Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 586 of 770
Found at i:183182979 original size:16 final size:16
Alignment explanation
Indices: 183182954--183182986 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
183182944 ACGGTATTCT
*
183182954 ATATTTTATAGTAGCA
1 ATATTCTATAGTAGCA
183182970 ATATTCTATAGTAGCA
1 ATATTCTATAGTAGCA
183182986 A
1 A
183182987 AGGAATAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39
Consensus pattern (16 bp):
ATATTCTATAGTAGCA
Found at i:183183484 original size:15 final size:15
Alignment explanation
Indices: 183183451--183183484 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
183183441 AGTTATGTCT
*
183183451 ATGTATGGAATTATA
1 ATGTATGGAATTAGA
*
183183466 ATGTATGGAATTAGC
1 ATGTATGGAATTAGA
183183481 ATGT
1 ATGT
183183485 CAAAAAGATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (15 bp):
ATGTATGGAATTAGA
Found at i:183184507 original size:19 final size:19
Alignment explanation
Indices: 183184485--183184524 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
183184475 TTAAACTTTT
* *
183184485 ATTATACTTTTCTATTCTA
1 ATTAAACTTTTCGATTCTA
183184504 ATTAAACTTTTCGATTCTA
1 ATTAAACTTTTCGATTCTA
183184523 AT
1 AT
183184525 AAAAAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.15, G:0.03, T:0.53
Consensus pattern (19 bp):
ATTAAACTTTTCGATTCTA
Found at i:183186230 original size:14 final size:14
Alignment explanation
Indices: 183186211--183186239 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
183186201 CTTTTTACTT
183186211 TGTTATATAGATTA
1 TGTTATATAGATTA
183186225 TGTTATATAGATTA
1 TGTTATATAGATTA
183186239 T
1 T
183186240 TATTTATCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (14 bp):
TGTTATATAGATTA
Found at i:183186388 original size:21 final size:21
Alignment explanation
Indices: 183186364--183186403 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
183186354 TTTATCAGTA
*
183186364 ATTCCATTTCATTTATATTAT
1 ATTCCATATCATTTATATTAT
*
183186385 ATTCTATATCATTTATATT
1 ATTCCATATCATTTATATT
183186404 TTTAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTCCATATCATTTATATTAT
Found at i:183187003 original size:11 final size:11
Alignment explanation
Indices: 183186987--183187011 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
183186977 CTTTATATTT
183186987 ATATACAATAA
1 ATATACAATAA
183186998 ATATACAATAA
1 ATATACAATAA
183187009 ATA
1 ATA
183187012 CAATAATCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (11 bp):
ATATACAATAA
Found at i:183187705 original size:14 final size:15
Alignment explanation
Indices: 183187674--183187713 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
183187664 TATCTTTATC
183187674 TTATTTATATTCTATT
1 TTATTTAT-TTCTATT
183187690 TTATTTATTTCT-TT
1 TTATTTATTTCTATT
*
183187704 TTTTTTATTT
1 TTATTTATTT
183187714 ATCCATCTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.48
15 4 0.17
16 8 0.35
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (15 bp):
TTATTTATTTCTATT
Found at i:183192398 original size:23 final size:23
Alignment explanation
Indices: 183192368--183192413 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
183192358 TATATTTTGA
183192368 GTTCGTATATAACTAGTCAATAT
1 GTTCGTATATAACTAGTCAATAT
183192391 GTTCGTATATAACTAGTCAATAT
1 GTTCGTATATAACTAGTCAATAT
183192414 CTAATATCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (23 bp):
GTTCGTATATAACTAGTCAATAT
Found at i:183192975 original size:14 final size:14
Alignment explanation
Indices: 183192956--183192983 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
183192946 TCAAGATAAA
183192956 GATAATATTGATCG
1 GATAATATTGATCG
183192970 GATAATATTGATCG
1 GATAATATTGATCG
183192984 AAGGTAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (14 bp):
GATAATATTGATCG
Found at i:183194183 original size:29 final size:29
Alignment explanation
Indices: 183194141--183194198 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
183194131 TATTAACCGA
183194141 TTCCATAGATCTATGTAGTTCCAAAAAAG
1 TTCCATAGATCTATGTAGTTCCAAAAAAG
183194170 TTCCATAGATCTATGTAGTTCCAAAAAAG
1 TTCCATAGATCTATGTAGTTCCAAAAAAG
183194199 AATTTATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (29 bp):
TTCCATAGATCTATGTAGTTCCAAAAAAG
Found at i:183203693 original size:17 final size:18
Alignment explanation
Indices: 183203651--183203699 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
183203641 AGTTGAAAAG
183203651 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
183203670 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
183203687 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
183203700 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:183204587 original size:40 final size:40
Alignment explanation
Indices: 183204521--183204687 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
183204511 AAATTGAATG
* * *
183204521 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
183204560 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
183204600 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
183204640 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
183204680 ATATCCGG
1 ATATCCGG
183204688 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:183207667 original size:40 final size:40
Alignment explanation
Indices: 183207593--183207773 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
183207583 AACCCAAGTA
* *
183207593 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
183207632 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
183207672 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
183207712 CCTTCGGGACTTAGCCC-GATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
183207751 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
183207774 CATTCGAATA
Statistics
Matches: 131, Mismatches: 8, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 50 0.38
40 78 0.60
41 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:183207741 original size:79 final size:80
Alignment explanation
Indices: 183207593--183207773 Score: 296
Period size: 79 Copynumber: 2.3 Consensus size: 80
183207583 AACCCAAGTA
* * *
183207593 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
183207657 TCAATAGCACAAAAG
66 TCAATAGCACAAAAG
183207672 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCC-GATATA
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
183207735 GTCAATAGCACAAATG
65 GTCAATAGCACAAAAG
183207751 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
183207774 CATTCGAATA
Statistics
Matches: 96, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
79 57 0.59
80 38 0.40
81 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCAATAGCACAAAAG
Found at i:183226097 original size:29 final size:29
Alignment explanation
Indices: 183226063--183226222 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
183226053 TACTCGATCA
* *
183226063 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACATAGTGCCATATGATTTAAGCC
** * *
183226092 CGCACACATAGTGCCATAT-AGTCCAAACT
1 CGCACACATAGTGCCATATGA-TTTAAGCC
* *
183226121 CGTACACTTAGTGCCATATGATTTAAGCC
1 CGCACACATAGTGCCATATGATTTAAGCC
** * *
183226150 CGCACACATAGTGCCATAT-AGTCCAAACT
1 CGCACACATAGTGCCATATGA-TTTAAGCC
*
183226179 CGCACACTTAGTGCCATATGATTTAAGCC
1 CGCACACATAGTGCCATATGATTTAAGCC
183226208 CGCACACATAGTGCC
1 CGCACACATAGTGCC
183226223 TTATAGTCCA
Statistics
Matches: 103, Mismatches: 24, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
28 2 0.02
29 99 0.96
30 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACATAGTGCCATATGATTTAAGCC
Found at i:183226137 original size:58 final size:58
Alignment explanation
Indices: 183226063--183226281 Score: 361
Period size: 58 Copynumber: 3.8 Consensus size: 58
183226053 TACTCGATCA
*
183226063 CGCACACTTAGTGCCATGTGATTTAAGCCCGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATGATTTAAGCCCGCACACATAGTGCCATATAGTCCAAACT
*
183226121 CGTACACTTAGTGCCATATGATTTAAGCCCGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATGATTTAAGCCCGCACACATAGTGCCATATAGTCCAAACT
*
183226179 CGCACACTTAGTGCCATATGATTTAAGCCCGCACACATAGTGCCTTATAGTCCAAACT
1 CGCACACTTAGTGCCATATGATTTAAGCCCGCACACATAGTGCCATATAGTCCAAACT
* *
183226237 CGCACACTTAGTGCCATA-CATTTCAAGCTCGCACAC-TCAGTGCCA
1 CGCACACTTAGTGCCATATGATTT-AAGCCCGCACACAT-AGTGCCA
183226282 ATCTCGTCAC
Statistics
Matches: 152, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
57 5 0.03
58 147 0.97
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (58 bp):
CGCACACTTAGTGCCATATGATTTAAGCCCGCACACATAGTGCCATATAGTCCAAACT
Found at i:183226240 original size:29 final size:29
Alignment explanation
Indices: 183226092--183226281 Score: 179
Period size: 29 Copynumber: 6.6 Consensus size: 29
183226082 GATTTAAGCC
183226092 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACATAGTGCCATATAGTCCAAACT
* * ** * *
183226121 CGTACACTTAGTGCCATAT-GATTTAAGCC
1 CGCACACATAGTGCCATATAG-TCCAAACT
183226150 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACATAGTGCCATATAGTCCAAACT
* ** * *
183226179 CGCACACTTAGTGCCATAT-GATTTAAGCC
1 CGCACACATAGTGCCATATAG-TCCAAACT
*
183226208 CGCACACATAGTGCCTTATAGTCCAAACT
1 CGCACACATAGTGCCATATAGTCCAAACT
* * * * *
183226237 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACATAGTGCCATATAGTCCAAACT
183226266 CGCACAC-TCAGTGCCA
1 CGCACACAT-AGTGCCA
183226282 ATCTCGTCAC
Statistics
Matches: 127, Mismatches: 29, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
28 3 0.02
29 122 0.96
30 2 0.02
ACGTcount: A:0.30, C:0.31, G:0.15, T:0.24
Consensus pattern (29 bp):
CGCACACATAGTGCCATATAGTCCAAACT
Found at i:183234263 original size:29 final size:28
Alignment explanation
Indices: 183234229--183234386 Score: 131
Period size: 28 Copynumber: 5.6 Consensus size: 28
183234219 ATACCGATCA
* * *
183234229 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAACC
* * *
183234258 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAACC
* *
183234287 CGCACACTTAGTGCCATATGATT-TAAGC
1 CGCACACTTAGTGCCATAT-ATTCAAACC
* * *
183234315 CGCACACATAGTGCCATATAGTCAAACT
1 CGCACACTTAGTGCCATATATTCAAACC
* * *
183234343 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCATATA-TTCAAACC
*
183234372 CGCA-ACTCAGTGCCA
1 CGCACACTTAGTGCCA
183234387 ATCTCGTCAC
Statistics
Matches: 104, Mismatches: 21, Indels: 9
0.78 0.16 0.07
Matches are distributed among these distances:
27 2 0.02
28 51 0.49
29 50 0.48
30 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAACC
Found at i:183234300 original size:58 final size:56
Alignment explanation
Indices: 183234229--183234360 Score: 237
Period size: 58 Copynumber: 2.3 Consensus size: 56
183234219 ATACCGATCA
*
183234229 CGCACACTTAGTGCCATGTGATTTAAGCCCGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATGATTTAAG-CCGCACACATAGTGCCATATAGT-CAAACT
183234287 CGCACACTTAGTGCCATATGATTTAAGCCGCACACATAGTGCCATATAGTCAAACT
1 CGCACACTTAGTGCCATATGATTTAAGCCGCACACATAGTGCCATATAGTCAAACT
183234343 CGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
