Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 584 of 770
Found at i:182421997 original size:29 final size:29
Alignment explanation
Indices: 182421964--182422095 Score: 219
Period size: 29 Copynumber: 4.6 Consensus size: 29
182421954 CCTTCGAGCT
** * *
182421964 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
182421993 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
182422022 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
182422051 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
182422080 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
182422096 ATCTCGTCAC
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 97 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:182421998 original size:58 final size:58
Alignment explanation
Indices: 182421935--182422095 Score: 187
Period size: 58 Copynumber: 2.8 Consensus size: 58
182421925 AATTTAAGCC
* * * * * *
182421935 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * * **
182421993 TGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * **
182422051 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCA
182422096 ATCTCGTCAC
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 91 1.00
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
Found at i:182422026 original size:87 final size:87
Alignment explanation
Indices: 182421935--182422095 Score: 223
Period size: 87 Copynumber: 1.9 Consensus size: 87
182421925 AATTTAAGCC
* * * * * *
182421935 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCATGCACAC
1 CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
182422000 TTAGTGCCATATATTTCCAGCA
66 TTAGTGCCATATATTTCCAGCA
* * * **
182422022 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
182422087 TTAGTGCCA
66 TTAGTGCCA
182422096 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
87 63 1.00
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (87 bp):
CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
TTAGTGCCATATATTTCCAGCA
Found at i:182430038 original size:29 final size:29
Alignment explanation
Indices: 182430005--182430136 Score: 219
Period size: 29 Copynumber: 4.6 Consensus size: 29
182429995 CCTTCGAGCT
** * *
182430005 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
182430034 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
182430063 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
182430092 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
182430121 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
182430137 ATCTCGTCAC
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 97 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:182430039 original size:58 final size:58
Alignment explanation
Indices: 182429976--182430136 Score: 187
Period size: 58 Copynumber: 2.8 Consensus size: 58
182429966 AATTTAAGCC
* * * * * *
182429976 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * * **
182430034 TGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * **
182430092 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCA
182430137 ATCTCGTCAC
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 91 1.00
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
Found at i:182430067 original size:87 final size:87
Alignment explanation
Indices: 182429976--182430136 Score: 223
Period size: 87 Copynumber: 1.9 Consensus size: 87
182429966 AATTTAAGCC
* * * * * *
182429976 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCATGCACAC
1 CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
182430041 TTAGTGCCATATATTTCCAGCA
66 TTAGTGCCATATATTTCCAGCA
* * * **
182430063 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
182430128 TTAGTGCCA
66 TTAGTGCCA
182430137 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
87 63 1.00
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (87 bp):
CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
TTAGTGCCATATATTTCCAGCA
Found at i:182434861 original size:29 final size:29
Alignment explanation
Indices: 182434828--182434892 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
182434818 GTGATGAGAT
182434828 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
182434857 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
182434886 CGGCACT
1 TGGCACT
182434893 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:182437822 original size:28 final size:28
Alignment explanation
Indices: 182437790--182437888 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
182437780 GCAATAAGCC
*
182437790 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
182437818 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
182437846 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
182437875 CGCACACTTAGTGC
1 CGCACACTTAGTGC
182437889 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:182445501 original size:28 final size:28
Alignment explanation
Indices: 182445469--182445567 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
182445459 GCAATAAGCC
*
182445469 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
182445497 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
182445525 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
182445554 CGCACACTTAGTGC
1 CGCACACTTAGTGC
182445568 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:182451276 original size:40 final size:39
Alignment explanation
Indices: 182451232--182451360 Score: 111
Period size: 40 Copynumber: 3.3 Consensus size: 39
182451222 GACTCGCTCA
*
182451232 AATGCCTTCGGGAC-GAAGCCC-GGTTATAGCGACTTGCAC
1 AATGCCTTCGGGACTGAA-CCCGGGTT-TAGCAACTTGCAC
* *
182451271 GAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC
1 -AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
* * * * ** *
182451311 AAAGCCTTCGGGA-TTAGCCCGGATTTATTAACTCGCAC
1 AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
182451349 GAATGCCTTCGG
1 -AATGCCTTCGG
182451361 ATCCTAGTCC
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
38 21 0.27
39 22 0.29
40 28 0.36
41 6 0.08
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
Found at i:182451360 original size:78 final size:80
Alignment explanation
Indices: 182451267--182451413 Score: 210
Period size: 78 Copynumber: 1.9 Consensus size: 80
182451257 ATAGCGACTT
* * *
182451267 GCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAAAGCCTTCGGGA-TTAGC
1 GCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGC
182451329 CCGGATTTATTAACTC
65 CCGGATTTATTAACTC
** *
182451345 GCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
1 GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
182451410 CGGA
66 CGGA
182451414 CATCATTCGA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
77 3 0.05
78 30 0.50
79 17 0.28
80 10 0.17
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
CGGATTTATTAACTC
Found at i:182451397 original size:40 final size:37
Alignment explanation
Indices: 182451248--182451413 Score: 125
Period size: 40 Copynumber: 4.2 Consensus size: 37
182451238 TTCGGGACGA
* ** *
182451248 AGCCCGGTTATAGCGACTTGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTC-GGA-TT
* * *
182451288 AACCCGGGTTTAGTAACTTGCACAAAGCCTTCGGGATT
1 AGCCCGGATATAGTAACTTGCACAAAGCCTTC-GGATT
* * * *
182451326 AGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTCGGAT--T
* *
182451366 AGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTT-GCACAAAGCCTTC-GGA-TT
182451406 AGCCCGGA
1 AGCCCGGA
182451414 CATCATTCGA
Statistics
Matches: 102, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
38 25 0.25
39 20 0.20
40 49 0.48
41 7 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (37 bp):
AGCCCGGATATAGTAACTTGCACAAAGCCTTCGGATT
Found at i:182459355 original size:40 final size:39
Alignment explanation
Indices: 182459311--182459439 Score: 111
Period size: 40 Copynumber: 3.3 Consensus size: 39
182459301 GACTCGCTCA
*
182459311 AATGCCTTCGGGAC-GAAGCCC-GGTTATAGCGACTTGCAC
1 AATGCCTTCGGGACTGAA-CCCGGGTT-TAGCAACTTGCAC
* *
182459350 GAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC
1 -AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
* * * * ** *
182459390 AAAGCCTTCGGGA-TTAGCCCGGATTTATTAACTCGCAC
1 AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
182459428 GAATGCCTTCGG
1 -AATGCCTTCGG
182459440 ATCCTAGTCC
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
38 21 0.27
39 22 0.29
40 28 0.36
41 6 0.08
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
Found at i:182459439 original size:78 final size:80
Alignment explanation
Indices: 182459346--182459492 Score: 210
Period size: 78 Copynumber: 1.9 Consensus size: 80
182459336 ATAGCGACTT
* * *
182459346 GCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAAAGCCTTCGGGA-TTAGC
1 GCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGC
182459408 CCGGATTTATTAACTC
65 CCGGATTTATTAACTC
** *
182459424 GCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
1 GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
182459489 CGGA
66 CGGA
182459493 CATCATTCGA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
77 3 0.05
78 30 0.50
79 17 0.28
80 10 0.17
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
CGGATTTATTAACTC
Found at i:182459476 original size:40 final size:37
Alignment explanation
Indices: 182459327--182459492 Score: 125
Period size: 40 Copynumber: 4.2 Consensus size: 37
182459317 TTCGGGACGA
* ** *
182459327 AGCCCGGTTATAGCGACTTGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTC-GGA-TT
* * *
182459367 AACCCGGGTTTAGTAACTTGCACAAAGCCTTCGGGATT
1 AGCCCGGATATAGTAACTTGCACAAAGCCTTC-GGATT
* * * *
182459405 AGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTCGGAT--T
* *
182459445 AGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTT-GCACAAAGCCTTC-GGA-TT
182459485 AGCCCGGA
1 AGCCCGGA
182459493 CATCATTCGA
Statistics
Matches: 102, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
38 25 0.25
39 20 0.20
40 49 0.48
41 7 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (37 bp):
AGCCCGGATATAGTAACTTGCACAAAGCCTTCGGATT
Found at i:182467432 original size:40 final size:39
Alignment explanation
Indices: 182467388--182467516 Score: 111
Period size: 40 Copynumber: 3.3 Consensus size: 39
182467378 GACTCGCTCA
*
182467388 AATGCCTTCGGGAC-GAAGCCC-GGTTATAGCGACTTGCAC
1 AATGCCTTCGGGACTGAA-CCCGGGTT-TAGCAACTTGCAC
* *
182467427 GAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC
1 -AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
* * * * ** *
182467467 AAAGCCTTCGGGA-TTAGCCCGGATTTATTAACTCGCAC
1 AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
182467505 GAATGCCTTCGG
1 -AATGCCTTCGG
182467517 ATCCTAGTCC
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
38 21 0.27
39 22 0.29
40 28 0.36
41 6 0.08
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
Found at i:182467516 original size:78 final size:80
Alignment explanation
Indices: 182467423--182467569 Score: 210
Period size: 78 Copynumber: 1.9 Consensus size: 80
182467413 ATAGCGACTT
* * *
182467423 GCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAAAGCCTTCGGGA-TTAGC
1 GCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGC
182467485 CCGGATTTATTAACTC
65 CCGGATTTATTAACTC
