Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 583 of 770
Found at i:181995387 original size:40 final size:40
Alignment explanation
Indices: 181995321--181995487 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
181995311 AAATTGAATG
* * *
181995321 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
181995360 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
181995400 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
181995440 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
181995480 ATATCCGG
1 ATATCCGG
181995488 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:181999613 original size:40 final size:40
Alignment explanation
Indices: 181999528--181999678 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
181999518 AATTGAATGA
* * *
181999528 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
181999568 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
181999609 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
181999648 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
181999679 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:181999692 original size:40 final size:40
Alignment explanation
Indices: 181999565--181999694 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
181999555 ATGCTGGAAA
* * * *
181999565 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
181999605 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
181999645 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
181999685 TTATATCCGG
1 TTATATCCGG
181999695 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:182007631 original size:40 final size:40
Alignment explanation
Indices: 182007546--182007696 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
182007536 AATTGAATGA
* * *
182007546 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
182007586 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
182007627 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
182007666 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
182007697 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:182007710 original size:40 final size:40
Alignment explanation
Indices: 182007583--182007712 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
182007573 ATGCTGGAAA
* * * *
182007583 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
182007623 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
182007663 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
182007703 TTATATCCGG
1 TTATATCCGG
182007713 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:182015205 original size:29 final size:29
Alignment explanation
Indices: 182015177--182015278 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
182015167 CCTCCGAGCT
** * * *
182015177 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
182015206 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
182015235 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
182015264 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
182015279 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:182020037 original size:39 final size:39
Alignment explanation
Indices: 182019983--182020135 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
182019973 GAATGTTCGA
*
182019983 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
182020022 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
182020061 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
182020100 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
182020136 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:182020151 original size:40 final size:39
Alignment explanation
Indices: 182019984--182020165 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
182019974 AATGTTCGAG
* *
182019984 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
182020023 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
182020062 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
182020101 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
182020141 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
182020166 TGTTTTGAAC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:182028125 original size:39 final size:39
Alignment explanation
Indices: 182028071--182028223 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
182028061 GAATGTTCGA
*
182028071 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
182028110 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
182028149 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
182028188 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
182028224 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:182028239 original size:40 final size:39
Alignment explanation
Indices: 182028072--182028253 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
182028062 AATGTTCGAG
* *
182028072 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
182028111 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
182028150 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
182028189 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
182028229 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
182028254 TGTTTTGAAC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:182030759 original size:24 final size:24
Alignment explanation
Indices: 182030705--182030770 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
182030695 TAAAAACTAA
*
182030705 GTGGCACTATGTGTGCGAGACTAC
1 GTGGCACTATGTGTGCGAGACAAC
* *
182030729 ATAGCACTATGTGTGCGAGGA-AAC
1 GTGGCACTATGTGTGCGA-GACAAC
*
182030753 GTGGCACTTTGTGTGCGA
1 GTGGCACTATGTGTGCGA
182030771 ATAAGTAAGA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 33 0.94
25 2 0.06
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (24 bp):
GTGGCACTATGTGTGCGAGACAAC
Found at i:182032949 original size:9 final size:9
Alignment explanation
Indices: 182032937--182033013 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
182032927 TTTGATAAAC
182032937 ATGATATGT
1 ATGATATGT
*
182032946 ATGATATGCAC
1 ATGATATG--T
182032957 ATGATATGT
1 ATGATATGT
*
182032966 ATGATATGCAC
1 ATGATATG--T
*
182032977 ATGACATGT
1 ATGATATGT
*
182032986 ATGATATGCAC
1 ATGATATG--T
182032997 ATGATATGT
1 ATGATATGT
182033006 ATGATATG
1 ATGATATG
182033014 CACATGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:182032960 original size:20 final size:20
Alignment explanation
Indices: 182032935--182033025 Score: 164
Period size: 20 Copynumber: 4.5 Consensus size: 20
182032925 ATTTTGATAA
182032935 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
182032955 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
182032975 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
182032995 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
182033015 ACATGAGATGT
1 ACATGATATGT
182033026 TCATAAATGC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 68 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:182032962 original size:11 final size:11
Alignment explanation
Indices: 182032946--182033020 Score: 72
Period size: 11 Copynumber: 7.4 Consensus size: 11
182032936 CATGATATGT
182032946 ATGATATGCAC
1 ATGATATGCAC
*
182032957 ATGATATG--T
1 ATGATATGCAC
182032966 ATGATATGCAC
1 ATGATATGCAC
* *
182032977 ATGACATG--T
1 ATGATATGCAC
182032986 ATGATATGCAC
1 ATGATATGCAC
*
182032997 ATGATATG--T
1 ATGATATGCAC
182033006 ATGATATGCAC
1 ATGATATGCAC
182033017 ATGA
1 ATGA
182033021 GATGTTCATA
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
9 23 0.46
11 27 0.54
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:182033128 original size:23 final size:23
Alignment explanation
Indices: 182033072--182033284 Score: 318
Period size: 23 Copynumber: 9.1 Consensus size: 23
182033062 AGGAAGTGCA
*
182033072 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
* *
182033096 AAAGGTCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
182033119 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
182033142 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
182033166 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
182033189 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
182033212 AAAGGGCTTATGCCCCAGTGATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
* *
182033236 AAAGGGCTTACGCCTCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
182033259 AAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
182033282 AAA
1 AAA
182033285 AGAGGCAAGG
Statistics
Matches: 171, Mismatches: 16, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
23 110 0.64
24 61 0.36
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:182033186 original size:70 final size:70
Alignment explanation
Indices: 182033072--182033284 Score: 372
Period size: 70 Copynumber: 3.0 Consensus size: 70
182033062 AGGAAGTGCA
* *
182033072 AAAGGGCTTATGCCCCAGTTATCAAAAGGTCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAG
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG
182033137 TTATT
66 TTATT
182033142 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG
182033207 TTATT
66 TTATT
* * * *
182033212 AAAGGGCTTATGCCCCAGTGATCAAAAGGGCTTACGCCTCAGTTATTAAAGGGCTTTTGCCCCAG
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG
182033277 TTATT
66 TTATT
182033282 AAA
1 AAA
182033285 AGAGGCAAGG
Statistics
Matches: 137, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 137 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (70 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG
TTATT
Found at i:182033298 original size:47 final size:47
Alignment explanation
Indices: 182033072--182033286 Score: 326
Period size: 47 Copynumber: 4.6 Consensus size: 47
182033062 AGGAAGTGCA
* * *
182033072 AAAGGGCTTATGCCCCAGTTATCAAAAGGTCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
*
182033119 AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTAT-T
182033166 AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
* * * *
182033212 AAAGGGCTTATGCCCCAGTGATCAAAAGGGCTTACGCCTCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
*
182033259 AAAGGGCTTTTGCCCCAGTTATTAAAAG
1 AAAGGGCTTATGCCCCAGTTATTAAAAG
182033287 AGGCAAGGCC
Statistics
Matches: 154, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
46 41 0.27
47 113 0.73
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
Found at i:182033489 original size:42 final size:42
Alignment explanation
Indices: 182033434--182033515 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
182033424 CCAAATGGGT
**
182033434 TTGCATACATTCATTGGTATT-TCATGTGATATTGAAATGGCC
1 TTGCATACATTCATTGACATTAT-ATGTGATATTGAAATGGCC
* *
182033476 TTGCATTCTTTCATTGACATTATATGTGATATTGAAATGG
1 TTGCATACATTCATTGACATTATATGTGATATTGAAATGG
182033516 GCCTATGGGC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 34 0.97
43 1 0.03
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.43
Consensus pattern (42 bp):
TTGCATACATTCATTGACATTATATGTGATATTGAAATGGCC
Found at i:182038864 original size:40 final size:40
Alignment explanation
Indices: 182038819--182038986 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
182038809 CGGAATATAA
182038819 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
182038859 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
182038899 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
182038939 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
182038979 CCGGATAT
1 CCGGATAT
182038987 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:182046854 original size:40 final size:40
Alignment explanation
Indices: 182046809--182046976 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
182046799 CGGAATATAA
182046809 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
182046849 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
182046889 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
182046929 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
182046969 CCGGATAT
1 CCGGATAT
182046977 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:182050449 original size:40 final size:40
Alignment explanation
Indices: 182050404--182050569 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
182050394 CGGAATATAA
182050404 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
182050444 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
182050484 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
182050523 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
182050562 CCGGATAT
1 CCGGATAT
182050570 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:182050526 original size:39 final size:38
Alignment explanation
Indices: 182050420--182050531 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 38
182050410 ATAATCACGT
* * *
182050420 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATA-TACAACTA
* *
182050460 GCACGAATGCCTTCGGGCCTTAGCCCGGATATACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATACAACTA
*
182050499 GCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATA
182050532 ATTTCCAGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.03
39 32 0.51
40 29 0.46
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATACAACTA
Found at i:182050553 original size:79 final size:78
Alignment explanation
Indices: 182050420--182050569 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
182050410 ATAATCACGT
*
182050420 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
182050485 CGGATATACCACTA
65 CGGATATACCACTA
* * ** * *
182050499 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
182050562 CCGGATAT
64 CCGGATAT
182050570 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATACCACTA
Found at i:182051417 original size:17 final size:19
Alignment explanation
Indices: 182051394--182051439 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
182051384 AAGAAGCATG
182051394 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
182051412 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
182051430 AATCATGCTC
1 AATCATGCTC
182051440 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:182058445 original size:40 final size:40
Alignment explanation
Indices: 182058400--182058566 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
182058390 CGGAATATAA
182058400 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
182058440 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
182058480 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
182058520 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
182058559 CCGGATAT
1 CCGGATAT
182058567 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:182058550 original size:80 final size:79
Alignment explanation
Indices: 182058400--182058566 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
182058390 CGGAATATAA
* *
182058400 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
182058465 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
182058480 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
182058542 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
182058559 CCGGATAT
1 CCGGATAT
182058567 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:182059415 original size:17 final size:19
Alignment explanation
Indices: 182059392--182059437 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
182059382 AAGAAGCATG
182059392 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
182059410 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
182059428 AATCATGCTC
1 AATCATGCTC
182059438 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:182061332 original size:10 final size:10
Alignment explanation
Indices: 182061320--182061364 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
182061310 TATAACTTTT
*
182061320 TAAAAAATTT
1 TAAAAAATTA
182061330 TAAAAAAATTA
1 T-AAAAAATTA
*
182061341 TAAAAAAGTA
1 TAAAAAATTA
*
182061351 TAAAAAAGTA
1 TAAAAAATTA
182061361 TAAA
1 TAAA
182061365 CTTTAGAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
10 23 0.72
11 9 0.28
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:182061490 original size:24 final size:23
Alignment explanation
Indices: 182061448--182061492 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
182061438 AAAAGATAAA
* *
182061448 AATATTAGACATAATTTTTTTCC
1 AATATTAGAAATAACTTTTTTCC
182061471 AATATTAAGAAATAACTTTTTT
1 AATATT-AGAAATAACTTTTTT
182061493 TAAAATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.47
Consensus pattern (23 bp):
AATATTAGAAATAACTTTTTTCC
Found at i:182062227 original size:18 final size:17
Alignment explanation
Indices: 182062189--182062227 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
182062179 TAAAATTAAT
182062189 AAAAAATTGAAAGAAAG
1 AAAAAATTGAAAGAAAG
*
182062206 AAAAAATTGAAAGTAAG
1 AAAAAATTGAAAGAAAG
182062223 AAAAA
1 AAAAA
182062228 GGGAAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.15, T:0.13
Consensus pattern (17 bp):
AAAAAATTGAAAGAAAG
Found at i:182066070 original size:14 final size:14
Alignment explanation
Indices: 182066051--182066080 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
182066041 TCCATGAACA
182066051 TATGTATATTAGTT
1 TATGTATATTAGTT
*
182066065 TATGTATATTTGTT
1 TATGTATATTAGTT
182066079 TA
1 TA
182066081 ATTATTGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60
Consensus pattern (14 bp):
TATGTATATTAGTT
Found at i:182066682 original size:13 final size:13
Alignment explanation
Indices: 182066666--182066691 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
182066656 ATATGTTTCA
182066666 TGATTGTTTTGGT
1 TGATTGTTTTGGT
182066679 TGATTGTTTTGGT
1 TGATTGTTTTGGT
182066692 ATGGATTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.62
Consensus pattern (13 bp):
TGATTGTTTTGGT
Found at i:182076599 original size:28 final size:27
Alignment explanation
Indices: 182076536--182076605 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
182076526 ATAGTGAGTC
182076536 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
182076563 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
182076591 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
182076606 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:182084418 original size:28 final size:27
Alignment explanation
Indices: 182084355--182084424 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
182084345 ATAGTGAGTC
182084355 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
182084382 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
182084410 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
182084425 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:182090552 original size:40 final size:40
Alignment explanation
Indices: 182090465--182090676 Score: 212
Period size: 40 Copynumber: 5.3 Consensus size: 40
182090455 CCTTCGGAAT
* * *
182090465 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
182090504 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* ** *
182090544 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * *
182090584 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