183234361 CATTTCAAGC
Statistics
Matches: 73, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
56 24 0.33
57 23 0.32
58 26 0.36
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (56 bp):
CGCACACTTAGTGCCATATGATTTAAGCCGCACACATAGTGCCATATAGTCAAACT
Found at i:183234326 original size:28 final size:28
Alignment explanation
Indices: 183234229--183234386 Score: 149
Period size: 29 Copynumber: 5.6 Consensus size: 28
183234219 ATACCGATCA
* * * *
183234229 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAACT
* *
183234258 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAACT
* *
183234287 CGCACACTTAGTGCCATATGATTTAAGC-
1 CGCACACTTAGTGCCATAT-ATTCAAACT
* *
183234315 CGCACACATAGTGCCATATAGTCAAACT
1 CGCACACTTAGTGCCATATATTCAAACT
* *
183234343 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCATATA-TTCAAACT
*
183234372 CGCA-ACTCAGTGCCA
1 CGCACACTTAGTGCCA
183234387 ATCTCGTCAC
Statistics
Matches: 106, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
27 5 0.05
28 47 0.44
29 53 0.50
30 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAACT
Found at i:183234386 original size:56 final size:56
Alignment explanation
Indices: 183234229--183234375 Score: 224
Period size: 56 Copynumber: 2.6 Consensus size: 56
183234219 ATACCGATCA
*
183234229 CGCACACTTAGTGCCATGTGATTTAAGCCCGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-AGATTTAAG-CCGCACACATAGTGCCATATAGTCCAAACT
183234287 CGCACACTTAGTGCCATATGATTTAAGCCGCACACATAGTGCCATATAGT-CAAACT
1 CGCACACTTAGTGCCATA-GATTTAAGCCGCACACATAGTGCCATATAGTCCAAACT
*
183234343 CGCACACTTAGTGCCATACATTTCAAGCTCGCA
1 CGCACACTTAGTGCCATAGATTT-AAGC-CGCA
183234376 ACTCAGTGCC
Statistics
Matches: 84, Mismatches: 2, Indels: 7
0.90 0.02 0.08
Matches are distributed among these distances:
55 4 0.05
56 28 0.33
57 27 0.32
58 25 0.30
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.24
Consensus pattern (56 bp):
CGCACACTTAGTGCCATAGATTTAAGCCGCACACATAGTGCCATATAGTCCAAACT
Found at i:183245549 original size:25 final size:25
Alignment explanation
Indices: 183245502--183245549 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
183245492 GTCCATTCCC
* *
183245502 AAAATCACATCAAATTCATCAAATG
1 AAAATAACATCAAATTCACCAAATG
183245527 AAAATAACATCAAA-TCAGCCAAA
1 AAAATAACATCAAATTCA-CCAAA
183245550 AAGTAATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 3 0.15
25 17 0.85
ACGTcount: A:0.56, C:0.21, G:0.04, T:0.19
Consensus pattern (25 bp):
AAAATAACATCAAATTCACCAAATG
Found at i:183248441 original size:31 final size:31
Alignment explanation
Indices: 183248405--183248505 Score: 93
Period size: 31 Copynumber: 3.3 Consensus size: 31
183248395 TTGCCCTTAA
183248405 CTTTTAAACATTTTACAATTAAGTCCCTAGG
1 CTTTTAAACATTTTACAATTAAGTCCCTAGG
* * * *
183248436 CTTTTAAA-ATGAATTT-C-ATTCAATTTCATAGA
1 CTTTTAAACAT---TTTACAATT-AAGTCCCTAGG
*
183248468 CTTTT-AACGTTTTACAATTAAGTCCCTAGG
1 CTTTTAAACATTTTACAATTAAGTCCCTAGG
183248498 CTTTTAAA
1 CTTTTAAA
183248506 ATGAATTTCA
Statistics
Matches: 53, Mismatches: 9, Indels: 16
0.68 0.12 0.21
Matches are distributed among these distances:
29 3 0.06
30 15 0.28
31 18 0.34
32 14 0.26
33 3 0.06
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.42
Consensus pattern (31 bp):
CTTTTAAACATTTTACAATTAAGTCCCTAGG
Found at i:183248489 original size:62 final size:63
Alignment explanation
Indices: 183248404--183248526 Score: 230
Period size: 62 Copynumber: 2.0 Consensus size: 63
183248394 TTTGCCCTTA
183248404 ACTTTTAAACATTTTACAATTAAGTCCCTAGGCTTTTAAAATGAATTTCATTCAATTTCATAG
1 ACTTTTAAACATTTTACAATTAAGTCCCTAGGCTTTTAAAATGAATTTCATTCAATTTCATAG
*
183248467 ACTTTT-AACGTTTTACAATTAAGTCCCTAGGCTTTTAAAATGAATTTCATTCAATTTCAT
1 ACTTTTAAACATTTTACAATTAAGTCCCTAGGCTTTTAAAATGAATTTCATTCAATTTCAT
183248527 TAAATTGAAT
Statistics
Matches: 59, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
62 53 0.90
63 6 0.10
ACGTcount: A:0.33, C:0.16, G:0.08, T:0.42
Consensus pattern (63 bp):
ACTTTTAAACATTTTACAATTAAGTCCCTAGGCTTTTAAAATGAATTTCATTCAATTTCATAG
Found at i:183248504 original size:30 final size:31
Alignment explanation
Indices: 183248405--183248505 Score: 91
Period size: 30 Copynumber: 3.3 Consensus size: 31
183248395 TTGCCCTTAA
*
183248405 CTTTTAAACATTTTACAATTAAGTCCCTAGG
1 CTTTTAAACGTTTTACAATTAAGTCCCTAGG
* * * * * *
183248436 CTTTTAAAATGAATTT-C-ATTCAATTTCATAGA
1 CTTTT-AAACG-TTTTACAATT-AAGTCCCTAGG
183248468 CTTTT-AACGTTTTACAATTAAGTCCCTAGG
1 CTTTTAAACGTTTTACAATTAAGTCCCTAGG
183248498 CTTTTAAA
1 CTTTTAAA
183248506 ATGAATTTCA
Statistics
Matches: 51, Mismatches: 13, Indels: 12
0.67 0.17 0.16
Matches are distributed among these distances:
29 3 0.06
30 16 0.31
31 13 0.25
32 16 0.31
33 3 0.06
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.42
Consensus pattern (31 bp):
CTTTTAAACGTTTTACAATTAAGTCCCTAGG
Found at i:183251233 original size:27 final size:27
Alignment explanation
Indices: 183251183--183251234 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
183251173 CCCAATTCAA
* * *
183251183 TAAAATGACTGTTATACTCTTATGAGG
1 TAAAATGACTGATATACCCCTATGAGG
*
183251210 TAAAATGACTGATATGCCCCTATGA
1 TAAAATGACTGATATACCCCTATGA
183251235 TATATATGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (27 bp):
TAAAATGACTGATATACCCCTATGAGG
Found at i:183261945 original size:40 final size:40
Alignment explanation
Indices: 183261840--183262086 Score: 351
Period size: 40 Copynumber: 6.2 Consensus size: 40
183261830 TGGATGATAA
*
183261840 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCT-ACTATA-T
183261880 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
*
183261919 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* *
183261959 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* * *
183261999 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* *
183262039 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTA-CTATAT
183262079 CC-GGCTAA
1 CCGGGCTAA
183262087 ATTCCAAAGA
Statistics
Matches: 193, Mismatches: 10, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
39 41 0.21
40 152 0.79
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
Found at i:183270881 original size:40 final size:39
Alignment explanation
Indices: 183270774--183270956 Score: 192
Period size: 39 Copynumber: 4.6 Consensus size: 39
183270764 CGGATGATAA
* * *
183270774 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA-T
* * * *
183270814 TCGGGCTAA-ACCCGAAGGCAATTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AT
* *
183270853 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTGAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
* * *
183270892 CCAGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AT
183270932 CCGGG-TCAAGTCCCGAAGGCATTTG
1 CCGGGCT-AAGTCCCGAAGGCATTTG
183270957 AGCAAGTAGT
Statistics
Matches: 120, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 64 0.53
40 54 0.45
41 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:183275536 original size:28 final size:29
Alignment explanation
Indices: 183275505--183275577 Score: 105
Period size: 28 Copynumber: 2.6 Consensus size: 29
183275495 GTTGTGAGAT
*
183275505 TGGCACTAAGTGTGCG-GCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
183275533 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
183275562 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
183275578 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
28 21 0.51
29 20 0.49
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:183283306 original size:29 final size:29
Alignment explanation
Indices: 183283271--183283344 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
183283261 GTTGTGAGAT
* *
183283271 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
183283300 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
183283329 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
183283345 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:183287369 original size:40 final size:40
Alignment explanation
Indices: 183287292--183287469 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
183287282 AAACCAAGTA
* * **
183287292 CCTTCAGGATTTAG-CCGGATATAGCT-ACTCGTTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
183287331 CCTTCAGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
183287371 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
183287411 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
183287451 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
183287470 TTATCATCCG
Statistics
Matches: 126, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 15 0.12
40 111 0.88
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:183298874 original size:39 final size:39
Alignment explanation
Indices: 183298820--183298972 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
183298810 GAATGTTCGA
*
183298820 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
183298859 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
183298898 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
183298937 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
183298973 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:183298988 original size:40 final size:39
Alignment explanation
Indices: 183298821--183299002 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
183298811 AATGTTCGAG
* *
183298821 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
183298860 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
183298899 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
183298938 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
183298978 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
183299003 TGTTTTGAAC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:183308484 original size:40 final size:40
Alignment explanation
Indices: 183308418--183308568 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
183308408 AAATTGAATG
* * *
183308418 ATATCCGGGCTAA-ATCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
183308457 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
183308497 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
183308537 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
183308569 ACATGGTTAT
Statistics
Matches: 89, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
39 15 0.17
40 72 0.81
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:183308582 original size:40 final size:40
Alignment explanation
Indices: 183308455--183308584 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
183308445 ATGCTGGAAA
* * * *
183308455 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
183308495 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
183308535 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
183308575 TTATATCCGG
1 TTATATCCGG
183308585 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:183314843 original size:80 final size:80
Alignment explanation
