Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 579 of 770
Found at i:180596388 original size:84 final size:86
Alignment explanation
Indices: 180596245--180596404 Score: 243
Period size: 84 Copynumber: 1.9 Consensus size: 86
180596235 ACATATCATT
* * *
180596245 TCACCGGCATTACGCCTGCAAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAG
1 TCACCGGCACTAAGCCTACAAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAG
180596310 GCACGAAGGCCTGAATACACA
66 GCACGAAGGCCTGAATACACA
* * * *
180596331 TCACCGGCACTAAGCCTACTAGGCTCG-AGGCCC-AATACACATCACCGGCACTAAGCCTGCTAG
1 TCACCGGCACTAAGCCTACAAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAG
180596394 GCACGAAGGCC
66 GCACGAAGGCC
180596405 CGAAATAATA
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
84 39 0.58
85 6 0.09
86 22 0.33
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.12
Consensus pattern (86 bp):
TCACCGGCACTAAGCCTACAAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAG
GCACGAAGGCCTGAATACACA
Found at i:180606544 original size:40 final size:40
Alignment explanation
Indices: 180606489--180606824 Score: 496
Period size: 40 Copynumber: 8.4 Consensus size: 40
180606479 GATGATAACG
*
180606489 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCC
*
180606529 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCC
* *
180606569 GGGCTAAGTCCTGAAGGCATTGGTGCGAGTTACTATTTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCC
* *
180606609 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCA
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCC
* *
180606649 GGGCTAAGTCCCGAAGGCATTTGTGCCAATTACTATTTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCC
*
180606689 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCC
* ** *
180606729 GGGCTAAGTCCCGAAGCCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCC
* *
180606769 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATTTCC
* *
180606809 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
180606825 TACTTGGTTT
Statistics
Matches: 271, Mismatches: 24, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
39 16 0.06
40 255 0.94
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCC
Found at i:180614695 original size:40 final size:41
Alignment explanation
Indices: 180614609--180614712 Score: 167
Period size: 40 Copynumber: 2.6 Consensus size: 41
180614599 GATGATAACG
* *
180614609 GGGCTAAGTCCCAAAGGCATTATGTGCGAGTTACTAATTTCC
1 GGGCTAAGTCCCGAAGGCATT-TGTGCGAGTTACTAATATCC
180614651 -GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATATCC
180614690 GGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
180614713 ANNNNNNNNN
Statistics
Matches: 59, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
39 5 0.08
40 35 0.59
41 19 0.32
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (41 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATATCC
Found at i:180618234 original size:20 final size:20
Alignment explanation
Indices: 180618211--180618248 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
180618201 CACATCCAAA
*
180618211 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
180618231 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
180618249 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:180624562 original size:28 final size:28
Alignment explanation
Indices: 180624516--180624584 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
180624506 TTTAAAACCC
*
180624516 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
180624543 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
180624571 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
180624585 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:180626231 original size:20 final size:20
Alignment explanation
Indices: 180626208--180626245 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
180626198 CACATCCAAA
*
180626208 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
180626228 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
180626246 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:180627460 original size:38 final size:38
Alignment explanation
Indices: 180627418--180627492 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
180627408 AGTATGAAAT
180627418 GAAATGTATGAGATAAGTTTAGCAGCAAAAACACAAAA
1 GAAATGTATGAGATAAGTTTAGCAGCAAAAACACAAAA
**
180627456 GAAATGTATGAGATGTGTTTAGCAGCAAAAACACAAA
1 GAAATGTATGAGATAAGTTTAGCAGCAAAAACACAAA
180627493 CTTCAACAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.49, C:0.11, G:0.20, T:0.20
Consensus pattern (38 bp):
GAAATGTATGAGATAAGTTTAGCAGCAAAAACACAAAA
Found at i:180636325 original size:20 final size:20
Alignment explanation
Indices: 180636300--180636358 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
180636290 TAAATATGGT
180636300 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
180636320 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
180636340 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
180636359 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:180636439 original size:23 final size:24
Alignment explanation
Indices: 180636409--180636503 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
180636399 GAGGAAGTGA
180636409 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
180636432 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
180636456 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
180636480 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
180636504 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:180636477 original size:47 final size:49
Alignment explanation
Indices: 180636410--180636503 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
180636400 AGGAAGTGAA
*
180636410 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
180636457 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
180636504 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:180636737 original size:31 final size:31
Alignment explanation
Indices: 180636694--180636757 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
180636684 CGTTTACAGT
*
180636694 AAAGTCTTCGGCCCAGTAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTAATATGAAACATGA
* *
180636725 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAACATGA
180636756 AA
1 AA
180636758 TACGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAACATGA
Found at i:180643636 original size:58 final size:58
Alignment explanation
Indices: 180643546--180643656 Score: 222
Period size: 58 Copynumber: 1.9 Consensus size: 58
180643536 TGTTGCACCC
180643546 ATGAATTGTTAAGTAATCATTAATAAACATGGAAACCCTAATTTTTGGTAAAAGGTTA
1 ATGAATTGTTAAGTAATCATTAATAAACATGGAAACCCTAATTTTTGGTAAAAGGTTA
180643604 ATGAATTGTTAAGTAATCATTAATAAACATGGAAACCCTAATTTTTGGTAAAA
1 ATGAATTGTTAAGTAATCATTAATAAACATGGAAACCCTAATTTTTGGTAAAA
180643657 TTGCAAGATT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.34
Consensus pattern (58 bp):
ATGAATTGTTAAGTAATCATTAATAAACATGGAAACCCTAATTTTTGGTAAAAGGTTA
Found at i:180643710 original size:25 final size:25
Alignment explanation
Indices: 180643681--180643728 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
180643671 TTATACCATG
* * *
180643681 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
180643706 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
180643729 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:180643797 original size:20 final size:20
Alignment explanation
Indices: 180643772--180643830 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
180643762 TAAAGATGGT
180643772 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
180643792 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
180643812 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
180643831 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:180643812 original size:11 final size:11
Alignment explanation
Indices: 180643776--180643830 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
180643766 GATGGTATGT
180643776 ATGATATGCAC
1 ATGATATGCAC
* *
180643787 ATGAAATG--T
1 ATGATATGCAC
180643796 ATGATATGCAC
1 ATGATATGCAC
*
180643807 ATGATATG--T
1 ATGATATGCAC
180643816 ATGATATGCAC
1 ATGATATGCAC
180643827 ATGA
1 ATGA
180643831 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:180643911 original size:23 final size:24
Alignment explanation
Indices: 180643881--180643975 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
180643871 GAGGAAGTGA
180643881 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
180643904 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
180643928 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
180643952 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
180643976 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:180643949 original size:47 final size:49
Alignment explanation
Indices: 180643882--180643975 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
180643872 AGGAAGTGAA
*
180643882 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
180643929 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
180643976 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:180644202 original size:31 final size:31
Alignment explanation
Indices: 180644167--180644230 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
180644157 CGTTTACAGT
180644167 AAAGGCTTCGGCCCAGTAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTAATATGAAACATGA
* *
180644198 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAACATGA
180644229 AA
1 AA
180644231 TACGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAACATGA
Found at i:180645438 original size:26 final size:27
Alignment explanation
Indices: 180645400--180645499 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 27
180645390 TAATAATGCA
** *
180645400 GCATAGCTGCCAGAAACAGTAAATGTG
1 GCATAGCCACCAGTAACAGTAAATGTG
* * *
180645427 GCA-AGCCTCCAGTATCAGTAATTGTG
1 GCATAGCCACCAGTAACAGTAAATGTG
*
180645453 GCATAGCCACCAGTAACAGTGAATGTG
1 GCATAGCCACCAGTAACAGTAAATGTG
* *
180645480 ACATAGTCACCAGT-ACAGTA
1 GCATAGCCACCAGTAACAGTA
180645500 CTTCCTCCAT
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
26 26 0.43
27 34 0.57
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (27 bp):
GCATAGCCACCAGTAACAGTAAATGTG
Found at i:180646132 original size:27 final size:27
Alignment explanation
Indices: 180645665--180646137 Score: 434
Period size: 27 Copynumber: 17.6 Consensus size: 27
180645655 TATTACGATC
* *
180645665 ATTTTACAAACTGGGGGTATTTCGGTA
1 ATTTTACAAATTAGGGGTATTTCGGTA
** *
180645692 ATTTTATC-AATCGGGGGTATTTCGATA
1 ATTTTA-CAAATTAGGGGTATTTCGGTA
* * * * *
180645719 GTTTCACAAGTCAGGGGTATTTCGATA
1 ATTTTACAAATTAGGGGTATTTCGGTA
**
180645746 ATTTTACAACCT-GGGAGTATTTCGGTA
1 ATTTTACAAATTAGGG-GTATTTCGGTA
* * *
180645773 ATTTCACAAATCAGGGGTATTTCAGTA
1 ATTTTACAAATTAGGGGTATTTCGGTA
* *
180645800 ATTTTACAAA--AGAGGTATTTCGATA
1 ATTTTACAAATTAGGGGTATTTCGGTA
* *
180645825 ATTTCT-CAAATTAGCGGTATTTCGATA
1 ATTT-TACAAATTAGGGGTATTTCGGTA
* **
180645852 ATTTCACAAATTAGGGGTATTTTAGTA
1 ATTTTACAAATTAGGGGTATTTCGGTA
* **
180645879 ATTTTACAAATCAGGGGTATTTCGACA
1 ATTTTACAAATTAGGGGTATTTCGGTA
* * * *
180645906 ATTTCACAAGTCAGGGGTATTTCGATA
1 ATTTTACAAATTAGGGGTATTTCGGTA
* *
180645933 ATTTTACAACTTAGGAGTATTTCGGTA
1 ATTTTACAAATTAGGGGTATTTCGGTA
* * * *
180645960 ATTTCATAAAGTAGGGGTATTTCAGTA
1 ATTTTACAAATTAGGGGTATTTCGGTA
** ** * *
180645987 ATTTTACAAAAAAAAGGTATTTTGATA
1 ATTTTACAAATTAGGGGTATTTCGGTA
* * *
180646014 ATTTCACAAATTAGTGGTATTTCTGTA
1 ATTTTACAAATTAGGGGTATTTCGGTA
* *
180646041 ATTTCACAAATTAGGGGTATTTCGTTA
1 ATTTTACAAATTAGGGGTATTTCGGTA
* * *
180646068 ATTTTACAAATCAGGGGCATTTTGGTA
1 ATTTTACAAATTAGGGGTATTTCGGTA
*
180646095 ATTTTACAAATTAGGGGTATTTTGGTA
1 ATTTTACAAATTAGGGGTATTTCGGTA
180646122 ATTTTACAAATTAGGG
1 ATTTTACAAATTAGGG
180646138 TCTTAACGAC
Statistics
Matches: 363, Mismatches: 75, Indels: 16
0.80 0.17 0.04
Matches are distributed among these distances:
25 20 0.06
26 5 0.01
27 334 0.92
28 4 0.01
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
ATTTTACAAATTAGGGGTATTTCGGTA
Found at i:180649639 original size:40 final size:39
Alignment explanation
Indices: 180649595--180649776 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
180649585 GTTCAAAACA
* * ** * *
180649595 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
180649635 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
180649675 CCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
180649714 CTTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
180649753 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
180649777 CTCGAACATT
Statistics
Matches: 127, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 87 0.69
40 40 0.31
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:180649706 original size:39 final size:39
Alignment explanation
Indices: 180649625--180649776 Score: 241
Period size: 39 Copynumber: 3.9 Consensus size: 39
180649615 TATGGTAACC
* * * *
180649625 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
180649665 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
*
180649704 CGCACAATTGCTTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
180649743 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
180649777 CTCGAACATT
Statistics