182090624 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
*
182090664 TTAGCCCGGATAT
1 TTAACCCGGATAT
182090677 CATTCCAATG
Statistics
Matches: 144, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
38 2 0.01
40 140 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
Found at i:182090590 original size:80 final size:80
Alignment explanation
Indices: 182090465--182090676 Score: 248
Period size: 80 Copynumber: 2.7 Consensus size: 80
182090455 CCTTCGGAAT
* * * ** * ***
182090465 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
182090529 -AATTGCCTTCGGGTC
66 GAA-TGCCTTCGGGTC
* ** * *
182090544 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
182090609 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * *
182090624 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
182090677 CATTCCAATG
Statistics
Matches: 110, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 4 0.04
80 104 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
GAATGCCTTCGGGTC
Found at i:182098500 original size:39 final size:40
Alignment explanation
Indices: 182098436--182098638 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
182098426 CGGAATTTAA
* * * **
182098436 CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGC
1 CCGGATATAATAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * *
182098476 CCGGTTATAGTGACTCGCAC-AATGCCTTCGGGTCTTAAC
1 CCGGATATAATAACTCGCACAAATGCCTTCGGGTCTTAGC
** *
182098515 CCGGAT-TTGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTCGCACAAATGCCTTCGGGTCTTAGC
*
182098554 CCGG--AT-ATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * *
182098591 CCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAATAACTCGCACAAATGCCTTCGGGTCTTAGC
182098631 CCGGATAT
1 CCGGATAT
182098639 CATTCCAATG
Statistics
Matches: 138, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
37 32 0.23
38 11 0.08
39 44 0.32
40 51 0.37
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:182098576 original size:37 final size:36
Alignment explanation
Indices: 182098488--182098638 Score: 185
Period size: 37 Copynumber: 4.0 Consensus size: 36
182098478 GGTTATAGTG
* *
182098488 ACTCGCACAATGCCTTCGGGTCTTAACCCGGATTTGTA
1 ACTCGCACAATGCCTTCGGGTCTTAGCCCGGA--TATA
*
182098526 ACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 ACTCGCAC-AATGCCTTCGGGTCTTAGCCCGGATATA
182098563 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAA
1 ACTCGCAC-AATGCCTTCGGGTCTTAGCCCGGATAT-A
* *
182098601 TTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 --ACTCGCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
182098639 CATTCCAATG
Statistics
Matches: 101, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
37 37 0.37
38 8 0.08
39 25 0.25
40 31 0.31
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (36 bp):
ACTCGCACAATGCCTTCGGGTCTTAGCCCGGATATA
Found at i:182106517 original size:40 final size:40
Alignment explanation
Indices: 182106430--182106641 Score: 212
Period size: 40 Copynumber: 5.3 Consensus size: 40
182106420 CCTTCGGAAT
* * *
182106430 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
182106469 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* ** *
182106509 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * *
182106549 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
182106589 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
*
182106629 TTAGCCCGGATAT
1 TTAACCCGGATAT
182106642 CATTCCAATG
Statistics
Matches: 144, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
38 2 0.01
40 140 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
Found at i:182106555 original size:80 final size:80
Alignment explanation
Indices: 182106430--182106641 Score: 248
Period size: 80 Copynumber: 2.7 Consensus size: 80
182106420 CCTTCGGAAT
* * * ** * ***
182106430 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
182106494 -AATTGCCTTCGGGTC
66 GAA-TGCCTTCGGGTC
* ** * *
182106509 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
182106574 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * *
182106589 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
182106642 CATTCCAATG
Statistics
Matches: 110, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 4 0.04
80 104 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
GAATGCCTTCGGGTC
Found at i:182114540 original size:40 final size:40
Alignment explanation
Indices: 182114453--182114664 Score: 212
Period size: 40 Copynumber: 5.3 Consensus size: 40
182114443 CCTTCGGAAT
* * *
182114453 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
182114492 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* ** *
182114532 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * *
182114572 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
182114612 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
*
182114652 TTAGCCCGGATAT
1 TTAACCCGGATAT
182114665 CATTCCAATG
Statistics
Matches: 144, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
38 2 0.01
40 140 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
Found at i:182114578 original size:80 final size:80
Alignment explanation
Indices: 182114453--182114664 Score: 248
Period size: 80 Copynumber: 2.7 Consensus size: 80
182114443 CCTTCGGAAT
* * * ** * ***
182114453 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
182114517 -AATTGCCTTCGGGTC
66 GAA-TGCCTTCGGGTC
* ** * *
182114532 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
182114597 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * *
182114612 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
182114665 CATTCCAATG
Statistics
Matches: 110, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 4 0.04
80 104 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
GAATGCCTTCGGGTC
Found at i:182122558 original size:40 final size:40
Alignment explanation
Indices: 182122471--182122682 Score: 212
Period size: 40 Copynumber: 5.3 Consensus size: 40
182122461 CCTTCGGAAT
* * *
182122471 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
182122510 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* ** *
182122550 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * *
182122590 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
182122630 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
*
182122670 TTAGCCCGGATAT
1 TTAACCCGGATAT
182122683 CATTCCAATG
Statistics
Matches: 144, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
38 2 0.01
40 140 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
Found at i:182122596 original size:80 final size:80
Alignment explanation
Indices: 182122471--182122682 Score: 248
Period size: 80 Copynumber: 2.7 Consensus size: 80
182122461 CCTTCGGAAT
* * * ** * ***
182122471 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
182122535 -AATTGCCTTCGGGTC
66 GAA-TGCCTTCGGGTC
* ** * *
182122550 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
182122615 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * *
182122630 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
182122683 CATTCCAATG
Statistics
Matches: 110, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 4 0.04
80 104 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
GAATGCCTTCGGGTC
Found at i:182127075 original size:40 final size:40
Alignment explanation
Indices: 182127016--182127258 Score: 241
Period size: 40 Copynumber: 6.2 Consensus size: 40
182127006 CATTGGAATG
* *
182127016 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
182127056 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT--TGT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAAT-T
182127095 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAG---TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * * **
182127132 ATATCCGGGCTAAGA-CCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
* * * *
182127171 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
* ** * * * *
182127211 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
182127251 ATATCCGG
1 ATATCCGG
182127259 TTAAATTCCG
Statistics
Matches: 174, Mismatches: 22, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
36 14 0.08
37 18 0.10
38 2 0.01
39 52 0.30
40 88 0.51
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:182127177 original size:76 final size:76
Alignment explanation
Indices: 182127018--182127206 Score: 247
Period size: 76 Copynumber: 2.4 Consensus size: 76
182127008 TTGGAATGAT
* *
182127018 ATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC--G-AGTTATATCCGGGCTAAGACCCGAAGGCATT
* ** *
182127083 CGTGCGAGTTGTAT
63 CGTGCAAGTTCCAA
*
182127097 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATATCCGGGCTAAGA-CCGAAGGCATTTG
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTATATCCGGGCTAAGACCCGAAGGCATTCG
182127160 TGCAAGTTACCAA
65 TGCAAGTT-CCAA
*
182127173 ATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT
182127207 CACTATAACC
Statistics
Matches: 99, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
75 19 0.19
76 48 0.48
77 4 0.04
78 3 0.03
79 25 0.25
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (76 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTATATCCGGGCTAAGACCCGAAGGCATTCGT
GCAAGTTCCAA
Found at i:182134845 original size:40 final size:40
Alignment explanation
Indices: 182134786--182134993 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
182134776 CATTGGAATG
* * *
182134786 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* **