** *
182467501 GCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
1 GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
182467566 CGGA
66 CGGA
182467570 CATCATTCGA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
77 3 0.05
78 30 0.50
79 17 0.28
80 10 0.17
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
CGGATTTATTAACTC
Found at i:182467553 original size:40 final size:37
Alignment explanation
Indices: 182467404--182467569 Score: 125
Period size: 40 Copynumber: 4.2 Consensus size: 37
182467394 TTCGGGACGA
* ** *
182467404 AGCCCGGTTATAGCGACTTGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTC-GGA-TT
* * *
182467444 AACCCGGGTTTAGTAACTTGCACAAAGCCTTCGGGATT
1 AGCCCGGATATAGTAACTTGCACAAAGCCTTC-GGATT
* * * *
182467482 AGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTCGGAT--T
* *
182467522 AGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTT-GCACAAAGCCTTC-GGA-TT
182467562 AGCCCGGA
1 AGCCCGGA
182467570 CATCATTCGA
Statistics
Matches: 102, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
38 25 0.25
39 20 0.20
40 49 0.48
41 7 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (37 bp):
AGCCCGGATATAGTAACTTGCACAAAGCCTTCGGATT
Found at i:182472201 original size:123 final size:123
Alignment explanation
Indices: 182471982--182472443 Score: 843
Period size: 123 Copynumber: 3.8 Consensus size: 123
182471972 GAATTATGTG
*
182471982 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
182472047 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
182472105 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
182472170 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
182472228 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
182472293 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
* * * * *
182472351 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
182472416 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
182472444 AATTATATCC
Statistics
Matches: 330, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
123 330 1.00
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
Found at i:182472210 original size:64 final size:64
Alignment explanation
Indices: 182472133--182472325 Score: 150
Period size: 64 Copynumber: 3.1 Consensus size: 64
182472123 TAATGATTAT
182472133 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
* * * ** * *** * *** * * *
182472197 TGATATGTTTGTGTTTGAG-CCTT--A--GTA-ACGAAAATGAAATATGGATGTGTAATGAT--T
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCG-GGCT-AAGTCCCGAAG-GCAATTATGCT
*
182472254 AT
63 AG
182472256 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
182472320 TGATAT
1 TGATAT
182472326 GTTTGTGTTC
Statistics
Matches: 84, Mismatches: 34, Indels: 22
0.60 0.24 0.16
Matches are distributed among these distances:
58 2 0.02
59 22 0.26
60 8 0.10
61 7 0.08
62 7 0.08
63 8 0.10
64 28 0.33
65 2 0.02
ACGTcount: A:0.28, C:0.11, G:0.26, T:0.34
Consensus pattern (64 bp):
TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
Found at i:182472609 original size:40 final size:40
Alignment explanation
Indices: 182472412--182472615 Score: 237
Period size: 40 Copynumber: 5.1 Consensus size: 40
182472402 TGAATGATAC
* * * * **
182472412 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * * **
182472452 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* *
182472492 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* *
182472532 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * **
182472572 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
182472612 CCGG
1 CCGG
182472616 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
Found at i:182479700 original size:123 final size:123
Alignment explanation
Indices: 182479481--182479940 Score: 843
Period size: 123 Copynumber: 3.8 Consensus size: 123
182479471 GAATTATGTG
*
182479481 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
182479546 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
182479604 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
182479669 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
182479727 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
182479792 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
* * * *
182479850 AAATGAAATATGGATGTGTAATGATTATTGATATA--TGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
182479913 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
182479941 AATTATATCC
Statistics
Matches: 330, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
121 50 0.15
123 280 0.85
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
Found at i:182479709 original size:64 final size:64
Alignment explanation
Indices: 182479632--182479824 Score: 150
Period size: 64 Copynumber: 3.1 Consensus size: 64
182479622 TAATGATTAT
182479632 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
* * * ** * *** * *** * * *
182479696 TGATATGTTTGTGTTTGAG-CCTT--A--GTA-ACGAAAATGAAATATGGATGTGTAATGAT--T
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCG-GGCT-AAGTCCCGAAG-GCAATTATGCT
*
182479753 AT
63 AG
182479755 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
182479819 TGATAT
1 TGATAT
182479825 GTTTGTGTTT
Statistics
Matches: 84, Mismatches: 34, Indels: 22
0.60 0.24 0.16
Matches are distributed among these distances:
58 2 0.02
59 22 0.26
60 8 0.10
61 7 0.08
62 7 0.08
63 8 0.10
64 28 0.33
65 2 0.02
ACGTcount: A:0.28, C:0.11, G:0.26, T:0.34
Consensus pattern (64 bp):
TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
Found at i:182479964 original size:40 final size:40
Alignment explanation
Indices: 182479909--182480152 Score: 301
Period size: 40 Copynumber: 6.1 Consensus size: 40
182479899 TGAATGATAC
* * * * **
182479909 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
182479949 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
182479989 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
182480029 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
182480069 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
182480109 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
182480149 CCGG
1 CCGG
182480153 TTGTATTCCG
Statistics
Matches: 182, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 180 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:182485572 original size:48 final size:48
Alignment explanation
Indices: 182485516--182485857 Score: 614
Period size: 48 Copynumber: 7.1 Consensus size: 48
182485506 GCTGAAATTG
* *
182485516 ATGTATGAGATAAGTATATGTGGTTAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
182485564 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
182485612 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
182485660 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
182485707 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
*
182485757 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
182485805 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
182485853 ATGTA
1 ATGTA
182485858 GGCGATGTGT
Statistics
Matches: 284, Mismatches: 7, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
47 46 0.16
48 191 0.67
49 3 0.01
50 44 0.15
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:182486112 original size:37 final size:37
Alignment explanation
Indices: 182486004--182486112 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
182485994 GGAAATATAT
* *
182486004 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
182486041 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
182486078 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
182486113 CATCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:182490693 original size:40 final size:40
Alignment explanation
Indices: 182490571--182490754 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
182490561 TATTCGAATG
* *
182490571 ATATCCGGGCTAAGTCCCGAA-GCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
182490611 ATAACCGGACTAAGATCCGAAGGTATTCGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AG-TGACT
*
182490651 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * *
182490691 ATATCCGGGTTAAGTCCCGAAGGCATCTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
182490731 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
182490755 CTTGTGCAAG
Statistics
Matches: 119, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 1 0.01
40 108 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:182496677 original size:40 final size:39
Alignment explanation
Indices: 182496590--182496733 Score: 109
Period size: 40 Copynumber: 3.6 Consensus size: 39
182496580 ATAATATCAG
* * * *
182496590 GGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-TATCC
1 GGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TACTATCC
* * *
182496629 AGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC-ATCC
1 -GGCTAAGACCCGAAGGCAATTGTGC--GAGACATACTATCC
*
182496669 GGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTCTATCC
1 -GGCTAAGACCCGAAGGCAATT-GTGCGAGACATACTATCC
*
182496709 GGCTAAGACCCGAAGGCATTTGTGC
1 GGCTAAGACCCGAAGGCAATTGTGC
182496734 ACGTGGTTAT
Statistics
Matches: 84, Mismatches: 13, Indels: 15
0.75 0.12 0.13
Matches are distributed among these distances:
38 3 0.04
39 26 0.31
40 53 0.63
41 1 0.01
42 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (39 bp):
GGCTAAGACCCGAAGGCAATTGTGCGAGACATACTATCC
Found at i:182496749 original size:39 final size:40
Alignment explanation
Indices: 182496621--182496747 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 40
182496611 ATGCTGGAAA
* * *
182496621 TTATATCCAGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * * ***
182496661 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
182496701 TTCTATCC-GGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCAGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
182496740 TTATATCC
1 TTATATCC
182496748 GGTTATATTC
Statistics
Matches: 68, Mismatches: 18, Indels: 3
0.76 0.20 0.03
Matches are distributed among these distances:
38 1 0.01
39 32 0.47
40 35 0.51
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
TTATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:182501313 original size:38 final size:38
Alignment explanation
Indices: 182501271--182501357 Score: 165
Period size: 38 Copynumber: 2.3 Consensus size: 38
182501261 ATAGACATGC
*
182501271 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTTT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
182501309 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
182501347 ATGTTCGGCCA
1 ATGTTCGGCCA
182501358 TAGGTAGCCT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (38 bp):
ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
Found at i:182502046 original size:40 final size:40
Alignment explanation
Indices: 182501952--182502136 Score: 162
Period size: 40 Copynumber: 4.6 Consensus size: 40
182501942 TATTCGAATG
* * * * *
182501952 ATATCCGGGCTAAGTCCTGAAGGCTTTTGT-TCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGT-GA-GTGACT
* ** * *
182501993 ATAACCGAACTAAGATCCGAAGGCATTCGTGTGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGTGAGTGACT
* *