Matches: 104, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 87 0.84
40 17 0.16
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:180652792 original size:80 final size:80
Alignment explanation
Indices: 180652708--180652856 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
180652698 TATGGTAACC
* * * *
180652708 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
180652772 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
180652788 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
180652853 CCGG
66 CCGG
180652857 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:180652798 original size:40 final size:38
Alignment explanation
Indices: 180652749--180652856 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
180652739 ATCACGATTT
*
180652749 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
180652789 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
180652829 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
180652857 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:180660381 original size:40 final size:40
Alignment explanation
Indices: 180660337--180660488 Score: 207
Period size: 40 Copynumber: 3.8 Consensus size: 40
180660327 ATATCACGAT
180660337 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
*
180660377 TTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
* * * **
180660417 TTGCACGAATGCCTTCGGGTCTTAGCCTGGATATAATTAC
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
* * *
180660457 TAGCATAAATGTCC-TCGGGACTTAGCCCGGAT
1 TTGCACAAATG-CCTTCGGGTCTTAGCCCGGAT
180660489 ATCACAATTT
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
40 99 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
TTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
Found at i:180663792 original size:24 final size:24
Alignment explanation
Indices: 180663760--180663872 Score: 106
Period size: 24 Copynumber: 4.7 Consensus size: 24
180663750 AACAAGGAGC
* *
180663760 TGTTGGACAGATTTATTGAGCTGT
1 TGTTGGACAAATTTAATGAGCTGT
180663784 TGTTGGACAAATTTAATGAGCTGT
1 TGTTGGACAAATTTAATGAGCTGT
* * *
180663808 TGCTAGACAAATTTAATGAGCTAT
1 TGTTGGACAAATTTAATGAGCTGT
*
180663832 TGGTT-GACGGAA-TTAATGAGCTGCT
1 T-GTTGGAC-AAATTTAATGAGCTG-T
* *
180663857 AG-TGGTCAAATTTAAT
1 TGTTGGACAAATTTAAT
180663873 ATGTTCTAAC
Statistics
Matches: 73, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
23 3 0.04
24 65 0.89
25 5 0.07
ACGTcount: A:0.29, C:0.10, G:0.25, T:0.36
Consensus pattern (24 bp):
TGTTGGACAAATTTAATGAGCTGT
Found at i:180672083 original size:19 final size:20
Alignment explanation
Indices: 180672059--180672096 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
180672049 GGTACCACCA
180672059 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
180672078 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
180672097 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:180672392 original size:46 final size:45
Alignment explanation
Indices: 180672325--180672490 Score: 185
Period size: 46 Copynumber: 3.6 Consensus size: 45
180672315 CGCCCCTAAG
*
180672325 TGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCATT-GCATCCATAAA
* * *
180672371 TGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTGCATCCATAAA
* * *
180672418 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCA-TTGCATCCATAAA
180672464 TGAACTCGGACTCAACTCAACGAGTTC
1 TGAACTCGGACTCAACTCAACGAGTTC
180672491 TGATGCTCAA
Statistics
Matches: 100, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 53 0.53
47 28 0.28
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCATTGCATCCATAAA
Found at i:180672436 original size:93 final size:93
Alignment explanation
Indices: 180672326--180672496 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
180672316 GCCCCTAAGT
*
180672326 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
180672391 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
180672419 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
*
180672484 CGAGTTCTGATGC
66 CGAGTTCGGATGC
180672497 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:180676543 original size:29 final size:29
Alignment explanation
Indices: 180676510--180676592 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
180676500 GTGACGAGAT
180676510 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
180676539 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
180676568 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
180676593 AAATACGGCA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:180676632 original size:59 final size:58
Alignment explanation
Indices: 180676506--180676641 Score: 159
Period size: 59 Copynumber: 2.3 Consensus size: 58
180676496 TACGGTGACG
* * *
180676506 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
180676563 ATATATGGCACTAAGTGTGCATGCTGGAAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGG-AAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
180676622 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
180676642 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
57 3 0.05
58 22 0.33
59 40 0.61
60 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:180683302 original size:28 final size:28
Alignment explanation
Indices: 180683241--180683338 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
180683231 TCACAAATTG
** * *
180683241 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
180683270 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
180683298 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
180683326 GCACTAAGTGTGC
1 GCACTAAGTGTGC
180683339 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:180690934 original size:28 final size:28
Alignment explanation
Indices: 180690873--180690970 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
180690863 TCACAAATTG
** * *
180690873 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
180690902 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
180690930 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
180690958 GCACTAAGTGTGC
1 GCACTAAGTGTGC
180690971 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:180702800 original size:15 final size:15
Alignment explanation
Indices: 180702780--180702835 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
180702770 GTATCTTGGG
180702780 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
180702795 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
180702810 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
180702825 TTTCTTTATTC
1 TTTCTTTATTC
180702836 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:180705274 original size:46 final size:47
Alignment explanation
Indices: 180705224--180705396 Score: 214
Period size: 46 Copynumber: 3.7 Consensus size: 47
180705214 TGGTTGAGCA
180705224 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-TG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTG
* * * *
180705270 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACT--G
180705315 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACT-
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTG
* *
180705363 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
180705397 GGGGCGGTTA
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.56
47 29 0.27
48 2 0.02
50 3 0.03
51 4 0.04
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTG
Found at i:180705380 original size:93 final size:93
Alignment explanation
Indices: 180705221--180705391 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
180705211 GGATGGTTGA
*
180705221 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
180705286 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
180705314 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACT-CCCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-TGCCCGAACTCGTTGAG
180705378 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
180705392 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
93 74 0.99
94 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:180707779 original size:40 final size:40
Alignment explanation
Indices: 180707618--180707818 Score: 146
Period size: 40 Copynumber: 5.1 Consensus size: 40
180707608 GAATGATGTT
*
180707618 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAAC
* * * * ***
180707658 CGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AATC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA-C
**
180707698 CGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AACC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA-C
* *
180707736 CGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAAC
** * * * *
180707776 CGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAAC
180707816 CGG
1 CGG
180707819 TTAAATTCCG
Statistics
Matches: 128, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 76 0.59
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAAC
Found at i:180707781 original size:78 final size:79
Alignment explanation
Indices: 180707618--180707767 Score: 196
Period size: 78 Copynumber: 1.9 Consensus size: 79
180707608 GAATGATGTT
* * *
180707618 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTCGT
1 CGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCGT
* *
180707683 GCGAGTTAATAAATC
65 GCAAGTCAATAAATC
* **
180707698 CGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTCGT
1 CGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTCGT
180707761 GCAAGTC
65 GCAAGTC
180707768 GCTATAACCG
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.57
79 17 0.28
80 8 0.13
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
CGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCGTG
CAAGTCAATAAATC
Found at i:180715709 original size:40 final size:38
Alignment explanation
Indices: 180715652--180715801 Score: 124
Period size: 38 Copynumber: 3.8 Consensus size: 38
180715642 TCGAATGATG
* * *
180715652 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATA
1 TCCGGACTAA-TCCCGAAGGCTTTGTGC-AAGTTACTAAA
* * *
180715692 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGACTA--ATCCCGAAGGC-TTTGTGCAAGTTACTAAA
*
180715732 TCCGGGCTAATCCCGAAGGCTTTGTGCAAGTTACTAAA
1 TCCGGACTAATCCCGAAGGCTTTGTGCAAGTTACTAAA
* ** *
180715770 CCCGGGTTAAGT-CCGAAGGCATTCGTGCAAGT
1 TCCGGACTAA-TCCCGAAGGC-TTTGTGCAAGT
180715802 CGCTATAACC
Statistics
Matches: 91, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
38 33 0.36
39 19 0.21
40 31 0.34
41 7 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (38 bp):
TCCGGACTAATCCCGAAGGCTTTGTGCAAGTTACTAAA
Found at i:180715775 original size:38 final size:39
Alignment explanation
Indices: 180715652--180715832 Score: 154
Period size: 40 Copynumber: 4.6 Consensus size: 39
180715642 TCGAATGATG
* * *
180715652 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
180715692 TCCGGACTAGGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCAAGTTACTAAA
*
180715732 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCAAGTTACTAAA
* * **
180715770 CCCGGGTTAAGTCCGAAGGCATTCGTGCAAGTCGCTATAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCAAGTTACTA-AA
**
180715810 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGT-CCGAAGGCATT
180715833 TGAGCGAGTC
Statistics
Matches: 114, Mismatches: 20, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
38 32 0.28
39 30 0.26
40 45 0.39
41 7 0.06
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:180715814 original size:39 final size:39
Alignment explanation
Indices: 180715704--180715832 Score: 113
Period size: 38 Copynumber: 3.3 Consensus size: 39
180715694 CGGACTAGGA
* * * * *
180715704 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAA-
1 TCCGAAGGCATTCGTGCAAGTCACTAAACCCGGGTTAAG
* *
180715742 TCCCGAAGGC-TTTGTGCAAGTTACTAAACCCGGGTTAAG
1 T-CCGAAGGCATTCGTGCAAGTCACTAAACCCGGGTTAAG
* *
180715781 TCCGAAGGCATTCGTGCAAGTCGCTATAA-CCGGGCTT-CG
1 TCCGAAGGCATTCGTGCAAGTCACTA-AACCCGGG-TTAAG
180715820 TCCCGAAGGCATT
1 T-CCGAAGGCATT
180715833 TGAGCGAGTC
Statistics
Matches: 76, Mismatches: 9, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
38 32 0.42
39 29 0.38
40 15 0.20
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (39 bp):
TCCGAAGGCATTCGTGCAAGTCACTAAACCCGGGTTAAG
Found at i:180718438 original size:28 final size:29
Alignment explanation
Indices: 180718368--180718499 Score: 92
Period size: 29 Copynumber: 4.6 Consensus size: 29
180718358 ATACTCGATT
*
180718368 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATGCGATTCAAGC
* ** * *
180718397 CCGCACACACAGTGCCATGC-CTTCGAGC
1 TCGCACACTTAGTGCCATGCGATTCAAGC
** *
180718425 TCGCACACTTAGTGCCAT-ATATTTCCAGC
1 TCGCACACTTAGTGCCATGCGA-TTCAAGC
** *
180718454 AT-GCACACTTAGTGCCAT-ATATTTCCAGC
1 -TCGCACACTTAGTGCCATGCGA-TTCAAGC
*
180718483 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
180718500 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 13, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
28 20 0.23
29 65 0.76
30 1 0.01
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATGCGATTCAAGC
Found at i:180718460 original size:57 final size:58
Alignment explanation
Indices: 180718368--180718499 Score: 133
Period size: 57 Copynumber: 2.3 Consensus size: 58
180718358 ATACTCGATT
* * * *
180718368 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCAT-GCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATAGACTTCCAGC
* * * ** * *
180718425 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATAGACTTCCAGC
*
180718483 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
180718500 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 35 0.57
58 22 0.36
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATAGACTTCCAGC
Found at i:180718463 original size:29 final size:29
Alignment explanation
Indices: 180718426--180718499 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
180718416 CCTTCGAGCT
180718426 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
180718455 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
180718484 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
180718500 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:180725625 original size:28 final size:29
Alignment explanation
Indices: 180725555--180725686 Score: 92
Period size: 29 Copynumber: 4.6 Consensus size: 29
180725545 ATACTCGATT
*
180725555 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATGCGATTCAAGC
* ** * *
180725584 CCGCACACACAGTGCCATGC-CTTCGAGC
1 TCGCACACTTAGTGCCATGCGATTCAAGC
** *
180725612 TCGCACACTTAGTGCCAT-ATATTTCCAGC
1 TCGCACACTTAGTGCCATGCGA-TTCAAGC
** *
180725641 AT-GCACACTTAGTGCCAT-ATATTTCCAGC
1 -TCGCACACTTAGTGCCATGCGA-TTCAAGC
*
180725670 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
180725687 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 13, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
28 20 0.23
29 65 0.76
30 1 0.01
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATGCGATTCAAGC
Found at i:180725647 original size:57 final size:58
Alignment explanation
Indices: 180725555--180725686 Score: 133
Period size: 57 Copynumber: 2.3 Consensus size: 58
180725545 ATACTCGATT
* * * *
180725555 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCAT-GCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATAGACTTCCAGC
* * * ** * *
180725612 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATAGACTTCCAGC
*
180725670 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
180725687 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 35 0.57
58 22 0.36
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATAGACTTCCAGC
Found at i:180725650 original size:29 final size:29
Alignment explanation
Indices: 180725613--180725686 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
180725603 CCTTCGAGCT
180725613 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
180725642 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
180725671 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
180725687 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:180730979 original size:928 final size:932
Alignment explanation
Indices: 180726823--180731063 Score: 8279
Period size: 929 Copynumber: 4.6 Consensus size: 932
180726813 GTTACAATGG
*
180726823 CAGGGTAAATATGCTTATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
1 CAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
*
180726888 GTTACAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACCTTTTTGG
66 GTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACCTTTTTGG
180726953 TTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAAT
131 TTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAAT
180727018 TTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAAT
196 TTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAAT
180727083 TTCTGTAATTTCGGCTTTTGGGATT-TTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCATT
261 TTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCATT
180727147 TTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAATT
326 TTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAATT
*
180727212 TTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGGG
391 TCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGGG
180727277 CTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTGGTCTAGTGGTTAAGTGGCAA
456 CTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTGGTCTAGTGGTTAAGTGGCAA
180727342 GGTTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGT
521 GGTTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGT
180727407 TAGACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTT
586 TAGACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTT
180727472 TGTAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCT
651 TGTAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCT
180727537 CTTTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTT
716 CTTTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTT
180727602 GGCCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTG
781 GGCCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTG
180727667 GAATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTT
846 GAATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTT
180727732 TGAAGGATGGATGAAGGTATGA
911 TGAAGGATGGATGAAGGTATGA
180727754 CAGGGTAAATATGCATATGGTAGGTG---TTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
1 CAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
180727816 GTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACCTTTTTGG
66 GTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACCTTTTTGG
180727881 TTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAAT
131 TTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAAT
180727946 TTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAAT
196 TTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAAT
180728011 TTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCATT
261 TTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCATT
180728076 TTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAATT
326 TTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAATT
*
180728141 TTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGGG
391 TCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGGG
180728206 CTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTGGTCTAGTGGTTAAGTGGCAA
456 CTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTGGTCTAGTGGTTAAGTGGCAA
180728271 GGTTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGT
521 GGTTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGT
180728336 TAGACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTT
586 TAGACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTT
180728401 TGTAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCT
651 TGTAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCT
180728466 CTTTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTT
716 CTTTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTT
180728531 GGCCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTG
781 GGCCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTG
180728596 GAATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTT
846 GAATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTT
180728661 TGAAGGATGGATGAAGGTATGA
911 TGAAGGATGGATGAAGGTATGA
180728683 CAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
1 CAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
180728748 GTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACCTGTTTTG
66 GTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACCT-TTTTG
180728813 GTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAA
130 GTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAA
180728878 TTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAA
195 TTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAA
180728943 TTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCAT
260 TTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCAT
*
180729008 TTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAAG
325 TTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAAT
180729073 TTCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGG
390 TTCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGG
180729138 GCTTATAAGAATTTATTGGTAGGAATTTAACA-AATGGGCCTGCTGGTCTAGTGGTTAAGTGGCA
455 GCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTGGTCTAGTGGTTAAGTGGCA
*
180729202 AGGTTAGTTATTCTCATATTGGATTGGGTTTACATGCTTTGTGGTTGTATATTGTATTGGCAAGG
520 AGGTTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGG
180729267 TTAGACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTT
585 TTAGACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTT
180729332 TTGTAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGC
650 TTGTAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGC
180729397 TCTTTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGT
715 TCTTTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGT
180729462 TGGCCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGT
780 TGGCCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGT
180729527 GGAATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGT
845 GGAATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGT
180729592 TTGAAGGATGGATGAAGGTATGA
910 TTGAAGGATGGATGAAGGTATGA
180729615 CACGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATT
1 CA-GGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATT
180729680 AGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACC-TTTTG
65 AGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACCTTTTTG
180729744 GTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAA
130 GTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAA
180729809 TTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAA
195 TTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAA
180729874 TTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCAT
260 TTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCAT
180729939 TTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAA-
325 TTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAAT
180730003 TTCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGG
390 TTCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGG
180730068 GCTTATAAGAATTTATTGGTAGGAATTTAACA-AATGGGCCTGCTGGTCTAGTGGTTAAGTGGCA
455 GCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTGGTCTAGTGGTTAAGTGGCA
180730132 AGGTTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATT-GCAAGG
520 AGGTTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGG
180730196 TTAGACTGTATGTGTCACG-ACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTT
585 TTAGACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTT
180730260 TTGTAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGC
650 TTGTAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGC
*
180730325 GCTTTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGT
715 TCTTTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGT
180730390 TGGCCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGT
780 TGGCCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGT
180730455 GGAATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGT
845 GGAATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGT
180730520 TTGAAGGATGGATGAAGGTATGA
910 TTGAAGGATGGATGAAGGTATGA
180730543 CAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
1 CAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
180730608 GTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTA-TACCTTTTTGG
66 GTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACCTTTTTGG
180730672 TTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAAT
131 TTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAAT
* *
180730737 TTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATATGCCATTTATGACGCCCCAAAT
196 TTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAAT
* *
180730802 TTCTTTAATTTCGGGTTTTGGGATTGTTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCATT
261 TTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCATT
180730867 TTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAATT
326 TTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAATT
180730932 TCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGGG
391 TCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGGG
*
180730997 CTTATAAGAATTTATTGGTAGGAATTTAACATAATGGGCCTGCTGGTCTAGTGGTTAAGTGGCAA
456 CTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTGGTCTAGTGGTTAAGTGGCAA
180731062 GG
521 GG
180731064 GATTATGCCT
Statistics
Matches: 3290, Mismatches: 11, Indels: 20
0.99 0.00 0.01
Matches are distributed among these distances:
926 4 0.00
927 376 0.11
928 681 0.21
929 732 0.22
930 186 0.06
931 289 0.09
932 541 0.16
933 481 0.15
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.40
Consensus pattern (932 bp):
CAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
GTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACCTTTTTGG
TTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAAT
TTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAAT
TTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCATT
TTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAATT
TCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGGG
CTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTGGTCTAGTGGTTAAGTGGCAA
GGTTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGT
TAGACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTT
TGTAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCT
CTTTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTT
GGCCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTG
GAATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTT
TGAAGGATGGATGAAGGTATGA
Found at i:180739110 original size:27 final size:27
Alignment explanation
Indices: 180739080--180739171 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
180739070 TGGATAAATT
*
180739080 GTAGAATTACCAAAATACCCCTGTATG
1 GTAGAATTACCAAAATACCCCTGTAGG
* * *
180739107 GTAGAAATATCGAAATACCCC-GTAGG
1 GTAGAATTACCAAAATACCCCTGTAGG
* * *
180739133 GTAGAATTACCAAGATACCCTTATAGG
1 GTAGAATTACCAAAATACCCCTGTAGG
*
180739160 GTAAAATTACCA
1 GTAGAATTACCA
180739172 TTTTGCCCCT
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
26 20 0.38
27 33 0.62
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCAAAATACCCCTGTAGG
Found at i:180742979 original size:39 final size:39
Alignment explanation
Indices: 180742897--180743131 Score: 348
Period size: 39 Copynumber: 6.0 Consensus size: 39
180742887 CGATTATAGT
* *
180742897 AACTCGCACAAATGCCTTCGGGACTTAACCCGGATATCAC
1 AACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCAC
180742937 AACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 AACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
180742976 AACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 AACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
*
180743015 AACTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 AACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
*
180743054 AACTCGCACAATTGCCTTCGGGCTTAGCCCGGAT-TTAGTC
1 AACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA--C
* * * *
180743094 -ACTAGAACAAATGCCTTCGGGACTTAGCCCGGTTATCA
1 AACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
180743132 TCCGAACATT
Statistics
Matches: 181, Mismatches: 10, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
38 2 0.01
39 144 0.80
40 33 0.18
41 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
AACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
Found at i:180747088 original size:41 final size:41
Alignment explanation
Indices: 180747042--180747384 Score: 501
Period size: 41 Copynumber: 8.3 Consensus size: 41
180747032 TATTTGGGCT
*
180747042 TTATTGCCTAGCAGGCTTTGTGCCGGTGTTTTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATCAGGC
180747083 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATCAGGC
* *
180747124 TTATTGCCTAGCAGGCTTTGTTCCGGTGTTTTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATCAGGC
180747165 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATCAGGC
* * *
180747206 TTATTACCTAGCAGGCTTTGTGTCGGTGTATTAAATCAGGT
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATCAGGC
* *
180747247 TTATTGCCTAGTAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATCAGGC
* * * *
180747288 TTATTGCCTAGCAGGCTTTATATCTCAGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGT-GC-CGGTGTATTAAATCAGGC
* * *
180747331 TTATTGCCTAGTAGGCTCTGTGCCGGTGTATTATA-CTAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATC-AGGC
180747372 TT-TATGCCTAGCA
1 TTAT-TGCCTAGCA
180747385 AATTTTATGT
Statistics
Matches: 275, Mismatches: 23, Indels: 8
0.90 0.08 0.03
Matches are distributed among these distances:
40 2 0.01
41 236 0.86
42 2 0.01
43 35 0.13
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.37
Consensus pattern (41 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATCAGGC
Found at i:180748948 original size:26 final size:26
Alignment explanation
Indices: 180748917--180748972 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
180748907 TTAAATGCCC
*
180748917 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
180748943 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
180748969 ATCA
1 ATCA
180748973 ATTTTTATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:180754007 original size:27 final size:26
Alignment explanation
Indices: 180753972--180754083 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
180753962 AGCATGGCTG
* *
180753972 CCAGAACAGAAAATGTGACAGAGTCA
1 CCAGAACAGAAAATGTGGCAGAGCCA
*
180753998 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGAAAAT-GTGGCAGAGCCA
180754026 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGAAA-ATGTGGCAGAGCCA
* * *
180754053 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGA-AAATGTGGCAGAGCCA
180754080 CCAG
1 CCAG
180754084 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 5 0.07
27 51 0.68
28 19 0.25
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.14
Consensus pattern (26 bp):
CCAGAACAGAAAATGTGGCAGAGCCA
Found at i:180754032 original size:54 final size:54
Alignment explanation
Indices: 180753972--180754083 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
180753962 AGCATGGCTG
*
180753972 CCAGAACAGAAA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * *
180754026 CCAGAACAGAAATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
180754080 CCAG
1 CCAG
180754084 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.14
Consensus pattern (54 bp):
CCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:180755518 original size:24 final size:24
Alignment explanation
Indices: 180755491--180755561 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
180755481 CTAGATTTCC
** *
180755491 TCCCTTATCTGCTCCTAAATCCTT
1 TCCCTTATCAACTCCTAAATCCTA
180755515 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
180755539 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
180755562 CTCCTGACAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.24, C:0.38, G:0.01, T:0.37
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:180755531 original size:48 final size:48
Alignment explanation
Indices: 180755468--180755561 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
180755458 CACCTCTGTT
* * **
180755468 CCTTGATCAGCTCCTAGATTTCC-TCCCTTATCTGCTCCTAAATCCTTTC
1 CCTTGATCAACTCCTA-A-ATCCATCCCTTATCAACTCCTAAATCCTTTC
180755517 CCTT-ATCAACTCCTAAATCCTATCCCTTATCAACTCCTAAATCCT
1 CCTTGATCAACTCCTAAATCC-ATCCCTTATCAACTCCTAAATCCT
180755562 CTCCTGACAG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
47 1 0.03
48 31 0.79
49 4 0.10
ACGTcount: A:0.22, C:0.37, G:0.04, T:0.36
Consensus pattern (48 bp):
CCTTGATCAACTCCTAAATCCATCCCTTATCAACTCCTAAATCCTTTC
Found at i:180761826 original size:27 final size:26
Alignment explanation
Indices: 180761791--180761902 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
180761781 AGCATGGCTG
* *
180761791 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
180761817 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
180761845 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
180761872 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
180761899 CCAG
1 CCAG
180761903 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:180761883 original size:54 final size:54
Alignment explanation
Indices: 180761791--180761902 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
180761781 AGCATGGCTG
* *
180761791 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
180761845 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
180761899 CCAG
1 CCAG
180761903 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:180763341 original size:24 final size:24
Alignment explanation
Indices: 180763314--180763384 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
180763304 CTAGATTTCC
**
180763314 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
180763338 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
180763362 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
180763385 CTCCTGACAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.25, C:0.38, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:180764921 original size:27 final size:27
Alignment explanation
Indices: 180764891--180765028 Score: 133
Period size: 27 Copynumber: 5.1 Consensus size: 27
180764881 ACGAAGTCAT
* *
180764891 CAGATACAAATATTGTGGCAGAGCTAC
1 CAGATACAGATATTGTGGCAGAGCCAC
180764918 CAGAATA-A-ATATATGTGGCAGAGCCAC
1 CAG-ATACAGATAT-TGTGGCAGAGCCAC
* * *
180764945 CAAAT-CAGATAATTTTGGCATAGCCAC
1 CAGATACAGAT-ATTGTGGCAGAGCCAC
*
180764972 CAG-GACAGATATATGTGGCAGAGCCAC
1 CAGATACAGATAT-TGTGGCAGAGCCAC
*
180764999 CAGAT-CAGATAATTGTGGCATAGCCAC
1 CAGATACAGAT-ATTGTGGCAGAGCCAC
180765026 CAG
1 CAG
180765029 GACGCTTCCT
Statistics
Matches: 92, Mismatches: 10, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
26 9 0.10
27 76 0.83
28 7 0.08
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.20
Consensus pattern (27 bp):
CAGATACAGATATTGTGGCAGAGCCAC
Found at i:180764984 original size:54 final size:54
Alignment explanation
Indices: 180764902--180765031 Score: 197
Period size: 54 Copynumber: 2.4 Consensus size: 54
180764892 AGATACAAAT
* * * * *
180764902 ATTGTGGCAGAGCTACCAGAATAAATATATGTGGCAGAGCCACCAAATCAGATA
1 ATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACCAAATCAGATA
* *
180764956 ATTTTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACCAGATCAGATA
1 ATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACCAAATCAGATA
180765010 ATTGTGGCATAGCCACCAGGAC
1 ATTGTGGCATAGCCACCAGGAC
180765032 GCTTCCTCCA
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 68 1.00
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.20
Consensus pattern (54 bp):
ATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACCAAATCAGATA
Found at i:180766653 original size:26 final size:26
Alignment explanation
Indices: 180766623--180766704 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
180766613 TGAAATGCCC
180766623 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
180766649 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
180766675 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
180766701 ATCA
1 ATCA
180766705 ATTTTTATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:180773631 original size:119 final size:119
Alignment explanation
Indices: 180773416--180773633 Score: 318
Period size: 119 Copynumber: 1.8 Consensus size: 119
180773406 TTCGGATGAT
* *
180773416 ACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTG
* *
180773481 TGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
66 AGCGAGTTACTATATCCGGGCTAACTCCCGAAGGCATTTGTGCGAGTTACTATA
*
180773535 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
180773599 TGAGCTAG-TAGCTATATCC-GGCTAAACT-CCGAAGG
64 TGAGCGAGTTA-CTATATCCGGGCT-AACTCCCGAAGG
180773634 TACTTGGTTT
Statistics
Matches: 89, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
118 2 0.02
119 58 0.65
120 29 0.33
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (119 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTG
AGCGAGTTACTATATCCGGGCTAACTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:180773633 original size:39 final size:40
Alignment explanation
Indices: 180773417--180773623 Score: 314
Period size: 40 Copynumber: 5.2 Consensus size: 40
180773407 TCGGATGATA
* *
180773417 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
180773457 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
180773496 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
180773536 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
180773576 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
180773616 CC-GGCTAA
1 CCGGGCTAA
180773624 ACTCCGAAGG
Statistics
Matches: 158, Mismatches: 6, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 43 0.27
40 115 0.73
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:180781005 original size:40 final size:40
Alignment explanation
Indices: 180780961--180781051 Score: 105
Period size: 40 Copynumber: 2.2 Consensus size: 40
180780951 TTTTACATTC
180780961 GCGGCGTTTTCAAT-AAAACACCGCAAAAAACAG-AGCAATA
1 GCGGCGTTTT-AATCAAAACACCGCAAAAAACAGAAG-AATA
* * * *
180781001 GCGGCGTTTTGATCAAAACGCCGCTAAAAACTGAAGAATA
1 GCGGCGTTTTAATCAAAACACCGCAAAAAACAGAAGAATA
180781041 GCGGCGCTTTT
1 GCGGCG-TTTT
180781052 TGGAAAAACG
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
39 2 0.05
40 36 0.82
41 6 0.14
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (40 bp):
GCGGCGTTTTAATCAAAACACCGCAAAAAACAGAAGAATA
Found at i:180781097 original size:41 final size:41
Alignment explanation
Indices: 180781039--180781393 Score: 458
Period size: 41 Copynumber: 8.6 Consensus size: 41
180781029 AACTGAAGAA
180781039 TAGCGGCGCTTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
1 TAGCGGCGC-TTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
** * * * *
180781081 TAGCTACGCTTCTGGAAAAACGCTGTTATAGGTAGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
* *
180781122 TAGCGGCGCTTTTGTAAAAACGCCGCTATAGGTCAAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
* * * *
180781163 TAGCGGCGATTCTGGAAAAACGCTGCTATAGGTAGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
* * *
180781204 TAGCGGCGCTTTTGTAAAAACGCCGCTATAGGTAGAGATTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
* * * *
180781245 TAGCGGCGCTTTTGTAAAAATGCCGCTATAGGCCGATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
* * * * *
180781286 TAGCGGCGCTTTTGTAAAAACGGCGCTATAGGCCTATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
* *
180781327 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