182134826 ATATCCGGGCTAAGACCCGAAGGC-ATTCGGGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * * * **
182134866 ATATCCAGGCTAAGACCCAAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
182134906 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* **** * *
182134946 ATAACCGGGCTTCTTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
182134986 ATATCCGG
1 ATATCCGG
182134994 TTAAATTCCG
Statistics
Matches: 134, Mismatches: 32, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
39 3 0.02
40 129 0.96
41 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:182137516 original size:2 final size:2
Alignment explanation
Indices: 182137498--182137553 Score: 94
Period size: 2 Copynumber: 28.0 Consensus size: 2
182137488 TATTGGCCTA
* *
182137498 AT AT AT GT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
182137540 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
182137554 GAATACACAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (2 bp):
AT
Found at i:182137972 original size:38 final size:38
Alignment explanation
Indices: 182137913--182138031 Score: 159
Period size: 38 Copynumber: 3.1 Consensus size: 38
182137903 TTTAGGCCCG
*
182137913 GATATAGTACCAGCACT-AAGCCTGCGGGATTTAACCCA
1 GATATATTACCAGCA-TGAAGCCTGCGGGATTTAACCCA
* * *
182137951 GATATATTACTAGCATGAAGCCTACAGGATTTAACCCA
1 GATATATTACCAGCATGAAGCCTGCGGGATTTAACCCA
* * *
182137989 GATATATTACCAGCACGAAGCCTGCGGGACTTAACCCG
1 GATATATTACCAGCATGAAGCCTGCGGGATTTAACCCA
182138027 GATAT
1 GATAT
182138032 GTATCGAGTG
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
37 1 0.01
38 69 0.99
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (38 bp):
GATATATTACCAGCATGAAGCCTGCGGGATTTAACCCA
Found at i:182142901 original size:29 final size:28
Alignment explanation
Indices: 182142831--182142905 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
182142821 ATACTCGATT
* *
182142831 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
182142859 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
182142888 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
182142906 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:182142922 original size:29 final size:29
Alignment explanation
Indices: 182142889--182142962 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
182142879 CCTTCGAGCT
182142889 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
182142918 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
182142947 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
182142963 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:182150777 original size:29 final size:28
Alignment explanation
Indices: 182150707--182150781 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
182150697 ATACTCGATT
* *
182150707 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
182150735 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
182150764 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
182150782 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:182150798 original size:29 final size:29
Alignment explanation
Indices: 182150765--182150838 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
182150755 CCTTCGAGCT
182150765 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
182150794 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
182150823 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
182150839 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:182153955 original size:28 final size:28
Alignment explanation
Indices: 182153923--182153991 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
182153913 GCGTAGATCA
182153923 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
182153951 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
182153979 CGATA-TACCCCTA
1 CGAAATTACCCCTA
182153992 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:182157698 original size:28 final size:28
Alignment explanation
Indices: 182157666--182157734 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
182157656 GCGTAGATCA
182157666 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
182157694 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
182157722 CGATA-TACCCCTA
1 CGAAATTACCCCTA
182157735 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:182161438 original size:28 final size:28
Alignment explanation
Indices: 182161406--182161474 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
182161396 GCGTAGATCA
182161406 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
182161434 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
182161462 CGATA-TACCCCTA
1 CGAAATTACCCCTA
182161475 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:182170453 original size:40 final size:40
Alignment explanation
Indices: 182170385--182170562 Score: 175
Period size: 40 Copynumber: 4.5 Consensus size: 40
182170375 CCAAGGCCAA
* * * *
182170385 CGGGACTTA-CCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* *
182170424 CGGGTCTTAGCCCGGATTTAACAACTTGCACGAATGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* * * *
182170464 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* * *
182170504 CGGGTCTTAACCCGGATAT-A-AA-TTTCAGCATAATTGTCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCA-CA-AA-TGCCTT
*
182170544 CGGGGCTTAGCCCGGATAT
1 CGGGTCTTAGCCCGGATAT
182170563 CATTCAATTT
Statistics
Matches: 114, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 9 0.08
40 99 0.87
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
Found at i:182173272 original size:31 final size:30
Alignment explanation
Indices: 182173227--182173341 Score: 112
Period size: 31 Copynumber: 3.8 Consensus size: 30
182173217 TTTCTAAAAA
182173227 TAATATTATTTTAATTTAATATTTATCTAG
1 TAATATTATTTTAATTTAATATTTATCTAG
* *
182173257 CTAATATT-TTATTAATTTAATA-TCA-ATAG
1 -TAATATTATT-TTAATTTAATATTTATCTAG
* *
182173286 GAGATATTAATTTTAATTTAATATTTATCTTG
1 TA-ATATT-ATTTTAATTTAATATTTATCTAG
182173318 ATAATATT-TTATTAATTTAATATT
1 -TAATATTATT-TTAATTTAATATT
182173342 AATGTGATTA
Statistics
Matches: 69, Mismatches: 7, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
28 1 0.01
29 8 0.12
30 17 0.25
31 35 0.51
32 7 0.10
33 1 0.01
ACGTcount: A:0.38, C:0.03, G:0.04, T:0.54
Consensus pattern (30 bp):
TAATATTATTTTAATTTAATATTTATCTAG
Found at i:182176150 original size:35 final size:34
Alignment explanation
Indices: 182176065--182176189 Score: 99
Period size: 34 Copynumber: 3.6 Consensus size: 34
182176055 GTACATCGAC
* * *
182176065 AATCCAACCAAAATACACCAGATGCTCATAAGAGCC
1 AATCCAACC-GAACACACCA-ATGCTCATAAGAGCT
* *
182176101 AATCCAACTGAACACACCAATGCTCGTAAGAGCT
1 AATCCAACCGAACACACCAATGCTCATAAGAGCT
** * *
182176135 AATCCCTCCGAA-ACACACAGTGCTCATAAGAGAT
1 AATCCAACCGAACACAC-CAATGCTCATAAGAGCT
** *
182176169 AATTAAACCTAAACACACCAA
1 AATCCAACC-GAACACACCAA
182176190 GACAAAGAGT
Statistics
Matches: 69, Mismatches: 17, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
33 4 0.06
34 41 0.59
35 12 0.17
36 12 0.17
ACGTcount: A:0.43, C:0.30, G:0.11, T:0.16
Consensus pattern (34 bp):
AATCCAACCGAACACACCAATGCTCATAAGAGCT
Found at i:182181644 original size:27 final size:27
Alignment explanation
Indices: 182181606--182181660 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
182181596 ATCAACATGA
182181606 TAATAACAATTCAAAATAATTCTTTCT
1 TAATAACAATTCAAAATAATTCTTTCT
182181633 TAATAACAATTCAAAATAATTCTTTCT
1 TAATAACAATTCAAAATAATTCTTTCT
182181660 T
1 T
182181661 CTTGTTGTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.42
Consensus pattern (27 bp):
TAATAACAATTCAAAATAATTCTTTCT
Found at i:182184603 original size:27 final size:28
Alignment explanation
Indices: 182184546--182184614 Score: 99
Period size: 27 Copynumber: 2.5 Consensus size: 28
182184536 AATGAGATTG
182184546 GCACTAAGTGTGCGAGTTTAATTGTATA
1 GCACTAAGTGTGCGAGTTTAATTGTATA
182184574 GCACTAAGTGTGCGAG-TTAACTAT-TA-A
1 GCACTAAGTGTGCGAGTTTAA-T-TGTATA
182184601 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
182184615 GACTTACTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
27 19 0.49
28 19 0.49
29 1 0.03
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTGTATA
Found at i:182184623 original size:27 final size:27
Alignment explanation
Indices: 182184546--182184624 Score: 83
Period size: 27 Copynumber: 2.9 Consensus size: 27
182184536 AATGAGATTG
*
182184546 GCACTAAGTGTGCGAGTTTAA-T-TGTATA
1 GCACTAAGTGTGCGA-CTTAACTAT-TA-A
*
182184574 GCACTAAGTGTGCGAGTTAACTATTAA
1 GCACTAAGTGTGCGACTTAACTATTAA
182184601 GCACTAAGTGTGCGGACTT-ACTAT
1 GCACTAAGTGTGC-GACTTAACTAT
182184625 ATATTTTCGA
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
27 23 0.50
28 22 0.48
29 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAACTATTAA
Found at i:182187960 original size:25 final size:25
Alignment explanation
Indices: 182187932--182188000 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
182187922 TTGTGAATTG
*
182187932 GTATGCTCATTCGAGCTGTAGATCA
1 GTATGCTCATTCGAGCTGTAAATCA
*
182187957 GTATGCTC--TCAGCAGCTATAAATCA
1 GTATGCTCATTC-G-AGCTGTAAATCA
* *
182187982 GCATGCTCATACGAGCTGT
1 GTATGCTCATTCGAGCTGT
182188001 GGGTCGAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
23 2 0.06
24 1 0.03
25 30 0.86
26 1 0.03
27 1 0.03
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (25 bp):
GTATGCTCATTCGAGCTGTAAATCA
Found at i:182195875 original size:40 final size:40
Alignment explanation
Indices: 182195769--182195952 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