182502033 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTG-TGAGTGACT
* *
182502073 ATATCCGGGCTAAGTCCCGAAGGCA-TC-TGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGTG--AGTGACT
*
182502113 ATATCCAGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
182502137 CTTGTGCAAG
Statistics
Matches: 116, Mismatches: 23, Indels: 11
0.77 0.15 0.07
Matches are distributed among these distances:
37 1 0.01
38 2 0.02
39 1 0.01
40 87 0.75
41 24 0.21
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGTGAGTGACT
Found at i:182502117 original size:80 final size:81
Alignment explanation
Indices: 182501952--182502136 Score: 216
Period size: 80 Copynumber: 2.3 Consensus size: 81
182501942 TATTCGAATG
* * * * *
182501952 ATATCCGGGCTAAGTCCTGAAGGCTTTTGTTCTAGGTGACTATAACCGAACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGAACTAAGATCCGAAGGC
* *
182502017 ATTCGTGTGAGTTACT
66 ATTCGTGTGAGTGACC
* **
182502033 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGAACTAAGAT-CCGAAGG
182502096 CA-TC-TGTGCTAGTGACC
65 CATTCGTGTG--AGTGACC
*
182502113 ATATCCAGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
182502137 CTTGTGCAAG
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
78 4 0.04
79 3 0.03
80 53 0.59
81 30 0.33
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGAACTAAGATCCGAAGGC
ATTCGTGTGAGTGACC
Found at i:182507227 original size:25 final size:26
Alignment explanation
Indices: 182507190--182507241 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
182507180 TCAAACATGC
182507190 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAA-TTAACTCCTAGGGGT
* *
182507216 ATTTTGGT-AATTATCTCCTAGGGGT
1 ATTTAGGTCAATTAACTCCTAGGGGT
182507241 A
1 A
182507242 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 4 0.17
25 12 0.52
26 7 0.30
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTAACTCCTAGGGGT
Found at i:182519711 original size:2 final size:2
Alignment explanation
Indices: 182519706--182519766 Score: 65
Period size: 2 Copynumber: 32.0 Consensus size: 2
182519696 AACTAATGGC
* * *
182519706 AT AT AT AC AT A- AT AT AT AT AT AT AT A- AT AC AC AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
182519745 AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
182519767 TAGAAATGAT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
1 3 0.06
2 47 0.94
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (2 bp):
AT
Found at i:182521039 original size:35 final size:35
Alignment explanation
Indices: 182521000--182521070 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
182520990 GGGGTGTGTG
*
182521000 ATGGTGTTGGTGGCAGACAGCATGGGAGAATGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAATGGGA
*
182521035 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAATGGGA
182521070 A
1 A
182521071 GAGGCAAGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.25, C:0.10, G:0.46, T:0.18
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAATGGGA
Found at i:182525930 original size:16 final size:15
Alignment explanation
Indices: 182525909--182525956 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
182525899 GATGTGAATA
182525909 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
182525925 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
182525940 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
182525956 A
1 A
182525957 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:182525932 original size:24 final size:24
Alignment explanation
Indices: 182525905--182525960 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
182525895 TAATGATGTG
*
182525905 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
182525929 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
182525953 AATAATAA
1 AATAATAA
182525961 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:182525939 original size:8 final size:8
Alignment explanation
Indices: 182525905--182525956 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
182525895 TAATGATGTG
*
182525905 AATAATAA
1 AATATTAA
182525913 AATATATAA
1 AATAT-TAA
182525922 AATA-TAA
1 AATATTAA
182525929 AATATTAA
1 AATATTAA
*
182525937 AATATCAA
1 AATATTAA
*
182525945 AATATTAG
1 AATATTAA
182525953 AATA
1 AATA
182525957 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:182526139 original size:25 final size:25
Alignment explanation
Indices: 182526111--182526159 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
182526101 CGTGATAATA
**
182526111 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATACATACATAATATAGTG
182526136 TTAAAAATACATACATAATATAGT
1 TTAAAAATACATACATAATATAGT
182526160 TAAGATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.51, C:0.06, G:0.08, T:0.35
Consensus pattern (25 bp):
TTAAAAATACATACATAATATAGTG
Found at i:182526195 original size:2 final size:2
Alignment explanation
Indices: 182526188--182526267 Score: 60
Period size: 2 Copynumber: 41.5 Consensus size: 2
182526178 TAACATGTAA
* *
182526188 AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT A- AT AT AA AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * *
182526228 AA AG AT AT AT AC AT A- AA AT AGT AT A- AA AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT A
182526268 CGTAATATAG
Statistics
Matches: 62, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
1 4 0.06
2 56 0.90
3 2 0.03
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (2 bp):
AT
Found at i:182526314 original size:55 final size:54
Alignment explanation
Indices: 182526200--182526322 Score: 128
Period size: 53 Copynumber: 2.3 Consensus size: 54
182526190 ATATATATAT
*
182526200 ATATATATATATATAAATAATATAAATTAAAGATATATACATAAAATAGTATAA
1 ATATATATATATATAAATAATATAAATTAAAGATATATACATAAAATAGTAAAA
** * * * *
182526254 A-ATATATATATATACGTAATATAGAATTTAA-A-ATATACCTAATATATTAAAA
1 ATATATATATATATAAATAATATA-AATTAAAGATATATACATAAAATAGTAAAA
182526306 GA-ATATATATAATATAA
1 -ATATATATAT-ATATAA
182526323 TATTAAGAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
52 16 0.28
53 30 0.52
54 12 0.21
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.36
Consensus pattern (54 bp):
ATATATATATATATAAATAATATAAATTAAAGATATATACATAAAATAGTAAAA
Found at i:182526340 original size:23 final size:25
Alignment explanation
Indices: 182526297--182526342 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
182526287 TATACCTAAT
182526297 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
182526322 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
182526343 ACAAAAAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:182526904 original size:30 final size:31
Alignment explanation
Indices: 182526834--182526948 Score: 121
Period size: 30 Copynumber: 3.8 Consensus size: 31
182526824 TAGGTACAAG
*
182526834 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGAGCAAGGTGTGGCTAGTGGAGT
* ** *
182526864 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGAGCAAGGTGTGGCTAGTGGAGT
*
182526894 TGGTGGTGGAG-AAGGTGTGGCTAGTGAAGT
1 TGGTGGTGGAGCAAGGTGTGGCTAGTGGAGT
* * *
182526924 TGGTGGTAGA-AAATGTGTGGCTAGT
1 TGGTGGTGGAGCAAGGTGTGGCTAGT
182526949 TGAGAAAAAT
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
29 2 0.03
30 69 0.97
ACGTcount: A:0.22, C:0.04, G:0.45, T:0.29
Consensus pattern (31 bp):
TGGTGGTGGAGCAAGGTGTGGCTAGTGGAGT
Found at i:182530833 original size:19 final size:20
Alignment explanation
Indices: 182530809--182530847 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
182530799 GAAAAATTCA
*
182530809 AATTGA-TTTCTAAATTTCT
1 AATTGAGTTTCTAAACTTCT
*
182530828 AATTGAGTTTTTAAACTTCT
1 AATTGAGTTTCTAAACTTCT
182530848 TGTTTCATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.51
Consensus pattern (20 bp):
AATTGAGTTTCTAAACTTCT
Found at i:182531979 original size:2 final size:2
Alignment explanation
Indices: 182531972--182532012 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
182531962 GGGTAATGGC
182531972 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
182532013 GCTTTTAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:182535903 original size:18 final size:18
Alignment explanation
Indices: 182535880--182535935 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
182535870 CCACCACCAA
182535880 CTCCACTAACCACACTTG
1 CTCCACTAACCACACTTG
*
182535898 CTCCAC-CACCA-A----
1 CTCCACTAACCACACTTG
*
182535910 CTCCACTAGCCACACTTG
1 CTCCACTAACCACACTTG
182535928 CTCCACTA
1 CTCCACTA
182535936 CCTACTCCAC
Statistics
Matches: 29, Mismatches: 3, Indels: 12
0.66 0.07 0.27
Matches are distributed among these distances:
12 6 0.21
13 3 0.10
14 1 0.03
16 1 0.03
17 4 0.14
18 14 0.48
ACGTcount: A:0.27, C:0.48, G:0.05, T:0.20
Consensus pattern (18 bp):
CTCCACTAACCACACTTG
Found at i:182535906 original size:30 final size:30
Alignment explanation
Indices: 182535870--182535968 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
182535860 CTAGGCTTTG
*
182535870 CCACCACCAACTCCACTAACCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
182535900 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
182535930 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
182535960 CCACCACCA
1 CCACCACCA
182535969 CTTATACCTA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.27, C:0.51, G:0.05, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:182535963 original size:18 final size:18
Alignment explanation
Indices: 182535910--182535963 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
182535900 CCACCACCAA
182535910 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
182535928 CTCCACT----AC-C-TA
1 CTCCACTAGCCACACTTG
182535940 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
182535958 CTCCAC
1 CTCCAC
182535964 CACCACTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 8 0.29
13 1 0.04
14 2 0.07
16 2 0.07
17 1 0.04
18 14 0.50
ACGTcount: A:0.22, C:0.48, G:0.07, T:0.22
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:182537922 original size:35 final size:35
Alignment explanation
Indices: 182537878--182538043 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
182537868 TCCTCATTGA
** *
182537878 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
182537913 AATGCCATACCTACATTT-TTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
182537952 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
182537987 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
182538022 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
182538044 CTTTGCCATG
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
34 12 0.10
35 75 0.65
38 2 0.02
39 18 0.16
40 9 0.08
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:182537963 original size:74 final size:73
Alignment explanation
Indices: 182537873--182538043 Score: 217
Period size: 74 Copynumber: 2.4 Consensus size: 73
182537863 GGTTTTCCTC
** * * **
182537873 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTT-TTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
182537936 TCAGTATGG
65 TCAGTATGG
*
182537945 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
182538010 CTCAGTATGG
64 CTCAGTATGG
182538020 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
182538044 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 7, Indels: 10
