Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 578 of 770
Found at i:180197489 original size:27 final size:26
Alignment explanation
Indices: 180197442--180197492 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
180197432 CAAGGCTGCC
*
180197442 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
180197468 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
180197493 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:180199574 original size:27 final size:27
Alignment explanation
Indices: 180199522--180199720 Score: 227
Period size: 27 Copynumber: 7.4 Consensus size: 27
180199512 GGGGCATTTC
* ** *
180199522 AGTCATTTTACCACATAAAAGAAAAAT
1 AGTCATTTTACCTCATAAGGGCAAAAT
** *
180199549 AGTCATTTTACCTCACGAGGGCAAAAC
1 AGTCATTTTACCTCATAAGGGCAAAAT
* * *
180199576 AGTCATTTTACCTTATTAGGGAAAAAT
1 AGTCATTTTACCTCATAAGGGCAAAAT
* *
180199603 AGCCATTTTACCTTATAAGGGCAAAAT
1 AGTCATTTTACCTCATAAGGGCAAAAT
* *
180199630 AATCATTTTACCTCATGAGGGCAAAAT
1 AGTCATTTTACCTCATAAGGGCAAAAT
* * *
180199657 AGTTATTTTACCTCAAAAGGGCAAAAC
1 AGTCATTTTACCTCATAAGGGCAAAAT
* *
180199684 AGTCATTTCACCTCACAAGGGCAAAAT
1 AGTCATTTTACCTCATAAGGGCAAAAT
180199711 AGTCATTTTA
1 AGTCATTTTA
180199721 TCAATTAGGG
Statistics
Matches: 143, Mismatches: 29, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 143 1.00
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.29
Consensus pattern (27 bp):
AGTCATTTTACCTCATAAGGGCAAAAT
Found at i:180201158 original size:10 final size:10
Alignment explanation
Indices: 180201143--180201167 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
180201133 TCAAGACAAA
180201143 ACATTTTCAC
1 ACATTTTCAC
180201153 ACATTTTCAC
1 ACATTTTCAC
180201163 ACATT
1 ACATT
180201168 CAAACATGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.28, G:0.00, T:0.40
Consensus pattern (10 bp):
ACATTTTCAC
Found at i:180211084 original size:14 final size:15
Alignment explanation
Indices: 180211065--180211094 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
180211055 ATATTTAACT
180211065 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
180211079 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
180211094 T
1 T
180211095 TTTGATATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:180212138 original size:45 final size:45
Alignment explanation
Indices: 180212074--180212200 Score: 175
Period size: 45 Copynumber: 2.8 Consensus size: 45
180212064 ATGGTTGAAG
* *
180212074 GATGCCATGGTGTTTTTCAACCATGGTCTTATTCATTCCTGACTA
1 GATGCAATGGTGTCTTTCAACCATGGTCTTATTCATTCCTGACTA
* ** *
180212119 GATGCTATGGTGTCTTTCAACCATGGTCTTATTCATTCCTGTTTT
1 GATGCAATGGTGTCTTTCAACCATGGTCTTATTCATTCCTGACTA
*
180212164 GATGCCAAT-GTGTCTTTCTACCATGGTCTTATTCATT
1 GATG-CAATGGTGTCTTTCAACCATGGTCTTATTCATT
180212201 TTACGTCGTG
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
45 71 0.96
46 3 0.04
ACGTcount: A:0.18, C:0.21, G:0.17, T:0.43
Consensus pattern (45 bp):
GATGCAATGGTGTCTTTCAACCATGGTCTTATTCATTCCTGACTA
Found at i:180212303 original size:45 final size:45
Alignment explanation
Indices: 180212254--180212360 Score: 119
Period size: 45 Copynumber: 2.4 Consensus size: 45
180212244 GTCTGATCCA
** * *
180212254 TGATGCCATTGCATCTTTCAACTATGGTCTTACTT-GTT-AGAATCG
1 TGATGCCATAACATCTTTCAACTATAGTCTTA-TTCATTGA-AATCG
* *
180212299 TGATGCCATAACATCTTTCAGCTCTAGTCTTATTCATTGAAATCG
1 TGATGCCATAACATCTTTCAACTATAGTCTTATTCATTGAAATCG
*
180212344 TGATGCCATAACGTCTT
1 TGATGCCATAACATCTT
180212361 CCAGATATTG
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
44 2 0.04
45 50 0.94
46 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.38
Consensus pattern (45 bp):
TGATGCCATAACATCTTTCAACTATAGTCTTATTCATTGAAATCG
Found at i:180213738 original size:77 final size:77
Alignment explanation
Indices: 180213651--180213806 Score: 285
Period size: 77 Copynumber: 2.0 Consensus size: 77
180213641 TCTGAAACCA
*
180213651 CCATTTTCGACACTACTAAAAAATGGGCTATTACAGCCCTCCCCTTTTTAAGAAAATTTCATCAT
1 CCATTTTCGACACTACTAAAAAATAGGCTATTACAGCCCTCCCCTTTTTAAGAAAATTTCATCAT
*
180213716 CGAAATCTCTCT
66 CAAAATCTCTCT
*
180213728 CCATTTTCGACACTACTAAAAAATAGGCTATTACAGCTCTCCCCTTTTTAAGAAAATTTCATCAT
1 CCATTTTCGACACTACTAAAAAATAGGCTATTACAGCCCTCCCCTTTTTAAGAAAATTTCATCAT
180213793 CAAAATCTCTCT
66 CAAAATCTCTCT
180213805 CC
1 CC
180213807 TATAAATAGT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 76 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.33
Consensus pattern (77 bp):
CCATTTTCGACACTACTAAAAAATAGGCTATTACAGCCCTCCCCTTTTTAAGAAAATTTCATCAT
CAAAATCTCTCT
Found at i:180220498 original size:29 final size:29
Alignment explanation
Indices: 180220465--180220596 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
180220455 GTGACGAGAT
*
180220465 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
180220494 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
180220523 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
** * **
180220552 TAACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
180220581 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
180220597 AGCTCGAAGG
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:180232174 original size:40 final size:39
Alignment explanation
Indices: 180232129--180232257 Score: 145
Period size: 40 Copynumber: 3.3 Consensus size: 39
180232119 CGGAATACAA
180232129 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * *
180232169 CCGGATAGAACGACTCCTACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTGC-ACGAATGCCTTCGGGTCTTAGC
* * * *
180232209 CCGGATGTAGCCGCTAGCAC-AATTGCCTTC-GGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
180232248 CCGGATATAA
1 CCGGATATAA
180232258 TTTCCAGCAA
Statistics
Matches: 74, Mismatches: 12, Indels: 7
0.80 0.13 0.08
Matches are distributed among these distances:
39 20 0.27
40 53 0.72
41 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:180235511 original size:16 final size:17
Alignment explanation
Indices: 180235490--180235526 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
180235480 TGTAATGCCC
180235490 CAAAAATCCC-AAAGCT
1 CAAAAATCCCGAAAGCT
*
180235506 CAAAAATCCCGAAATCT
1 CAAAAATCCCGAAAGCT
180235523 CAAA
1 CAAA
180235527 TTTTATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.51, C:0.30, G:0.05, T:0.14
Consensus pattern (17 bp):
CAAAAATCCCGAAAGCT
Found at i:180237043 original size:28 final size:28
Alignment explanation
Indices: 180237007--180237099 Score: 98
Period size: 28 Copynumber: 3.3 Consensus size: 28
180236997 TAAATATGAT
*
180237007 TTGGGCCTAGT-GGCCATATGAATGTGA
1 TTGGGCCTAATAGGCCATATGAATGTGA
* *
180237034 TTTGGGCCTAATAGGCCACATAAATGTGA
1 -TTGGGCCTAATAGGCCATATGAATGTGA
* * * * *
180237063 ATGGGCCTAATGGGCCATTTGAAAGAGA
1 TTGGGCCTAATAGGCCATATGAATGTGA
180237091 TTGGGCCTA
1 TTGGGCCTA
180237100 GTCGGTCATA
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
28 39 0.74
29 14 0.26
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (28 bp):
TTGGGCCTAATAGGCCATATGAATGTGA
Found at i:180237060 original size:29 final size:28
Alignment explanation
Indices: 180236997--180237075 Score: 97
Period size: 28 Copynumber: 2.8 Consensus size: 28
180236987 AGCATGATTG
* * *
180236997 TAAATATGATTTGGGCCTAGTGGCCATA
1 TAAATGTGATTTGGGCCTAATGGCCACA
*
180237025 TGAATGTGATTTGGGCCTAATAGGCCACA
1 TAAATGTGATTTGGGCCTAAT-GGCCACA
*
180237054 TAAATGTGA-ATGGGCCTAATGG
1 TAAATGTGATTTGGGCCTAATGG
180237076 GCCATTTGAA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
27 2 0.05
28 28 0.64
29 14 0.32
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
TAAATGTGATTTGGGCCTAATGGCCACA
Found at i:180242725 original size:124 final size:124
Alignment explanation
Indices: 180242504--180242727 Score: 324
Period size: 124 Copynumber: 1.8 Consensus size: 124
180242494 AATTATGTGT
* * * * * * *
180242504 AATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGGG
1 AATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGGG
* **
180242569 CTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGAA
66 CTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGAA
*
180242628 AATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGGG
1 AATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGGG
*
180242693 CTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 CTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
180242728 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 84 0.97
ACGTcount: A:0.30, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGGG
CTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGAA
Found at i:180242850 original size:40 final size:40
Alignment explanation
Indices: 180242722--180242852 Score: 149
Period size: 40 Copynumber: 3.2 Consensus size: 40
180242712 TTGCTGGAAA
* * * *
180242722 TTATATCCGGGTTAAGACCCGAAGGAAAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGG--CATTCGTGCGAGTGG
* * *
180242763 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
180242803 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
180242843 TTATATCCGG
1 TTATATCCGG
180242853 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 4 0.05
40 50 0.66
41 22 0.29
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:180253395 original size:5 final size:5
Alignment explanation
Indices: 180253385--180253418 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
180253375 TGATGATGAA
*
180253385 AAAAG AAAAG AGAAAG AAAAG AAAAA AAAAG AAA
1 AAAAG AAAAG A-AAAG AAAAG AAAAG AAAAG AAA
180253419 GGCTCTTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:180254725 original size:40 final size:40