182195759 TGCTGGAAAT
* * * * * **
182195769 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
182195809 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
182195849 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
182195887 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
182195928 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
182195953 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:182195893 original size:79 final size:80
Alignment explanation
Indices: 182195774--182195957 Score: 185
Period size: 79 Copynumber: 2.3 Consensus size: 80
182195764 GAAATTATAA
* * * * *
182195774 CCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGCTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCG
*
182195839 TGCGAGTCATTC-TAT
66 TGCGAGTCA-CCATAT
* * * * *
182195854 CCGGGCTAAGACCCGAAGGCATTTGTGC-AATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCT-ATATCCGGGCTAAGACCCGAAGGCATTC
* *
182195917 GTGCGGGTTACCATAT
65 GTGCGAGTCACCATAT
* * *
182195933 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGACCCGAAGGCATTTG
182195958 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
78 2 0.02
79 59 0.69
80 25 0.29
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCACCATAT
Found at i:182207962 original size:40 final size:40
Alignment explanation
Indices: 182207867--182208044 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
182207857 CGAATGGTGT
* * * *
182207867 CCGGGCTAAGT-CCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
182207907 CCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
182207947 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
182207987 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
182208027 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
182208045 ACAATCGAGC
Statistics
Matches: 113, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
39 1 0.01
40 96 0.85
41 16 0.14
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:182208001 original size:80 final size:80
Alignment explanation
Indices: 182207867--182208058 Score: 208
Period size: 80 Copynumber: 2.4 Consensus size: 80
182207857 CGAATGGTGT
* * * *
182207867 CCGGGCTAAGT-CCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
* *
182207931 GTGCGAGTTACCAAAA
65 GTGCGAATCACCAAAA
* * * *
182207947 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAATT
* *
182208011 GTGCGAATCACTATAA
65 GTGCGAATCACCAAAA
* * * *
182208027 CCGGGCTATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
182208059 CGCTATATCC
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
79 1 0.01
80 78 0.84
81 14 0.15
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATTG
TGCGAATCACCAAAA
Found at i:182208065 original size:40 final size:40
Alignment explanation
Indices: 182207987--182208070 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
182207977 GTTATTAAAT
* * *
182207987 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
182208027 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
182208067 CCGG
1 CCGG
182208071 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:182222247 original size:47 final size:47
Alignment explanation
Indices: 182222194--182222288 Score: 138
Period size: 47 Copynumber: 2.0 Consensus size: 47
182222184 CTAATGTACT
182222194 TTTACCCAAAGGACCTTTTACCAGTACGT-TCGTCTCAAAATACTCTA
1 TTTACCCAAAGGACCTTTTACCAGTACGTCT-GTCTCAAAATACTCTA
** * *
182222241 TTTACCCAAAGGATTTTTTACTAGTACGTCTGTCTCAGAATACTCTA
1 TTTACCCAAAGGACCTTTTACCAGTACGTCTGTCTCAAAATACTCTA
182222288 T
1 T
182222289 CTCAAGACTA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
47 42 0.98
48 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (47 bp):
TTTACCCAAAGGACCTTTTACCAGTACGTCTGTCTCAAAATACTCTA
Found at i:182230230 original size:29 final size:29
Alignment explanation
Indices: 182230168--182230270 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
182230158 GTGACGAGAT
* * *
182230168 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
182230197 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
182230226 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
182230255 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
182230271 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:182238205 original size:29 final size:29
Alignment explanation
Indices: 182238143--182238245 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
182238133 GTGACGAGAT
* * *
182238143 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
182238172 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
182238201 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
182238230 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
182238246 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:182246720 original size:116 final size:116
Alignment explanation
Indices: 182246516--182246724 Score: 339
Period size: 116 Copynumber: 1.8 Consensus size: 116
182246506 GAATTATGTG
* * * *
182246516 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAACATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATGATACCCGG
*
182246581 GCTAAGTCCCGAAGGCGATTATGCTAGTGATATTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGTGATATTTTGAGCCTTAGTAACGA
* *
182246632 AAATGAAACATGGATGTGTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAACATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATGATACCCGG
182246697 GCTAAGTCCCGAAGAC-ATTTATGCTAGT
66 GCTAAGTCCCGAAGACGA-TTATGCTAGT
182246725 AATTATATCC
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
115 1 0.01
116 84 0.99
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.33
Consensus pattern (116 bp):
AAATGAAACATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGTGATATTTTGAGCCTTAGTAACGA
Found at i:182246748 original size:40 final size:40
Alignment explanation
Indices: 182246689--182246896 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
182246679 CAATTGAATG
* * * *
182246689 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
182246729 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
182246769 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
182246809 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
182246849 GTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
182246889 ATATCCGG
1 ATATCCGG
182246897 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:182246827 original size:80 final size:80
Alignment explanation
Indices: 182246691--182246896 Score: 243
Period size: 80 Copynumber: 2.6 Consensus size: 80
182246681 ATTGAATGAT
* * ** * * *
182246691 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
182246756 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
182246771 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* **
182246836 TGTGCAAGTCGTTGT
66 TGTGCAAGTCGCTAC
* *
182246851 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
182246897 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 106 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:182250716 original size:37 final size:37
Alignment explanation
Indices: 182250663--182250771 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
182250653 AGCTCAGACG
* *
182250663 AAATCTCCACATGTAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
182250700 AAATCTCCACACGTAGTCATCGAGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
182250737 TAATCTCTACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
182250772 ATATATTTCC
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:182250976 original size:50 final size:50
Alignment explanation
Indices: 182250922--182251018 Score: 151
Period size: 50 Copynumber: 1.9 Consensus size: 50
182250912 ATCGCCTACG
182250922 TATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCATATATA
1 TATTTCACA-TAGACCATTCGGCTTTACCACATATACATATCTCATATATA
* * *
182250972 TATTTCACATTGACCATTCGGCTTTACCACGTATGCATATCTCATAT
1 TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATAT
182251019 TCATCACATT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
49 2 0.05
50 41 0.95
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.37
Consensus pattern (50 bp):
TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATATATA
Found at i:182251239 original size:47 final size:47
Alignment explanation
Indices: 182250976--182251262 Score: 418
Period size: 47 Copynumber: 6.1 Consensus size: 47
182250966 TATATATATT
* * * * *
182250976 TCACATTGACCATTCGGCTTTA-C-CACGTATGCATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGT-TCACATTCA
*
182251022 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
182251069 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
182251116 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
182251163 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* * **
182251210 TCACATTGGCCATTCGGCCTTATCTCATATA-GACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATG-CATGTTCACATTCA
182251257 TCACAT
1 TCACAT
182251263 AAAATCCTAA
Statistics
Matches: 223, Mismatches: 15, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
46 21 0.09
47 192 0.86
48 10 0.04
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
Found at i:182255679 original size:40 final size:39
Alignment explanation
Indices: 182255515--182255697 Score: 129
Period size: 40 Copynumber: 4.6 Consensus size: 39
182255505 AAATTGAATG
* * *
182255515 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
182255555 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
182255595 ACATCCGGGCT-AGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