0.84 0.07 0.10
Matches are distributed among these distances:
70 21 0.24
72 1 0.01
73 9 0.10
74 44 0.50
75 13 0.15
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:182545432 original size:35 final size:35
Alignment explanation
Indices: 182545366--182545531 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
182545356 TCCTCATTGA
* *
182545366 AATACCATACCTACATTT-TCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* ***
182545400 AATGCCATACCTACATTTTTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
182545440 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
182545475 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
182545510 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
182545532 CTTTGCCATG
Statistics
Matches: 116, Mismatches: 10, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
34 17 0.15
35 70 0.60
39 3 0.03
40 26 0.22
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:182545490 original size:75 final size:72
Alignment explanation
Indices: 182545361--182545533 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 72
182545351 GGTTTTCCTC
* * ***
182545361 ATTGAAATACCATACCTACATTTTCA-ACTCGGTATGGGAAATGCCATACCTACATTTTTTAACT
1 ATTGAAATACCATACCTACA-TTTCACACTCAGTATGGGAAATACCATACCTACATTTCACAACT
182545425 CAGTATGG
65 CAGTATGG
182545433 ATTTGATAATACCATACCTACATTTCACAGCTCAGTAT-GGATAATACCATACCTACATTTCACA
1 A-TTGA-AATACCATACCTACATTTCACA-CTCAGTATGGGA-AATACCATACCTACATTTCACA
182545497 ACTCAGTATGG
62 ACTCAGTATGG
182545508 A-TG--ATACCATACCTACATTTCACACT
1 ATTGAAATACCATACCTACATTTCACACT
182545534 TTGCCATGGA
Statistics
Matches: 91, Mismatches: 5, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
69 2 0.02
70 21 0.23
72 1 0.01
73 11 0.12
74 19 0.21
75 37 0.41
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (72 bp):
ATTGAAATACCATACCTACATTTCACACTCAGTATGGGAAATACCATACCTACATTTCACAACTC
AGTATGG
Found at i:182551340 original size:142 final size:145
Alignment explanation
Indices: 182551104--182551386 Score: 369
Period size: 142 Copynumber: 2.0 Consensus size: 145
182551094 AAATCACTAA
* * * *
182551104 TTTTCCTAAAAATCAAAGTTTTTTTTCAAAATAGTTGAAAAAGATCAAAATTTTGTTTTAAAAAT
1 TTTTCCTAAAAATCAAAGGTTTATTTCAAAATAGTTGAAAAAGATCAAAACTTTATTTTAAAAAT
* *
182551169 TTAAACTTTTGCTTTAAAACGACAAAAAAACTA-AATTTTATTTTAAAAGTCTAAAATT-TC-TC
66 TTAAACTTTTGCTTTAAAACGACAAAAAAAATAGAATTTTATTTTAAAAATCTAAAATTCTCTTC
182551231 TTTTAAAAAAATTAT
131 TTTTAAAAAAATTAT
* * * *
182551246 TTTTCTTAAAATTCAAAGGTTTATTTCGAAATAGTTGAAAAAGATCAATACTTTATTTTAAAAAA
1 TTTTCCTAAAAATCAAAGGTTTATTTCAAAATAGTTGAAAAAGATCAAAACTTTATTTT-AAAAA
* * * * *
182551311 TTTAAACTTTT-CTTTTAAAATGAC-TAAAAAATAGATTTTTATTTTAAAAATTTAAACTTCTCT
65 TTTAAACTTTTGC-TTTAAAACGACAAAAAAAATAGAATTTTATTTTAAAAATCTAAAATTCTCT
*
182551374 TTTTTTAAAAAAA
129 TCTTTTAAAAAAA
182551387 ATCAAAACTT
Statistics
Matches: 120, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
142 59 0.49
143 47 0.39
144 2 0.02
145 12 0.10
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.42
Consensus pattern (145 bp):
TTTTCCTAAAAATCAAAGGTTTATTTCAAAATAGTTGAAAAAGATCAAAACTTTATTTTAAAAAT
TTAAACTTTTGCTTTAAAACGACAAAAAAAATAGAATTTTATTTTAAAAATCTAAAATTCTCTTC
TTTTAAAAAAATTAT
Found at i:182551594 original size:22 final size:22
Alignment explanation
Indices: 182551564--182551605 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
182551554 TGGCTAAGGC
182551564 AAAAAAAAAAAA-AAGATAGATG
1 AAAAAAAAAAAAGAA-ATAGATG
*
182551586 AAAAGAAAAAAAGAAATAGA
1 AAAAAAAAAAAAGAAATAGA
182551606 ATACTTGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.79, C:0.00, G:0.14, T:0.07
Consensus pattern (22 bp):
AAAAAAAAAAAAGAAATAGATG
Found at i:182551821 original size:12 final size:12
Alignment explanation
Indices: 182551806--182551839 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
182551796 AAAAGGAAAG
*
182551806 AAAAAGAAAGGA
1 AAAAACAAAGGA
182551818 AAAAACAAAGG-
1 AAAAACAAAGGA
182551829 AAAAACAAAGG
1 AAAAACAAAGG
182551840 CCTCCAATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.74, C:0.06, G:0.21, T:0.00
Consensus pattern (12 bp):
AAAAACAAAGGA
Found at i:182552240 original size:248 final size:233
Alignment explanation
Indices: 182551893--182552493 Score: 738
Period size: 248 Copynumber: 2.5 Consensus size: 233
182551883 TATATTAATT
* * * * *
182551893 ATTATCATATATTATTGTTTATTATTAGAGTGGTTAAAAATATGCTCTAAGTCTCTATA-TTATT
1 ATTATTATATATTATTGTTTATTATTATACTAGTT-AAAATATGCTCTAAGTCCCTATACTT-TT
* *
182551957 CGTACATTTGAAAGTTAACACTCGTACTATATTATATAATGTTATATAATATCATATAGTATACA
64 CGTACATTTGAAAGTTAAC-CTCCTACTATATTATATAATGTTATATCATATCATATAGTATACA
*
182552022 ATATATTAATAATTTATATATATTCATCAATAATTTAACATTATAATATCATGCAATACTATATC
128 ATATATTAATAATTTATATATA--CATCAATAATTAAACATTATAATATCATGCAATACTATATC
*
182552087 TTTTTTATAATTTATAATATAATAGTTATATATAATAATAGTTCATTACATATTA
191 ---TTT-T-A-TTAT-A-AT-ATA--TA-ATATAATAATAGTACATTACATATTA
* * * * * *
182552142 ATTATTATACATTATTGTTTATTATTATACTAGTTGAAATAGGTTTTAAGTCCCTATACTTTTCA
1 ATTATTATATATTATTGTTTATTATTATACTAGTTAAAATATGCTCTAAGTCCCTATACTTTTCG
* * * *
182552207 TACATTTGAATGTTAACCTTCCTACTATATTATATAATGCTATATCATATCATGTAGTATATAAT
66 TACATTTGAAAGTTAACC-TCCTACTATATTATATAATGTTATATCATATCATATAGTATACAAT
* * * *
182552272 GTATTAATAGTTTATATATACATCAATGATTAAACATTATAATATCATGTAATACTATATCTTTT
130 ATATTAATAATTTATATATACATCAATAATTAAACATTATAATATCATGCAATACTATATCTTTT
* *
182552337 ATTATAATCTATAATATAATAATAGTACATTATATATTA
195 ATTATAATATATAATATAATAATAGTACATTACATATTA
* * * *
182552376 ATTTTTATATATTATTGTTTATTATTATATTAGTTAAAATATGCTCTAAGTCCTTATACTTTTTG
1 ATTATTATATATTATTGTTTATTATTATACTAGTTAAAATATGCTCTAAGTCCCTATACTTTTCG
* *
182552441 TACATTTGAAAGTTAGCC-CCTTACTATATTATACAATGTTATATCATATCATA
66 TACATTTGAAAGTTAACCTCC-TACTATATTATATAATGTTATATCATATCATA
182552494 CTTTTTATTG
Statistics
Matches: 309, Mismatches: 40, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
232 2 0.01
233 29 0.09
234 95 0.31
235 2 0.01
237 2 0.01
238 2 0.01
239 1 0.00
240 4 0.01
241 1 0.00
242 1 0.00
243 3 0.01
246 38 0.12
247 1 0.00
248 96 0.31
249 32 0.10
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.46
Consensus pattern (233 bp):
ATTATTATATATTATTGTTTATTATTATACTAGTTAAAATATGCTCTAAGTCCCTATACTTTTCG
TACATTTGAAAGTTAACCTCCTACTATATTATATAATGTTATATCATATCATATAGTATACAATA
TATTAATAATTTATATATACATCAATAATTAAACATTATAATATCATGCAATACTATATCTTTTA
TTATAATATATAATATAATAATAGTACATTACATATTA
Found at i:182552385 original size:14 final size:15
Alignment explanation
Indices: 182552366--182552402 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
182552356 TAATAGTACA
182552366 TTATATATTAATT-T
1 TTATATATTAATTGT
182552380 TTATATATT-ATTGT
1 TTATATATTAATTGT
182552394 TTAT-TATTA
1 TTATATATTA
182552403 TATTAGTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 7 0.33
14 14 0.67
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (15 bp):
TTATATATTAATTGT
Found at i:182556065 original size:18 final size:19
Alignment explanation
Indices: 182556030--182556069 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
182556020 GCTTTCTACA
*
182556030 TATCTCTCTTATAATTTAT
1 TATCCCTCTTATAATTTAT
182556049 TATCCCTCTTA-AATTTAT
1 TATCCCTCTTATAATTTAT
182556067 TAT
1 TAT
182556070 GATGTTTCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.28, C:0.17, G:0.00, T:0.55
Consensus pattern (19 bp):
TATCCCTCTTATAATTTAT
Found at i:182558951 original size:2 final size:2
Alignment explanation
Indices: 182558944--182558982 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
182558934 ATCATACATC
182558944 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
182558983 ACAAGCTACA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:182561366 original size:2 final size:2
Alignment explanation
Indices: 182561361--182561387 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
182561351 CATATATAGG
182561361 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
182561388 GCCTTATGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:182562623 original size:48 final size:48
Alignment explanation
Indices: 182562551--182562656 Score: 158
Period size: 48 Copynumber: 2.2 Consensus size: 48
182562541 CAAGATAAAT
* * *
182562551 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
**
182562599 ATATGTATATGTGGTAAATTCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
182562647 ATGTGTATAT
1 ATATGTATAT
182562657 ATTGTGGCCG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.34, C:0.05, G:0.26, T:0.35
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:182562842 original size:37 final size:37
Alignment explanation
Indices: 182562790--182562861 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
182562780 GAAATATATT
* * *
182562790 CCGGGTAAGAGCCGATGGCTACGTGTGGAGATTATGC
1 CCGGGTAAGACCCGATGACTACGTATGGAGATTATGC
*
182562827 CCGGGTAAGACCCGATGACTACGTATGGGGATTAT
1 CCGGGTAAGACCCGATGACTACGTATGGAGATTAT
182562862 TCGAGCTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTATGGAGATTATGC
Found at i:182570645 original size:888 final size:889
Alignment explanation
Indices: 182568904--182570689 Score: 2392
Period size: 888 Copynumber: 2.0 Consensus size: 889
182568894 ATTTACCCAC
* * * * *
182568904 AAGGGCAAAACAATCATTTTACCCTATAGAGGTATTTCAATAATTTAAATAGTTTGGCCTAAACA
1 AAGGGCAAAACAACCATTTTACCCTACAGAGGTATTTCAATAATCTAAACAATTTGGCCTAAACA
* * *
182568969 TGCTTATCGGCCCATCCGAAGGTTTATAGTCACCCCGAGTGACTTTTACAACCCTAACGATCCTA
66 TGCTTATCGACCCATCCGAAGGTTTACAGTCACCCCGAGCGACTTTTACAACCCTAACGATCCTA
* * * *
182569034 TCACTAAAAATAGGCCCAAGGCCCATTGTTCGACCCAAATGGGCCCACACGCTCGTGCGGCCCAA
131 TCACTAAAAATAGGCCCAAGGCCCATTATTCAACCCAAATGGGCCCACACGCTCGTACGACCCAA
* * *** *
182569099 TTAGCCCAGGATTATCCACGGTTATGCATACTACACAGCCCTGTCCAAAGTTTGTCACATATAAA
196 TTAGCCCAAGATTAGCCACAACTATGCATACTACACAGCCCAGTCCAAAGTTTGTCACATATAAA
* * * *
182569164 AGATTTTATCTGTGCGGGACCCATGAGCCCATTGTGCCCACACGACCCACTTTAGCCCATTGAGG
261 AGATTTTATCTGTGAGGGACCCACGAGCCCATTGGGCCCACACAACCCACTTTAGCCCATTGAGG
* ** * * *
182569229 CCCAGAATGGTCTTTGCCATGTGTGCGACATGACAAGCCCCACTATTTTCCACTTAACAGTCAGA
326 CCCAGAATGGCCCATACCATGTGCGCGACATGACAAGCCCCACTATTTTCCACCTAACAGTCAGA
182569294 TTTACACAAGCGGGCTCACAGTTCCATTCGGCCCATTCGGCCCATTATGGCCTAAGCCCATGAAT
391 TTTACACAAGCGGGCTCACAG---C-TT----CCA-TC-GCCCATTATGGCCTAAGCCCATGAAT
* *
182569359 TCGTTCATGGCGGCCTTTTCCACCGTACACCCACGTTTCGTGGGCACGATTTACCGTGCGTGCGA
446 TCGTTCATGGCGGCCTTTTCCACCGTACACCCACGTTTCGTGGGCACGATTTACCATGCGTGCAA
* * ** * *
182569424 TCGTACGCTCTAAGCCCCTCCTTTCGACTTTTCTAATTCTCGATATTTTAGCATTTTGGCATTTG
511 TCGCACGCTCTAAGCCCCTCCTTTCGACTTTTCGAATTCAAGATATTTCAGCATTTTGACATTTG
* *
182569489 CCGACCTATGGTTAAATTAATGTATGTGGATTCACACACTCTTTCGGCTTTTGACCGATATCAAA
576 CCAACCTATGGTCAAATTAATGTATGTGGATTCACACACTCTTTCGGCTTTTGACCGATATCAAA
* * * *
182569554 TACGATACTACTACACACTTGATGCGATTTGCTGTAAAACACTATCGAGCACTCTGGGACCTGCA
641 TACGATACTACTACACACATGATGCGATTTGCTGTAAAACACTATCAAGCACTCCGGAACCTGCA
* * *
182569619 GATCCGAACAAGATAGTTCACTACTCCATAATTCATCGCGGATAATTCTGTAAAAACCTAATACC
706 GATCCGAACAAGATAGTTCACTACTCCACAATTCATCGCGGAAAATTCTGTAAAAACCCAATACC
*
182569684 AACATCAATTCACATTTCATATCCAAGGGAAAAAGAAAAACTTTCCTTTAACACCACCAAAATAT
771 AACATCAATTCACATTTCATACCCAAGGGAAAAAGAAAAACTTTCCTTTAACACCACCAAAATAT