Alignment explanation
Indices: 180254669--180254885 Score: 239
Period size: 40 Copynumber: 5.5 Consensus size: 40
180254659 GGATATTTGG
* * **
180254669 ATCCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGGCTAGT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-T
*
180254710 -TCCGGGCTAAGTCCCGAAGACATTTGTGCGAGTTACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
*
180254749 ATCCGGGCTAAGTCCC---GGCATTTGTGTGAGTTACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
* * * *
180254786 ATCCGGGCTAAATCCCAAAGGCATTGGAGCGAGTTACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
* * *
180254826 ATCCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAT
* *
180254866 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
180254886 TACTTGGCTT
Statistics
Matches: 153, Mismatches: 18, Indels: 12
0.84 0.10 0.07
Matches are distributed among these distances:
37 34 0.22
39 16 0.10
40 103 0.67
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
Found at i:180262811 original size:40 final size:40
Alignment explanation
Indices: 180262716--180262932 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
180262706 TGGATGATAA
* * *
180262716 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
180262756 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
180262795 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
180262835 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
180262875 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
180262915 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
180262933 TACTTGGCTT
Statistics
Matches: 164, Mismatches: 10, Indels: 7
0.91 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 49 0.30
40 114 0.70
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:180263866 original size:15 final size:15
Alignment explanation
Indices: 180263842--180263876 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
180263832 AATTCATTAT
180263842 ATTA-ACCAGAGATA
1 ATTAGACCAGAGATA
180263856 ATTAGACCAGAGATA
1 ATTAGACCAGAGATA
180263871 ATTAGA
1 ATTAGA
180263877 AGTATCATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.49, C:0.11, G:0.17, T:0.23
Consensus pattern (15 bp):
ATTAGACCAGAGATA
Found at i:180273635 original size:29 final size:29
Alignment explanation
Indices: 180273600--180273673 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
180273590 GTTGTGAGAT
* *
180273600 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
180273629 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
180273658 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
180273674 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:180276644 original size:40 final size:39
Alignment explanation
Indices: 180276587--180276769 Score: 239
Period size: 40 Copynumber: 4.7 Consensus size: 39
180276577 TCGAATGATG
* *
180276587 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
*
180276627 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
180276666 TCCGGGCTAAG--CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
180276704 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
180276744 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
180276770 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
37 24 0.19
38 12 0.09
39 12 0.09
40 73 0.57
41 8 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:180276721 original size:77 final size:80
Alignment explanation
Indices: 180276587--180276769 Score: 241
Period size: 77 Copynumber: 2.3 Consensus size: 80
180276577 TCGAATGATG
*
180276587 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
180276651 TGTGCGAGTTACTA-A
65 TGTGCGAGTTACTATA
* * **
180276666 TCCGGGCTAAG-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
180276728 TGTGCGAGTTACTATA
65 TGTGCGAGTTACTATA
* *
180276744 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
180276770 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 7, Indels: 9
0.85 0.06 0.08
Matches are distributed among these distances:
76 1 0.01
77 50 0.54
78 17 0.18
79 11 0.12
80 13 0.14
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:180284801 original size:40 final size:39
Alignment explanation
Indices: 180284614--180284794 Score: 177
Period size: 40 Copynumber: 4.5 Consensus size: 39
180284604 TGATATCGGA
* * * *
180284614 GCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AACCGG
* * *
180284655 ACTAAGAT-CCGAAGGCCTTTGTGCGAGTTACTAATCCCGG
1 GCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-ACCGG
**
180284695 GCTAAG-CCCGAAGGCATGGGTGCGAGTTACTAAATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA-CCGG
* * *
180284734 GTTAGGTCCCAAAGGCATTTGTGCGAGTTACTATAACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AACCGG
*
180284774 GCTATGTCCCGAAGGCATTTG
1 GCTAAGTCCCGAAGGCATTTG
180284795 AACGAGTAGC
Statistics
Matches: 116, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
39 32 0.28
40 61 0.53
41 22 0.19
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAACCGG
Found at i:180286411 original size:40 final size:40
Alignment explanation
Indices: 180286330--180286512 Score: 280
Period size: 40 Copynumber: 4.6 Consensus size: 40
180286320 TATTCGGATG
*
180286330 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
180286371 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
180286411 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
180286451 ATATCCGAGTTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
180286491 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
180286513 TACTTGGGTT
Statistics
Matches: 132, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 12 0.09
40 94 0.71
41 26 0.20
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:180291803 original size:13 final size:13
Alignment explanation
Indices: 180291785--180291810 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
180291775 ATATTATAAT
180291785 TATTTTATGTTAA
1 TATTTTATGTTAA
180291798 TATTTTATGTTAA
1 TATTTTATGTTAA
180291811 AAATAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:180293240 original size:40 final size:40
Alignment explanation
Indices: 180293170--180293390 Score: 365
Period size: 40 Copynumber: 5.6 Consensus size: 40
180293160 TATTCGGATG
180293170 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
*
180293209 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
*
180293249 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
* *
180293289 ATATCCAGGCTAAGTCCCGAAGGCATCTGTGCTAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
* *
180293329 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
*
180293369 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
180293391 TACTTGGGTT
Statistics
Matches: 172, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 30 0.17
40 142 0.83
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
Found at i:180295333 original size:16 final size:15
Alignment explanation
Indices: 180295312--180295351 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
180295302 TCGCCCGGGC
180295312 TAAAAAAAACCAAAAA
1 TAAAAAAAA-CAAAAA
180295328 TAAAAATAAACAAAAA
1 TAAAAA-AAACAAAAA
*
180295344 CAAAAAAA
1 TAAAAAAA
180295352 TAAATTAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 2 0.09
16 17 0.77
17 3 0.14
ACGTcount: A:0.82, C:0.10, G:0.00, T:0.07
Consensus pattern (15 bp):
TAAAAAAAACAAAAA
Found at i:180295356 original size:22 final size:22
Alignment explanation
Indices: 180295312--180295355 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
180295302 TCGCCCGGGC
180295312 TAAAAAAAACCAAAAATAAAAA
1 TAAAAAAAACCAAAAATAAAAA
*
180295334 TAAACAAAAACAAAAAAATAAA
1 TAAA-AAAAAC-CAAAAATAAA
180295356 TTAAGATGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 6 0.32
24 9 0.47
ACGTcount: A:0.82, C:0.09, G:0.00, T:0.09
Consensus pattern (22 bp):
TAAAAAAAACCAAAAATAAAAA
Found at i:180296789 original size:18 final size:18
Alignment explanation
Indices: 180296741--180296790 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
180296731 TTTTTTATTA
*
180296741 TATCATTTATATTATTTG
1 TATCATTTATATTAATTG
* *
180296759 TAAT-GTTTGTATTAATTG
1 T-ATCATTTATATTAATTG
180296777 TATCATTTATATTA
1 TATCATTTATATTA
180296791 TTAATTTACT
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
17 2 0.08
18 21 0.84
19 2 0.08
ACGTcount: A:0.30, C:0.04, G:0.08, T:0.58
Consensus pattern (18 bp):
TATCATTTATATTAATTG
Found at i:180307082 original size:40 final size:40
Alignment explanation
Indices: 180307016--180307182 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
180307006 AAATTGAATG
* * *
180307016 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
180307055 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
180307095 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
180307135 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
180307175 ATATCCGG
1 ATATCCGG
180307183 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:180330839 original size:17 final size:17
Alignment explanation
Indices: 180330817--180330871 Score: 59
Period size: 17 Copynumber: 3.5 Consensus size: 17
180330807 CTGGGCTAGA
180330817 TCCTTTTTACCATCAAT
1 TCCTTTTTACCATCAAT
180330834 TCC-TTTT--CA--AGA-
1 TCCTTTTTACCATCA-AT
180330846 TCCTTTTTACCATCAAT
1 TCCTTTTTACCATCAAT
180330863 TCCTTTTTA
1 TCCTTTTTA
180330872 TGCAATTTCG
Statistics
Matches: 31, Mismatches: 0, Indels: 14
0.69 0.00 0.31
Matches are distributed among these distances:
12 4 0.13
13 5 0.16