182255634 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
182255673 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
182255698 CTTGGTGCGG
Statistics
Matches: 111, Mismatches: 26, Indels: 12
0.74 0.17 0.08
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 34 0.31
40 71 0.64
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:182271046 original size:40 final size:40
Alignment explanation
Indices: 182271001--182271130 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
182270991 CGGAATACAA
182271001 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
182271041 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
182271081 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
182271121 CCGGATATAA
1 CCGGATATAA
182271131 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:182279755 original size:48 final size:48
Alignment explanation
Indices: 182279671--182279954 Score: 256
Period size: 48 Copynumber: 5.9 Consensus size: 48
182279661 ACTGAGGAGT
* * ** * *
182279671 CTCGCACACTAAGTGCCAATATCATGGCCTAAAGCCAACTCAATATAT
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATATAA
* * * *
182279719 CTTGCACCCGAAGTGCTAATATCATGGCCCGTAGCCAAATC--TGTGAA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATAT-AA
**
182279766 GCTCGCACCC-AAGGTGCCAATATCATGGCTTGAAGCCAAATCAA-AGTAA
1 -CTCGCACCCGAA-GTGCCAATATCATGGCCCGAAGCCAAATCAATA-TAA
* * * * * *
182279815 CTCGAACTCGAAATGCTAATATCATGGCCCGTAGCCAAATCAATGA-AG
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAT-ATAA
* *
182279863 CTCGCACTCGAAGTGCCAATATCATGGCCCAAAGCCAAATCAA-AGTAA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATA-TAA
* * * *
182279911 CTCGCACCCGAAGTACTAATATCATGGCCCGTAGCCATATCAAT
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAT
182279955 GTATCCCCTA
Statistics
Matches: 188, Mismatches: 36, Indels: 23
0.76 0.15 0.09
Matches are distributed among these distances:
46 3 0.02
47 3 0.02
48 176 0.94
49 4 0.02
50 2 0.01
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.21
Consensus pattern (48 bp):
CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATATAA
Found at i:182279835 original size:96 final size:96
Alignment explanation
Indices: 182279671--182279955 Score: 394
Period size: 96 Copynumber: 3.0 Consensus size: 96
182279661 ACTGAGGAGT
* * * * *
182279671 CTCGCACACTAAGTGCCAATATCATGGCCTAAAGCCAACTCAATA-TATCTTGCACCCGAAGTGC
1 CTCGCACTCCAAGTGCCAATATCATGGCCTAAAGCCAAATCAA-AGTAACTCGCACCCGAAGTGC
**
182279735 TAATATCATGGCCCGTAGCCAAATCTGTGAAG
65 TAATATCATGGCCCGTAGCCAAATCAATGAAG
* * * * *
182279767 CTCGCAC-CCAAGGTGCCAATATCATGGCTTGAAGCCAAATCAAAGTAACTCGAACTCGAAATGC
1 CTCGCACTCCAA-GTGCCAATATCATGGCCTAAAGCCAAATCAAAGTAACTCGCACCCGAAGTGC
182279831 TAATATCATGGCCCGTAGCCAAATCAATGAAG
65 TAATATCATGGCCCGTAGCCAAATCAATGAAG
* * *
182279863 CTCGCACTCGAAGTGCCAATATCATGGCCCAAAGCCAAATCAAAGTAACTCGCACCCGAAGTACT
1 CTCGCACTCCAAGTGCCAATATCATGGCCTAAAGCCAAATCAAAGTAACTCGCACCCGAAGTGCT
*
182279928 AATATCATGGCCCGTAGCCATATCAATG
66 AATATCATGGCCCGTAGCCAAATCAATG
182279956 TATCCCCTAA
Statistics
Matches: 166, Mismatches: 20, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
95 4 0.02
96 159 0.96
97 3 0.02
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.21
Consensus pattern (96 bp):
CTCGCACTCCAAGTGCCAATATCATGGCCTAAAGCCAAATCAAAGTAACTCGCACCCGAAGTGCT
AATATCATGGCCCGTAGCCAAATCAATGAAG
Found at i:182284121 original size:22 final size:23
Alignment explanation
Indices: 182284069--182284111 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
182284059 GAAATCTTAT
*
182284069 ATATGA-TATGTAATCTTAGAAG
1 ATATGATTTTGTAATCTTAGAAG
182284091 ATATGATTTTGTAATCTTAGA
1 ATATGATTTTGTAATCTTAGA
182284112 GATTTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (23 bp):
ATATGATTTTGTAATCTTAGAAG
Found at i:182289967 original size:20 final size:21
Alignment explanation
Indices: 182289944--182289984 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
182289934 ATCACTTTAA
* *
182289944 TATTAA-ATTAATGTAATATT
1 TATTAAGATAAATATAATATT
182289964 TATTAAGATAAATATAATATT
1 TATTAAGATAAATATAATATT
182289985 AAATATAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (21 bp):
TATTAAGATAAATATAATATT
Found at i:182289989 original size:12 final size:12
Alignment explanation
Indices: 182289972--182289996 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
182289962 TTTATTAAGA
182289972 TAAATATAATAT
1 TAAATATAATAT
182289984 TAAATATAATAT
1 TAAATATAATAT
182289996 T
1 T
182289997 GAATCTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAAATATAATAT
Found at i:182290086 original size:20 final size:18
Alignment explanation
Indices: 182290034--182290147 Score: 76
Period size: 17 Copynumber: 6.2 Consensus size: 18
182290024 ATCTACAAGA
182290034 TAAATATTAAATTAA-AT
1 TAAATATTAAATTAATAT
182290051 TAAATATTAAGA-TAATCACT
1 TAAATATTAA-ATTAAT-A-T
*
182290071 TTAATATTAAATTAATA-
1 TAAATATTAAATTAATAT
* * *
182290088 AAATACTATTAAAATATGTAT
1 TAA-A-TATTAAATTA-ATAT
182290109 T-AA-ATTAAATTTAATAT
1 TAAATATTAAA-TTAATAT
*
182290126 TAAACTATTAAAATAATAT
1 TAAA-TATTAAATTAATAT
182290145 TAA
1 TAA
182290148 TTTTAGAATA
Statistics
Matches: 75, Mismatches: 9, Indels: 24
0.69 0.08 0.22
Matches are distributed among these distances:
17 24 0.32
18 6 0.08
19 22 0.29
20 23 0.31
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (18 bp):
TAAATATTAAATTAATAT
Found at i:182298681 original size:40 final size:40
Alignment explanation
Indices: 182298615--182298781 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
182298605 AAATTGAATG
* * *
182298615 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
182298654 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
182298694 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
182298734 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
182298774 ATATCCGG
1 ATATCCGG
182298782 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:182306787 original size:39 final size:40
Alignment explanation
Indices: 182306609--182306791 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
182306599 CCGCACCAAG
* * * * * * * *
182306609 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
182306649 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
182306689 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
182306729 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
182306768 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
182306792 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:182314892 original size:39 final size:40
Alignment explanation
Indices: 182314714--182314896 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
182314704 CCGCACCAAG
* * * * * * * *
182314714 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
182314754 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
182314794 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
182314834 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
182314873 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
182314897 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:182324552 original size:38 final size:35
Alignment explanation
Indices: 182324493--182324610 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
182324483 TCAATCATGC
*
182324493 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
182324532 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
182324563 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
182324594 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
182324611 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:182324554 original size:31 final size:31
Alignment explanation
Indices: 182324516--182324610 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
182324506 CCTTTTCATA
*
182324516 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
182324547 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
182324578 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
182324609 TT
1 TT
182324611 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:182324881 original size:23 final size:24
Alignment explanation
Indices: 182324802--182324943 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
182324792 GCTTTATCAT
* *
182324802 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
182324827 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
182324851 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
182324874 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
182324898 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
182324921 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
182324944 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 46 0.42
24 51 0.47
25 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:182324943 original size:47 final size:47
Alignment explanation
Indices: 182324802--182324943 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
182324792 GCTTTATCAT
* * *
182324802 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTTTA
*
182324851 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
182324898 ATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTT
182324944 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
46 16 0.18
47 50 0.57
48 9 0.10
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
Found at i:182325019 original size:20 final size:20
Alignment explanation
Indices: 182324994--182325071 Score: 133
Period size: 20 Copynumber: 4.0 Consensus size: 20
182324984 TATGATTACC