182569749 AACCACTTTACCTACCAACCGCATAACAGTAGAGTCGCACTACTCCAACGCTAT
836 AACCACTTTACCTACCAACCGCATAACAGTAGAGTCGCACTACTCCAACGCTAT
* ***
182569803 AAGGGCAAAACAACCATTTTACCCTACAGGGGTATTTTGGTAATCTAAACAATTTGGCCTAAACA
1 AAGGGCAAAACAACCATTTTACCCTACAGAGGTATTTCAATAATCTAAACAATTTGGCCTAAACA
* * * *
182569868 TGCTTATCGACTCATCTGAAGGTTTACAGTCACCTCGAGCGACTTTTACACCCCTAAC-AGTCCT
66 TGCTTATCGACCCATCCGAAGGTTTACAGTCACCCCGAGCGACTTTTACAACCCTAACGA-TCCT
* * * * *
182569932 ATCAGTGAAAAT-GAGCCCAAGGCCCATTATTCAACCCAAATGGGCCTATACGCTCGTATGACCC
130 ATCACTAAAAATAG-GCCCAAGGCCCATTATTCAACCCAAATGGGCCCACACGCTCGTACGACCC
182569996 AATTAGCCCAAGATTAGCCACAACTATGCATACTACACAACACAGCCCAGTCCAAAGTTTGTCAC
194 AATTAGCCCAAGATTAGCCACAACTATGCATACT-----ACACAGCCCAGTCCAAAGTTTGTCAC
* ** * ** * *
182570061 TTATCGAGGATTTTAT-TCGTGAGGGGTCCACGAGTCCATTGGGCCCACATAACCCACTTTAGCC
254 ATATAAAAGATTTTATCT-GTGAGGGACCCACGAGCCCATTGGGCCCACACAACCCACTTTAGCC
*
182570125 TATTGAGGCCCAGAATGGCCCATACCATGTGCGCGACATGACAAGCCCCACTATTTTCCACCTAA
318 CATTGAGGCCCAGAATGGCCCATACCATGTGCGCGACATGACAAGCCCCACTATTTTCCACCTAA
*
182570190 GAGTCAGATTTACACAAGCGGGC-C-C-G-TT-C-T-GCCCATTATGGCCTAAGCCCATGAATTC
383 CAGTCAGATTTACACAAGCGGGCTCACAGCTTCCATCGCCCATTATGGCCTAAGCCCATGAATTC
* * * * *
182570248 GTTCATGGCTGCCTTTTCCGCTGTACACCCACGTTTCGTGGGCTC-AGTTTACCATTCGTGCAAT
448 GTTCATGGCGGCCTTTTCCACCGTACACCCACGTTTCGTGGGCACGA-TTTACCATGCGTGCAAT
* * * ** * * * *
182570312 TGCACGCTCTCAGCCCCTCCTTTTGACTTTTCGGCTTCAA-AGTATTTCGGTATTTTGATATTTT
512 CGCACGCTCTAAGCCCCTCCTTTCGACTTTTCGAATTCAAGA-TATTTCAGCATTTTGACATTTG
* * *
182570376 CTAACCTATGGTCAAATTAATGTGTGTGGATTCACACACTCTTTCGGCTTTTGACTGATTATCAA
576 CCAACCTATGGTCAAATTAATGTATGTGGATTCACACACTCTTTCGGCTTTTGACCGA-TATCAA
* *
182570441 ATACGGTACTACTACACACATGATGCGATTTGCTGTAAAACACTATTAAGCACTCCGGAACCTGC
640 ATACGATACTACTACACACATGATGCGATTTGCTGTAAAACACTATCAAGCACTCCGGAACCTGC
* * * * *
182570506 AGATCCGAACAAGATAGTTCATTACTCCACAATTC-GCTGTGGAAAATTTTGTAAAGACCCAATA
705 AGATCCGAACAAGATAGTTCACTACTCCACAATTCATC-GCGGAAAATTCTGTAAAAACCCAATA
* * *
182570570 CCAACATCAATTCACATTTCATACCCAAGGGAAAAAGAAAAACTTTCTTTTAACAGCACCAAAGT
769 CCAACATCAATTCACATTTCATACCCAAGGGAAAAAGAAAAACTTTCCTTTAACACCACCAAAAT
* * *
182570635 ATAGCCACTTTACCTACCAGCCGCGTAACAGTAGAGTCGCACTACTCCAACGCTA
834 ATAACCACTTTACCTACCAACCGCATAACAGTAGAGTCGCACTACTCCAACGCTA
182570690 ACTGAGTCGT
Statistics
Matches: 776, Mismatches: 99, Indels: 35
0.85 0.11 0.04
Matches are distributed among these distances:
886 2 0.00
887 184 0.24
888 232 0.30
889 1 0.00
891 1 0.00
896 2 0.00
898 2 0.00
899 193 0.25
901 1 0.00
902 1 0.00
903 2 0.00
904 155 0.20
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.27
Consensus pattern (889 bp):
AAGGGCAAAACAACCATTTTACCCTACAGAGGTATTTCAATAATCTAAACAATTTGGCCTAAACA
TGCTTATCGACCCATCCGAAGGTTTACAGTCACCCCGAGCGACTTTTACAACCCTAACGATCCTA
TCACTAAAAATAGGCCCAAGGCCCATTATTCAACCCAAATGGGCCCACACGCTCGTACGACCCAA
TTAGCCCAAGATTAGCCACAACTATGCATACTACACAGCCCAGTCCAAAGTTTGTCACATATAAA
AGATTTTATCTGTGAGGGACCCACGAGCCCATTGGGCCCACACAACCCACTTTAGCCCATTGAGG
CCCAGAATGGCCCATACCATGTGCGCGACATGACAAGCCCCACTATTTTCCACCTAACAGTCAGA
TTTACACAAGCGGGCTCACAGCTTCCATCGCCCATTATGGCCTAAGCCCATGAATTCGTTCATGG
CGGCCTTTTCCACCGTACACCCACGTTTCGTGGGCACGATTTACCATGCGTGCAATCGCACGCTC
TAAGCCCCTCCTTTCGACTTTTCGAATTCAAGATATTTCAGCATTTTGACATTTGCCAACCTATG
GTCAAATTAATGTATGTGGATTCACACACTCTTTCGGCTTTTGACCGATATCAAATACGATACTA
CTACACACATGATGCGATTTGCTGTAAAACACTATCAAGCACTCCGGAACCTGCAGATCCGAACA
AGATAGTTCACTACTCCACAATTCATCGCGGAAAATTCTGTAAAAACCCAATACCAACATCAATT
CACATTTCATACCCAAGGGAAAAAGAAAAACTTTCCTTTAACACCACCAAAATATAACCACTTTA
CCTACCAACCGCATAACAGTAGAGTCGCACTACTCCAACGCTAT
Found at i:182571198 original size:24 final size:24
Alignment explanation
Indices: 182571171--182571246 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 24
182571161 CCATATTTTT
182571171 CTCCTTAATTCTCTCCATAAATCA
1 CTCCTTAATTCTCTCCATAAATCA
* * * *
182571195 CTCCTTGATTTTATCC-TAATATCT
1 CTCCTTAATTCTCTCCATAA-ATCA
* * *
182571219 CTCCATAATACACTCCATAAATCA
1 CTCCTTAATTCTCTCCATAAATCA
182571243 CTCC
1 CTCC
182571247 AACCTCCCAT
Statistics
Matches: 39, Mismatches: 11, Indels: 4
0.72 0.20 0.07
Matches are distributed among these distances:
23 3 0.08
24 33 0.85
25 3 0.08
ACGTcount: A:0.29, C:0.33, G:0.01, T:0.37
Consensus pattern (24 bp):
CTCCTTAATTCTCTCCATAAATCA
Found at i:182574637 original size:40 final size:40
Alignment explanation
Indices: 182574508--182574638 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
182574498 TATGCTGGAA
* * *
182574508 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * *
182574548 GCTATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTT
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
182574588 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
*
182574628 ATTAAATCCGG
1 ATTATATCCGG
182574639 TTATATTCCA
Statistics
Matches: 74, Mismatches: 16, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:182576899 original size:40 final size:40
Alignment explanation
Indices: 182576839--182577041 Score: 286
Period size: 40 Copynumber: 5.1 Consensus size: 40
182576829 CGGAATTTAG
* *
182576839 CCGGATATAACCAC-AGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
182576878 CCGGGTAT-AGCAACTCGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
*
182576918 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* *
182576958 CCGGATATAATCACTAGCATAAATGCCTTCAGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAAC
*
182576998 CCGGATATAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAAC
182577038 CCGG
1 CCGG
182577042 GTATCATTCA
Statistics
Matches: 151, Mismatches: 9, Indels: 7
0.90 0.05 0.04
Matches are distributed among these distances:
38 2 0.01
39 9 0.06
40 138 0.91
41 2 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.24
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:182580303 original size:8 final size:8
Alignment explanation
Indices: 182580290--182580324 Score: 70
Period size: 8 Copynumber: 4.4 Consensus size: 8
182580280 ATGTGAGAGG
182580290 ATTCAAAA
1 ATTCAAAA
182580298 ATTCAAAA
1 ATTCAAAA
182580306 ATTCAAAA
1 ATTCAAAA
182580314 ATTCAAAA
1 ATTCAAAA
182580322 ATT
1 ATT
182580325 TTCCCGTTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.60, C:0.11, G:0.00, T:0.29
Consensus pattern (8 bp):
ATTCAAAA
Found at i:182581178 original size:22 final size:22
Alignment explanation
Indices: 182581143--182581187 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
182581133 AACAGTAAAT
182581143 ATTTGTAGACAAA-CTGCTAGTA
1 ATTTGTAGACAAACCT-CTAGTA
**
182581165 ATTTGTAGTTAAACCTCTAGTA
1 ATTTGTAGACAAACCTCTAGTA
182581187 A
1 A
182581188 AAAGTTTGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.36
Consensus pattern (22 bp):
ATTTGTAGACAAACCTCTAGTA
Found at i:182583967 original size:28 final size:28
Alignment explanation
Indices: 182583936--182584014 Score: 131
Period size: 28 Copynumber: 2.8 Consensus size: 28
182583926 GACATCAAAT
182583936 ATGGCACTTAGTGTGCGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
182583964 ATGGCACATAGTGTGCGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
182583992 ATGACACTTAGTGTGGGAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
182584015 CGAATGATTC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:182587720 original size:40 final size:40
Alignment explanation
Indices: 182587654--182587820 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
182587644 AAATTGAATG
* * *
182587654 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
182587693 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
182587733 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
182587773 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
182587813 ATATCCGG
1 ATATCCGG
182587821 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:182595718 original size:40 final size:40
Alignment explanation
Indices: 182595652--182595818 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
182595642 AAATTGAATG
* * *
182595652 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
182595691 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
182595731 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
182595771 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
182595811 ATATCCGG
1 ATATCCGG
182595819 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:182599499 original size:15 final size:16
Alignment explanation
Indices: 182599473--182599535 Score: 78
Period size: 15 Copynumber: 4.1 Consensus size: 16
182599463 CAAGGAAACC
182599473 GAATAAAGAAATCCAA
1 GAATAAAGAAATCCAA
*
182599489 G-ATAGAGAAATCC-A
1 GAATAAAGAAATCCAA
182599503 GAATAAAGAAATCC-A
1 GAATAAAGAAATCCAA
* *
182599518 GAATAAAGGAACCCAA
1 GAATAAAGAAATCCAA
182599534 GA
1 GA
182599536 TACGATACTA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
14 2 0.05
15 35 0.85
16 4 0.10
ACGTcount: A:0.57, C:0.14, G:0.17, T:0.11
Consensus pattern (16 bp):
GAATAAAGAAATCCAA
Found at i:182602508 original size:46 final size:45
Alignment explanation
Indices: 182602447--182602620 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 45
182602437 TGTAACCCGC
* * *
182602447 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCAT
* *
182602493 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCAT
* * * *
182602543 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTC-GACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCAT
*
182602585 CCATAAGTGAACTCGGACTCAACTCAAGGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
182602621 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 13, Indels: 18
0.77 0.09 0.13
Matches are distributed among these distances:
42 6 0.06
43 2 0.02
44 2 0.02
45 25 0.24
46 34 0.32
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCAT
Found at i:182602617 original size:92 final size:93
Alignment explanation
Indices: 182602454--182602624 Score: 272
Period size: 92 Copynumber: 1.8 Consensus size: 93
182602444 CGCCCATAAG
* * *
182602454 CGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
182602519 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
182602547 CGAACTCGGACTCAACTCAACGAGTTC-GACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
182602611 AGGAGTTCGGATGC
66 ACGAGTTCGGATGC
182602625 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
92 46 0.65
93 25 0.35
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:182607047 original size:27 final size:26
Alignment explanation
Indices: 182607024--182607117 Score: 127
Period size: 27 Copynumber: 3.5 Consensus size: 26
182607014 CTATGCCCCA
182607024 ATTATCTGA-TCTGGTGGCTCTGCCAC
1 ATTATCT-ATTCTGGTGGCTCTGCCAC
182607050 ATATATCTATTCTGGTGGCTCTGCCAC
1 AT-TATCTATTCTGGTGGCTCTGCCAC
* *
182607077 AATTATCTATTCTGGTGACTCTGTCAC
1 -ATTATCTATTCTGGTGGCTCTGCCAC
*
182607104 ATTATCTGTTCTGG
1 ATTATCTATTCTGG
182607118 CAGCCATGCT
Statistics
Matches: 62, Mismatches: 3, Indels: 6
0.87 0.04 0.08
Matches are distributed among these distances:
26 16 0.26
27 44 0.71
28 2 0.03
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.39
Consensus pattern (26 bp):
ATTATCTATTCTGGTGGCTCTGCCAC
Found at i:182607091 original size:54 final size:53
Alignment explanation