*
180781368 TAGCGGCACTTTTGGAAAAACGCCGC
1 TAGCGGCGCTTTTGGAAAAACGCCGC
180781394 AAAAAAGTAA
Statistics
Matches: 276, Mismatches: 37, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
41 269 0.97
42 7 0.03
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
Found at i:180781727 original size:18 final size:18
Alignment explanation
Indices: 180781700--180781748 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
180781690 TTGTCCCTTG
180781700 TTAT-ATATATATTAA-A
1 TTATAATATATATTAAGA
*
180781716 CTTCTAATATATATTAAGA
1 -TTATAATATATATTAAGA
180781735 TTATAATATATATT
1 TTATAATATATATT
180781749 TAGGGTGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 3 0.11
18 24 0.86
19 1 0.04
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (18 bp):
TTATAATATATATTAAGA
Found at i:180782184 original size:15 final size:15
Alignment explanation
Indices: 180782164--180782198 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
180782154 GATTTTAATG
*
180782164 TATAAGATAAATGTA
1 TATAAGATAAATATA
180782179 TATAAGATAAATATA
1 TATAAGATAAATATA
180782194 TATAA
1 TATAA
180782199 ATTATTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (15 bp):
TATAAGATAAATATA
Found at i:180782237 original size:24 final size:23
Alignment explanation
Indices: 180782170--180782237 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 23
180782160 AATGTATAAG
* *
180782170 ATAAATGTATATAAGATAAATATAT
1 ATAAAT-TATATATGA-AAAAATAT
* *
180782195 ATAAATTATTATTTTAAAAAATAT
1 ATAAATTA-TATATGAAAAAATAT
180782219 ATAAATATATATATGAAAA
1 ATAAAT-TATATATGAAAA
180782238 GTGGTTTAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
24 23 0.66
25 12 0.34
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (23 bp):
ATAAATTATATATGAAAAAATAT
Found at i:180785151 original size:635 final size:635
Alignment explanation
Indices: 180783960--180785284 Score: 2569
Period size: 635 Copynumber: 2.1 Consensus size: 635
180783950 GATTGGGAGG
180783960 TAAACTGAAATATATTTGGTGCTACTCTTATAATCTTACATCTGTTCTAGGTACTTATCTTTTAT
1 TAAACTGAAATATATTTGGTGCTACTCTTATAATCTTACATCTGTTCTAGGTACTTATCTTTTAT
*
180784025 TTGCAAGAAACAGATTTAGGTAATGGAGGATGTATGCCTGTGTGTTTGTGTCTCTATATATGTAT
66 TTGCAAGAAACAGATTTAGGTAATGGAAGATGTATGCCTGTGTGTTTGTGTCTCTATATATGTAT
*
180784090 GTATTTGGTACTAGATGAAATCTTTACTCCAGTTTTGAAATATAGACCAGGTTTTGCATACATTG
131 GTATTTGGTACTAGATGAAAGCTTTACTCCAGTTTTGAAATATAGACCAGGTTTTGCATACATTG
180784155 ATCATTTTCTGGCTCTTTTCCTTCGAATACATGGTTCTCTTGAAATTAAATGCTCAGGTACTTTC
196 ATCATTTTCTGGCTCTTTTCCTTCGAATACATGGTTCTCTTGAAATTAAATGCTCAGGTACTTTC
180784220 TGCATATGCTGTGATTCTTATTAGATAAGTTATAAATCAACAGTTATGTTAGTTTTGATCAAGGC
261 TGCATATGCTGTGATTCTTATTAGATAAGTTATAAATCAACAGTTATGTTAGTTTTGATCAAGGC
*
180784285 CTCTGTAAACATAAAGTTGGTATTCTGGTTAGGAGAAGTTAATGTTTATGAGTTTTGTTGAGTAT
326 CTCTGTAAACATAAAGTTGGTATTCTGGTTAGGAGAAGTTAATGTTTATGAGTTTTGTGGAGTAT
*
180784350 GATTCTGCACATGCAAAGTTGGTTTGTTTAAAGTTGTGCATTTTCATGTTTACATACTAATGGTG
391 GATTCTGCACATGCAAAGTTGGTTTGTTTAAAGCTGTGCATTTTCATGTTTACATACTAATGGTG
180784415 ATTCCATTTTTGTTTTTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTCTGTGTT
456 ATTCCATTTTTGTTTTTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTCTGTGTT
*
180784480 TACTGTGCAGTTTTGCCATATTTTGCTAAGGTGTATAGCTTCATTGGCAGTGTCTTTGATCCTGG
521 TACTGTGCAGTTTTGCCATATTTTGCTAAAGTGTATAGCTTCATTGGCAGTGTCTTTGATCCTGG
180784545 TACAAGTGGGCACTTGCAAAACTGATATAGGTAAAGTTCCTATATTTGCT
586 TACAAGTGGGCACTTGCAAAACTGATATAGGTAAAGTTCCTATATTTGCT
180784595 TAAACTGAAATATATTTGGTGCTACTCTTATAATCTTACATCTGTTCTAGGTACTTATCTTTTAT
1 TAAACTGAAATATATTTGGTGCTACTCTTATAATCTTACATCTGTTCTAGGTACTTATCTTTTAT
180784660 TTGCAAGAAACAGATTTAGGTAATGGAAGATGTATGCCTGTGTGTTTGTGTCTCTATATATGTAT
66 TTGCAAGAAACAGATTTAGGTAATGGAAGATGTATGCCTGTGTGTTTGTGTCTCTATATATGTAT
180784725 GTATTTGGTACTAGATGAAAGCTTTACTCCAGTTTTGAAATATAGACCAGGTTTTGCATACATTG
131 GTATTTGGTACTAGATGAAAGCTTTACTCCAGTTTTGAAATATAGACCAGGTTTTGCATACATTG
*
180784790 ATCATTTTCTGGTTCTTTTCCTTCGAATACATGGTTCTCTTGAAATTAAATGCTCAGGTACTTTC
196 ATCATTTTCTGGCTCTTTTCCTTCGAATACATGGTTCTCTTGAAATTAAATGCTCAGGTACTTTC
180784855 TGCATATGCTGTGATTCTTATTAGATAAGTTATAAATCAACAGTTATGTTAGTTTTGATCAAGGC
261 TGCATATGCTGTGATTCTTATTAGATAAGTTATAAATCAACAGTTATGTTAGTTTTGATCAAGGC
180784920 CTCTGTAAACATAAAGTTGGTATTCTGGTTAGGAGAAGTTAATGTTTATGAGTTTTGTGGAGTAT
326 CTCTGTAAACATAAAGTTGGTATTCTGGTTAGGAGAAGTTAATGTTTATGAGTTTTGTGGAGTAT
180784985 GATTCTGCACATGCAAAGTTGGTTTGTTTAAAGCTGTGCATTTTCATGTTTACATACTAATGGTG
391 GATTCTGCACATGCAAAGTTGGTTTGTTTAAAGCTGTGCATTTTCATGTTTACATACTAATGGTG
180785050 ATTCCATTTTTGTTTTTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTCTGTGTT
456 ATTCCATTTTTGTTTTTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTCTGTGTT
*
180785115 TACTGTGCAGTTTTGCCATATTTTGCTAAAGTGTATAGCTTCATTGGTAGTGTCTTTGATCCTGG
521 TACTGTGCAGTTTTGCCATATTTTGCTAAAGTGTATAGCTTCATTGGCAGTGTCTTTGATCCTGG
*
180785180 TACAAGTGGGCACTTGCAAAACTGATATAGGTAAAGTTTCTATATTTGCT
586 TACAAGTGGGCACTTGCAAAACTGATATAGGTAAAGTTCCTATATTTGCT
*
180785230 TAAACTGAAATATATTTGGTGCTACTCTTATAATCTTACATATGTTCTAGGTACT
1 TAAACTGAAATATATTTGGTGCTACTCTTATAATCTTACATCTGTTCTAGGTACT
180785285 ATTGAGCACC
Statistics
Matches: 681, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
635 681 1.00
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (635 bp):
TAAACTGAAATATATTTGGTGCTACTCTTATAATCTTACATCTGTTCTAGGTACTTATCTTTTAT
TTGCAAGAAACAGATTTAGGTAATGGAAGATGTATGCCTGTGTGTTTGTGTCTCTATATATGTAT
GTATTTGGTACTAGATGAAAGCTTTACTCCAGTTTTGAAATATAGACCAGGTTTTGCATACATTG
ATCATTTTCTGGCTCTTTTCCTTCGAATACATGGTTCTCTTGAAATTAAATGCTCAGGTACTTTC
TGCATATGCTGTGATTCTTATTAGATAAGTTATAAATCAACAGTTATGTTAGTTTTGATCAAGGC
CTCTGTAAACATAAAGTTGGTATTCTGGTTAGGAGAAGTTAATGTTTATGAGTTTTGTGGAGTAT
GATTCTGCACATGCAAAGTTGGTTTGTTTAAAGCTGTGCATTTTCATGTTTACATACTAATGGTG
ATTCCATTTTTGTTTTTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTCTGTGTT
TACTGTGCAGTTTTGCCATATTTTGCTAAAGTGTATAGCTTCATTGGCAGTGTCTTTGATCCTGG
TACAAGTGGGCACTTGCAAAACTGATATAGGTAAAGTTCCTATATTTGCT
Found at i:180791191 original size:372 final size:372
Alignment explanation
Indices: 180785722--180799994 Score: 28204
Period size: 372 Copynumber: 38.5 Consensus size: 372
180785712 CTTGTCCATT
* *
180785722 AAAATTACAACAATAGCTGACTTTCACTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180785787 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCT-CCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180785851 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180785916 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180785981 CGATTCTTTTTTGATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180786045 ATATTTAATATTTTTAAATTTC--TAAAAGTTATAACTACTTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTAC-TTTTATC
*
180786091 AAAATTACAACAATAGCTGATCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180786156 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180786221 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180786286 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180786351 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180786416 ATATTTAATATTTTTAAATTTC--TACAAAGTTATAACTACTTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTA-AAAGTTATAACTAC-TTTTATC
*
180786463 AAAATTACAACAATAGCTGATCTTCTCTCCAA-CTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180786527 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180786592 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180786657 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180786722 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
*
180786787 ATATTTAATATTTTTAAATTTC-TAAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180786833 AAAATTACAACAATAGCTGA-CTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180786897 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180786962 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180787027 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180787092 CGATTCTTTTTTGATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180787156 ATATTTAATATTTTTAAATTTC--TACAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTA-AAAGTTATAACTACTTTTATC
180787202 AAAATTACAACAATAGCTGA--TTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180787265 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180787330 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180787395 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180787460 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180787525 ATATTTAATATTTTTAAATTTC--TAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180787570 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180787635 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180787700 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180787765 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180787830 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180787895 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180787942 AAAATTACAACAATAGCTGA-CTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180788006 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180788071 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180788136 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180788201 CGATTCTTTTTTGATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180788265 ATATTTAATATTTTTAAATTTC--TAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180788310 AAAATTACAACAATAGCTGA-CTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180788374 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180788439 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180788504 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180788569 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180788634 ATATTTAATATTTTTAAATTTC--TAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180788679 AAAATTACAACAATAGCTGA-CTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180788743 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180788808 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180788873 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180788938 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180789003 ATATTTAATATTTTTAAATTTC--TAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
*
180789048 AAAATTACAACAATAGCTGATCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180789113 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180789178 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180789243 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180789308 CGATTCTTTTTTGATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180789372 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180789419 AAAATTACAACAATAGCTGA-CTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180789483 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180789548 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180789613 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180789678 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180789743 ATATTTAATATTTTTAAATTTC--TAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180789788 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180789853 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180789918 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180789983 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180790048 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180790113 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180790160 AAAATTACAACAATAGCTGA-CTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180790224 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180790289 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180790354 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180790419 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180790484 ATATTTAATATTTTTAAATTTC--TAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180790529 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180790594 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180790659 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180790724 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180790789 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180790854 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180790901 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180790966 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180791031 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180791096 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180791161 CGATTCTTTTTTGATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180791225 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180791272 AAAATTACAACAATAGCTGA-CTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180791336 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180791401 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180791466 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180791531 CGATTCTTTTTTGATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180791595 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180791642 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180791707 