182324994 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
182325014 TCATGTGCATATCATAC--A
1 TCATGTGCATATCATACATA
*
182325032 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
182325052 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
182325072 CCATATTTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
18 18 0.33
20 36 0.67
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:182325036 original size:38 final size:38
Alignment explanation
Indices: 182324994--182325070 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
182324984 TATGATTACC
182324994 TCATGTGCATATCATACATATCATGTGCATATCATACA
1 TCATGTGCATATCATACATATCATGTGCATATCATACA
*
182325032 TCATGTGCATATCATACATTTCATGTGCATATCATACA
1 TCATGTGCATATCATACATATCATGTGCATATCATACA
182325070 T
1 T
182325071 ACCATATTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.36
Consensus pattern (38 bp):
TCATGTGCATATCATACATATCATGTGCATATCATACA
Found at i:182325146 original size:25 final size:25
Alignment explanation
Indices: 182325114--182325161 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
182325104 ATACATAAAC
* * *
182325114 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
182325139 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
182325162 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:182332723 original size:30 final size:31
Alignment explanation
Indices: 182332674--182332767 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
182332664 CCTTTTCATA
*
182332674 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
182332705 TTTCATA-TTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
182332735 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
182332766 TT
1 TT
182332768 ACTGTAAACG
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
30 29 0.48
31 32 0.52
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:182333010 original size:24 final size:23
Alignment explanation
Indices: 182332980--182333100 Score: 188
Period size: 24 Copynumber: 5.1 Consensus size: 23
182332970 CCTAGCCTCT
*
182332980 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
182333003 TTTCAATAACTGGGGCATAAGCCC
1 TTT-AATAACTGGGGCATAAGCCC
*
182333027 TTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
182333050 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
182333074 TTTAGATAACTGGGGCATAAGCCC
1 TTTA-ATAACTGGGGCATAAGCCC
182333098 TTT
1 TTT
182333101 TTCACTTCCT
Statistics
Matches: 91, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
23 25 0.27
24 66 0.73
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:182333038 original size:47 final size:47
Alignment explanation
Indices: 182332959--182333100 Score: 196
Period size: 47 Copynumber: 3.0 Consensus size: 47
182332949 GCTTTATCAT
* *
182332959 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTTCA
**
182333008 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTCA
*
182333055 ATAACTGGGGCATAAGCCCTTTAGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT-TATAACTGGGGCATAAGCCCTTT
182333101 TTCACTTCCT
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
47 43 0.50
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTCA
Found at i:182333059 original size:71 final size:72
Alignment explanation
Indices: 182332958--182333101 Score: 222
Period size: 71 Copynumber: 2.0 Consensus size: 72
182332948 TGCTTTATCA
*
182332958 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA-ATAACTGGGGCATA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTT-AGATAACTGGGGCATA
182333022 AGCCCTTT
65 AGCCCTTT
* *
182333030 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTAGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTAGATAACTGGGGCATA
182333093 AGCCCTTT
65 AGCCCTTT
182333101 T
1 T
182333102 TCACTTCCTC
Statistics
Matches: 67, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
70 1 0.01
71 53 0.79
72 13 0.19
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTAGATAACTGGGGCATAA
GCCCTTT
Found at i:182333177 original size:20 final size:20
Alignment explanation
Indices: 182333152--182333231 Score: 142
Period size: 20 Copynumber: 4.0 Consensus size: 20
182333142 TATGATTACC
182333152 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
182333172 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
*
182333192 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
182333212 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
182333232 CCATATTTAT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 58 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.38
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:182333182 original size:11 final size:11
Alignment explanation
Indices: 182333152--182333226 Score: 63
Period size: 11 Copynumber: 7.4 Consensus size: 11
182333142 TATGATTACC
182333152 TCATGTGCATA
1 TCATGTGCATA
*
182333163 TCA--TACATA
1 TCATGTGCATA
182333172 TCATGTGCATA
1 TCATGTGCATA
* *
182333183 TCA--TACATT
1 TCATGTGCATA
182333192 TCATGTGCATA
1 TCATGTGCATA
* *
182333203 TCA--TACATT
1 TCATGTGCATA
182333212 TCATGTGCATA
1 TCATGTGCATA
182333223 TCAT
1 TCAT
182333227 ACATACCATA
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
9 22 0.46
11 26 0.54
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.39
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:182333306 original size:25 final size:25
Alignment explanation
Indices: 182333274--182333321 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
182333264 ATACATAAAC
* * *
182333274 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
182333299 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
182333322 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:182343608 original size:50 final size:50
Alignment explanation
Indices: 182343533--182343858 Score: 546
Period size: 50 Copynumber: 6.5 Consensus size: 50
182343523 CCATGGCAAC
* *
182343533 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
182343583 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
182343633 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
182343683 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGATAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
182343733 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
182343782 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGGC
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT-GA
* * *
182343833 AAGTAAAAAGTGGTAGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
182343859 CTGATCATCG
Statistics
Matches: 260, Mismatches: 14, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
49 46 0.18
50 191 0.73
51 23 0.09
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:182348818 original size:50 final size:50
Alignment explanation
Indices: 182348743--182349069 Score: 519
Period size: 50 Copynumber: 6.5 Consensus size: 50
182348733 CCATGGTAAC
* * *
182348743 AAGTGATGAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
182348793 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
182348843 AAGTGAAAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
182348893 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGATAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
182348943 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
182348993 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATTAAGGACAAATGGC
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT-GA
* * *
182349044 AAGTAAAAAGTGGTAGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
182349070 CTGATCATCG
Statistics
Matches: 256, Mismatches: 20, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
50 233 0.91
51 23 0.09
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:182361955 original size:40 final size:39
Alignment explanation
Indices: 182361910--182362039 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
182361900 CGGAATATAA
182361910 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
182361950 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
182361990 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
182362030 CCGGATATAA
1 CCGGATATAA
182362040 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:182362054 original size:40 final size:40
Alignment explanation
Indices: 182361926--182362077 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
182361916 ATAACCATGT
* * *
182361926 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
182361966 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
182362006 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
182362046 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
182362078 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:182362060 original size:80 final size:80
Alignment explanation
Indices: 182361926--182362075 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
182361916 ATAACCATGT
*
182361926 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
182361990 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
182362006 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
182362069 CCCGGAT
64 CCCGGAT
182362076 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:182376283 original size:40 final size:39
Alignment explanation
Indices: 182376219--182376459 Score: 200
Period size: 40 Copynumber: 6.1 Consensus size: 39
182376209 TTATTGAATG
*
182376219 ATTGCACTTACATGCCTCTGTTTGTACTTCGATACCCCTA
1 ATTGCACTTACATGCCCCTGTTTGTACTTC-ATACCCCTA
* * **
182376259 ATTGCACTTACCTGCCCCTATTTGTACTTCAGTACCCCCG