Indices: 182607007--182607126 Score: 143
Period size: 54 Copynumber: 2.2 Consensus size: 53
182606997 AGGAAGCGTC
* *
182607007 CTGGTAGCTATGCCCCAATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTAGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACAT-TATCTATT
* * * *
182607061 CTGGTGGCTCTGCCACAATTATCT-ATTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTAGCTATGCCACAATTATCTGA-TCTGGTGACTCTGCCACATTATCTATT
* *
182607114 CTGGCAGCCATGC
1 CTGGTAGCTATGC
182607127 TGCATATTTC
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
53 17 0.31
54 38 0.69
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (53 bp):
CTGGTAGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTATT
Found at i:182609963 original size:40 final size:40
Alignment explanation
Indices: 182609908--182610009 Score: 132
Period size: 40 Copynumber: 2.5 Consensus size: 40
182609898 TTATATACAT
* * **
182609908 AGGGGCACGTATGTGCACTCAGGGGTACCAAAGTGTAAAC
1 AGGGGCACGTATGTGCATTCAGGGGCACCAAAGTACAAAC
* *
182609948 AGGGGCACGTATGTGCATTCAGGGGCACCGAGGTACAAAC
1 AGGGGCACGTATGTGCATTCAGGGGCACCAAAGTACAAAC
* *
182609988 AAGGGCACGCATGTGCATTCAG
1 AGGGGCACGTATGTGCATTCAG
182610010 ACAATAATTA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.28, C:0.22, G:0.33, T:0.17
Consensus pattern (40 bp):
AGGGGCACGTATGTGCATTCAGGGGCACCAAAGTACAAAC
Found at i:182609970 original size:20 final size:20
Alignment explanation
Indices: 182609908--182609975 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
182609898 TTATATACAT
*
182609908 AGGGGCACGTATGTGCACTC
1 AGGGGCACGTATGTGCAATC
* ** * * *
182609928 AGGGGTACCAAAGTGTAAAC
1 AGGGGCACGTATGTGCAATC
*
182609948 AGGGGCACGTATGTGCATTC
1 AGGGGCACGTATGTGCAATC
182609968 AGGGGCAC
1 AGGGGCAC
182609976 CGAGGTACAA
Statistics
Matches: 34, Mismatches: 14, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.26, C:0.21, G:0.35, T:0.18
Consensus pattern (20 bp):
AGGGGCACGTATGTGCAATC
Found at i:182613829 original size:40 final size:40
Alignment explanation
Indices: 182613784--182613950 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
182613774 CGGAATATAA
182613784 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
182613824 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
182613864 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
182613904 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
182613943 CCGGATAT
1 CCGGATAT
182613951 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:182621821 original size:40 final size:40
Alignment explanation
Indices: 182621776--182621942 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
182621766 CGGAATATAA
182621776 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
182621816 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
182621856 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
182621896 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
182621935 CCGGATAT
1 CCGGATAT
182621943 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:182625941 original size:68 final size:70
Alignment explanation
Indices: 182625869--182626066 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
182625859 ACACCCTGTA
* * * *
182625869 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
182625931 ATAAAT
65 ATAAAT
*
182625937 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
182626002 ATAAAT
65 ATAAAT
*
182626008 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
182626067 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:182625980 original size:41 final size:41
Alignment explanation
Indices: 182625935--182626052 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
182625925 TGAAAGATAA
182625935 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
182625976 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
182626006 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
182626047 ATGTAG
1 ATGTAG
182626053 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:182625992 original size:71 final size:71
Alignment explanation
Indices: 182625903--182626066 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
182625893 GAGATGTATC
182625903 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
182625968 AGGACA
66 AGGACA
182625974 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
182626039 AGGACA
66 AGGACA
182626045 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
182626067 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:182633502 original size:68 final size:70
Alignment explanation
Indices: 182633430--182633627 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
182633420 ACACCCTGTA
* * * *
182633430 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
182633492 ATAAAT
65 ATAAAT
*
182633498 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
182633563 ATAAAT
65 ATAAAT
*
182633569 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
182633628 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:182633541 original size:41 final size:41
Alignment explanation
Indices: 182633496--182633613 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
182633486 TGAAAGATAA
182633496 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
182633537 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
182633567 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
182633608 ATGTAG
1 ATGTAG
182633614 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:182633553 original size:71 final size:71
Alignment explanation
Indices: 182633464--182633627 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
182633454 GAGATGTATC
182633464 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
182633529 AGGACA
66 AGGACA
182633535 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
182633600 AGGACA
66 AGGACA
182633606 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
182633628 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:182636142 original size:29 final size:27
Alignment explanation
Indices: 182636101--182636174 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 27
182636091 ATACTAGGGA
182636101 CCTTTTTATTTTATTTT-TTTCATTAGAT
1 CCTTTTTATTTTATTTTATTT-ATT-GAT
**
182636129 CCTTTTTCATTTTATTTCTATTTATTTTT
1 CCTTTTT-ATTTTATTT-TATTTATTGAT
182636158 CCTTTTTATTTTATTTT
1 CCTTTTTATTTTATTTT
182636175 GTTTTCTTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
27 1 0.02
28 16 0.39
29 17 0.41
30 4 0.10
31 3 0.07
ACGTcount: A:0.15, C:0.12, G:0.01, T:0.72
Consensus pattern (27 bp):
CCTTTTTATTTTATTTTATTTATTGAT
Found at i:182636156 original size:22 final size:22
Alignment explanation
Indices: 182636131--182636173 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
182636121 CATTAGATCC
182636131 TTTTT-CATTTTATTTCTATTTA
1 TTTTTCCATTTTATTT-TATTTA
*
182636153 TTTTTCCTTTTTATTTTATTT
1 TTTTTCCATTTTATTTTATTT
182636174 TGTTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTTTCCATTTTATTTTATTTA
Found at i:182638541 original size:22 final size:21
Alignment explanation
Indices: 182638506--182638563 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
182638496 TAAAGGTATC
* *
182638506 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
182638527 TACAAAATCATATCTTTTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
182638550 TGCATATCATATCT
1 TACAAATCATATCT
182638564 AAGATTGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:182638568 original size:19 final size:19
Alignment explanation
Indices: 182638544--182638649 Score: 159
Period size: 19 Copynumber: 5.8 Consensus size: 19
182638534 TCATATCTTT
182638544 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
182638563 TAAGATTG--TATCATATC
1 TAAGATTGCATATCATATC
182638580 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
*
182638599 TAAGATTGCA-ATCATTTC
1 TAAGATTGCATATCATATC
182638617 TAAGATTG--TATCATATC
1 TAAGATTGCATATCATATC
*
182638634 TAAGATTTCATATCAT
1 TAAGATTGCATATCAT
182638650 TGAAGATTAT
Statistics
Matches: 79, Mismatches: 3, Indels: 10
0.86 0.03 0.11
Matches are distributed among these distances:
17 31 0.39
18 15 0.19
19 33 0.42
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:182638593 original size:14 final size:15
Alignment explanation
Indices: 182638556--182638647 Score: 69
Period size: 17 Copynumber: 5.5 Consensus size: 15
182638546 AGATTGCATA
182638556 TCATATCTAAGATTG
1 TCATATCTAAGATTG
182638571 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
182638588 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
*
182638607 CAATCATTTCTAAGATTG
1 ---TCATATCTAAGATTG
182638625 TATCATATCTAAGATT-
1 --TCATATCTAAGATTG
182638641 TCATATC
1 TCATATC
182638648 ATTGAAGATT
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
14 7 0.10
17 29 0.43
18 15 0.22
19 17 0.25
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:182638619 original size:54 final size:55
Alignment explanation
Indices: 182638544--182638649 Score: 187
Period size: 54 Copynumber: 1.9 Consensus size: 55
182638534 TCATATCTTT
182638544 TAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTGCATATCATATC
1 TAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTGCATATCATATC
* *
182638599 TAAGATTGCA-ATCATTTCTAAGATTGTATCATATCTAAGATTTCATATCAT
1 TAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTGCATATCAT
182638650 TGAAGATTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
54 39 0.80
55 10 0.20
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (55 bp):
TAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTGCATATCATATC
Found at i:182639209 original size:87 final size:86
Alignment explanation
Indices: 182639045--182639209 Score: 190
Period size: 87 Copynumber: 1.9 Consensus size: 86
182639035 ACAATACAGA
* *
182639045 GATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTACTGTGTCTTCG
1 GATGCCAAATCATCTTAGATCTGCTTCA-CGTAAACACGTGAAAGCCAAATCTACTATGTCTTCA
*
182639110 ATTTGCTCCTTGTGAACACAAG
65 ATCTGCTCCTTGTGAACACAAG
* * * * *
182639132 GATGCCAAATCATCTTGGATCTGCTTCA-GTAAAATCATC-TGAAGGTCAGATCTGCTATGTCTT
1 GATGCCAAATCATCTTAGATCTGCTTCACGT-AAA-CA-CGTGAAAGCCAAATCTACTATGTCTT
* *
182639195 TAATCTGCTTCTTGT
63 CAATCTGCTCCTTGT
182639210 AAACTAATGA
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
85 2 0.03
86 3 0.05
87 59 0.91
88 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (86 bp):
GATGCCAAATCATCTTAGATCTGCTTCACGTAAACACGTGAAAGCCAAATCTACTATGTCTTCAA
TCTGCTCCTTGTGAACACAAG
Found at i:182639399 original size:261 final size:256
Alignment explanation
Indices: 182638929--182639447 Score: 722
Period size: 261 Copynumber: 2.0 Consensus size: 256
182638919 TCGAATCATG
*
182638929 GTCTTCAATCTGCTCATTGGAAACTCAAGACTGTCATGTTGATATCTTAGATCTGCTCTCCGTCG
1 GTCTTCAATCTGCTCATTGGAAACTCAAGACTGTCATGTTGATATCTTAGATCTGCTCTCCGCCG
* * *
182638994 AACACAGAGACGCCAAATCTGCTTCTTCGATTTATTTTCTGACAATACAGAGATGCCAAATCATC
66 AACACAGAGACGCCAAATCTGCTTCTTCAATTTATTCTCTAACAATACAGAGATGCCAAATCATC
* * * * *
182639059 TTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTACTGTGTCTTCGATTTGCTCCTTGTG
131 TTAGATCTGCTTCAGCATAAACACGCGAAAACCAAATCTACTATGCCTTCGATTTGCTCCTTGTG
* *
182639124 AACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTAAAATCATCTGAAGGTCAGATCTGCTA