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180791772 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180791837 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180791902 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180791967 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180792014 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180792079 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180792144 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180792209 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180792274 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180792339 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180792386 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180792451 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180792516 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180792581 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180792646 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180792711 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180792758 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180792823 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180792888 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180792953 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180793018 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180793083 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180793130 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180793195 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180793260 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180793325 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180793390 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180793455 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180793502 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180793567 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180793632 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180793697 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180793762 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180793827 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180793874 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180793939 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180794004 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180794069 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180794134 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180794199 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180794246 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180794311 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180794376 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180794441 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180794506 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180794571 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180794618 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180794683 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180794748 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180794813 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180794878 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180794943 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180794990 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180795055 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180795120 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180795185 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180795250 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180795315 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180795362 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180795427 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180795492 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180795557 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180795622 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180795687 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180795734 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180795799 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180795864 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180795929 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180795994 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180796059 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180796106 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180796171 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180796236 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180796301 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180796366 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180796431 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180796478 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180796543 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180796608 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180796673 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180796738 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180796803 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180796850 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180796915 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180796980 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180797045 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180797110 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180797175 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180797222 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180797287 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180797352 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180797417 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180797482 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180797547 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180797594 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180797659 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180797724 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180797789 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180797854 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180797919 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180797966 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180798031 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180798096 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180798161 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180798226 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180798291 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180798338 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180798403 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180798468 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180798533 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180798598 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180798663 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180798710 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180798775 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180798840 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180798905 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180798970 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180799035 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180799082 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180799147 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180799212 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180799277 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180799342 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180799407 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180799454 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180799519 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180799584 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
180799649 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
180799714 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
180799779 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
180799826 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
180799891 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
180799956 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
180799995 TGTTTCAATT
Statistics
Matches: 13875, Mismatches: 5, Indels: 45
1.00 0.00 0.00
Matches are distributed among these distances:
368 634 0.05
369 871 0.06
370 2410 0.17
371 1444 0.10
372 8516 0.61
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (372 bp):
AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
Found at i:180800109 original size:24 final size:24
Alignment explanation
Indices: 180800082--180800149 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
180800072 ATTATTATTG
*
180800082 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
180800106 AAATATTATTC-TCCGTTTTATTAC
1 AAATATTA-TCGTCCGTTTTATCAC
180800130 AAATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
180800150 CCATTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.05
24 36 0.90
25 2 0.05
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.46
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:180800370 original size:15 final size:15
Alignment explanation
Indices: 180800326--180800381 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
180800316 AACGACATGT
180800326 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
180800342 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
180800355 ATATTATTTAATTAA
1 ATATTATTTAATTAA
180800370 ATATTATTTAAT
1 ATATTATTTAAT
180800382 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:180800498 original size:9 final size:9
Alignment explanation
Indices: 180800486--180800727 Score: 154
Period size: 9 Copynumber: 26.6 Consensus size: 9
180800476 TATTTGATAT
*
180800486 CATAATTTA
1 CATAACTTA
180800495 CATAACTTA
1 CATAACTTA
* *
180800504 TATAACATA
1 CATAACTTA
*
180800513 TATAACTTA
1 CATAACTTA
180800522 CATAACTTA
1 CATAACTTA
* *
180800531 TATAACATA
1 CATAACTTA
180800540 CATAACTTA
1 CATAACTTA
*
180800549 TATAACTTA
1 CATAACTTA
*
180800558 TATAACTTA
1 CATAACTTA
* *
180800567 GATAA-ATA
1 CATAACTTA
*
180800575 -TTAACTTA
1 CATAACTTA
180800583 CATAACTTA
1 CATAACTTA
180800592 CATAATACTTA
1 CAT-A-ACTTA
* *
180800603 AATATATTTTATA
1 CATA-A--CT-TA
*
180800616 TCATAATTTA
1 -CATAACTTA
180800626 CATAACTTA
1 CATAACTTA
180800635 CATAACTTA
1 CATAACTTA
*
180800644 TATAACTTA
1 CATAACTTA
* *
180800653 GATAA-ATA
1 CATAACTTA
* *
180800661 TATAATTTA
1 CATAACTTA
*
180800670 CATAA-ATA
1 CATAACTTA
* *
180800678 TATATCATATA
1 CATAAC-T-TA
180800689 CATAACTTA
1 CATAACTTA
180800698 CATAA--TA
1 CATAACTTA
*
180800705 CATAAATTA
1 CATAACTTA
180800714 CATAACTTA
1 CATAACTTA
180800723 CATAA
1 CATAA
180800728 TACTTAAATA
Statistics
Matches: 187, Mismatches: 32, Indels: 28
0.76 0.13 0.11
Matches are distributed among these distances:
7 10 0.05
8 15 0.08
9 133 0.71
10 7 0.04
11 15 0.08
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:180800694 original size:131 final size:131
Alignment explanation
Indices: 180800455--180800751 Score: 402
Period size: 131 Copynumber: 2.3 Consensus size: 131
180800445 TGAAATAAAA
* * *
180800455 AACTTACATAATACATAAATATATTTGATATCATAATTTACATAACTTATATAACATATATAACT
1 AACTTACATAATACTTAAATATATTTCATATCATAATTTACATAACTTACATAACATATATAACT
* * * * * *
180800520 TACATAACTTATATAACATACATAACTTATATAACTTATATAACTTAGATAAATA-TTAACTTAC
66 TACATAACATATATAACATACATAAATTATATAACTTACATAACTTACAT-AATACATAAATTAC
180800584 AT
130 AT
* *
180800586 AACTTACATAATACTTAAATATATTTTATATCATAATTTACATAACTTACATAACTTATATAACT
1 AACTTACATAATACTTAAATATATTTCATATCATAATTTACATAACTTACATAACATATATAACT
* ** *
180800651 TAGATAA-ATATATAATTTACATAAA-TATATATCATATACATAACTTACATAATACATAAATTA
66 TACATAACATATATAACATACATAAATTATATAAC-T-TACATAACTTACATAATACATAAATTA
180800714 CAT
129 CAT
*
180800717 AACTTACATAATACTTAAATATATATCATATCATA
1 AACTTACATAATACTTAAATATATTTCATATCATA
180800752 CATAACTAGT
Statistics
Matches: 147, Mismatches: 16, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
129 7 0.05
130 19 0.13
131 121 0.82
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (131 bp):
AACTTACATAATACTTAAATATATTTCATATCATAATTTACATAACTTACATAACATATATAACT
TACATAACATATATAACATACATAAATTATATAACTTACATAACTTACATAATACATAAATTACA
T
Found at i:180800721 original size:25 final size:25
Alignment explanation
Indices: 180800633--180800737 Score: 88
Period size: 25 Copynumber: 4.1 Consensus size: 25
180800623 TTACATAACT
* *
180800633 TACATAACTTATATAACTTAGATAAA
1 TACATAACTTACATAA-TTACATAAA
* * * *
180800659 TATATAATTTACATAAATATATATCATA
1 TACATAACTTACAT-AAT-TACAT-AAA
180800687 TACATAACTTACATAA-TACATAAA
1 TACATAACTTACATAATTACATAAA
*
180800711 TTACATAACTTACATAA-TACTTAAA
1 -TACATAACTTACATAATTACATAAA
180800736 TA
1 TA
180800738 TATATCATAT
Statistics
Matches: 65, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