Indices: 183314759--183314907 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
183314749 TATGGTAACC
* * * *
183314759 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
183314823 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
183314839 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
183314904 CCGG
66 CCGG
183314908 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:183314849 original size:40 final size:38
Alignment explanation
Indices: 183314800--183314907 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
183314790 ATCACGATTT
*
183314800 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
183314840 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
183314880 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
183314908 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:183322961 original size:80 final size:80
Alignment explanation
Indices: 183322877--183323025 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
183322867 TATGGTAACC
* * * *
183322877 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
183322941 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
183322957 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
183323022 CCGG
66 CCGG
183323026 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:183322967 original size:40 final size:38
Alignment explanation
Indices: 183322918--183323025 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
183322908 ATCACGATTT
*
183322918 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
183322958 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
183322998 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
183323026 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:183327532 original size:25 final size:25
Alignment explanation
Indices: 183327495--183327546 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
183327485 AAGGAATTCG
183327495 CACACACACAGTGC-CTCTAATCATT
1 CACACACACAGTGCTCT-TAATCATT
* *
183327520 CACACACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTTAATCATT
183327545 CA
1 CA
183327547 TTATTACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.29
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Found at i:183327754 original size:40 final size:40
Alignment explanation
Indices: 183327722--183328151 Score: 621
Period size: 40 Copynumber: 10.8 Consensus size: 40
183327712 CCAGCATGAT
* * * *
183327722 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
183327762 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
**
183327802 TGCTCTTCGAAACTTAGCCC-GATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
183327841 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
183327881 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
183327921 TGCTCTTCGGGACTTAGCCCGAATACATCACTTGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
183327961 TGCTCTTTGGG-TTTAGCCCGAATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
183328000 TGCTCTTCGGGATTTAGCTCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
183328040 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
183328080 TGCTCTTTGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
183328120 TGCTCTTCGGGATTTAGCCCGGACATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
183328152 CTCAATTCTC
Statistics
Matches: 355, Mismatches: 33, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
39 71 0.20
40 284 0.80
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:183327936 original size:119 final size:119
Alignment explanation
Indices: 183327722--183328151 Score: 637
Period size: 119 Copynumber: 3.6 Consensus size: 119
183327712 CCAGCATGAT
* * * * * *
183327722 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATA
* **
183327787 TATCACTAGCACGAATGCTCTTCGAAACTTAGCCCGATACATCACTAGCACGAA
66 CATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGATACATCACTAGCACGAA
* *
183327841 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATA
*
183327906 CATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGAATACATCACTTGCACGAA
66 CATCACTAGCACGAATGCTCTTCGGGACTTAGCCCG-ATACATCACTAGCACGAA
* * * *
183327961 TGCTCTTTGGG-TTTAGCCCGAATACATCACTAGCACGAATGCTCTTCGGGATTTAGCTCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATA
*
183328025 CATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
66 CATCACTAGCACGAATGCTCTTCGGGACTTAG-CCCGATACATCACTAGCACGAA
* * * *
183328080 TGCTCTTTGGGATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGACA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATA
*
183328145 TATCACT
66 CATCACT
183328152 CTCAATTCTC
Statistics
Matches: 283, Mismatches: 25, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
119 198 0.70
120 85 0.30
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (119 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATA
CATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGATACATCACTAGCACGAA
Found at i:183327943 original size:23 final size:23
Alignment explanation
Indices: 183327872--183327944 Score: 59
Period size: 23 Copynumber: 3.4 Consensus size: 23
183327862 GATACATCAC
183327872 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * * *
183327895 TAGCCCGGAT--ACATC---AC-
1 TAGCACGAATGCTCTTCGGGACT
183327912 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
*
183327935 TAGCCCGAAT
1 TAGCACGAAT
183327945 ACATCACTTG
Statistics
Matches: 35, Mismatches: 9, Indels: 12
0.62 0.16 0.21
Matches are distributed among these distances:
17 8 0.23
18 2 0.06
19 3 0.09
21 3 0.09
22 2 0.06
23 17 0.49
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGGACT
Found at i:183327958 original size:159 final size:159
Alignment explanation
Indices: 183327722--183328128 Score: 629
Period size: 159 Copynumber: 2.6 Consensus size: 159
183327712 CCAGCATGAT
* * * * * *
183327722 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATA
183327787 TATCACTAGCACGAATGCTCTTCGAAACTTAGCCCG-ATACATCACTAGCACGAATGCTCTTCGG
66 TATCACTAGCACGAATGCTCTTCG-AACTTAGCCCGAATACATCACTAGCACGAATGCTCTTCGG
183327851 GACTTAG-TCCGGATACATCACTAGCACGAA
130 GACTTAGCT-CGGATACATCACTAGCACGAA
* *
183327881 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGAATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATA
* * * ***
183327946 CATCACTTGCACGAATGCTCTTTGGGTTTAGCCCGAATACATCACTAGCACGAATGCTCTTCGGG
66 TATCACTAGCACGAATGCTCTTCGAACTTAGCCCGAATACATCACTAGCACGAATGCTCTTCGGG
*
183328011 ATTTAGCTCGGATACATCACTAGCACGAA
131 ACTTAGCTCGGATACATCACTAGCACGAA
* *
183328040 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTTGGGATTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATA
183328105 TATCACTAGCACGAATGCTCTTCG
66 TATCACTAGCACGAATGCTCTTCG
183328129 GGATTTAGCC
Statistics
Matches: 224, Mismatches: 22, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
158 8 0.04
159 215 0.96
160 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (159 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATA
TATCACTAGCACGAATGCTCTTCGAACTTAGCCCGAATACATCACTAGCACGAATGCTCTTCGGG
ACTTAGCTCGGATACATCACTAGCACGAA
Found at i:183330814 original size:24 final size:23
Alignment explanation
Indices: 183330782--183330890 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
183330772 ACCAAACGTT
* **
183330782 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
183330806 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
183330830 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
183330854 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
183330878 GCACACATAGTGC
1 GCACACATAGTGC
183330891 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:183330856 original size:48 final size:48
Alignment explanation
Indices: 183330782--183330890 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
183330772 ACCAAACGTT
* **
183330782 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
183330830 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
183330878 GCACACATAGTGC
1 GCACACATAGTGC
183330891 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:183331832 original size:37 final size:37
Alignment explanation
Indices: 183331782--183331940 Score: 273
Period size: 37 Copynumber: 4.3 Consensus size: 37
183331772 GGCTGTTACA
183331782 TCTTACCCGGACAAAATCTCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCTCCACACGTAGTCATCGGG
183331819 TCTTACCCGGACAAAATCTCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCTCCACACGTAGTCATCGGG
183331856 TCTTACCCGGACAAAATCTCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCTCCACACGTAGTCATCGGG
* * * *
183331893 TCTTACCCGAACATACTCTCCACGCGTAGTCATCGGG
1 TCTTACCCGGACAAAATCTCCACACGTAGTCATCGGG
*
183331930 TCTCACCCGGA
1 TCTTACCCGGA
183331941 ATATATTTCC
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 116 1.00
ACGTcount: A:0.25, C:0.34, G:0.19, T:0.22
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCTCCACACGTAGTCATCGGG
Found at i:183332155 original size:47 final size:48
Alignment explanation
Indices: 183332103--183332240 Score: 190
Period size: 47 Copynumber: 2.9 Consensus size: 48
183332093 TTTCACACTA
* * * *
183332103 GCCATTCGGCTTTACCACATATATGCACGTTCATATTCACCACAATT-
1 GCCATTCGGCCTTATCACATATATGCACGTTCACATTCATCACAATTG
* * *
183332150 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCAC-ATTG
1 GCCATTCGGCCTTATCACATATATGCACGTTCACATTCATCACAATTG
*
183332197 GCCATTCGGCCTTATCACATATATGCACATTCACATTCATCACA
1 GCCATTCGGCCTTATCACATATATGCACGTTCACATTCATCACA
183332241 TAAAATCCTA
Statistics
Matches: 78, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
46 3 0.04
47 75 0.96
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.30
Consensus pattern (48 bp):
GCCATTCGGCCTTATCACATATATGCACGTTCACATTCATCACAATTG
Found at i:183332238 original size:25 final size:25
Alignment explanation
Indices: 183332118--183332242 Score: 68
Period size: 25 Copynumber: 5.2 Consensus size: 25
183332108 TCGGCTTTAC
* * *
183332118 CACATATATGCACGTTCATATTCAC
1 CACATATATGCACATTCACATTCAT
* *
183332143 CACA-AT-TGC-CATTCGGCCTT-AT
1 CACATATATGCACATTC-ACATTCAT
* ***
183332165 CACACATATGCATGCTCACATTCAT
1 CACATATATGCACATTCACATTCAT
* * *
183332190 CACAT-T-GGC-CATTCGGCCTT-AT
1 CACATATATGCACATTC-ACATTCAT
183332212 CACATATATGCACATTCACATTCAT
1 CACATATATGCACATTCACATTCAT
183332237 CACATA
1 CACATA
183332243 AAATCCTAAA
Statistics
Matches: 70, Mismatches: 20, Indels: 20
0.64 0.18 0.18
Matches are distributed among these distances:
22 18 0.26
23 13 0.19
24 14 0.20
25 25 0.36
ACGTcount: A:0.30, C:0.30, G:0.10, T:0.30
Consensus pattern (25 bp):
CACATATATGCACATTCACATTCAT
Found at i:183335829 original size:40 final size:39
Alignment explanation
Indices: 183335664--183335847 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
183335654 AAATTGAATG
* * *
183335664 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
183335704 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