14 2 0.06
15 2 0.06
16 5 0.16
17 13 0.42
ACGTcount: A:0.22, C:0.27, G:0.02, T:0.49
Consensus pattern (17 bp):
TCCTTTTTACCATCAAT
Found at i:180330856 original size:29 final size:29
Alignment explanation
Indices: 180330814--180330869 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
180330804 CTTCTGGGCT
180330814 AGATCCTTTTTACCATCAATTCCTTTTCA
1 AGATCCTTTTTACCATCAATTCCTTTTCA
180330843 AGATCCTTTTTACCATCAATTCCTTTT
1 AGATCCTTTTTACCATCAATTCCTTTT
180330870 TATGCAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.23, C:0.27, G:0.04, T:0.46
Consensus pattern (29 bp):
AGATCCTTTTTACCATCAATTCCTTTTCA
Found at i:180334919 original size:40 final size:40
Alignment explanation
Indices: 180334846--180335093 Score: 282
Period size: 40 Copynumber: 6.2 Consensus size: 40
180334836 CAATTGAATG
* * * * * **
180334846 ATATCCGGGCTAAGTCCCAAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
* * * *
180334886 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-CGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG-TT
* * *
180334926 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
* *
180334966 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
* *
180335006 CTATCCAGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
* * * *
180335046 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
180335086 ATATCCGG
1 ATATCCGG
180335094 TTGTATTCCG
Statistics
Matches: 177, Mismatches: 29, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
40 176 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
Found at i:180346425 original size:40 final size:40
Alignment explanation
Indices: 180346380--180346509 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
180346370 CGGAATACAA
180346380 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
180346420 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
180346460 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
180346500 CCGGATATAA
1 CCGGATATAA
180346510 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:180346524 original size:40 final size:40
Alignment explanation
Indices: 180346380--180346543 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
180346370 CGGAATACAA
* **
180346380 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
180346420 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
180346460 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
180346500 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
180346540 CCGG
1 CCGG
180346544 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:180349480 original size:42 final size:40
Alignment explanation
Indices: 180349391--180349480 Score: 90
Period size: 41 Copynumber: 2.2 Consensus size: 40
180349381 GGTGTTTGAG
* * **
180349391 GGAAAAGCGCCGCTAAAGGTCTATTTATAGTGGCGTTTAT
1 GGAAAAGCACCGCCAAAGGTCTATTTATAGCAGCGTTTAT
* * *
180349431 GGCAAAAGCACTGCCAAAGGTCTATTCTATAGCATCGTTTGT
1 GG-AAAAGCACCGCCAAAGGTCTATT-TATAGCAGCGTTTAT
180349473 AGGAAAAG
1 -GGAAAAG
180349481 TGCCGCTAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
40 2 0.05
41 20 0.50
42 16 0.40
43 2 0.05
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.27
Consensus pattern (40 bp):
GGAAAAGCACCGCCAAAGGTCTATTTATAGCAGCGTTTAT
Found at i:180349625 original size:42 final size:42
Alignment explanation
Indices: 180349455--180349632 Score: 141
Period size: 42 Copynumber: 4.2 Consensus size: 42
180349445 CAAAGGTCTA
* * * *
180349455 TTCTATAGCATCGTTTGTAGGAAAAGTGCCGCTAAA-AGTCATT
1 TTCTATAGCAGCGTTTGT-GGGAAAGCGCCGCTAAAGA-TCATG
* * *
180349498 TTCTCTAGCGGCG-TTGTGGGAAAAGCGCCAG-TAAAGGTCATG
1 TTCTATAGCAGCGTTTGTGGG-AAAGCGCC-GCTAAAGATCATG
* * * * *
180349540 TTCTTTAACGGCGCTTT-TGGGAAAGACGCCGCTAATG-TGATG
1 TTCTATAGCAGCG-TTTGTGGGAAAG-CGCCGCTAAAGATCATG
* *
180349582 TTCTTTAGCAGCGTTTGTGGGAAAGCGCTGCTAAAGATCATG
1 TTCTATAGCAGCGTTTGTGGGAAAGCGCCGCTAAAGATCATG
180349624 TTCTATAGC
1 TTCTATAGC
180349633 GGCCTTTTTT
Statistics
Matches: 109, Mismatches: 17, Indels: 19
0.75 0.12 0.13
Matches are distributed among these distances:
41 14 0.13
42 70 0.64
43 23 0.21
44 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (42 bp):
TTCTATAGCAGCGTTTGTGGGAAAGCGCCGCTAAAGATCATG
Found at i:180352058 original size:39 final size:40
Alignment explanation
Indices: 180351974--180352158 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
180351964 GCTACTCGTT
*
180351974 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
180352014 CAAATGCCTTCGGGACTTAACCCGGATTT-GTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
180352053 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
180352093 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
* *
180352134 TAAA-GCCTTCGGGACTCAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
180352159 CATCATTCGA
Statistics
Matches: 130, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
38 3 0.02
39 33 0.25
40 82 0.63
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:180360080 original size:39 final size:40
Alignment explanation
Indices: 180359999--180360180 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
180359989 ACTCGTTCAG
*
180359999 ATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAA
1 ATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAA
*
180360039 ATGCCTTCGGGACTTAACCCGGATTT-GTAACTCGCACAA
1 ATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAA
*
180360078 ATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACAA
1 ATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACAA
* * * * *
180360118 ATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCATAA
1 ATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAA
*
180360159 A-GCCTTCGGGACTCAGCCCGGA
1 ATGCCTTCGGGACTTAGCCCGGA
180360181 CATCATTCGA
Statistics
Matches: 127, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
38 3 0.02
39 33 0.26
40 79 0.62
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
ATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAA
Found at i:180368117 original size:40 final size:40
Alignment explanation
Indices: 180368056--180368236 Score: 260
Period size: 40 Copynumber: 4.5 Consensus size: 40
180368046 CATTTGAATG
180368056 ATATCCGGGCTAAG-CCGCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACC-CGAAGGCATTTGTGCGAGTTGTT
180368096 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
180368136 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
180368176 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
180368216 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
180368237 AAACTTGGGT
Statistics
Matches: 129, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 114 0.88
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:180371392 original size:80 final size:80
Alignment explanation
Indices: 180371308--180371456 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
180371298 TATGGTAACC
* * * *
180371308 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
180371372 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
180371388 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
180371453 CCGG
66 CCGG
180371457 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:180371398 original size:40 final size:38
Alignment explanation
Indices: 180371349--180371456 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
180371339 ATCACGATTT
*
180371349 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
180371389 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
180371429 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
180371457 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:180379470 original size:80 final size:80
Alignment explanation
Indices: 180379386--180379534 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
180379376 TATGGTAACC
* * * *
180379386 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
180379450 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
180379466 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
180379531 CCGG
66 CCGG
180379535 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:180379476 original size:40 final size:38
Alignment explanation
Indices: 180379427--180379534 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
180379417 ATCACGATTT
*
180379427 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
180379467 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
180379507 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
180379535 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:180387352 original size:79 final size:82
Alignment explanation
Indices: 180387212--180387396 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
180387202 TCGAATGATG
* * *
180387212 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
180387276 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
180387292 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
180387354 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
180387372 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
180387397 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:180387404 original size:40 final size:40
Alignment explanation
Indices: 180387213--180387404 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
180387203 CGAATGATGT
* * * * *
180387213 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
180387253 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
180387293 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