24 4 0.06
25 27 0.42
26 12 0.18
27 8 0.12
28 14 0.22
ACGTcount: A:0.50, C:0.12, G:0.01, T:0.36
Consensus pattern (25 bp):
TACATAACTTACATAATTACATAAA
Found at i:180806398 original size:21 final size:21
Alignment explanation
Indices: 180806365--180806415 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
180806355 ACAACTTAGA
*
180806365 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
180806386 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
180806407 GCAGAGGCA
1 GCAGAGGCA
180806416 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:180806716 original size:31 final size:31
Alignment explanation
Indices: 180806670--180806736 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
180806660 TGGTTGTATT
* *
180806670 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
180806701 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
180806732 TTTTA
1 TTTTA
180806737 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:180806900 original size:42 final size:42
Alignment explanation
Indices: 180806809--180806925 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
180806799 GTAAAAAAAG
*
180806809 CGCGCT-AAAGCCTTGA-CTTTAGCGGCGCTTTTCCCACAAG
1 CGCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
180806849 CGCCACTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CG-CGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
180806892 CGCGCTAAAAGCCTTGACCTTTAGCAGCGTTTTT
1 CGCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT
180806926 TTCCAATAAA
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
40 2 0.03
41 3 0.04
42 39 0.57
43 25 0.36
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (42 bp):
CGCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:180807887 original size:40 final size:40
Alignment explanation
Indices: 180807743--180807924 Score: 262
Period size: 39 Copynumber: 4.6 Consensus size: 40
180807733 GGATTGATAC
* * * *
180807743 CCGGGCTAAGTCCCGAAGGAATTTGTGCTAGTGACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * *
180807782 TCGAGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
180807821 CCGGGATAAGT-CCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
180807860 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
180807900 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
180807925 AGCTAGTAGC
Statistics
Matches: 128, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
38 23 0.18
39 53 0.41
40 52 0.41
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:180807938 original size:40 final size:40
Alignment explanation
Indices: 180807743--180807947 Score: 267
Period size: 40 Copynumber: 5.2 Consensus size: 40
180807733 GGATTGATAC
* * *
180807743 CCGGGCTAAGTCCCGAAGGAATTTGTGCTAGTGACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
180807782 TCGAGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
180807821 CCGGGATAAGT-CCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
180807860 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
180807900 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
180807940 CC-GGCTAA
1 CCGGGCTAA
180807948 ACTCCGAAGG
Statistics
Matches: 147, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
38 23 0.16
39 61 0.41
40 63 0.43
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:180807946 original size:79 final size:78
Alignment explanation
Indices: 180807743--180807957 Score: 276
Period size: 79 Copynumber: 2.7 Consensus size: 78
180807733 GGATTGATAC
* *
180807743 CCGGGCTAAGTCCCGAAGGAATTTGTGCTAGT-GACTA-ATTCGAGCTAAGCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAG-CTATATCCG-GCTAAGCCCGAAGGCATTTG
*
180807806 TGCGAGTTACTATAT
64 TGCGAGTTACTATAA
* * *
180807821 CCGGGATAAGT-CCGAAGGCATTTGTGCAAGTTA-CTATAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TAGCTATATCC-GGCTAAG-CCCGAAGGCATTT
180807884 GTGCGAGTTACTATAA
63 GTGCGAGTTACTATAA
* *
180807900 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTAGCTATATCCGGCTAAACTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGCTATATCCGGCTAAGC-CCGAAGG
180807958 TACTTGGTTT
Statistics
Matches: 118, Mismatches: 11, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
77 20 0.17
78 20 0.17
79 54 0.46
80 24 0.20
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGCTATATCCGGCTAAGCCCGAAGGCATTTGTG
CGAGTTACTATAA
Found at i:180818479 original size:28 final size:28
Alignment explanation
Indices: 180818414--180818512 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
180818404 TCATGAATTG
* * *
180818414 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
180818443 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
180818471 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
180818499 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
180818513 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:180821347 original size:37 final size:37
Alignment explanation
Indices: 180821294--180821384 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
180821284 TATAAAAGAA
180821294 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
180821331 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
180821368 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
180821385 TTCCAAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:180821535 original size:49 final size:49
Alignment explanation
Indices: 180821480--180821792 Score: 554
Period size: 49 Copynumber: 6.4 Consensus size: 49
180821470 TTTTACATTA
180821480 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
180821529 GCCATTAGGCCTTATCACATATACATACACTTTCACATACACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
180821578 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
180821627 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
180821676 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
180821725 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
180821774 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
180821793 CATATATGTA
Statistics
Matches: 256, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 256 1.00
ACGTcount: A:0.30, C:0.33, G:0.09, T:0.28
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:180833581 original size:43 final size:43
Alignment explanation
Indices: 180833453--180833594 Score: 148
Period size: 42 Copynumber: 3.3 Consensus size: 43
180833443 ATATGTGTTA
** *
180833453 TCATGTAAGACCACATCTGGGAC-GTTGGCATCGAT-TTGTGATT
1 TCATGTAAGACCATGTCTAGGACAG-TGGCATCGATATT-TGATT
* * * *
180833496 TACGTGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATT
1 T-CATGTAAGACCATGTCTAGGACAGTGGCATCGATATTTGATT
180833539 TCATGTAAGACTC-TGTCTAGGACAGTGGCATCGATATTTGATT
1 TCATGTAAGAC-CATGTCTAGGACAGTGGCATCGATATTTGATT
*
180833582 ACATGTAAGACCA
1 TCATGTAAGACCA
180833595 CATCTGGGAC
Statistics
Matches: 83, Mismatches: 10, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
42 28 0.34
43 27 0.33
44 28 0.34
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
TCATGTAAGACCATGTCTAGGACAGTGGCATCGATATTTGATT
Found at i:180833611 original size:43 final size:43
Alignment explanation
Indices: 180833441--180833612 Score: 174
Period size: 43 Copynumber: 4.0 Consensus size: 43
180833431 CATAGGATTC
*
180833441 CGATATGTG-TTATCATGTAAGACCACATCTGGGACGTTGGCAT
1 CGATATTTGATTA-CATGTAAGACCACATCTGGGACGTTGGCAT
* ** *
180833484 CGAT-TTGTGATTTACGTGTAAGACCATGTCTGGGACATTGGCAT
1 CGATATT-TGA-TTACATGTAAGACCACATCTGGGACGTTGGCAT
* * ** *
180833528 CG-TATATGATTTCATGTAAGACTC-TGTCTAGGACAG-TGGCAT
1 CGATATTTGATTACATGTAAGAC-CACATCTGGGAC-GTTGGCAT
180833570 CGATATTTGATTACATGTAAGACCACATCTGGGACGTTGGCAT
1 CGATATTTGATTACATGTAAGACCACATCTGGGACGTTGGCAT
180833613 TGTACAAGCT
Statistics
Matches: 105, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 31 0.30
43 42 0.40
44 29 0.28
45 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
CGATATTTGATTACATGTAAGACCACATCTGGGACGTTGGCAT
Found at i:180841355 original size:29 final size:27
Alignment explanation
Indices: 180841321--180841423 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
180841311 TACTCAATCA
*
180841321 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
180841350 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
180841379 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
180841408 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
180841424 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:180851712 original size:40 final size:39
Alignment explanation
Indices: 180851585--180851714 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
180851575 ATGCTGGAAA
* *
180851585 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
180851625 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
180851665 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
180851705 TTATATCCGG
1 TTATATCCGG
180851715 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:180859773 original size:40 final size:39
Alignment explanation
Indices: 180859646--180859775 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
180859636 ATGCTGGAAA
* *
180859646 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
180859686 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
180859726 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
180859766 TTATATCCGG
1 TTATATCCGG
180859776 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:180867835 original size:40 final size:39
Alignment explanation
Indices: 180867708--180867837 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
180867698 ATGCTGGAAA
* *
180867708 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
180867748 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
180867788 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
180867828 TTATATCCGG
1 TTATATCCGG
180867838 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:180876497 original size:40 final size:40
Alignment explanation
Indices: 180876389--180876598 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
180876379 CGGGATTTAA
* * * * *
180876389 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
180876429 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
180876469 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
180876509 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
180876549 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
180876589 CCGGATATAT
1 CCGGATATAT
180876599 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:180884631 original size:40 final size:40
Alignment explanation
Indices: 180884523--180884732 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
180884513 CGGGATTTAA
* * * * *
180884523 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
180884563 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
180884603 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
180884643 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
180884683 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
180884723 CCGGATATAT
1 CCGGATATAT
180884733 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:180888912 original size:29 final size:29
Alignment explanation
Indices: 180888884--180888984 Score: 148
Period size: 29 Copynumber: 3.5 Consensus size: 29
180888874 CCTCCGAGCT
** * * *
180888884 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
180888913 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
180888942 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
180888971 CGCACACTTAGTGC
1 CGCACACTTAGTGC
180888985 GATCTCGTCA
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:180896910 original size:29 final size:29
Alignment explanation
Indices: 180896882--180896983 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
180896872 CCTCCGAGCT
** * * *
180896882 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
180896911 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
180896940 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
180896969 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
180896984 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:180905575 original size:42 final size:42
Alignment explanation
Indices: 180905528--180905612 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
180905518 TTTTAAGAAC
180905528 ATATTAAATTTACAAATTATTTATATATGTAAATAAATTTAG
1 ATATTAAATTTACAAATTATTTATATATGTAAATAAATTTAG
180905570 ATATTAAATTTACAAATTATTTATATATGTAAATAAATTTAG
1 ATATTAAATTTACAAATTATTTATATATGTAAATAAATTTAG
180905612 A
1 A
180905613 ATAAAGGGAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (42 bp):
ATATTAAATTTACAAATTATTTATATATGTAAATAAATTTAG
Found at i:180905886 original size:13 final size:13
Alignment explanation
Indices: 180905868--180905895 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
180905858 AAACGAACTT
180905868 CAAAATAATTATG
1 CAAAATAATTATG
180905881 CAAAATAATTATG
1 CAAAATAATTATG
180905894 CA
1 CA
180905896 GATGAAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.11, G:0.07, T:0.29
Consensus pattern (13 bp):
CAAAATAATTATG
Found at i:180907977 original size:24 final size:24
Alignment explanation
Indices: 180907945--180907997 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
180907935 TATGTGTATT
180907945 CAGATTCAGATACAAATGCAGACA
1 CAGATTCAGATACAAATGCAGACA
* *