183335744 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
183335784 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
183335823 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
183335848 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:183335872 original size:80 final size:81
Alignment explanation
Indices: 183335704--183335892 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
183335694 GCTGGAAATT
* * * *
183335704 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
183335769 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
183335785 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
183335848 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
183335864 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
183335893 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:183341903 original size:2 final size:2
Alignment explanation
Indices: 183341896--183341931 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
183341886 TTGTTTGATG
183341896 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
183341932 TCGGCAATGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:183343234 original size:66 final size:66
Alignment explanation
Indices: 183343154--183343280 Score: 236
Period size: 66 Copynumber: 1.9 Consensus size: 66
183343144 TGATATGTAG
*
183343154 ATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCATTA
1 ATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCATTA
183343219 T
66 T
*
183343220 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
1 ATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
183343281 GAATGGCTAA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (66 bp):
ATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCATTA
T
Found at i:183343273 original size:48 final size:48
Alignment explanation
Indices: 183343217--183343344 Score: 238
Period size: 48 Copynumber: 2.7 Consensus size: 48
183343207 GTAAAGCCAT
183343217 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* *
183343265 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
183343313 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
183343345 TGTTGTAACA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
48 78 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
Found at i:183343438 original size:37 final size:37
Alignment explanation
Indices: 183343396--183343510 Score: 221
Period size: 37 Copynumber: 3.1 Consensus size: 37
183343386 TATTCCGGTG
183343396 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
*
183343433 AGACCCGATGACTACATGTGGAGATTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
183343470 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
183343507 AGAC
1 AGAC
183343511 TTCGTAATAA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 76 1.00
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.23
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
Found at i:183345609 original size:40 final size:39
Alignment explanation
Indices: 183345543--183345707 Score: 147
Period size: 40 Copynumber: 4.2 Consensus size: 39
183345533 AAATTGAATG
* *
183345543 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
* * * **
183345582 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
* *
183345622 ACATCCGGGCTAAGACCCGAAGGC-ATTCG-TGCGAGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTTGCTG-GAGATT
* * ** *
183345660 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
183345700 ATATCCGG
1 ATATCCGG
183345708 TTATATTCCG
Statistics
Matches: 98, Mismatches: 23, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
37 1 0.01
38 26 0.27
39 18 0.18
40 53 0.54
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTTGCTGGAGATT
Found at i:183345675 original size:38 final size:38
Alignment explanation
Indices: 183345544--183345691 Score: 149
Period size: 40 Copynumber: 3.8 Consensus size: 38
183345534 AATTGAATGA
* * * *
183345544 TATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGATTC
* * *
183345583 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-TC
183345621 TACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATTC
1 T--ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATTC
*
183345661 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
183345692 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
37 1 0.01
38 28 0.31
39 17 0.19
40 44 0.48
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATTC
Found at i:183345706 original size:78 final size:78
Alignment explanation
Indices: 183345543--183345707 Score: 192
Period size: 78 Copynumber: 2.1 Consensus size: 78
183345533 AAATTGAATG
*
183345543 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
183345608 TTGTGCTAGTGGCT
65 TTGTGCTAGTGACT
* * * * *
183345622 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCA
* *
183345685 TTTGTGC-ACGTGATT
64 ATTGTGCTA-GTGACT
183345700 ATATCCGG
1 ATATCCGG
183345708 TTATATTCCG
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
77 1 0.01
78 45 0.62
79 16 0.22
80 11 0.15
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGACT
Found at i:183353191 original size:40 final size:40
Alignment explanation
Indices: 183353025--183353209 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
183353015 TTCGAATGAT
* * *
183353025 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAA
** * *
183353065 ATCCGGAATAAGAT-CCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
183353105 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* *
183353145 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTGTA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT-AA
*
183353186 A-CCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATT
183353210 TGAATGTGTA
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 111 0.93
41 8 0.07
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:183353203 original size:80 final size:80
Alignment explanation
Indices: 183353025--183353212 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
183353015 TTCGAATGAT
* *
183353025 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGAATAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGAATAAGATCCGAAGGCATA
183353090 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* * **
183353105 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-GAGCT-ACTAAATCCGGGTTAAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGAATAAGAT-CCGAAGG
* *
183353166 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
183353186 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
183353213 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGAATAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:183361157 original size:40 final size:40
Alignment explanation
Indices: 183360992--183361175 Score: 171
Period size: 40 Copynumber: 4.6 Consensus size: 40
183360982 TTCGAATGAT
* * *
183360992 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAA
** * *
183361032 AT-CGGAATAAGAT-CCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
183361071 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* *
183361111 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTGTA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT-AA
*
183361152 A-CCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATT
183361176 TGAATGTGTA
Statistics
Matches: 118, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
39 25 0.21
40 91 0.77
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:183361169 original size:80 final size:79
Alignment explanation
Indices: 183360992--183361178 Score: 195
Period size: 80 Copynumber: 2.3 Consensus size: 79
183360982 TTCGAATGAT
* *
183360992 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCGGAATAAGATCCGACGGCATAC
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCGGAATAAGATCCGAAGGCATAC
183361057 GTGCGAGTTACTAA
66 GTGCGAGTTACTAA
* * **
183361071 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-GAGCT-ACTAAATCCGGGTTAAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAAT-CGGAATAAGAT-CCGAAGG
* *
183361132 CATTCGTGCGAGTTACTGTA
61 CATACGTGCGAGTTACT-AA
*
183361152 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
183361179 ATGTGTAGCC
Statistics
Matches: 90, Mismatches: 10, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
79 33 0.37
80 52 0.58
81 5 0.06
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCGGAATAAGATCCGAAGGCATAC
GTGCGAGTTACTAA
Found at i:183364508 original size:17 final size:17
Alignment explanation
Indices: 183364486--183364528 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
183364476 TTAGAGAAAT
183364486 GATGTCTGAATTGTAAA
1 GATGTCTGAATTGTAAA
183364503 GATGTCTGAATTGTAAA
1 GATGTCTGAATTGTAAA
183364520 GATGTCTGA
1 GATGTCTGA
183364529 GTATAACAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.33, C:0.07, G:0.26, T:0.35
Consensus pattern (17 bp):
GATGTCTGAATTGTAAA
Found at i:183366114 original size:78 final size:80
Alignment explanation
Indices: 183365946--183366162 Score: 250
Period size: 79 Copynumber: 2.7 Consensus size: 80
183365936 GCTACTCGTT
*
183365946 CAAATGCCTTCGGGACATAGCCCGGTTATAGCAACTCGCACAAATGCCTTCGGGACTTAACCAGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAACCAGG
*
183366011 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* * * *
183366026 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGA-TCTAGCCA
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGCAACTCGCACAAATGCCTTCGGGACT-TAACCA
183366087 GGAATTAGTAACTCGCA
64 GGAATTAGTAACTCGCA
* * * *
183366104 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTC-ACTTAGCACAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAG-CAAC-TCGCACAAATGCCTTCGGGACTTA
183366163 GCCCGGACAT
Statistics
Matches: 117, Mismatches: 11, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
77 3 0.03
78 35 0.30
79 51 0.44
80 27 0.23
81 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAACCAGG
AATTAGTAACTCGCA
Found at i:183366169 original size:40 final size:40
Alignment explanation
Indices: 183365927--183366169 Score: 250
Period size: 40 Copynumber: 6.1 Consensus size: 40
183365917 CGGAATTTAA
** *
183365927 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
183365967 CCGGTTATAGCAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
183366007 CAGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
183366046 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGA-TCTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACT-TAGC
* *
183366085 CAGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
183366125 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
183366165 CCGGA
1 CCGGA
183366170 CATCATTCGA
Statistics
Matches: 172, Mismatches: 22, Indels: 18
0.81 0.10 0.08
Matches are distributed among these distances:
38 3 0.02
39 67 0.39
40 89 0.52
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:183377203 original size:22 final size:22