180387332 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
180387372 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
180387405 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:180387427 original size:79 final size:79
Alignment explanation
Indices: 180387212--180387429 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
180387202 TCGAATGATG
* * * * ** *
180387212 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
180387275 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
180387292 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
180387357 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
180387372 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
180387430 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:180395372 original size:77 final size:78
Alignment explanation
Indices: 180395240--180395385 Score: 199
Period size: 77 Copynumber: 1.9 Consensus size: 78
180395230 GAATGATGTC
* * *
180395240 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCGGACTAGGATCCGAAGGCATTCGTG
1 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCGGACTAAGATCCGAAGGCATTCGTG
180395305 CGAGATAATAAAT
66 CGAGATAATAAAT
* **
180395318 CGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCGAAGGCATTCG
1 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA-CCGGACTAAGATCCGAAGGCATTCG
180395380 TGCGAG
64 TGCGAG
180395386 TCACTATAAC
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
77 38 0.63
78 22 0.37
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (78 bp):
CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCGGACTAAGATCCGAAGGCATTCGTG
CGAGATAATAAAT
Found at i:180395416 original size:40 final size:39
Alignment explanation
Indices: 180395290--180395427 Score: 131
Period size: 39 Copynumber: 3.5 Consensus size: 39
180395280 GGACTAGGAT
* * *
180395290 CCGAAGGCATTCGTGCGAGAT-AATAAATCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAG-TCACTAAACCGGGCTTAGTC
* * *
180395328 CCGAAGGCATTTGTGCAAGTTACTAAACCCGGG-TTAAGT-
1 CCGAAGGCATTCGTGCGAGTCACTAAA-CCGGGCTT-AGTC
*
180395367 CCGAAGGCATTCGTGCGAGTCACTATAACCGGGCTTCGTC
1 CCGAAGGCATTCGTGCGAGTCACTA-AACCGGGCTTAGTC
* *
180395407 CCGAAGGCATTTGAGCGAGTC
1 CCGAAGGCATTCGTGCGAGTC
180395428 GTTATATCCG
Statistics
Matches: 82, Mismatches: 11, Indels: 12
0.78 0.10 0.11
Matches are distributed among these distances:
37 1 0.01
38 23 0.28
39 35 0.43
40 23 0.28
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTCACTAAACCGGGCTTAGTC
Found at i:180397235 original size:42 final size:43
Alignment explanation
Indices: 180397155--180397324 Score: 115
Period size: 43 Copynumber: 4.0 Consensus size: 43
180397145 AAAACTCGTA
* ***
180397155 CAATGCCGACATCCCAGATGTGGTCTTACATGTAATCAAATAT
1 CAATGCCGACATCCCAGAAGTGGTCTTACACAAAATCAAATAT
180397198 CAATGCC-ACTATCCCAGAAG-GGTCTTACACAAAATCAAATAT
1 CAATGCCGAC-ATCCCAGAAGTGGTCTTACACAAAATCAAATAT
* * **
180397240 ---GGTCGATGTCCCAGACA-TGGTCTTACACATAAATCTCAAAT-T
1 CAATGCCGACATCCCAGA-AGTGGTCTTACACA-AAA--TCAAATAT
* * * *
180397282 -GATGCCAACATCCCA-AATGTGGTCTTACACGAAATCACATAT
1 CAATGCCGACATCCCAGAA-GTGGTCTTACACAAAATCAAATAT
180397324 C
1 C
180397325 GAAATCCTAT
Statistics
Matches: 99, Mismatches: 15, Indels: 26
0.71 0.11 0.19
Matches are distributed among these distances:
39 9 0.09
40 13 0.13
41 8 0.08
42 24 0.24
43 26 0.26
44 19 0.19
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (43 bp):
CAATGCCGACATCCCAGAAGTGGTCTTACACAAAATCAAATAT
Found at i:180397699 original size:8 final size:8
Alignment explanation
Indices: 180397686--180397718 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
180397676 AAATTAACCC
180397686 TCACATTT
1 TCACATTT
180397694 TCACATTT
1 TCACATTT
180397702 TCACATTT
1 TCACATTT
*
180397710 TAACATTT
1 TCACATTT
180397718 T
1 T
180397719 AGTCCCTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.27, C:0.21, G:0.00, T:0.52
Consensus pattern (8 bp):
TCACATTT
Found at i:180399406 original size:2 final size:2
Alignment explanation
Indices: 180399399--180399428 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
180399389 GTCAATCTTC
*
180399399 AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
180399429 TCTTACCACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:180402303 original size:40 final size:40
Alignment explanation
Indices: 180402176--180402305 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
180402166 ATGCTGGAAA
* * * *
180402176 TTATATCCGGGTTAATACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * * **
180402216 CTACATCCGGGCTAAGACCTGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
180402256 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
180402296 TTATATCCGG
1 TTATATCCGG
180402306 TTATATTCCG
Statistics
Matches: 71, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 70 0.99
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:180408104 original size:25 final size:25
Alignment explanation
Indices: 180408075--180408122 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
180408065 TTATAACATG
* * *
180408075 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
180408100 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
180408123 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:180408384 original size:25 final size:24
Alignment explanation
Indices: 180408255--180408398 Score: 166
Period size: 24 Copynumber: 6.0 Consensus size: 24
180408245 GAGGAAGTGA
*
180408255 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
* *
180408279 AAAAGGGCTTATGCTCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
* *
180408303 AAAAGGGCTTACGCCCCAGGTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
180408327 -AAAGGGCTTATGCCCCAGTTATAA
1 AAAAGGGCTTATGCCCCAGTTAT-T
* *
180408351 AAAAGGGCTTTTTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
180408375 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
180408399 ATGATAAAGT
Statistics
Matches: 102, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
23 20 0.20
24 51 0.50
25 31 0.30
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:180408627 original size:31 final size:31
Alignment explanation
Indices: 180408592--180408655 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
180408582 CGTTTACAGC
* *
180408592 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCACAGTAATATGAAATATGA
**
180408623 AAAGGCTTCGGCACAGTGTTATGAAATATGA
1 AAAGGCTTCGGCACAGTAATATGAAATATGA
180408654 AA
1 AA
180408656 TATGAAGAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCACAGTAATATGAAATATGA
Found at i:180411332 original size:46 final size:46
Alignment explanation
Indices: 180411282--180411457 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
180411272 TGGTTGAGCA
180411282 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
180411328 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
180411373 CATCCGAACTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
180411421 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
180411458 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:180411438 original size:93 final size:93
Alignment explanation
Indices: 180411279--180411450 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
180411269 GGATGGTTGA
* *
180411279 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
180411344 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
180411372 GCATCCGAACTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
180411437 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
180411451 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:180418899 original size:46 final size:46
Alignment explanation
Indices: 180418849--180419023 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
180418839 TGGTTGAGCA
180418849 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
180418895 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
180418940 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
180418988 CCCGAGCTCGTTGAGTTGAGT-CGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
180419024 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 17 0.15
46 48 0.44
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:180419005 original size:93 final size:92
Alignment explanation
Indices: 180418846--180419016 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 92
180418836 GGATGGTTGA
* *
180418846 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
180418911 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGT-CGAGTTCGTGAGATGTAACTAG
*
180418939 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
180419004 TGAGTCGAGTTCG
66 TGAGTCGAGTTCG
180419017 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 8 0.11
93 67 0.89
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCGAGTTCGTGAGATGTAACTAG
Found at i:180422827 original size:29 final size:29
Alignment explanation
Indices: 180422765--180422867 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
180422755 GTGACGAGAT
* * *
180422765 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
180422794 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
180422823 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
180422852 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
180422868 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:180430812 original size:29 final size:29
Alignment explanation
Indices: 180430750--180430852 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
180430740 GTGACGAGAT
* * *
180430750 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
