACTAAGTGTGC
180184749 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:180192329 original size:40 final size:40
Alignment explanation
Indices: 180192280--180192374 Score: 172
Period size: 40 Copynumber: 2.4 Consensus size: 40
180192270 CGGATGTAAC
*
180192280 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
180192320 AACCCGCACGAATGCCTTCGGGGCTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
180192360 AACCCGCACGAATGC
1 AACCCGCACGAATGC
180192375 TATGCACATA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:180197392 original size:27 final size:26
Alignment explanation
Indices: 180197344--180197403 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
180197334 GCGAGGCTGC
*
180197344 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
180197371 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
180197397 TAGATAT
1 CAGATAT
180197404 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Done.