1 ATTGCACTTACATGCCCCTGTTTGTACTTCA-TACCCCTA
* * * * *
182376299 ATTGGACTTACATGCCCTTGTTTGTAATTCACTACTCCTG
1 ATTGCACTTACATGCCCCTGTTTGTACTTCA-TACCCCTA
* **
182376339 ATTGCACTTACATGCCCCTGTTTGAACTTTGGTACCCCTA
1 ATTGCACTTACATGCCCCTGTTTGTAC-TTCATACCCCTA
* * * *
182376379 ATTACAC-TACGTGCCGCTGTTTTTACTTCAATACCCCTGA
1 ATTGCACTTACATGCCCCTGTTTGTACTTC-ATACCCCT-A
* * * *
182376419 A-TGCACAT-CTTTGCCACTGTTTGCACTTCATTACCCCTA
1 ATTGCACTTAC-ATGCCCCTGTTTGTACTTCA-TACCCCTA
182376458 AT
1 AT
182376460 CACACATTCG
Statistics
Matches: 160, Mismatches: 33, Indels: 16
0.77 0.16 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 125 0.78
41 2 0.01
ACGTcount: A:0.20, C:0.31, G:0.13, T:0.36
Consensus pattern (39 bp):
ATTGCACTTACATGCCCCTGTTTGTACTTCATACCCCTA
Found at i:182376367 original size:20 final size:20
Alignment explanation
Indices: 182376224--182376367 Score: 62
Period size: 20 Copynumber: 7.2 Consensus size: 20
182376214 GAATGATTGC
* *
182376224 ACTTACATGCCTCTGTTTGT
1 ACTTACATGCCCCTGTTTGA
* ** *
182376244 ACTT-CGATACCCCTAATTGC
1 ACTTAC-ATGCCCCTGTTTGA
* * *
182376264 ACTTACCTGCCCCTATTTGT
1 ACTTACATGCCCCTGTTTGA
* * * *
182376284 ACTT-CAGTACCCCCGATTGG
1 ACTTACA-TGCCCCTGTTTGA
*
182376304 ACTTACATGCCCTTGTTTGTA
1 ACTTACATGCCCCTGTTTG-A
* * * *
182376325 A-TT-CACTACTCCTGATTGC
1 ACTTACA-TGCCCCTGTTTGA
182376344 ACTTACATGCCCCTGTTTGA
1 ACTTACATGCCCCTGTTTGA
182376364 ACTT
1 ACTT
182376368 TGGTACCCCT
Statistics
Matches: 87, Mismatches: 29, Indels: 16
0.66 0.22 0.12
Matches are distributed among these distances:
19 5 0.06
20 76 0.87
21 6 0.07
ACGTcount: A:0.19, C:0.31, G:0.13, T:0.37
Consensus pattern (20 bp):
ACTTACATGCCCCTGTTTGA
Found at i:182376689 original size:24 final size:23
Alignment explanation
Indices: 182376618--182376689 Score: 58
Period size: 24 Copynumber: 3.0 Consensus size: 23
182376608 GTTAAGAACC
*
182376618 TATGAAAAGGTATGAATT-GTTGAT
1 TATGAAAA-GTATG-ATTATTTGAT
* *
182376642 TAT-CAAAGTATGAATATTCATGAT
1 TATGAAAAGTATGATTATT--TGAT
182376666 TATGAAAAGTATGATTTATTTGAT
1 TATGAAAAGTATGA-TTATTTGAT
182376690 GCTATGTTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
21 2 0.05
22 6 0.16
23 3 0.08
24 14 0.37
25 9 0.24
26 4 0.11
ACGTcount: A:0.39, C:0.03, G:0.18, T:0.40
Consensus pattern (23 bp):
TATGAAAAGTATGATTATTTGAT
Found at i:182378256 original size:44 final size:42
Alignment explanation
Indices: 182378208--182378323 Score: 105
Period size: 44 Copynumber: 2.8 Consensus size: 42
182378198 AACAGTCAGT
* * * *
182378208 CGAAGCTAGAAT-GATTTTGCACACTTAGTGCCATCTCAATTAGC
1 CGAAGCTAGAATCAATATCGCACACTTAGTGCC-TCAC-A-TAGC
*
182378252 CGAAGCTA-AGTCAATATCGCACACTTAGTGCCTCACATAGC
1 CGAAGCTAGAATCAATATCGCACACTTAGTGCCTCACATAGC
* * *
182378293 CGAAGCTAG-TTTAA-ATCACACACTTAGTGCC
1 CGAAGCTAGAATCAATATCGCACACTTAGTGCC
182378324 AAATACTATT
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
40 16 0.26
41 15 0.24
42 1 0.02
43 5 0.08
44 25 0.40
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (42 bp):
CGAAGCTAGAATCAATATCGCACACTTAGTGCCTCACATAGC
Found at i:182384877 original size:20 final size:20
Alignment explanation
Indices: 182384862--182384899 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
182384852 AATCAGCTCA
*
182384862 CTTGAGCTTATTTCAGCTAG
1 CTTGAGCTCATTTCAGCTAG
*
182384882 TTTGAGCTCATTTCAGCT
1 CTTGAGCTCATTTCAGCT
182384900 TCTATCCAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.42
Consensus pattern (20 bp):
CTTGAGCTCATTTCAGCTAG
Found at i:182387330 original size:40 final size:40
Alignment explanation
Indices: 182387283--182387485 Score: 245
Period size: 40 Copynumber: 5.1 Consensus size: 40
182387273 CGGGCTTTAA
* *
182387283 CCGGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGC
* *
182387323 CCGGATATAGT-AGTTCGCACAAATGCCGTCGGGACTTAGC
1 CCGGATATAGTCA-CTCGCACAAATGCCTTCGGGACTTAGC
* *
182387363 CCGGATATAAT-ACTTCTCACAAATGCCTTCGGGACTTAG-
1 CCGGATATAGTCAC-TCGCACAAATGCCTTCGGGACTTAGC
* * *
182387402 CCGGA-ATTAGTAACTGGCACAAATGCCTTCAGGACTTAGC
1 CCGGATA-TAGTCACTCGCACAAATGCCTTCGGGACTTAGC
*
182387442 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTCACTCGCACAAATGCCTTCGGGACTTAGC
182387482 CCGG
1 CCGG
182387486 TTATCATCCG
Statistics
Matches: 143, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
38 1 0.01
39 31 0.22
40 111 0.78
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:182387442 original size:79 final size:79
Alignment explanation
Indices: 182387302--182387482 Score: 233
Period size: 79 Copynumber: 2.3 Consensus size: 79
182387292 GCCACTCGCT
** *
182387302 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATGCCGTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATGCCGTCAGGACTTAGCCCGG
**
182387367 -ATATAAT-ACTTCTCA
65 AAT-TAATCAC-TAGCA
* *
182387382 CAAATGCCTTCGGGACTTAGCCGGA-ATTAGTAACTGGCACAAATGCCTTCAGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCGGATA-TAGTAACTCGCACAAATGCCGTCAGGACTTAGCCCGG
*
182387446 AATTAGTCACTAGCA
65 AATTAATCACTAGCA
182387461 CAAATGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
182387483 CGGTTATCAT
Statistics
Matches: 90, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 65 0.72
80 24 0.27
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCCGTCAGGACTTAGCCCGGA
ATTAATCACTAGCA
Found at i:182389634 original size:13 final size:13
Alignment explanation
Indices: 182389616--182389642 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
182389606 CAAGCCAGTA
182389616 CGAATCGGTTCTT
1 CGAATCGGTTCTT
182389629 CGAATCGGTTCTT
1 CGAATCGGTTCTT
182389642 C
1 C
182389643 TTCATAACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (13 bp):
CGAATCGGTTCTT
Found at i:182395967 original size:40 final size:40
Alignment explanation
Indices: 182395865--182395998 Score: 146
Period size: 40 Copynumber: 3.4 Consensus size: 40
182395855 AAATTGAATG
* * * * *
182395865 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
182395905 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
182395945 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
*
182395985 AAATCCGGGCTAAG
1 ATATCCGGGCTAAG
182395999 CCGGGCATTT
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 76 0.95
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:182404059 original size:40 final size:39
Alignment explanation
Indices: 182403891--182404061 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
182403881 AGAAATTGAA
* *
182403891 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
182403931 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
182403971 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
182404011 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
182404051 TGATATCCGGG
1 TGATATCCGGG
182404062 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:182412002 original size:39 final size:38
Alignment explanation
Indices: 182411921--182412060 Score: 153
Period size: 39 Copynumber: 3.7 Consensus size: 38
182411911 AAATTGAATG
* * *
182411921 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTCGTGC--G-AGTT
* *
182411960 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGT--T
182411999 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTT
*
182412036 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
182412061 TTTGCAAATC
Statistics
Matches: 88, Mismatches: 8, Indels: 11
0.82 0.07 0.10
Matches are distributed among these distances:
37 26 0.30
38 3 0.03
39 44 0.50
40 15 0.17
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (38 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTT
Found at i:182412050 original size:37 final size:37
Alignment explanation
Indices: 182411959--182412140 Score: 163
Period size: 37 Copynumber: 4.8 Consensus size: 37
182411949 TGCTGGAAAT
* *
182411959 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGT-C
182411998 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTC
* * *
182412035 TCTATCCGGGCTAAGACCCGAAGGCATT-TGCAAATC
1 TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTC
* * *
182412071 GTGATATCCGGG-TAAGTCCCGAAGGCCTTGGTGCGGGTTAC
1 -T-ATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAG-T-C
* * * *
182412112 CATAACCGGGCTATGTCCCGAAGGCATTG
1 TATATCCGGGCTAAGACCCGAAGGCATTG
182412141 AACGAGTGAC
Statistics
Matches: 119, Mismatches: 15, Indels: 18
0.78 0.10 0.12
Matches are distributed among these distances:
35 5 0.04
37 43 0.36
38 11 0.09
39 43 0.36
40 16 0.13
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (37 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTC
Found at i:182412134 original size:77 final size:75
Alignment explanation
Indices: 182411964--182412139 Score: 187
Period size: 74 Copynumber: 2.3 Consensus size: 75
182411954 GAAATTATAT
* * *
182411964 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGT-GCT-ATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGGC-ATT-TGCAAATCG-TGATATCCGGGCTAAGACCCGAAGGCATTC
*
182412027 GTGCGAGTTCTAT
63 GTGCGAGTTCTAA
* * *
182412040 CCGGGCTAAGACCCGAAGGCATTTGCAAATCGTGATATCCGGG-TAAGTCCCGAAGGCCTTGGTG
1 CCGGGCTAAGACCCGAAGGCATTTGCAAATCGTGATATCCGGGCTAAGACCCGAAGGCATTCGTG
*
182412104 CGGGTTACCATAA
66 CGAGTT--C-TAA
* *
182412117 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGACCCGAAGGCATT
182412140 GAACGAGTGA
Statistics
Matches: 85, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
74 29 0.34
75 13 0.15
76 20 0.24
77 23 0.27
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.22
Consensus pattern (75 bp):
CCGGGCTAAGACCCGAAGGCATTTGCAAATCGTGATATCCGGGCTAAGACCCGAAGGCATTCGTG
CGAGTTCTAA
Done.