180430779 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
180430808 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
180430837 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
180430853 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:180434032 original size:43 final size:42
Alignment explanation
Indices: 180433972--180434079 Score: 121
Period size: 43 Copynumber: 2.5 Consensus size: 42
180433962 ATATTCATTA
180433972 TAATTTATATATT-AATTTTTATCAACT-TAAATTAGAATTAGGAT
1 TAATTTA-AT-TTCAATTTTTATCAA-TGTAAA-TAGAATTAGGAT
** **
180434016 TAATTTAATTTCAATTTTTATTTTATGTTTATAGAATTAGGAT
1 TAATTTAATTTCAATTTTTA-TCAATGTAAATAGAATTAGGAT
180434059 TAATTTAATTTCAATTTTTAT
1 TAATTTAATTTCAATTTTTAT
180434080 TTTATGTTTA
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
42 3 0.05
43 43 0.75
44 11 0.19
ACGTcount: A:0.36, C:0.04, G:0.06, T:0.54
Consensus pattern (42 bp):
TAATTTAATTTCAATTTTTATCAATGTAAATAGAATTAGGAT
Found at i:180434080 original size:43 final size:43
Alignment explanation
Indices: 180434004--180434090 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
180433994 CAACTTAAAT
180434004 TAGAATTAGGATTAATTTAATTTCAATTTTTATTTTATGTTTA
1 TAGAATTAGGATTAATTTAATTTCAATTTTTATTTTATGTTTA
180434047 TAGAATTAGGATTAATTTAATTTCAATTTTTATTTTATGTTTA
1 TAGAATTAGGATTAATTTAATTTCAATTTTTATTTTATGTTTA
180434090 T
1 T
180434091 CTTAATAATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.56
Consensus pattern (43 bp):
TAGAATTAGGATTAATTTAATTTCAATTTTTATTTTATGTTTA
Found at i:180440739 original size:40 final size:40
Alignment explanation
Indices: 180440702--180440886 Score: 164
Period size: 40 Copynumber: 4.7 Consensus size: 40
180440692 GCTACTCGTT
* *
180440702 CAAACGCCTTCGGGACAT-AGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGAC-TCAACCCGGATT-TAGTAACTCGCA
180440742 CAAATGCCTTCGGGACTCAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTCAACCCGGATTTAGTAACTCGCA
* * * *
180440782 CAAATGCCTTCGAG-CTTATCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTCAACCCGGATTTAGTAACTCGCA
* * ** * * *
180440821 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTCAACCCGGATTTAGTAAC-TCGCA
* *
180440862 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTCAACCCGGA
180440887 CATCATTCGA
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 33 0.27
40 77 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTCAACCCGGATTTAGTAACTCGCA
Found at i:180440816 original size:39 final size:40
Alignment explanation
Indices: 180440730--180440832 Score: 154
Period size: 39 Copynumber: 2.6 Consensus size: 40
180440720 AGCCCGGTTA
* *
180440730 TAGTAACTCGCACAAATGCCTTCGGGACTCAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGAGACTCAACCCGGAAT
* *
180440770 TAGTAACTCGCACAAATGCCTTCGAG-CTTATCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGAGACTCAACCCGGAAT
*
180440809 TAGTAACTCGCACGAATGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCG
180440833 GATCTTAGTC
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
39 33 0.57
40 25 0.43
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.24
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGAGACTCAACCCGGAAT
Found at i:180440846 original size:79 final size:80
Alignment explanation
Indices: 180440702--180440886 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 80
180440692 GCTACTCGTT
* * *
180440702 CAAACGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGAGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTCAACCCG
* *
180440766 GATTTAGTAAC-TCGCA
64 GATATAGTAACTTAGCA
* * * **
180440782 CAAATGCCTTCGAG-CTTATCCCGGAATTAGTAACTCGCACGAATGCCTTC-GGATCTTAGTCCG
1 CAAA-GCCTTCGAGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTCAACCCG
*
180440845 GATATAGTCACTTAGCA
64 GATATAGTAACTTAGCA
*
180440862 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGAGACTTAGCCCGGA
180440887 CATCATTCGA
Statistics
Matches: 87, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.61
80 31 0.36
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CAAAGCCTTCGAGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTCAACCCGGA
TATAGTAACTTAGCA
Found at i:180443979 original size:29 final size:29
Alignment explanation
Indices: 180443828--180443958 Score: 244
Period size: 29 Copynumber: 4.5 Consensus size: 29
180443818 GTGACGAGAT
180443828 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
180443857 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
180443886 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
180443915 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
180443944 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
180443959 GAGCTCGAAG
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 98 1.00
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:180444005 original size:87 final size:87
Alignment explanation
Indices: 180443828--180444016 Score: 229
Period size: 87 Copynumber: 2.2 Consensus size: 87
180443818 GTGACGAGAT
* *
180443828 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
* *
180443893 AAGTGTGCATGCTGGAAAAATA
66 AAGTGTGCAGGCTGGAAAAACA
* * *
180443915 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGC-ATGCTCGAAAGATATGGCAC
** * * **
180443979 TGTGTGTGCGGGCT-TAAATCGCA
65 TAAGTGTGCAGGCTGGAAA-AACA
180444002 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
180444017 GAAATCGAGT
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
86 3 0.03
87 82 0.95
88 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
AAGTGTGCAGGCTGGAAAAACA
Found at i:180454529 original size:58 final size:59
Alignment explanation
Indices: 180454383--180454572 Score: 219
Period size: 58 Copynumber: 3.3 Consensus size: 59
180454373 GTGACGAGAT
* * *
180454383 TGGCACTAAGTGTGC-ATG-TGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCATGCTGGAAATATA
*
180454440 TGGCACTAAGTGTGC-ATGCTGGAAAAATATGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCATGCTGGAAATATA
*** * ** * **
180454498 TGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCACTGTGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCATGCTGGAAAT-ATA
180454556 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
180454573 AATCGAGTAT
Statistics
Matches: 118, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
57 22 0.19
58 95 0.81
59 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (59 bp):
TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCATGCTGGAAATATA
Found at i:180454533 original size:29 final size:29
Alignment explanation
Indices: 180454383--180454512 Score: 235
Period size: 29 Copynumber: 4.5 Consensus size: 29
180454373 GTGACGAGAT
180454383 TGGCACTAAGTGTGCATG-TGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
180454411 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
180454440 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
180454469 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
180454498 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
180454513 GAGCTCGAAG
Statistics
Matches: 97, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
28 18 0.19
29 79 0.81
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:180454559 original size:87 final size:86
Alignment explanation
Indices: 180454383--180454570 Score: 218
Period size: 87 Copynumber: 2.2 Consensus size: 86
180454373 GTGACGAGAT
* *
180454383 TGGCACTAAGTGTGCATGTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTA
1 TGGCACTAAGTGTGCATGTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATGGCACTA
* *
180454448 AGTGTGCATGCTGGAAAAATA
66 AGTGTGCAGGCTGGAAAAACA
* * *
180454469 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATG-TGGAAATATATGGCACTAAGTGTGC-ATGCTCGAAAGATATGGCAC
** * * **
180454533 TGTGTGTGCGGGCT-TAAATCGCA
64 TAAGTGTGCAGGCTGGAAA-AACA
180454556 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
180454571 GAAATCGAGT
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
86 20 0.24
87 64 0.75
88 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.26
Consensus pattern (86 bp):
TGGCACTAAGTGTGCATGTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATGGCACTA
AGTGTGCAGGCTGGAAAAACA
Found at i:180455643 original size:17 final size:18
Alignment explanation
Indices: 180455601--180455649 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
180455591 AGTTGAAAAG
180455601 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
180455620 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
180455637 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
180455650 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:180456537 original size:40 final size:40
Alignment explanation
Indices: 180456471--180456637 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
180456461 AAATTGAATG
* * *
180456471 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
180456510 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
180456550 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
180456590 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
180456630 ATATCCGG
1 ATATCCGG
180456638 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:180469272 original size:27 final size:28
Alignment explanation
Indices: 180469215--180469284 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
180469205 AAACTTGTAC
*
180469215 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
180469243 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
180469270 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