Alignment explanation
Indices: 183377188--183377305 Score: 150
Period size: 22 Copynumber: 5.3 Consensus size: 22
183377178 AGCTGAACAA
*
183377188 TAAGCTCTATTGAGCTGAAATAG
1 TAAGCTC-AATGAGCTGAAATAG
183377211 TAAGCTCAATGAGCTGAAATAG
1 TAAGCTCAATGAGCTGAAATAG
*
183377233 TAAGCTCAATGAGCTG-AACAG
1 TAAGCTCAATGAGCTGAAATAG
* *
183377254 TAAGCTCTATTGAGCT-AAATCG
1 TAAGCTC-AATGAGCTGAAATAG
*
183377276 TAAGCTCCAATGAGCTAAAATAG
1 TAAGCT-CAATGAGCTGAAATAG
183377299 TAAGCTC
1 TAAGCTC
183377306 TTACAAGCTA
Statistics
Matches: 84, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
21 11 0.13
22 54 0.64
23 19 0.23
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.25
Consensus pattern (22 bp):
TAAGCTCAATGAGCTGAAATAG
Found at i:183377287 original size:66 final size:66
Alignment explanation
Indices: 183377178--183377305 Score: 213
Period size: 66 Copynumber: 1.9 Consensus size: 66
183377168 AGCTCCTTCA
*
183377178 AGCTGAACAATAAGCTCTATTGAGCTGAAATAGTAAGCTCAATGAGCTGAAATAGTAAGCTCAAT
1 AGCTGAACAATAAGCTCTATTGAGCTGAAATAGTAAGCTCAATGAGCTAAAATAGTAAGCTCAAT
183377243 G
66 G
* *
183377244 AGCTGAACAGTAAGCTCTATTGAGCT-AAATCGTAAGCTCCAATGAGCTAAAATAGTAAGCTC
1 AGCTGAACAATAAGCTCTATTGAGCTGAAATAGTAAGCT-CAATGAGCTAAAATAGTAAGCTC
183377306 TTACAAGCTA
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
65 11 0.19
66 47 0.81
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.24
Consensus pattern (66 bp):
AGCTGAACAATAAGCTCTATTGAGCTGAAATAGTAAGCTCAATGAGCTAAAATAGTAAGCTCAAT
G
Found at i:183389732 original size:58 final size:59
Alignment explanation
Indices: 183389641--183389761 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
183389631 CCCTCCCCAA
* *
183389641 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCAGTACCCAATAATGAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCAGTACCCAACAATGAATGAACCG
* * *
183389700 TCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCAGTACCCAACAATGAATGAACCG
183389758 TCCC
1 TCCC
183389762 TGTCCCTCCA
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 53 0.93
59 4 0.07
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCAGTACCCAACAATGAATGAACCG
Found at i:183390660 original size:84 final size:84
Alignment explanation
Indices: 183390507--183391148 Score: 748
Period size: 83 Copynumber: 7.7 Consensus size: 84
183390497 TGGATATGCA
* *
183390507 GGAGCCTCGGACACCATCGGTAACCTAGG-CCTTGGTCGTGCGGGAAGCCTCGGGCACCATCGAC
1 GGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGG-AGCCTCGGGCACCATCGGC
*
183390571 AACCTAGGCCCTTGGTCTTGC-
64 AACCTAGGCCC-TGGTCGTGCG
* *
183390592 GGAGCCTCAGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA
1 GGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
183390657 CCTAGGCCCCTGGTCGTGCG
66 CCTAGG-CCCTGGTCGTGCG
* * * * *
183390677 GGAGCCTCAGACACCATC-GAACCTAGGCCCCTGGTCGT-AGGGAACTCTC-GGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGC-CTCGGGCACCATCGGCA
183390739 ACCTAGGCCCTTGGTCGTGCG
65 ACCTAGGCCC-TGGTCGTGCG
* *
183390760 GGAGCCTC-GG-ACCATCGGCAACCTAGGCCCCTGATCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-
183390823 AACCTAGGCCCTGGTCGTGCG
64 AACCTAGGCCCTGGTCGTGCG
* * *
183390844 GGAGCCTCGGGCACCATC-GCACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGG-ACCATCGGC-A
1 GGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
183390906 CCTAGGCCCTGGTCGTGCG
66 CCTAGGCCCTGGTCGTGCG
* * ** * *
183390925 GGAGCCTCGGGCACCATCGG-CCCTTGGTGCTTGGAT-GTGCGGGAGACT-GGGACACCATCGGT
1 GGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG-CACCATCGGC
* *
183390987 AACCTAGGCCCTAGTCTTGCG
64 AACCTAGGCCCTGGTCGTGCG
* ** * **
183391008 GGAGCCTCGGGCACCATC--ACACCTTGGTGCTTGGAT-ATGCGGGAG-CTCGGAAACCATCGGC
1 GGAGCCTCGGGCACCATCGGA-ACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC
*
183391069 AACCTAGGCCCTTGGTCGTGCC
64 AACCTAGGCCC-TGGTCGTGCG
*
183391091 GGAGCCTCGGGCACCATCGGTACCTAGGCCCTTGGTCGT--GGG-GCCTCGGGCACCATCG
1 GGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
183391149 CACCTTGATG
Statistics
Matches: 490, Mismatches: 42, Indels: 53
0.84 0.07 0.09
Matches are distributed among these distances:
80 3 0.01
81 64 0.13
82 51 0.10
83 159 0.32
84 140 0.29
85 67 0.14
86 6 0.01
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (84 bp):
GGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
CCTAGGCCCTGGTCGTGCG
Found at i:183390751 original size:167 final size:167
Alignment explanation
Indices: 183390507--183391148 Score: 753
Period size: 167 Copynumber: 3.9 Consensus size: 167
183390497 TGGATATGCA
* *
183390507 GGAGCCTCGGACACCATCGGTAACCTAGG-CCTTGGTCGT-GCGGGAAGCCTCGGGCACCATCGA
1 GGAGCCTCGGACACCATC-G-AACCTAGGCCCCTGGTCGTAGC-GGAA-CCTC-GGCACCATCGG
* *
183390570 CAACCTAGGCCCTTGGTCTTGC-GGAGCCTCAGGCACCATCGGAACCTAGGCCCTTGGTCGTGCG
61 CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCG
183390634 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCG
126 GGAGCCTCGGGCACCATCGGTAACCTAGG-CCCTGGTCGTGCG
*
183390677 GGAGCCTCAGACACCATCGAACCTAGGCCCCTGGTCGTAG-GGAACTCTCGGCACCATCGGCAAC
1 GGAGCCTCGGACACCATCGAACCTAGGCCCCTGGTCGTAGCGGAAC-CTCGGCACCATCGGCAAC
* *
183390741 CTAGGCCCTTGGTCGTGCGGGAGCCTC-GG-ACCATCGGCAACCTAGGCCCCTGATCGTGCGGGA
65 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGA
*
183390804 GCCTCGGGCACCATCGGCAAACCTAGGCCCTGGTCGTGCG
129 GCCTCGGGCACCATCGG-TAACCTAGGCCCTGGTCGTGCG
* * * *
183390844 GGAGCCTCGGGCACCATCGCACCTAGGCCCCTGGTCGT-GCGAGAGCCTCGGGACCATCGGC-AC
1 GGAGCCTCGGACACCATCGAACCTAGGCCCCTGGTCGTAGCG-GAACCTCGGCACCATCGGCAAC
* * **
183390907 CTAGGCCC-TGGTCGTGCGGGAGCCTCGGGCACCATCGG-CCCTTGGTGCTTGGAT-GTGCGGGA
65 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
183390969 GACT-GGGACACCATCGGTAACCTAGGCCCTAGTCTTGCG
129 GCCTCGGG-CACCATCGGTAACCTAGGCCCTGGTCGTGCG
* * ** * * * * *
183391008 GGAGCCTCGGGCACCATC-ACACCTTGGTGCTTGG--ATATGCGGGAGCTCGGAAACCATCGGCA
1 GGAGCCTCGGACACCATCGA-ACCTAGGCCCCTGGTCGTA-GCGGAACCTCGG-CACCATCGGCA
* *
183391070 ACCTAGGCCCTTGGTCGTGCCGGAGCCTCGGGCACCATCGGTACCTAGGCCCTTGGTCGT--GGG
63 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGG
183391133 -GCCTCGGGCACCATCG
128 AGCCTCGGGCACCATCG
183391149 CACCTTGATG
Statistics
Matches: 413, Mismatches: 38, Indels: 48
0.83 0.08 0.10
Matches are distributed among these distances:
162 1 0.00
163 6 0.01
164 73 0.18
165 62 0.15
166 52 0.13
167 157 0.38
168 34 0.08
169 10 0.02
170 18 0.04
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (167 bp):
GGAGCCTCGGACACCATCGAACCTAGGCCCCTGGTCGTAGCGGAACCTCGGCACCATCGGCAACC
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGC
CTCGGGCACCATCGGTAACCTAGGCCCTGGTCGTGCG
Found at i:183399170 original size:58 final size:58
Alignment explanation
Indices: 183399090--183399199 Score: 184
Period size: 58 Copynumber: 1.9 Consensus size: 58
183399080 CCCAAAAGGT
*
183399090 AGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAACCGTCCCAAAGCA
1 AGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCGTCCCAAAGCA
* * *
183399148 AGAATTCAGATACCGTTGCATGTTCGGTATCCAACAATGAATGAATCGTCCC
1 AGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCGTCCC
183399200 TGTCCCTCCC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 48 1.00
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.25
Consensus pattern (58 bp):
AGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCGTCCCAAAGCA
Found at i:183399986 original size:43 final size:43
Alignment explanation
Indices: 183399952--183401409 Score: 1557
Period size: 43 Copynumber: 34.4 Consensus size: 43
183399942 TGGATATGCA
* *
183399952 GGAGCCTCGGACACCATCAGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
183399995 GGAGCCTCGGACACGATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
183400038 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * *
183400081 AGAGCCTCGGGCACCGTCGGCAACCTAGGCCCCTGGTCGTACG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
183400124 GGAGCCTCAGACACCATCGG-AACCTAGGCCC-TGGTCGTGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
183400165 AGAG-CTCAGAC-CCATCGGCAACCTAGGCCC-TGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
183400205 GGAGCCTCGG--ACCATCGGCAACCTAGGCCC-TGGTCGTGTG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
183400245 GGAGCCTCGGGCACCATCGACAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
183400288 GGAGCCTCGGGCACCATCGAC-ACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
183400330 AGAGCCTCGGGCACCATCGGC-ACCTAGG-CCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
183400371 AGAGCCTCGGA-ACCATCGGC-A-CTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * ***
183400411 GGAGCCTCGGGCTCCATCGG-GACCTTGATGCTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * * *
183400453 GGAGCCTGGGACACTATCGGTAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
** * **
183400496 GGAGCCTCGGGTACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * *
183400538 GGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCATGCC
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
183400581 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * *
183400624 GGAGCATCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGG-CCCTTGG-TCGTGCG
* * * * **
183400667 AGAGCCTC-GAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * * *
183400709 GGAGCCTCGGAGACCATAGGCAACCTAGGACGTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * * * * * *
183400752 GGTGGCTC-GAGCAACATCGGC-ACCTTGGTGCCTTGGAT-ATGCA
1 GGAGCCTCGGA-CACCATCGGCAACCTAGG-CCCTTGG-TCGTGCG
183400795 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
183400838 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
183400881 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
183400924 AGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * **
183400967 GGAGCCTCAGACACCATCGG-AACCTAGGCCCCTGGTCGTGAA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
183401009 GGAG-CTCAGACACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
183401051 GGAGCCTC-GAGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
183401094 GGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGTG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * *
183401137 AGAGCTTCGGGCACCATCGGTACCCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
183401180 AGAGCCTCGG-GACCACCGGC-ACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * ** *
183401221 GGAGCTTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTCCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * * *
183401263 GGAGCCTGGGACACCATCGGTAACCTAGGCCCCTGGTCGTGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * **
183401306 GGAGCCTTGGGCACCATCGGC-ACCTTGGTACTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * *
183401348 GGAGCCTAGGACACCATCGGCAACCTAGTCCCTTGGTCGTGCC
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
183401391 GGAGTCTCGGGCACCATCG
1 GGAGCCTCGGACACCATCG
183401410 TAGGATTTCG
Statistics
Matches: 1214, Mismatches: 164, Indels: 74
0.84 0.11 0.05
Matches are distributed among these distances:
39 12 0.01
40 100 0.08
41 88 0.07
42 314 0.26
43 690 0.57
44 10 0.01
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (43 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:183404137 original size:29 final size:28
Alignment explanation
Indices: 183404103--183404205 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
183404093 TAATCGTTCA
183404103 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATGT-ATTTAAGCT
* **
183404132 CGCACACATAGTGCCA-GATAGTCCAAGCT
1 CGCACACTTAGTGCCATG-TA-TTTAAGCT
**
183404161 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCATGTATTT-AAGCT
*
183404190 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
183404206 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.23
Consensus pattern (28 bp):
CGCACACTTAGTGCCATGTATTTAAGCT
Found at i:183412216 original size:29 final size:28
Alignment explanation
Indices: 183412182--183412284 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
183412172 TAATCGTTCA
183412182 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATGT-ATTTAAGCT
* **
183412211 CGCACACATAGTGCCA-GATAGTCCAAGCT
1 CGCACACTTAGTGCCATG-TA-TTTAAGCT
**
183412240 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCATGTATTT-AAGCT
*
183412269 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
183412285 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.23
Consensus pattern (28 bp):
CGCACACTTAGTGCCATGTATTTAAGCT
Found at i:183416535 original size:29 final size:28
Alignment explanation
Indices: 183416501--183416603 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 28
183416491 TAATCGATCA
*
183416501 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
*
183416530 CGCACACATAGTGCCATATAATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
183416559 CGCACACTTAGTGCCA-TACATTTCAAGCT
1 CGCACACTTAGTGCCATTA-ATTT-AAGCT
*
183416588 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
183416604 ATCTCGTCAC
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 2 0.03
28 4 0.06
29 61 0.91
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATTAATTTAAGCT
Found at i:183422146 original size:58 final size:59
Alignment explanation
Indices: 183422054--183422168 Score: 180
Period size: 58 Copynumber: 2.0 Consensus size: 59
183422044 TCCCTCCCCA
* *
183422054 ATCCCAAAAGGTAGAATCTAGATACCGTTACATGTTCGGTACCCAATAATGAATGAACC
1 ATCCCAAAAGCTAGAATCTAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACC
*
183422113 ATCCC-AAAGCTAGAAT-TCAGATACCGTTGCATGTTCGGTACCCAACAATGAATGAA
1 ATCCCAAAAGCTAGAATCT-AGATACCGTTACATGTTCGGTACCCAACAATGAATGAA
183422169 TCGTCCCTGT
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
57 1 0.02
58 46 0.88
59 5 0.10
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (59 bp):
ATCCCAAAAGCTAGAATCTAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACC
Found at i:183423034 original size:42 final size:43
Alignment explanation
Indices: 183422931--183423679 Score: 798
Period size: 43 Copynumber: 17.7 Consensus size: 43
183422921 TAGATATGCA
* *
183422931 GGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
183422974 GGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTG-G
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
183423016 AGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
183423059 GGAGCCTCAGACACCATCGG-AACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
183423101 GGAG-CTTGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
183423143 GGAGCCTCGGG-ACCATCGGTAAACTAGGCCCCTAGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
183423185 GGAGCCTCAGGCACCATCGGCAACCTAGGCCCCTAGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * **
183423228 GGATG-CTTGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGAA
1 GGA-GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
183423271 AGAGCCTCGGGCACCATCAGCACCCTAAGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
183423314 AGAGCCTCAGG-ACCATC-G-ATACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCA-ACCTAGGCCCTTGGTCGTGCG
* **
183423355 GGAGCCTC-GGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * *
183423396 GGAGCCT-GGGACACCATCGGTAACCTAGGCCCCTGGTCGTGCT
1 GGAGCCTCGGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* **
183423439 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * *
183423481 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCC
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
183423524 GGAGCCTCGGGCACCATC-GTAACCTAGGCCCTTGGTCGCGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
183423566 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCG
* * * * **
183423609 GGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* *
183423651 GGAGCCTCGGACACCATAGGCAACCTAGG
1 GGAGCCTCGGGCACCATCGGCAACCTAGG
183423680 ACGCTGGATG
Statistics
Matches: 603, Mismatches: 80, Indels: 46
0.83 0.11 0.06
Matches are distributed among these distances:
40 3 0.00
41 71 0.12
42 254 0.42
43 270 0.45
44 5 0.01
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (43 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:183423039 original size:85 final size:86
Alignment explanation
Indices: 183422932--183423679 Score: 775
Period size: 85 Copynumber: 8.8 Consensus size: 86
183422922 AGATATGCAG
* * *
183422932 GAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGACAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
*
183422997 CCTAGGCCCTTGGTCGTG-GA
66 CCTAGGCCCCTGGTCGTGCGA
* * *
183423017 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGACACCATCGG-AA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
*
183423081 CCTAGGCCCCTGGTCGTGCGG
66 CCTAGGCCCCTGGTCGTGCGA
* * * *
183423102 GAG-CTTGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGG-ACCATCGGTAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
* * *
183423165 ACTAGGCCCCTAGTCGTGCGG
66 CCTAGGCCCCTGGTCGTGCGA
* * * *
183423186 GAGCCTCAGGCACCATCGGCAACCTAGGCCCCTAGTCGTGCGGGATG-CTTGGGCACCATCGGCA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA-GCCTCGGGCACCATCGGCA
* **
183423250 CCCTAGGCCCCTGGTCGTGAAA
65 ACCTAGGCCCCTGGTCGTGCGA
* * * * *
183423272 GAGCCTCGGGCACCATCAGCACCCTAAGCCCTTGGTCGTGCGAGAGCCTCAGG-ACCATC-G-AT
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA-
* *
183423334 ACCTAGGCCCTTGGTCGTGCGG
65 ACCTAGGCCCCTGGTCGTGCGA
* ** *
183423356 GAGCCTC-GGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCT-GGGACACCATCGGT
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG-CACCATCGGC
183423417 AACCTAGGCCCCTGGTCGTGCTG-
64 AACCTAGGCCCCTGGTCGTGC-GA
* ** *
183423440 GAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCA
* *
183423503 ACCTAGGCCCTTGGTCATGCCG-
65 ACCTAGGCCCCTGGTCGTG-CGA
* *
183423525 GAGCCTCGGGCACCATC-GTAACCTAGGCCCTTGGTCGCGCGGGAGCCTCGGGCACCATCGGC-A
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
* **
183423588 CCTTGGTGCCTCGGAT-GTGC-A
66 CCTAGGCCCCT-GG-TCGTGCGA
* * * * ** * *
183423609 GGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATAGGC
1 -GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC
183423672 AACCTAGG
64 AACCTAGG
183423680 ACGCTGGATG
Statistics
Matches: 563, Mismatches: 75, Indels: 49
0.82 0.11 0.07
Matches are distributed among these distances:
81 2 0.00
82 20 0.04
83 27 0.05
84 151 0.27
85 283 0.50
86 80 0.14
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.18
Consensus pattern (86 bp):
GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
CCTAGGCCCCTGGTCGTGCGA
Found at i:183429376 original size:27 final size:28
Alignment explanation
Indices: 183429320--183429389 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
183429310 AAACTTGTAC
183429320 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
183429348 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
183429375 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
183429390 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:183429400 original size:27 final size:27
Alignment explanation
Indices: 183429320--183429401 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
183429310 AAACTTGTAC
* *
183429320 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
183429348 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
183429375 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
183429402 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:183437377 original size:27 final size:28
Alignment explanation
Indices: 183437321--183437390 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
183437311 AAACTTGTAC
*
183437321 AGCACTAAGTGTACGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
183437349 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
183437376 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
183437391 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.60
28 16 0.40
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:183437401 original size:27 final size:27
Alignment explanation
Indices: 183437345--183437402 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
183437335 GAGTTTGATC
* * *
183437345 ATATAGCACTAAGTGTGCGAGTTGATT
1 ATATAGCACTAAGTGTGCGAGCTCACT
183437372 ATATAGCACTAAGTGTGCG-GACTCACT
1 ATATAGCACTAAGTGTGCGAG-CTCACT
183437399 ATAT
1 ATAT
183437403 GCTTTTGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (27 bp):
ATATAGCACTAAGTGTGCGAGCTCACT
Found at i:183443226 original size:42 final size:43
Alignment explanation
Indices: 183443135--183443281 Score: 133
Period size: 43 Copynumber: 3.4 Consensus size: 43
183443125 AACACTGACA
* **
183443135 TCCCAGAC-GTGGTCTTACATGTAATTCAATATCGATGCCTCTG
1 TCCCAGACAG-GGTCTTACATGTAAATCAATATCGATGCCGATG
183443178 TCCCAGACAGGGTCTTACATG-AAATCAGATA-CGATGCCGATG
1 TCCCAGACAGGGTCTTACATGTAAATCA-ATATCGATGCCGATG
* * * * *
183443220 TCCCAGACATGGTCTTATACGTAAATCTCA-ATCGAGGCCTG-TG
1 TCCCAGACAGGGTCTTACATGTAAATC-AATATCGATGCC-GATG
* *
183443263 TCCTAGACACGGTCTTACA
1 TCCCAGACAGGGTCTTACA
183443282 CGATATCTCA
Statistics
Matches: 87, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
42 33 0.38
43 52 0.60
44 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (43 bp):
TCCCAGACAGGGTCTTACATGTAAATCAATATCGATGCCGATG
Found at i:183455358 original size:40 final size:40
Alignment explanation
Indices: 183455313--183455467 Score: 231
Period size: 40 Copynumber: 3.9 Consensus size: 40
183455303 GGAGATAGCT
*
183455313 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
** * *
183455353 ACTCGCGGAATTGCCTTCGGGACTTGGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
183455393 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
**
183455433 ACTCAAACAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
183455468 CAATCCGAAT
Statistics
Matches: 103, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 13 0.13
40 90 0.87
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:183463336 original size:40 final size:40
Alignment explanation