180907969 CAGATTCAGATACATATGCAGTCA
1 CAGATTCAGATACAAATGCAGACA
180907993 CAGAT
1 CAGAT
180907998 CCTACCCCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.21
Consensus pattern (24 bp):
CAGATTCAGATACAAATGCAGACA
Found at i:180911607 original size:14 final size:14
Alignment explanation
Indices: 180911588--180911625 Score: 76
Period size: 14 Copynumber: 2.7 Consensus size: 14
180911578 AAATACTTTA
180911588 TATGCAGATGTATG
1 TATGCAGATGTATG
180911602 TATGCAGATGTATG
1 TATGCAGATGTATG
180911616 TATGCAGATG
1 TATGCAGATG
180911626 CACCATTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.34
Consensus pattern (14 bp):
TATGCAGATGTATG
Found at i:180913448 original size:2 final size:2
Alignment explanation
Indices: 180913441--180913467 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
180913431 GTTGACATTG
180913441 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
180913468 TCGGCCCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:180913977 original size:30 final size:30
Alignment explanation
Indices: 180913941--180914043 Score: 120
Period size: 28 Copynumber: 3.5 Consensus size: 30
180913931 GACAAGATTG
* * *
180913941 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
*
180913971 GCACTAAGTGTGCGAGTTT--GATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* * *
180913999 GCACTAAGTGTGCGAGCTGAATATATATATA
1 GCACTAAGTGTGCGAGTTTAAAAT-TATATA
180914030 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
180914044 GATTCACTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 23 0.37
30 20 0.32
31 20 0.32
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:180914031 original size:31 final size:28
Alignment explanation
Indices: 180913970--180914043 Score: 96
Period size: 31 Copynumber: 2.5 Consensus size: 28
180913960 AAAATTGTAC
*
180913970 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTATGATTATAT
180913998 AGCACTAAGTGTGCGAGCTGAAT-ATATATAT
1 AGCACTAAGTGTGCGAG-T--ATGAT-TATAT
180914029 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
180914044 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
28 17 0.41
29 1 0.02
30 2 0.05
31 21 0.51
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTATGATTATAT
Found at i:180927170 original size:30 final size:30
Alignment explanation
Indices: 180927134--180927262 Score: 151
Period size: 30 Copynumber: 4.5 Consensus size: 30
180927124 GACAAGATTG
* * *
180927134 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
*
180927164 GCACTAAGTGTGCGAGTTT--GATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
180927192 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
180927222 GCACTAAGTGTGCGAG-CTGAAA--ATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
180927249 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
180927263 GATTCACTAT
Statistics
Matches: 87, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
27 19 0.22
28 23 0.26
29 3 0.03
30 42 0.48
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:180927225 original size:58 final size:57
Alignment explanation
Indices: 180927134--180927262 Score: 177
Period size: 58 Copynumber: 2.2 Consensus size: 57
180927124 GACAAGATTG
* * * * * **
180927134 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAAATATA
*
180927192 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAAATATA
180927249 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
180927263 GATTCACTAT
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
57 22 0.35
58 41 0.65
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAAATATA
Found at i:180933044 original size:40 final size:39
Alignment explanation
Indices: 180933000--180933180 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
180932990 GTTCAAAACA
* * ** * *
180933000 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
180933040 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
180933080 CCTTC-GGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
180933118 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
180933157 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
180933181 CTCGAACATT
Statistics
Matches: 126, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 33 0.26
39 56 0.44
40 37 0.29
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:180933139 original size:39 final size:39
Alignment explanation
Indices: 180933030--180933181 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
180933020 TATGGTAACC
* *
180933030 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
180933070 CGCACAATTGCCTTC-GGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
180933108 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
180933147 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
180933182 TCGAACATTC
Statistics
Matches: 104, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
38 33 0.32
39 57 0.55
40 14 0.13
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:180933883 original size:28 final size:28
Alignment explanation
Indices: 180933843--180933899 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
180933833 AATGTACTTG
180933843 CAATTTCACAACCATTCTTCAACATTTT
1 CAATTTCACAACCATTCTTCAACATTTT
180933871 CAATTTCACAACCATTCTTCAACATTTT
1 CAATTTCACAACCATTCTTCAACATTTT
180933899 C
1 C
180933900 TTCTTTAAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.30, G:0.00, T:0.39
Consensus pattern (28 bp):
CAATTTCACAACCATTCTTCAACATTTT
Found at i:180944273 original size:48 final size:48
Alignment explanation
Indices: 180944219--180944448 Score: 275
Period size: 48 Copynumber: 4.8 Consensus size: 48
180944209 CAACATATTA
* * *
180944219 ATGTGTGCTAGAGTAAGACCATGTTTGGGACATGGCATCGGCGATGAT
1 ATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAT
* * *
180944267 ATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCAATGAT
1 ATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAT
* *
180944315 ATGTGTGCCAGTGTAAGACCATGTGTGGGACATGGCATCGGCAATGAT
1 ATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAT
* * * * * **
180944363 CTGTATG-TCAGTGTAAGGCCATATCT-GGATATGGCATCGGTGATGAT
1 ATGTGTGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAT
* * *
180944410 ATGTTTGCTAGTATAAAACCATGTCTGGGACATGGCATC
1 ATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATC
180944449 AACACTGACA
Statistics
Matches: 154, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
47 36 0.23
48 118 0.77
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.28
Consensus pattern (48 bp):
ATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAT
Found at i:180944799 original size:6 final size:6
Alignment explanation
Indices: 180944788--180944815 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
180944778 ATGAATAAAC
180944788 TTATGT TTATGT TTATGT TTATGT TTAT
1 TTATGT TTATGT TTATGT TTATGT TTAT
180944816 TATGTCATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.14, T:0.68
Consensus pattern (6 bp):
TTATGT
Found at i:180951615 original size:27 final size:27
Alignment explanation
Indices: 180951592--180951648 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
180951582 AAATATTCTC
180951592 TAAATTAAT-AAATATTAATTTATTGA
1 TAAATTAATAAAATATTAATTTATTGA
* *
180951618 TAAATTAATAAAATATTCATTTATCGA
1 TAAATTAATAAAATATTAATTTATTGA
180951645 TAAA
1 TAAA
180951649 CAATTAGCCT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
26 9 0.32
27 19 0.68
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.42
Consensus pattern (27 bp):
TAAATTAATAAAATATTAATTTATTGA
Found at i:180956272 original size:79 final size:82
Alignment explanation
Indices: 180956156--180956340 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
180956146 ACGACTCGCT
** * *
180956156 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
180956219 GGGTTTAGTAACTT-GCA
65 GGATATAGTAACTTAGCA
* **
180956236 CAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCCTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
*
180956299 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
180956316 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
180956341 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
GATATAGTAACTTAGCA
Found at i:180956340 original size:40 final size:39
Alignment explanation
Indices: 180956149--180956340 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
180956139 GGATATAACG
* ** * *
180956149 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
180956189 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
180956229 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
180956268 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
180956308 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
180956341 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:180958642 original size:40 final size:40
Alignment explanation
Indices: 180958435--180958639 Score: 270
Period size: 40 Copynumber: 5.2 Consensus size: 40
180958425 TCTTCGGAAT
* ** *
180958435 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* *
180958474 TTAACCCGGGTATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
180958514 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
180958554 TTAACCCGGATATAGCAACTCGCACAAATACCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * * *
180958594 TTAGCCTGGATATAATC-ACTAGCATAAATGCCTTCGGGGC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
180958634 TTAGCC
1 TTAGCC
180958640 TGGGTATCAT
Statistics
Matches: 146, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 3 0.02
40 142 0.97
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:180972823 original size:40 final size:40
Alignment explanation
Indices: 180972778--180972867 Score: 112
Period size: 40 Copynumber: 2.2 Consensus size: 40
180972768 CGGAATACAA
*
180972778 CCGGATATAACCACGT-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCAC-AATTGCCTTCGGGTCTTAAC
* * *
180972818 CCGGATGTAGCCGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
180972858 CCGGATATAA
1 CCGGATATAA
180972868 TTTCCAGCAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
39 3 0.07
40 39 0.93
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
Found at i:180976391 original size:26 final size:26
Alignment explanation
Indices: 180976362--180976412 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
180976352 AATAAAAGAA
180976362 AACATTCAATATTTCTA-TTTAATTAT
1 AACATTCAATATTTC-AGTTTAATTAT
180976388 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAGTTTAATTA
180976413 GCATTAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.47
Consensus pattern (26 bp):
AACATTCAATATTTCAGTTTAATTAT
Found at i:180979868 original size:40 final size:40
Alignment explanation
Indices: 180979785--180979937 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
180979775 TCGAATGATG
* *
180979785 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
180979825 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
180979865 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
180979906 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
180979938 CGCTATATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 81 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:180981707 original size:26 final size:26
Alignment explanation
Indices: 180981678--180981728 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
180981668 AATAAAAGAA
180981678 AACATTCAATATTTCTA-TTTAATTAT
1 AACATTCAATATTTC-AGTTTAATTAT
180981704 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAGTTTAATTA
180981729 GCATTAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.47
Consensus pattern (26 bp):
AACATTCAATATTTCAGTTTAATTAT
Found at i:180983615 original size:40 final size:40
Alignment explanation
Indices: 180983560--180983769 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
180983550 AACATTGGAA
180983560 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
180983600 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
180983640 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
180983680 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
180983719 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
180983760 CTATATCCGG
1 ATATATCCGG
180983770 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:180991659 original size:40 final size:40
Alignment explanation
Indices: 180991604--180991813 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
180991594 AACATTGGAA
180991604 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
180991644 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
180991684 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
180991724 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
180991763 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
180991804 CTATATCCGG
1 ATATATCCGG
180991814 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:180995072 original size:26 final size:26
Alignment explanation
Indices: 180995043--180995093 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
180995033 AATAAAAGAA
180995043 AACATTCAATATTTCTA-TTTAATTAT
1 AACATTCAATATTT-TAGTTTAATTAT
180995069 AACATTCAATATTTTAGTTTAATTA
1 AACATTCAATATTTTAGTTTAATTA
180995094 GCATTAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.39, C:0.10, G:0.02, T:0.49
Consensus pattern (26 bp):
AACATTCAATATTTTAGTTTAATTAT
Done.