180469285 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:180469295 original size:27 final size:27
Alignment explanation
Indices: 180469215--180469296 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
180469205 AAACTTGTAC
* * *
180469215 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
180469243 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
180469270 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
180469297 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:180473446 original size:32 final size:32
Alignment explanation
Indices: 180473410--180473472 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
180473400 GGCCAAAAAC
*
180473410 GGAGAAAATGGGTCAACATGGGAAATCAACAG
1 GGAGAAAATGAGTCAACATGGGAAATCAACAG
180473442 GGAGAAAATGAGTCAACATGGGAAATCAACA
1 GGAGAAAATGAGTCAACATGGGAAATCAACA
180473473 CGGGCGTGTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.46, C:0.13, G:0.29, T:0.13
Consensus pattern (32 bp):
GGAGAAAATGAGTCAACATGGGAAATCAACAG
Found at i:180473486 original size:13 final size:13
Alignment explanation
Indices: 180473470--180473495 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
180473460 TGGGAAATCA
180473470 ACACGGGCGTGTC
1 ACACGGGCGTGTC
180473483 ACACGGGCGTGTC
1 ACACGGGCGTGTC
180473496 CCTGTCGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:180480078 original size:26 final size:26
Alignment explanation
Indices: 180480043--180480094 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
180480033 TGACGTAAGA
180480043 AAACTTATTTTTATTATATTTTTATG
1 AAACTTATTTTTATTATATTTTTATG
*
180480069 AAACTTATTTTTATTATGTTTTTATG
1 AAACTTATTTTTATTATATTTTTATG
180480095 GTTTAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.62
Consensus pattern (26 bp):
AAACTTATTTTTATTATATTTTTATG
Found at i:180481435 original size:42 final size:43
Alignment explanation
Indices: 180481338--180481436 Score: 146
Period size: 43 Copynumber: 2.3 Consensus size: 43
180481328 TAGAAATGCA
* *
180481338 AGCTCGTTGAGTGGTCCGAGTTCATGATATATGTGAGAATTTG
1 AGCTTGTTGAGTGGTCCAAGTTCATGATATATGTGAGAATTTG
* * *
180481381 AACTTGTTGAGTGGTCCAAGTTCGTGATATATGTG-GCATTTG
1 AGCTTGTTGAGTGGTCCAAGTTCATGATATATGTGAGAATTTG
180481423 AGCTTGTTGAGTGG
1 AGCTTGTTGAGTGG
180481437 GAGTTTTAAC
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
42 19 0.38
43 31 0.62
ACGTcount: A:0.21, C:0.11, G:0.31, T:0.36
Consensus pattern (43 bp):
AGCTTGTTGAGTGGTCCAAGTTCATGATATATGTGAGAATTTG
Found at i:180482200 original size:33 final size:33
Alignment explanation
Indices: 180482156--180482230 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 33
180482146 AGCCCCTTTT
* *
180482156 TTTCAGAAACAGTA-TAGTCTGGGCCTGAGCCCA
1 TTTCAGTAACAG-AGTAGTCTGAGCCTGAGCCCA
*
180482189 TTTCAGTAACAGAGGTAGTCTGAGCCTTAGCCCA
1 TTTCAGTAACAGA-GTAGTCTGAGCCTGAGCCCA
180482223 TTTCAGTA
1 TTTCAGTA
180482231 TAGTATGCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
32 1 0.03
33 11 0.30
34 25 0.68
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (33 bp):
TTTCAGTAACAGAGTAGTCTGAGCCTGAGCCCA
Found at i:180488223 original size:17 final size:18
Alignment explanation
Indices: 180488181--180488229 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
180488171 AGTTGAAAAG
180488181 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
180488200 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
180488217 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
180488230 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:180489115 original size:40 final size:40
Alignment explanation
Indices: 180489049--180489199 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
180489039 AAATTGAATG
* * *
180489049 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
180489088 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
180489128 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
180489168 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
180489200 ACTGATTATA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:180496209 original size:17 final size:18
Alignment explanation
Indices: 180496167--180496215 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
180496157 AGTTGAAAAG
180496167 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
180496186 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
180496203 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
180496216 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:180497100 original size:40 final size:40
Alignment explanation
Indices: 180497034--180497184 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
180497024 AAATTGAATG
* * *
180497034 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
180497073 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
180497113 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
180497153 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
180497185 ACTGATTATA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:180505790 original size:27 final size:28
Alignment explanation
Indices: 180505734--180505803 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
180505724 AAATTTGTAC
180505734 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
180505762 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
180505789 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
180505804 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:180508148 original size:24 final size:24
Alignment explanation
Indices: 180508116--180508167 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
180508106 CCAACACCGT
*
180508116 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCCAAATCC
* *
180508140 TCTCCCTTATTAGCTCCCAAATCT
1 TCTCCCTTATCAGCTCCCAAATCC
180508164 TCTC
1 TCTC
180508168 ATGACAACCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.19, C:0.40, G:0.04, T:0.37
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCCAAATCC
Found at i:180508693 original size:48 final size:48
Alignment explanation
Indices: 180508554--180508673 Score: 145
Period size: 48 Copynumber: 2.5 Consensus size: 48
180508544 TTGGGGCGTT
* * * * *
180508554 ACATGACATCAATGATGATATATGTGCC--TAAGTACGACCATGTCTGGG
1 ACATGGCATCAACGATGATATGTGTGCCAGT-A-TAAGACCATGTCCGGG
**
180508602 ACATGGCATCAGGGATGATATGTGTGCCAGTATAAGACCATGTCCGGG
1 ACATGGCATCAACGATGATATGTGTGCCAGTATAAGACCATGTCCGGG
180508650 ACATGGCATCAACGATGATATGTG
1 ACATGGCATCAACGATGATATGTG
180508674 GATTCATGTA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
48 60 0.97
49 1 0.02
50 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (48 bp):
ACATGGCATCAACGATGATATGTGTGCCAGTATAAGACCATGTCCGGG
Found at i:180515780 original size:47 final size:46
Alignment explanation
Indices: 180515668--180515825 Score: 159
Period size: 47 Copynumber: 3.4 Consensus size: 46
180515658 GGACTATTGT
* *
180515668 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCAGCCA-T-ATTACGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATC-GACATTGAGTA--A
*
180515714 GAG-TCAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGAGATAA
1 GAGCT-AGTGTAAGACCATGTCTGGGACAT-GCATCGACATTGAG-TAA
*
180515762 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGAC-TACGAGTAA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACAT-TGAGTAA
*
180515807 -AACTAGTGTAAGACCATGT
1 GAGCTAGTGTAAGACCATGT
180515826 TTGAAACATG
Statistics
Matches: 97, Mismatches: 6, Indels: 19
0.80 0.05 0.16
Matches are distributed among these distances:
44 12 0.12
45 10 0.10
46 23 0.24
47 29 0.30
48 19 0.20
49 2 0.02
50 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (46 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACATTGAGTAA
Found at i:180515841 original size:46 final size:47
Alignment explanation
Indices: 180515719--180515846 Score: 147
Period size: 46 Copynumber: 2.7 Consensus size: 47
180515709 TACGAGAGTC
* *
180515719 AGTGTAAGACCATGTTTGGGACATGGCATCGACATTGAGATAAGAGCT
1 AGTGTAAGACCATGTTTGGGACAT-GCATCGACATCGAGATAAGAACT
*
180515767 AGTGTAAGA-CATGTCTGGGACATGCATCGAC-TACGAG-TAA-AACT
1 AGTGTAAGACCATGTTTGGGACATGCATCGACAT-CGAGATAAGAACT
** *
180515811 AGTGTAAGACCATGTTTGAAACATGACATCGGCATC
1 AGTGTAAGACCATGTTTGGGACATG-CATCGACATC
180515847 CTACCCCATA
Statistics
Matches: 69, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
44 12 0.17
45 16 0.23
46 18 0.26
47 14 0.20
48 9 0.13
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTTTGGGACATGCATCGACATCGAGATAAGAACT
Found at i:180527457 original size:26 final size:26
Alignment explanation
Indices: 180527396--180527458 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 26
180527386 ATTATGTAGG
180527396 AAGAATAA-AGAAATGAAAGAAAAAAA
1 AAGAA-AAGAGAAATGAAAGAAAAAAA
*
180527422 AAGAAAAAAGAGAATATG-AAGAAAAACA
1 AAG--AAAAGAGAA-ATGAAAGAAAAAAA
180527450 AAGAAAAGA
1 AAGAAAAGA
180527459 AAAAAAAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
26 9 0.28
27 2 0.06
28 18 0.56
29 3 0.09
ACGTcount: A:0.75, C:0.02, G:0.17, T:0.06
Consensus pattern (26 bp):
AAGAAAAGAGAAATGAAAGAAAAAAA
Found at i:180528700 original size:30 final size:29
Alignment explanation
Indices: 180528628--180528692 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
180528618 TGACGAGATT
* *
180528628 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAC
180528657 GGCACTAAGTGTGCATGCTGGAAAAAATAC
1 GGCACTAAGTGTGCATGCTGG-AAAAATAC
180528687 GGCACT
1 GGCACT
180528693 GGGTGTGCGA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
29 21 0.64
30 12 0.36
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAC
Found at i:180535342 original size:19 final size:17
Alignment explanation
Indices: 180535313--180535363 Score: 52
Period size: 19 Copynumber: 2.9 Consensus size: 17
180535303 ATAAAGAAAT
180535313 GAAAA-AAAAAAAAAGA
1 GAAAAGAAAAAAAAAGA
*
180535329 GAATATGAAGAAAAACAA-A
1 GAA-AAGAA-AAAAA-AAGA
180535348 GAAAAGAAAAAAAAAG
1 GAAAAGAAAAAAAAAG
180535364 TGTTCATTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
16 5 0.18
17 6 0.21
18 6 0.21
19 9 0.32
20 2 0.07
ACGTcount: A:0.78, C:0.02, G:0.16, T:0.04
Consensus pattern (17 bp):
GAAAAGAAAAAAAAAGA
Found at i:180536578 original size:27 final size:27
Alignment explanation
Indices: 180536514--180536594 Score: 144
Period size: 27 Copynumber: 2.9 Consensus size: 27
180536504 GTGACGAGAT
180536514 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGG-AA-ATA
180536543 TGGCACTAAGTGTGCATGCTGGAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATA
180536570 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
180536595 AATACGGCAC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
27 28 0.54
28 2 0.04
29 22 0.42
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.26
Consensus pattern (27 bp):
TGGCACTAAGTGTGCATGCTGGAAATA
Found at i:180536613 original size:29 final size:29
Alignment explanation
Indices: 180536514--180536605 Score: 152
Period size: 29 Copynumber: 3.2 Consensus size: 29
180536504 GTGACGAGAT
*
180536514 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
180536543 TGGCACTAAGTGTGCATGCTGG--AAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
180536570 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
180536599 CGGCACT
1 TGGCACT
180536606 GGGTGTGCGA
Statistics
Matches: 59, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
27 26 0.44
29 33 0.56
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:180539909 original size:21 final size:21
Alignment explanation
Indices: 180539883--180539968 Score: 100
Period size: 21 Copynumber: 4.1 Consensus size: 21
180539873 GGCTTTATCG
* *
180539883 ATCAGGCACTTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
*
180539904 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
*
180539925 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
* * * *
180539946 TTTAGGCACTTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
180539967 AT
1 AT
180539969 ACTGATCAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.16, C:0.22, G:0.26, T:0.36
Consensus pattern (21 bp):
ATCAGGCACCTCATGTGTCGT
Found at i:180541260 original size:18 final size:16
Alignment explanation
Indices: 180541220--180541262 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 16
180541210 TGTCGGATGA
*
180541220 GAGAATAAATGATACT
1 GAGAAGAAATGATACT
180541236 GATGAAGAAATGCATACT
1 GA-GAAGAAATG-ATACT
180541254 GGAGAAGAA
1 -GAGAAGAA
180541263 GAATCTTACG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 2 0.09
17 8 0.35
18 11 0.48
19 2 0.09
ACGTcount: A:0.49, C:0.07, G:0.26, T:0.19
Consensus pattern (16 bp):
GAGAAGAAATGATACT
Found at i:180547786 original size:21 final size:21
Alignment explanation
Indices: 180547760--180547845 Score: 100
Period size: 21 Copynumber: 4.1 Consensus size: 21
180547750 GGCTTTATCG
* *
180547760 ATCAGGCACTTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
*
180547781 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
*
180547802 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
* * * *
180547823 TTTAGGCACTTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
180547844 AT
1 AT
180547846 ACTAATCAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.16, C:0.22, G:0.26, T:0.36
Consensus pattern (21 bp):
ATCAGGCACCTCATGTGTCGT
Found at i:180550037 original size:29 final size:29
Alignment explanation
Indices: 180550004--180550162 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
180549994 GTGACGAGAT
180550004 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
180550033 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
180550062 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* * * ***
180550091 CGGCACT-GGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
180550119 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
180550148 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
180550163 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
28 22 0.20
29 89 0.80
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:180558123 original size:29 final size:29
Alignment explanation
Indices: 180558090--180558249 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
180558080 GTGACGAGAT
180558090 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
180558119 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
180558148 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
180558177 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
180558206 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
180558235 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
180558250 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:180566209 original size:29 final size:29
Alignment explanation
Indices: 180566176--180566335 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
180566166 GTGACGAGAT
180566176 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
180566205 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
180566234 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
180566263 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
180566292 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
180566321 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
180566336 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:180574277 original size:29 final size:29
Alignment explanation
Indices: 180574244--180574323 Score: 160
Period size: 29 Copynumber: 2.8 Consensus size: 29
180574234 GTGACGAGAT
180574244 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
180574273 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
180574302 TGGCACTAAGTGTGCATGCTGG
1 TGGCACTAAGTGTGCATGCTGG
180574324 GGCACTGTGT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:180577272 original size:9 final size:9
Alignment explanation
Indices: 180577260--180577316 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
180577250 TTTGATAAAC
180577260 ATGATATGT
1 ATGATATGT
*
180577269 ATGATATGCAC
1 ATGATATG--T
*
180577280 ATGACATGT
1 ATGATATGT
*
180577289 ATGATATGCAC
1 ATGATATG--T
180577300 ATGATATGT
1 ATGATATGT
180577309 ATGATATG
1 ATGATATG
180577317 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:180577283 original size:20 final size:20
Alignment explanation
Indices: 180577258--180577328 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
180577248 ATTTTGATAA
180577258 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
180577278 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
180577298 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
180577318 ACATGAGATGT
1 ACATGATATGT
180577329 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:180577305 original size:11 final size:11
Alignment explanation
Indices: 180577269--180577323 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
180577259 CATGATATGT
180577269 ATGATATGCAC
1 ATGATATGCAC
* *
180577280 ATGACATG--T
1 ATGATATGCAC
180577289 ATGATATGCAC
1 ATGATATGCAC
*
180577300 ATGATATG--T
1 ATGATATGCAC
180577309 ATGATATGCAC
1 ATGATATGCAC
180577320 ATGA
1 ATGA
180577324 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:180577429 original size:24 final size:24
Alignment explanation
Indices: 180577372--180577538 Score: 218
Period size: 24 Copynumber: 7.0 Consensus size: 24
180577362 GGAGGAAGTG
180577372 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
180577396 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
180577419 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
180577443 TAAAAGGGCTTATGCCCCAGTTTTAT
1 CAAAAGGGCTTATGCCCCAG--TTAT
180577469 CAAAAGGGCTTATG-CCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
180577492 -TAAAGGGCTT-TGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
180577514 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
180577539 ATGATAAAGC
Statistics
Matches: 128, Mismatches: 7, Indels: 15
0.85 0.05 0.10
Matches are distributed among these distances:
21 2 0.02
22 18 0.14
23 31 0.24
24 47 0.37
25 13 0.10
26 17 0.13
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:180577441 original size:47 final size:47
Alignment explanation
Indices: 180577372--180577538 Score: 250
Period size: 47 Copynumber: 3.5 Consensus size: 47
180577362 GGAGGAAGTG
180577372 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
180577419 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTTTAT
1 CAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAG--TTAT
180577469 CAAAAGGGCTTATG-CCCAGTTATTAAAGGGCTT-TGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
180577514 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
180577539 ATGATAAAGC
Statistics
Matches: 112, Mismatches: 2, Indels: 12
0.89 0.02 0.10
Matches are distributed among these distances:
45 12 0.11
46 4 0.04
47 41 0.37
48 27 0.24
49 10 0.09
50 18 0.16
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:180585380 original size:9 final size:9
Alignment explanation
Indices: 180585368--180585424 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
180585358 TTTGATAAAC
180585368 ATGATATGT
1 ATGATATGT
*