196 AACACAAGGATGCCAAACCATCTTGGATATGCTTCAG-----TCATCTGAAGGTCAGATCTGCTA
182639189 T
256 T
* * * * *
182639190 GTCTTTAATCTGCTTC-TTGTAAACT-AATGACTGTCCTTTTGATATCTTCGATCTGCTCTCCGC
1 GTCTTCAATCTGC-TCATTGGAAACTCAA-GACTGTCATGTTGATATCTTAGATCTGCTCTCCGC
* * *
182639253 CGAATACAGAGACGCCAAATCTGTTTCTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCA
64 CGAACACAGAGACGCCAAATCTGCTTCTTCAATTTATTCTCTAACAATACAGAGATGCCAAATCA
* * *
182639318 TCTTAGATTTGCTTCAGCATAAGCACGCGAAAACCAAATC-AGCTATGCCTTCGATTTGTTCCTT
129 TCTTAGATCTGCTTCAGCATAAACACGCGAAAACCAAATCTA-CTATGCCTTCGATTTGCTCCTT
*
182639382 GT-AAGCACAAGGATGCCAAACCATCTTGGATATGCTTCAGTCATCTGAAGGTTAGATCTGCTAT
193 GTGAA-CACAAGGATGCCAAACCATCTTGGATATGCTTCAGTCATCTGAAGGTCAGATCTGCTAT
182639446 GT
1 GT
182639448 ATCTGCTCTC
Statistics
Matches: 231, Mismatches: 23, Indels: 13
0.87 0.09 0.05
Matches are distributed among these distances:
256 25 0.11
260 5 0.02
261 199 0.86
262 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (256 bp):
GTCTTCAATCTGCTCATTGGAAACTCAAGACTGTCATGTTGATATCTTAGATCTGCTCTCCGCCG
AACACAGAGACGCCAAATCTGCTTCTTCAATTTATTCTCTAACAATACAGAGATGCCAAATCATC
TTAGATCTGCTTCAGCATAAACACGCGAAAACCAAATCTACTATGCCTTCGATTTGCTCCTTGTG
AACACAAGGATGCCAAACCATCTTGGATATGCTTCAGTCATCTGAAGGTCAGATCTGCTAT
Found at i:182639733 original size:205 final size:205
Alignment explanation
Indices: 182639279--182640441 Score: 1933
Period size: 205 Copynumber: 5.7 Consensus size: 205
182639269 AAATCTGTTT
* * *
182639279 CTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
182639344 GCGAAAACCAAATCAGCTATGCCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
182639409 GGATATGCTTCAG--T---CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCATCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
182639469 AGATGCCAGA
196 AGATGCCAGA
* * *
182639479 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
182639544 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTTCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
182639609 GGATTTGATTCAGTATAAACATCTGAAGGTTACATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
*
182639674 GGATGCCAGA
196 AGATGCCAGA
* * *
182639684 CTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
182639749 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
182639814 GGATCTGCTTCAGTATAAACATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
182639879 AGATGCCAGA
196 AGATGCCAGA
*
182639889 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
182639954 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
182640019 GGATCTGCTTCAGTATAAACATCTGAAGCTTAGATCTGCTATGTATCTGCTCTCCGCCAAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
182640084 AGATGCCAGA
196 AGATGCCAGA
* * *
182640094 CTTCGATTTGTTCT-TGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAT
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
182640158 GTGAAAGCCAAATCAGCTATCTCTTCGATTTGTTCCTTGTAAGCATAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
182640223 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTATGTATCTGCTCTCCGTTGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
*
182640288 AGATGCCAAA
196 AGATGCCAGA
**
182640298 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATTGTCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
182640363 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
182640428 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
182640442 CCAGATCTGC
Statistics
Matches: 903, Mismatches: 53, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
200 132 0.15
202 1 0.00
204 194 0.21
205 568 0.63
206 8 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
AGATGCCAGA
Found at i:182640309 original size:409 final size:410
Alignment explanation
Indices: 182639279--182640441 Score: 1944
Period size: 409 Copynumber: 2.8 Consensus size: 410
182639269 AAATCTGTTT
*
182639279 CTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAGCAC
1 CTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
182639344 GCGAAAACCAAATCAGCTATGC-CTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
66 GTGAAAGCCAAATCAGCTAT-CTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
* *
182639408 TGGATATGCTTCAG--T---CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCATCGAAATG
130 TGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATG
*
182639468 GAGATGCCAGACTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTC
195 GAGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTC
* * * *
182639533 ATCATAAGCACATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTTCTTGTAAGCACAAGGATGC
260 AGCGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGC
* * *
182639598 CAAACCATCTTGGATTTGATTCAGTATAAACATCTGAAGGTTACATCTGCTATGTATCTGCTCTC
325 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGCTTACATCTGCTATGTATCTGCTCTC
* * *
182639663 CGTCGAAATGGGGATGCCAGA
390 CGCCAAAATGGAGATGCCAGA
*
182639684 CTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
*
182639749 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATCTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
182639814 GGATCTGCTTCAGTATAAACATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
182639879 AGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCA
196 AGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCA
*
182639944 GCGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCC
261 GCGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCC
*
182640009 AAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGCTTAGATCTGCTATGTATCTGCTCTCC
326 AAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGCTTACATCTGCTATGTATCTGCTCTCC
182640074 GCCAAAATGGAGATGCCAGA
391 GCCAAAATGGAGATGCCAGA
* * * * *
182640094 CTTCGATTTGTTCT-TGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAT
1 CTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
*
182640158 GTGAAAGCCAAATCAGCTATCTCTTCGATTTGTTCCTTGTAAGCATAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATCTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
182640223 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTATGTATCTGCTCTCCGTTGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
* **
182640288 AGATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATTGTCTTAGATTTGCTTCA
196 AGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCA
* * *
182640353 GCGTAAGCACGCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCC
261 GCGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCC
182640418 AAACCATCTTGGATCTTGCTTCAG
326 AAACCATCTTGGATC-TGCTTCAG
182640442 CCAGATCTGC
Statistics
Matches: 712, Mismatches: 39, Indels: 9
0.94 0.05 0.01
Matches are distributed among these distances:
405 136 0.19
407 1 0.00
409 308 0.43
410 267 0.38
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (410 bp):
CTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATCTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
AGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCA
GCGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCC
AAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGCTTACATCTGCTATGTATCTGCTCTCC
GCCAAAATGGAGATGCCAGA
Found at i:182641397 original size:11 final size:11
Alignment explanation
Indices: 182641381--182641442 Score: 72
Period size: 11 Copynumber: 5.4 Consensus size: 11
182641371 GGCCTCTCCA
182641381 TTTTTCTTTTT
1 TTTTTCTTTTT
182641392 TTTTTCTTTTT
1 TTTTTCTTTTT
182641403 ATATTTT-TTTTCT
1 -T-TTTTCTTTT-T
*
182641416 CTTTTTCTTTTC
1 -TTTTTCTTTTT
182641428 TTTTTCTTTTT
1 TTTTTCTTTTT
182641439 TTTT
1 TTTT
182641443 GAAATAGAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
11 25 0.57
12 9 0.20
13 10 0.23
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:182641409 original size:17 final size:17
Alignment explanation
Indices: 182641389--182641439 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
182641379 CATTTTTCTT
182641389 TTTTTTTTCTTTTTAT-A
1 TTTTTTTTCTTTTT-TCA
*
182641406 TTTTTTTTCTCTTTTTCT
1 TTTTTTTTCT-TTTTTCA
182641424 TTTCTTTTTCTTTTTT
1 TTT-TTTTTCTTTTTT
182641440 TTTGAAATAG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 11 0.37
18 12 0.40
19 7 0.23
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTTTTTCTTTTTTCA
Found at i:182641411 original size:19 final size:18
Alignment explanation
Indices: 182641381--182641439 Score: 66
Period size: 17 Copynumber: 3.3 Consensus size: 18
182641371 GGCCTCTCCA
*
182641381 TTTTTCTTTTTTTTTTC-
1 TTTTTATTTTTTTTTTCT
*
182641398 TTTTTATATTTTTTTTCT
1 TTTTTATTTTTTTTTTCT
* *
182641416 CTTTTTCTTTTCTTTTTCT
1 -TTTTTATTTTTTTTTTCT
182641435 TTTTT
1 TTTTT
182641440 TTTGAAATAG
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
17 15 0.43
18 5 0.14
19 15 0.43
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTTTATTTTTTTTTTCT
Found at i:182641421 original size:30 final size:28
Alignment explanation
Indices: 182641381--182641442 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 28
182641371 GGCCTCTCCA
*
182641381 TTTTTCTTTTTTTTTTCTTTTTATATTTT
1 TTTTTCTTTTTCTTTTCTTTTTAT-TTTT
*
182641410 TTTTCTCTTTTTCTTTTCTTTTTCTTTTT
1 TTTT-TCTTTTTCTTTTCTTTTTATTTTT
182641439 TTTT
1 TTTT
182641443 GAAATAGAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 12 0.40
30 18 0.60
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.85
Consensus pattern (28 bp):
TTTTTCTTTTTCTTTTCTTTTTATTTTT
Found at i:182641440 original size:19 final size:18
Alignment explanation
Indices: 182641381--182641440 Score: 68
Period size: 19 Copynumber: 3.3 Consensus size: 18
182641371 GGCCTCTCCA
182641381 TTTTTCTTTTTTTTTTCTT
1 TTTTTC-TTTTTTTTTCTT
* * *
182641400 TTTAT-ATTTTTTTTCTC
1 TTTTTCTTTTTTTTTCTT
182641417 TTTTTCTTTTCTTTTTCTT
1 TTTTTCTTTT-TTTTTCTT
182641436 TTTTT
1 TTTTT
182641441 TTGAAATAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
17 14 0.42
18 3 0.09
19 16 0.48
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTTTCTTTTTTTTTCTT
Found at i:182648214 original size:23 final size:21
Alignment explanation
Indices: 182648184--182648227 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
182648174 AAATTAAATC
182648184 TCTAAGATTACAAAATCATATCT
1 TCTAAGATT-C-AAATCATATCT
*
182648207 TCTAAGATTCATATCATATCT
1 TCTAAGATTCAAATCATATCT
182648228 AAGATTGCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 10 0.50
22 1 0.05
23 9 0.45
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTAAGATTCAAATCATATCT
Found at i:182648230 original size:18 final size:18
Alignment explanation
Indices: 182648199--182648319 Score: 108
Period size: 18 Copynumber: 6.5 Consensus size: 18
182648189 GATTACAAAA
182648199 TCATATC-T-TCTAAGAT
1 TCATATCATATCTAAGAT
182648215 TCATATCATATCTAAGAT
1 TCATATCATATCTAAGAT
182648233 TGCA-ATCATATCTAAGATTGT
1 T-CATATCATATCTAAGA---T
182648254 ATCATATATCATATCTAAGAT
1 -TC--ATATCATATCTAAGAT
*
182648275 TGCA-ATCATTTCTAAGAT
1 T-CATATCATATCTAAGAT
*
182648293 T-GTATCATATCTAAGAT
1 TCATATCATATCTAAGAT
182648310 TGCATATCAT
1 T-CATATCAT
182648320 TGAAGATTAT
Statistics
Matches: 87, Mismatches: 4, Indels: 25
0.75 0.03 0.22
Matches are distributed among these distances:
16 7 0.08
17 15 0.17
18 36 0.41
19 9 0.10
20 1 0.01
21 4 0.05
22 1 0.01
23 1 0.01
24 13 0.15
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.40