Indices: 183463255--183463474 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
183463245 AAACCAAGTA
** * *
183463255 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
183463294 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
183463334 CCTTC-GGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
183463373 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
183463413 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
183463453 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
183463475 CAATCCGAAT
Statistics
Matches: 168, Mismatches: 10, Indels: 6
0.91 0.05 0.03
Matches are distributed among these distances:
39 65 0.39
40 103 0.61
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:183463390 original size:79 final size:80
Alignment explanation
Indices: 183463255--183463474 Score: 340
Period size: 79 Copynumber: 2.8 Consensus size: 80
183463245 AAACCAAGTA
** *
183463255 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
*
183463318 GTAACTCGCACAATTG
65 GTAACTCGCACAAATG
* * *
183463334 CCTTC-GGACTTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
183463398 TAACTCGCACAAATG
66 TAACTCGCACAAATG
183463413 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
183463475 CAATCCGAAT
Statistics
Matches: 128, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
78 7 0.05
79 81 0.63
80 40 0.31
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.27
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:183472240 original size:17 final size:18
Alignment explanation
Indices: 183472198--183472246 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
183472188 AGTTGAAAAG
183472198 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
183472217 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
183472234 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
183472247 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:183473135 original size:40 final size:39
Alignment explanation
Indices: 183473069--183473234 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
183473059 AAATTGAATG
* * *
183473069 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGG-TATT
* * **
183473108 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
*
183473147 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-G-TATT
* * **
183473187 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT-ATT
183473227 ATATCCGG
1 ATATCCGG
183473235 TTATATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
Found at i:183476569 original size:43 final size:42
Alignment explanation
Indices: 183476521--183476757 Score: 251
Period size: 43 Copynumber: 5.5 Consensus size: 42
183476511 CAATGCCAAT
* *
183476521 GTCCCAGATGTGGTCTTACATGTAATCACATATCGATGCCAC
1 GTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAC
* * * *
183476563 TATCCCAGACAG-GGTCTTCCACGTAATCACATATCAATGTCAAC
1 -GTCCCAGAC-GTGGTCTTACACGTAATCACATATCGATG-CCAC
* * *
183476607 GTCCCAAACATGGTCTTACATGTAATCACATATCGATGCCAAC
1 GTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCC-AC
* * * *
183476650 GTCCCAGACGTGGCCTTAGACATAGTCACATATCGATGCCAAC
1 GTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCC-AC
* * *
183476693 GTCCCAGACGTGGTCTTACACATAATCATATATCGATGACAAC
1 GTCCCAGACGTGGTCTTACACGTAATCACATATCGATG-CCAC
* *
183476736 GTCTCAGACGTGGCCTTACACG
1 GTCCCAGACGTGGTCTTACACG
183476758 CACACACATA
Statistics
Matches: 161, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
42 1 0.01
43 155 0.96
44 5 0.03
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (42 bp):
GTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAC
Found at i:183476754 original size:129 final size:129
Alignment explanation
Indices: 183476513--183476755 Score: 301
Period size: 129 Copynumber: 1.9 Consensus size: 129
183476503 ATATTATACA
* * * **
183476513 ATGCCAATGTCCCAGATGTGGTCTTACATGTAATCACATATCGATGCCACTATCCCAGACAGGGT
1 ATGCCAACGTCCCAGACGTGGCCTTACACATAATCACATATCGATGCCACTATCCCAGACAGGGT
* * * *
183476578 CTTCCACGTAATCACATATCAATGTCAACGTCCCAAACATGGTCTTACATGTAATCACATATCG
66 CTTACACATAATCACATATCAATGACAACGTCCCAAACATGGCCTTACATGTAATCACATATCG
* * *
183476642 ATGCCAACGTCCCAGACGTGGCCTTAGACATAGTCACATATCGATGCCAAC-GTCCCAGAC-GTG
1 ATGCCAACGTCCCAGACGTGGCCTTACACATAATCACATATCGATGCC-ACTATCCCAGACAG-G
* * * * *
183476705 GTCTTACACATAATCATATATCGATGACAACGTCTCAGACGTGGCCTTACA
64 GTCTTACACATAATCACATATCAATGACAACGTCCCAAACATGGCCTTACA
183476756 CGCACACACA
Statistics
Matches: 95, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
128 1 0.01
129 92 0.97
130 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (129 bp):
ATGCCAACGTCCCAGACGTGGCCTTACACATAATCACATATCGATGCCACTATCCCAGACAGGGT
CTTACACATAATCACATATCAATGACAACGTCCCAAACATGGCCTTACATGTAATCACATATCG
Found at i:183476766 original size:86 final size:84
Alignment explanation
Indices: 183476511--183476768 Score: 284
Period size: 86 Copynumber: 3.0 Consensus size: 84
183476501 ACATATTATA
* * * *
183476511 CAATGCCAATGTCCCAGATGTGGTCTTACATGTAATCACATATCGATGCCACTATCCCAGACAG-
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCAAC-GTCCCAGAC-GT
* *
183476575 GGTCTTCCACGTAATCACATAT
64 GGCCTTACACGTAA-CACATAT
* * *
183476597 CAATGTCAACGTCCCAAACATGGTCTTACATGTAATCACATATCGATGCCAACGTCCCAGACGTG
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATG-CAACGTCCCAGACGTG
* * *
183476662 GCCTTAGACATAGTCACATAT
65 GCCTTACACGTA-ACACATAT
* ** * *
183476683 CGATGCCAACGTCCCAGACGTGGTCTTACACATAATCATATATCGATGACAACGTCTCAGACGTG
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATG-CAACGTCCCAGACGTG
*
183476748 GCCTTACACGCACACACATAT
65 GCCTTACACGTA-ACACATAT
183476769 ATCATTTTAA
Statistics
Matches: 143, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
85 1 0.01
86 139 0.97
87 3 0.02
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (84 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCAACGTCCCAGACGTGG
CCTTACACGTAACACATAT
Found at i:183481231 original size:93 final size:93
Alignment explanation
Indices: 183481119--183481290 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
183481109 GCCCATAAGT
* *
183481119 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
183481184 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
183481212 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
183481277 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
183481291 CAAACATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:183481286 original size:46 final size:46
Alignment explanation
Indices: 183481111--183481286 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
183481101 TGTAACCCGC
* *
183481111 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
183481157 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
183481203 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
183481250 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
183481287 TGCCCAAACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:183487692 original size:46 final size:46
Alignment explanation
Indices: 183487642--183487816 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
183487632 TGGTTGAGCA
183487642 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
183487688 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
183487733 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
183487781 -CCTGAGCTCGTTGAGTTGAGT-CGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
183487817 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 9, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 19 0.17
46 47 0.43
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:183487798 original size:93 final size:92
Alignment explanation
Indices: 183487639--183487809 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 92
183487629 GGATGGTTGA
*
183487639 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
183487704 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGT-CGAGTTCGTGAGATGTAACTAG
* *
183487732 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
183487796 TTGAGTCGAGTTCG
65 TTGAGTCGAGTTCG
183487810 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
92 10 0.14
93 64 0.86
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCGAGTTCGTGAGATGTAACTAG
Found at i:183490079 original size:15 final size:15
Alignment explanation
Indices: 183490059--183490127 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
183490049 GTATCTTGGG
183490059 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
183490074 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
183490089 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
183490104 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
183490119 TTTCTTTAT
1 TTTCTTTAT
183490128 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:183490128 original size:30 final size:30
Alignment explanation
Indices: 183490050--183490137 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
183490040 CATAATATCG
* * * *
183490050 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
183490080 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
183490110 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
183490138 TATTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:183492571 original size:46 final size:45
Alignment explanation
Indices: 183492521--183492694 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
183492511 TGTTTGGGCA
*
183492521 TCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
183492567 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
183492614 TCCGAGCTCCTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
183492659 CCCGAGCTCGTTGAGTTGAGTCC-AGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
183492695 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 2 0.02
44 14 0.13
45 22 0.21
46 32 0.30
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:183496420 original size:43 final size:42
Alignment explanation
Indices: 183496374--183496610 Score: 260
Period size: 43 Copynumber: 5.5 Consensus size: 42
183496364 CAATGCCAAT
* *
183496374 GTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCAC
1 GTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCAAC
* *
183496416 TGTCCCAGACAG-GGCCTTACATGTAATCACATATCGATGTCAAC
1 -GTCCCAGAC-GTGGTCTTACACGTAATCACATATCGATG-CAAC
* * *
183496460 ATCCCAGACATGGTCTTACACGTAATCACATATTGATGGCAAC
1 GTCCCAGACGTGGTCTTACACGTAATCACATATCGAT-GCAAC
* * *
183496503 GTCCCAGACGTGGTCTTATACATAGTCACATATCGATGCGAAC
1 GTCCCAGACGTGGTCTTACACGTAATCACATATCGATGC-AAC
* * * * *
183496546 GTCCCAGACATGGTATTACACGTAATCAGATATCAATGTGAAC
1 GTCCCAGACGTGGTCTTACACGTAATCACATATCGATG-CAAC
* *
183496589 GTCTCAGATGTGGTCTTACACG
1 GTCCCAGACGTGGTCTTACACG
183496611 CACACACATA
Statistics
Matches: 163, Mismatches: 25, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
42 2 0.01
43 156 0.96
44 5 0.03
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (42 bp):
GTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCAAC
Found at i:183496604 original size:129 final size:129
Alignment explanation
Indices: 183496374--183496610 Score: 314
Period size: 129 Copynumber: 1.8 Consensus size: 129
183496364 CAATGCCAAT
** * * *
183496374 GTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAGGGCCTTACATG
1 GTCCCAGACGTGGTCTTACACATAATCACATATCGATGCAACTGTCCCAGACAGGGCATTACACG
*
183496439 TAATCACATATCGATGTCAACATCCCAGACATGGTCTTACACGTAATCACATATTGATGGCAAC
66 TAATCACATATCAATGTCAACATCCCAGACATGGTCTTACACGTAATCACATATTGATGGCAAC
* * * *
183496503 GTCCCAGACGTGGTCTTATACATAGTCACATATCGATGCGAAC-GTCCCAGACATGGTATTACAC
1 GTCCCAGACGTGGTCTTACACATAATCACATATCGATGC-AACTGTCCCAGACAGGGCATTACAC
* * * * **
183496567 GTAATCAGATATCAATGTGAACGTCTCAGATGTGGTCTTACACG
65 GTAATCACATATCAATGTCAACATCCCAGACATGGTCTTACACG
183496611 CACACACATA
Statistics
Matches: 91, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
129 89 0.98
130 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (129 bp):
GTCCCAGACGTGGTCTTACACATAATCACATATCGATGCAACTGTCCCAGACAGGGCATTACACG
TAATCACATATCAATGTCAACATCCCAGACATGGTCTTACACGTAATCACATATTGATGGCAAC
Found at i:183505322 original size:27 final size:28
Alignment explanation
Indices: 183505292--183505361 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
183505282 ATAGTGAATC
*
183505292 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
183505319 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
183505347 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
183505362 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:183513697 original size:27 final size:26
Alignment explanation
Indices: 183513649--183513708 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
183513639 GCGAAGCTGC
*
183513649 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
183513676 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
183513702 CAGATAT
1 CAGATAT
183513709 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:183513712 original size:2 final size:2
Alignment explanation
Indices: 183513705--183513738 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
183513695 ACCAGAACAG
183513705 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
183513739 GCGGCGAAGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:183513817 original size:27 final size:26
Alignment explanation
Indices: 183513771--183513822 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
183513761 GTGAGGCTGC
183513771 TAGATATTGTGACGAAGTCACCAGAA
1 TAGATATTGTGACGAAGTCACCAGAA
* *
183513797 TAGATATATGTGGCGAGGTCACCAGA
1 TAGATAT-TGTGACGAAGTCACCAGA
183513823 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (26 bp):
TAGATATTGTGACGAAGTCACCAGAA
Found at i:183520670 original size:24 final size:24
Alignment explanation
Indices: 183520638--183520724 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
183520628 AATCTCAAAT
183520638 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
183520662 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
183520686 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
183520710 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
183520725 ACACAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:183520690 original size:48 final size:48
Alignment explanation
Indices: 183520638--183520746 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
183520628 AATCTCAAAT
** *
183520638 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTAT-A
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGA-ACACAATAA
183520686 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACACAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACACAATAA
183520734 GCACTATGTGTGC
1 GCACTATGTGTGC
183520747 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
47 4 0.07
48 53 0.93
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACACAATAA
Found at i:183520737 original size:24 final size:24
Alignment explanation
Indices: 183520638--183520746 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
183520628 AATCTCAAAT
*
183520638 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
183520662 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
183520686 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
183520710 GCACTATGTGTGCGA-ACACAATAA
1 GCACTATGTGTGCGATTTACTAT-A
183520734 GCACTATGTGTGC
1 GCACTATGTGTGC
183520747 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
23 4 0.05
24 74 0.95
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:183528512 original size:24 final size:24
Alignment explanation
Indices: 183528480--183528566 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
183528470 AATCTCAAAT
183528480 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
183528504 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
183528528 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
183528552 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
183528567 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:183528532 original size:48 final size:48
Alignment explanation
Indices: 183528480--183528588 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
183528470 AATCTCAAAT
** *
183528480 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
183528528 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
183528576 GCACTATGTGTGC
1 GCACTATGTGTGC
183528589 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:183528579 original size:24 final size:24
Alignment explanation
Indices: 183528480--183528588 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
183528470 AATCTCAAAT
*
183528480 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
183528504 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
183528528 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
183528552 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
183528576 GCACTATGTGTGC
1 GCACTATGTGTGC
183528589 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:183530520 original size:29 final size:29
Alignment explanation
Indices: 183530448--183530512 Score: 130
Period size: 29 Copynumber: 2.2 Consensus size: 29
183530438 GTGACGAGAT
183530448 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
183530477 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
183530506 TGGCACT
1 TGGCACT
183530513 GGGTGTGCGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:183539608 original size:24 final size:24
Alignment explanation
Indices: 183539576--183539662 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
183539566 AATCTCAAAT
183539576 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
183539600 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
183539624 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
183539648 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
183539663 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:183539628 original size:48 final size:48
Alignment explanation
Indices: 183539576--183539684 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
183539566 AATCTCAAAT
** *
183539576 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
183539624 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
183539672 GCACTATGTGTGC
1 GCACTATGTGTGC
183539685 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:183539675 original size:24 final size:24
Alignment explanation
Indices: 183539576--183539684 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
183539566 AATCTCAAAT
*
183539576 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
183539600 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
183539624 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
183539648 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
183539672 GCACTATGTGTGC
1 GCACTATGTGTGC
183539685 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:183547759 original size:41 final size:41
Alignment explanation
Indices: 183547714--183547831 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
183547704 TGAAAGATAA
183547714 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
183547755 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
183547785 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
183547826 ATGTAG
1 ATGTAG
183547832 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:183547770 original size:71 final size:71
Alignment explanation
Indices: 183547682--183547845 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
183547672 GAGATGTATC
183547682 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
183547747 AGGACA
66 AGGACA
183547753 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
183547818 AGGACA
66 AGGACA
183547824 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
183547846 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:183552161 original size:27 final size:27
Alignment explanation
Indices: 183552130--183552221 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 27
183552120 AGCGAAGCTG
183552130 CCAGTAACAGTATATGTGGCAAAGCCA
1 CCAGTAACAGTATATGTGGCAAAGCCA
* *
183552157 CCAGTATCAATATATGTGGCAAAGCCA
1 CCAGTAACAGTATATGTGGCAAAGCCA
* *
183552184 CCGGTAACAGTA-ATTGTGGCAGAGCCA
1 CCAGTAACAGTATA-TGTGGCAAAGCCA
183552211 CCAGT-ACAGTA
1 CCAGTAACAGTA
183552222 CTTCCTCCAA
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
26 7 0.12
27 50 0.88
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
CCAGTAACAGTATATGTGGCAAAGCCA
Found at i:183567813 original size:29 final size:27
Alignment explanation
Indices: 183567779--183567881 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
183567769 TACTCAATCA
*
183567779 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
183567808 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
183567837 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
183567866 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
183567882 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:183572327 original size:17 final size:18
Alignment explanation
Indices: 183572285--183572333 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
183572275 AGTTGAAAAG
183572285 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
183572304 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
183572321 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
183572334 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:183573221 original size:40 final size:40
Alignment explanation
Indices: 183573155--183573321 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
183573145 AAATTGAATG
* * *
183573155 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
183573194 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
183573234 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
183573274 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
183573314 ATATCCGG
1 ATATCCGG
183573322 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Done.