180585377 ATGATATGCAC
1 ATGATATG--T
*
180585388 ATGACATGT
1 ATGATATGT
*
180585397 ATGATATGCAC
1 ATGATATG--T
180585408 ATGATATGT
1 ATGATATGT
180585417 ATGATATG
1 ATGATATG
180585425 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:180585391 original size:20 final size:20
Alignment explanation
Indices: 180585366--180585436 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
180585356 ATTTTGATAA
180585366 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
180585386 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
180585406 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
180585426 ACATGAGATGT
1 ACATGATATGT
180585437 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:180585413 original size:11 final size:11
Alignment explanation
Indices: 180585377--180585431 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
180585367 CATGATATGT
180585377 ATGATATGCAC
1 ATGATATGCAC
* *
180585388 ATGACATG--T
1 ATGATATGCAC
180585397 ATGATATGCAC
1 ATGATATGCAC
*
180585408 ATGATATG--T
1 ATGATATGCAC
180585417 ATGATATGCAC
1 ATGATATGCAC
180585428 ATGA
1 ATGA
180585432 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:180585513 original size:23 final size:23
Alignment explanation
Indices: 180585483--180585578 Score: 174
Period size: 23 Copynumber: 4.1 Consensus size: 23
180585473 AGGAAGTGCA
180585483 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
180585506 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
180585530 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
180585553 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
180585576 AAA
1 AAA
180585579 AGAGGCTAGG
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
23 48 0.69
24 22 0.31
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:180585538 original size:24 final size:23
Alignment explanation
Indices: 180585482--180585600 Score: 168
Period size: 23 Copynumber: 5.0 Consensus size: 23
180585472 GAGGAAGTGC
180585482 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
180585505 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
180585528 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
180585552 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
180585576 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
180585600 A
1 A
180585601 TGATAAAGCA
Statistics
Matches: 87, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
23 43 0.49
24 34 0.39
25 10 0.11
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:180585550 original size:47 final size:47
Alignment explanation
Indices: 180585481--180585599 Score: 195
Period size: 47 Copynumber: 2.5 Consensus size: 47
180585471 GGAGGAAGTG
180585481 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
180585528 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
180585575 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
180585600 ATGATAAAGC
Statistics
Matches: 68, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
47 57 0.84
48 11 0.16
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:180586609 original size:37 final size:37
Alignment explanation
Indices: 180586568--180586648 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
180586558 GTTACAAAAA
180586568 ATCTCCACACGTAGTCATCGGGTCTTACCCAGAATAT
1 ATCTCCACACGTAGTCATCGGGTCTTACCCAGAATAT
* *
180586605 ATCTCCACACGTAGTCATCGGGTCTTCCCCGGAATAT
1 ATCTCCACACGTAGTCATCGGGTCTTACCCAGAATAT
*
180586642 ATTTCCA
1 ATCTCCA
180586649 AGTTTCATGT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (37 bp):
ATCTCCACACGTAGTCATCGGGTCTTACCCAGAATAT
Found at i:180586889 original size:98 final size:98
Alignment explanation
Indices: 180586787--180586968 Score: 276
Period size: 98 Copynumber: 1.9 Consensus size: 98
180586777 CATCGCCTAC
180586787 ATATTTCACACTAG-CCATTCAGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCC
1 ATATTTCACA-TAGACCATTCAGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCC
*
180586851 AGTCGGCTTTACCACATATACATATCTCATATAT
65 AGTCGGCCTTACCACATATACATATCTCATATAT
* * * * *
180586885 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATAGACCATTCAGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCCA
* *
180586950 TTCGGCCTTATCACATATA
66 GTCGGCCTTACCACATATA
180586969 TGCATGTTCA
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
97 2 0.03
98 73 0.97
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (98 bp):
ATATTTCACATAGACCATTCAGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCCA
GTCGGCCTTACCACATATACATATCTCATATAT
Found at i:180586914 original size:50 final size:48
Alignment explanation
Indices: 180586784--180586968 Score: 255
Period size: 48 Copynumber: 3.8 Consensus size: 48
180586774 GCACATCGCC
*
180586784 TACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
180586832 TACATAGTTCACACTAGCCAGTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
180586882 TATATATTTCACA-TTGACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCA
* * *
180586930 TACATATTTCACATTAGCCATTCGGCCTTATCACATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA
180586969 TGCATGTTCA
Statistics
Matches: 120, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
48 76 0.63
49 4 0.03
50 40 0.33
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:180587051 original size:94 final size:94
Alignment explanation
Indices: 180586801--180587062 Score: 248
Period size: 98 Copynumber: 2.7 Consensus size: 94
180586791 TTCACACTAG
* * * * * * *
180586801 CCATTCAGCTTTACCACATATACATATCTCATACATAGT-TCACACTAGCCAGTCGGCTTTACCA
1 CCATTCGGCCTTACCACATATGCATATCTCA-ACATA-TATCACATTAGCCATTCGGCCTTATCA
* *
180586865 CATATA--CATATCTCATATATATATTTCACATTGA
64 CATATATGCATGT-TCATAT-T-CA--TCACATTGA
* *
180586899 CCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCCTTATCAC
1 CCATTCGGCCTTACCACATATGCATATCTCA-ACATATATCACATTAGCCATTCGGCCTTATCAC
*
180586964 ATATATGCATGTTCATATTCATCACATTGG
65 ATATATGCATGTTCATATTCATCACATTGA
* *
180586994 CCATTCGGCCTTATCACACATATGCATGT-TC-ACAT-TCATCACATTAGCCATTTGGCCTTATC
1 CCATTCGGCCTTA-C-CACATATGCATATCTCAACATAT-ATCACATTAGCCATTCGGCCTTATC
*
180587056 TCATATA
63 ACATATA
180587063 CACACAATCA
Statistics
Matches: 144, Mismatches: 14, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
93 1 0.01
94 33 0.23
95 20 0.14
96 3 0.02
97 14 0.10
98 63 0.44
99 6 0.04
100 4 0.03
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.35
Consensus pattern (94 bp):
CCATTCGGCCTTACCACATATGCATATCTCAACATATATCACATTAGCCATTCGGCCTTATCACA
TATATGCATGTTCATATTCATCACATTGA
Found at i:180587075 original size:47 final size:47
Alignment explanation
Indices: 180586938--180587062 Score: 205
Period size: 47 Copynumber: 2.7 Consensus size: 47
180586928 CATACATATT
*
180586938 TCACATTAGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
180586985 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
180587032 TCACATTAGCCATTTGGCCTTATCTCATATA
1 TCACATTAGCCATTCGGCCTTATCACATATA
180587063 CACACAATCA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.26, C:0.27, G:0.11, T:0.35
Consensus pattern (47 bp):
TCACATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:180590478 original size:43 final size:43
Alignment explanation
Indices: 180590410--180590537 Score: 127
Period size: 45 Copynumber: 3.0 Consensus size: 43
180590400 CTTTTCTCAA
* * * *
180590410 ATCACCGGCATT-TCGCCTGTTAGGCTTG-AGGCTCGATATAAGT
1 ATCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGA-AT-AGT
180590453 -TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT
1 ATCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT
** * *
180590495 ATCTTACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 ATC--ACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
180590538 ATCAAGTTAA
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
42 14 0.19
43 17 0.24
44 7 0.10
45 34 0.47
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (43 bp):
ATCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT
Found at i:180590924 original size:43 final size:43
Alignment explanation
Indices: 180590867--180591064 Score: 324
Period size: 43 Copynumber: 4.6 Consensus size: 43
180590857 CCGGCATTAC
*
180590867 GCCTACTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
180590910 ACCTGCTAGTCACGAAGGCCCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
180590953 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
180590996 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
180591039 GCATGCTAGGCACGAAGGCCTGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
180591065 TAATACCAGC
Statistics
Matches: 145, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 145 1.00
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:180596306 original size:43 final size:43
Alignment explanation
Indices: 180596245--180596408 Score: 242
Period size: 43 Copynumber: 3.9 Consensus size: 43
180596235 ACATATCATT
* * *
180596245 TCACCGGCATTACGCCTGCAAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* * *
180596288 TCACCAGCACGAAGCCTGCTAGGCACGAAGGCCTGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
180596331 TCACCGGCACTAAGCCTACTAGGCTCG-AGGCCC-AATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
180596372 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAA
180596409 ATAATACCAG
Statistics
Matches: 106, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
41 33 0.31
42 11 0.10
43 62 0.58
ACGTcount: A:0.30, C:0.35, G:0.23, T:0.12
Consensus pattern (43 bp):
TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Done.