Consensus pattern (18 bp):
TCATATCATATCTAAGAT
Found at i:182648249 original size:59 final size:59
Alignment explanation
Indices: 182648184--182648310 Score: 152
Period size: 59 Copynumber: 2.2 Consensus size: 59
182648174 AAATTAAATC
182648184 TCTAAGATTACAAAATCATATC-T-TCTAAGATT-CATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTACAAAAT-ATATCATATCTAAGATTGCA-ATCATATCTAAGATTG-AATCATA
** ** * *
182648243 TCTAAGATTGTATCATATATCATATCTAAGATTGCAATCATTTCTAAGATTGTATCATA
1 TCTAAGATTACAAAATATATCATATCTAAGATTGCAATCATATCTAAGATTGAATCATA
182648302 TCTAAGATT
1 TCTAAGATT
182648311 GCATATCATT
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
58 5 0.08
59 28 0.47
60 24 0.41
61 2 0.03
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.39
Consensus pattern (59 bp):
TCTAAGATTACAAAATATATCATATCTAAGATTGCAATCATATCTAAGATTGAATCATA
Found at i:182648268 original size:42 final size:42
Alignment explanation
Indices: 182648217--182648302 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
182648207 TCTAAGATTC
182648217 ATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCAT
1 ATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCAT
*
182648259 ATATCATATCTAAGATTGCAATCATTTCTAAGATTGTATCAT
1 ATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCAT
182648301 AT
1 AT
182648303 CTAAGATTGC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40
Consensus pattern (42 bp):
ATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCAT
Found at i:182648269 original size:24 final size:24
Alignment explanation
Indices: 182648237--182648302 Score: 81
Period size: 24 Copynumber: 3.0 Consensus size: 24
182648227 TAAGATTGCA
182648237 ATCATATCTAAGATTGTATCATAT
1 ATCATATCTAAGATTGTATCATAT
182648261 ATCATATCTAAGATTG---C--A-
1 ATCATATCTAAGATTGTATCATAT
*
182648279 ATCATTTCTAAGATTGTATCATAT
1 ATCATATCTAAGATTGTATCATAT
182648303 CTAAGATTGC
Statistics
Matches: 35, Mismatches: 1, Indels: 12
0.73 0.02 0.25
Matches are distributed among these distances:
18 15 0.43
19 1 0.03
21 2 0.06
23 1 0.03
24 16 0.46
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.41
Consensus pattern (24 bp):
ATCATATCTAAGATTGTATCATAT
Found at i:182652397 original size:29 final size:29
Alignment explanation
Indices: 182652336--182652434 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
182652326 ACAGTAAGTC
182652336 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
182652364 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
182652393 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
182652421 CGCACACTTAGTGC
1 CGCACACTTAGTGC
182652435 CAATCTCATT
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:182653559 original size:17 final size:18
Alignment explanation
Indices: 182653522--182653559 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
182653512 CACTTTTTTT
182653522 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
182653541 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
182653558 TT
1 TT
182653560 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:182660171 original size:29 final size:29
Alignment explanation
Indices: 182660110--182660208 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
182660100 ACAGTAAGTC
182660110 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
182660138 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
182660167 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
182660195 CGCACACTTAGTGC
1 CGCACACTTAGTGC
182660209 CAATCTCATT
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:182661330 original size:17 final size:18
Alignment explanation
Indices: 182661293--182661330 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
182661283 CACTTTTTTT
182661293 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
182661312 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
182661329 TT
1 TT
182661331 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:182664554 original size:29 final size:29
Alignment explanation
Indices: 182664492--182664594 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
182664482 GTGACGAGAT
* * *
182664492 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
182664521 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
182664550 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
182664579 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
182664595 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:182672558 original size:29 final size:29
Alignment explanation
Indices: 182672496--182672598 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
182672486 GTGACGAGAT
* * *
182672496 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
182672525 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
182672554 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
182672583 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
182672599 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:182676961 original size:29 final size:29
Alignment explanation
Indices: 182676919--182676981 Score: 126
Period size: 29 Copynumber: 2.2 Consensus size: 29
182676909 ATGACTTTTC
182676919 TAAATGACGGCATATATGATATTATGTTT
1 TAAATGACGGCATATATGATATTATGTTT
182676948 TAAATGACGGCATATATGATATTATGTTT
1 TAAATGACGGCATATATGATATTATGTTT
182676977 TAAAT
1 TAAAT
182676982 ATGTGAATGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.37, C:0.06, G:0.16, T:0.41
Consensus pattern (29 bp):
TAAATGACGGCATATATGATATTATGTTT
Found at i:182677972 original size:47 final size:47
Alignment explanation
Indices: 182677939--182678199 Score: 441
Period size: 47 Copynumber: 5.5 Consensus size: 47
182677929 GTATACATGA
* * *
182677939 GATAACGCCTAATGGCCAATGTGATGAAGGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
*
182677986 GATAAGGCCGAATAGCCAATGTGATGAATGTGAACATGCATATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC--ATATGTGT
182678035 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
182678082 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
182678129 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
** *
182678176 GATAAGGTAGAATGGCTAATGTGA
1 GATAAGGCCGAATGGCCAATGTGA
182678200 GATATGTATG
Statistics
Matches: 204, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
47 158 0.77
49 46 0.23
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
Found at i:182678051 original size:96 final size:94
Alignment explanation
Indices: 182677939--182678182 Score: 434
Period size: 96 Copynumber: 2.6 Consensus size: 94
182677929 GTATACATGA
* * *
182677939 GATAACGCCTAATGGCCAATGTGATGAAGGTGAACATGCATATGTGTGATAAGGCCGAATAGCCA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATAGCCA
182678004 ATGTGATGAATGTGAACATGCATATATGTGT
66 ATGTGATGAATGTGAACATGC--ATATGTGT
*
182678035 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATAGCCA
182678100 ATGTGATGAATGTGAACATGCATATGTGT
66 ATGTGATGAATGTGAACATGCATATGTGT
182678129 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGG
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGG
182678183 TAGAATGGCT
Statistics
Matches: 144, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
94 62 0.43
96 82 0.57
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (94 bp):
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATAGCCA
ATGTGATGAATGTGAACATGCATATGTGT
Found at i:182678086 original size:143 final size:141
Alignment explanation
Indices: 182677939--182678199 Score: 441
Period size: 143 Copynumber: 1.8 Consensus size: 141
182677929 GTATACATGA
*
182677939 GATAACGCCTAATGGCCAATGTGATGAAGGTGAACATGCATATGTGTGATAAGGCCGAATAGCCA
1 GATAACGCCGAATGGCCAATGTGATGAAGGTGAACATGCATATGTGTGATAAGGCCGAATAGCCA
*
182678004 ATGTGATGAATGTGAACATGCATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
66 ATGTGATGAATGTGAACATGC--ATATGTGTGATAAGGCAGAATGGCCAATGTGATGAATGTGAA
182678069 CATGCATATGTGT
129 CATGCATATGTGT
* * *
182678082 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 GATAACGCCGAATGGCCAATGTGATGAAGGTGAACATGCATATGTGTGATAAGGCCGAATAGCCA
* *
182678147 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCTAATGTGA
66 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCAGAATGGCCAATGTGA
182678200 GATATGTATG
Statistics
Matches: 111, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
141 29 0.26
143 82 0.74
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (141 bp):
GATAACGCCGAATGGCCAATGTGATGAAGGTGAACATGCATATGTGTGATAAGGCCGAATAGCCA
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCAGAATGGCCAATGTGATGAATGTGAACA
TGCATATGTGT
Found at i:182682575 original size:14 final size:14
Alignment explanation
Indices: 182682556--182682584 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
182682546 TACAATAGGC
182682556 ACTGATTCAATTTT
1 ACTGATTCAATTTT
182682570 ACTGATTCAATTTT
1 ACTGATTCAATTTT
182682584 A
1 A
182682585 AACTCTGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.48
Consensus pattern (14 bp):
ACTGATTCAATTTT
Found at i:182688361 original size:40 final size:40
Alignment explanation
Indices: 182688298--182688478 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
182688288 ATTCGGATTG
* *
182688298 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTGCT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
*
182688337 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
182688377 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* *
182688417 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CT
* **
182688457 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
182688479 TACTTGGTTT
Statistics
Matches: 131, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 29 0.22
40 102 0.78
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.20
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
Found at i:182701552 original size:40 final size:39
Alignment explanation
Indices: 182701455--182701563 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 39
182701445 CTGGAAATTA
* *
182701455 TATCCGGGTTAAGACCGAAGGCATT-GTGCTAGTGGCTAC
1 TATCCGGGCTAAGACCGAAGGCATTCGTGCGAGT-GCTAC
*
182701494 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-CATTC
1 TATCCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTGC-TAC
182701533 TATCCGGCGCTAAGACCGAAGGCATTCGTGC
1 TATCCGG-GCTAAGACCGAAGGCATTCGTGC
182701564 ACTGATTATA
Statistics
Matches: 62, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
38 13 0.21
39 13 0.21
40 29 0.47
41 7 0.11
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (39 bp):
TATCCGGGCTAAGACCGAAGGCATTCGTGCGAGTGCTAC
Found at i:182708664 original size:40 final size:40
Alignment explanation
Indices: 182708601--182708701 Score: 94
Period size: 40 Copynumber: 2.5 Consensus size: 40
182708591 TGAATGATAC
* * * * * *
182708601 CCGGGATAAGCCCCAAAGACAATTATGCTGGAAATTATAT
1 CCGGGATAAGACCCGAAGGCAATTATGCTAGAAACTACAT
* * ***
182708641 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAT
1 CCGGGATAAGACCCGAAGGCAATTATGCTAGAAACTACAT
*
182708681 CCGGGCTAAGACCCGAAGGCA
1 CCGGGATAAGACCCGAAGGCA
182708702 TTCGTGCGAG
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.31, C:0.24, G:0.27, T:0.19
Consensus pattern (40 bp):
CCGGGATAAGACCCGAAGGCAATTATGCTAGAAACTACAT
Done.