Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 587 of 770
Found at i:183581214 original size:39 final size:39
Alignment explanation
Indices: 183581121--183581461 Score: 517
Period size: 39 Copynumber: 8.8 Consensus size: 39
183581111 GCAAGACACT
* *
183581121 GAAATGTATCCGAGCCAAAGTCCCGCAGGCTTCGTGCT-
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
*
183581159 G-AATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
*
183581197 GAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
* *
183581236 GAAATATATCCGGGCTAAAGTCCCACAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
* * *
183581275 GAAATATATCCAGGCCAAA-TCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
* *
183581313 GAAATGTATCCGGACTAAAGTCCCGCAAGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
* * *
183581352 GAAATGTATCTGGGCCAAAGTCCCGCAGGCTTCGTACTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
*
183581391 GAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
*
183581430 GAAATGTATCCGGGTTAAAGTCCCGCAGGCTT
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTT
183581462 TATGCTAATA
Statistics
Matches: 277, Mismatches: 23, Indels: 5
0.91 0.08 0.02
Matches are distributed among these distances:
37 33 0.12
38 35 0.13
39 209 0.75
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (39 bp):
GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
Found at i:183583478 original size:40 final size:40
Alignment explanation
Indices: 183583419--183583560 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
183583409 AAATTGAATG
* * *
183583419 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
183583459 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
183583499 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
183583539 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
183583561 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:183583561 original size:40 final size:39
Alignment explanation
Indices: 183583458--183583586 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
183583448 TGCTGGAAAT
* * *
183583458 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
183583498 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
183583538 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
183583578 TATATCCGG
1 TATATCCGG
183583587 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:183591505 original size:40 final size:40
Alignment explanation
Indices: 183591446--183591587 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
183591436 AAATTGAATG
* * *
183591446 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
183591486 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
183591526 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
183591566 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
183591588 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:183591588 original size:40 final size:39
Alignment explanation
Indices: 183591485--183591613 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
183591475 TGCTGGAAAT
* * *
183591485 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
183591525 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
183591565 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
183591605 TATATCCGG
1 TATATCCGG
183591614 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:183597875 original size:39 final size:39
Alignment explanation
Indices: 183597817--183598194 Score: 620
Period size: 39 Copynumber: 9.8 Consensus size: 39
183597807 AAGACACTGA
*
183597817 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
183597856 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCT-G
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
183597894 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
183597933 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
183597972 AAATATATCCGGGCTAAAGT-CCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
183598010 AAATATATCC-GGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
183598048 AAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCT-G
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
183598086 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
183598125 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
183598164 AAATGTATTCGGGTTAAAGTCCCGTAGGCTT
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTT
183598195 TATTGATAAT
Statistics
Matches: 323, Mismatches: 12, Indels: 8
0.94 0.03 0.02
Matches are distributed among these distances:
37 8 0.02
38 128 0.40
39 187 0.58
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:183597913 original size:77 final size:78
Alignment explanation
Indices: 183597817--183598194 Score: 620
Period size: 77 Copynumber: 4.9 Consensus size: 78
183597807 AAGACACTGA
*
183597817 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCA
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCA
183597882 GGCTTCGTGCT-G
66 GGCTTCGTGCTGG
* *
183597894 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGCA
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCA
183597959 GGCTTCGTGCTGG
66 GGCTTCGTGCTGG
* * *
183597972 AAATATATCCGGGCTAAAGT-CCGCAGGCTTCGTGCTGGAAATATATCC-GGCCAAAGTCCCGCA
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCA
183598035 GGCTTCGTGCTGG
66 GGCTTCGTGCTGG
* *
183598048 AAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCT-GAAATGTATCCGGGCCAAAGTCCCGCA
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCA
183598112 GGCTTCGTGCTGG
66 GGCTTCGTGCTGG
* * * *
183598125 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATTCGGGTTAAAGTCCCGTA
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCA
183598190 GGCTT
66 GGCTT
183598195 TATTGATAAT
Statistics
Matches: 284, Mismatches: 13, Indels: 7
0.93 0.04 0.02
Matches are distributed among these distances:
76 55 0.19
77 180 0.63
78 49 0.17
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (78 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCA
GGCTTCGTGCTGG
Found at i:183598155 original size:192 final size:194
Alignment explanation
Indices: 183597817--183598194 Score: 652
Period size: 192 Copynumber: 2.0 Consensus size: 194
183597807 AAGACACTGA
* *
183597817 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCA
1 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGACTAAAGTCCCGCA
*
183597882 GGCTTCGTGCTGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGC
66 GGCTTCGTGCTGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGC
*
183597947 TAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCTAAAGT-CCGCAGGCTTCGTGCTGG
131 CAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
183598010 AAATATATCC-GGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGACTAAAGTCCCGCA
1 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGACTAAAGTCCCGCA
* *
183598074 GGCTTCGTGCTGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGC
66 GGCTTCGTGCTGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGC
* * * *
183598139 CAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATTCGGGTTAAAGTCCCGTAGGCTT
131 CAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTT
183598195 TATTGATAAT
Statistics
Matches: 174, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
192 156 0.90
193 18 0.10
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (194 bp):
AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGACTAAAGTCCCGCA
GGCTTCGTGCTGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGC
CAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:183603311 original size:39 final size:39
Alignment explanation
Indices: 183603245--183603588 Score: 547
Period size: 39 Copynumber: 9.0 Consensus size: 39
183603235 AAGACACTGA
183603245 AAATGTATCCGGGC-AAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
183603283 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
183603322 AAATATATCCAGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
183603361 AAATATATCCGGGCTAAAGTCCCACAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
183603400 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
183603439 AAATGTATCCGGACTAAAGTCCCACAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
183603478 AAATGTAT-CGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
183603516 AAATGTATCCGGG--AAAGTCCCGCAGGCTTCGTG-TGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
183603552 AAATGTATCCGGG-TTAAGTCCCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
183603589 ATAATATAAT
Statistics
Matches: 287, Mismatches: 15, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
36 16 0.06
37 38 0.13
38 51 0.18
39 182 0.63
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:183607495 original size:40 final size:39
Alignment explanation
Indices: 183607330--183607513 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
183607320 AAATTGAATG
* * *
183607330 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
183607370 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
183607410 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
183607450 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
183607489 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
183607514 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:183607538 original size:80 final size:81
Alignment explanation
Indices: 183607370--183607558 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
183607360 GCTGGAAATT
* * * *
183607370 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
183607435 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
183607451 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
183607514 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
183607530 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
183607559 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:183615613 original size:40 final size:39
Alignment explanation
Indices: 183615448--183615631 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
183615438 AAATTGAATG
* * *
183615448 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
183615488 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
183615528 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
183615568 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
183615607 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
183615632 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:183615656 original size:80 final size:81
Alignment explanation
Indices: 183615488--183615676 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
183615478 GCTGGAAATT
* * * *
183615488 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
183615553 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
183615569 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
183615632 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
183615648 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
183615677 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:183619537 original size:28 final size:27
Alignment explanation
Indices: 183619474--183619543 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
183619464 ATAGTGAGTC
183619474 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
183619501 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
183619529 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
183619544 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:183627415 original size:27 final size:27
Alignment explanation
Indices: 183627397--183627466 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
183627387 ATAGTGAGTC
183627397 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
183627424 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
*
183627452 CACACACTTAGTGCT
1 CGCACACTTAGTGCT
183627467 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 22 0.55
28 18 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:183631335 original size:2 final size:2
Alignment explanation
Indices: 183631328--183631359 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
183631318 AAATGGCATA
183631328 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
183631360 GTGTGAATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:183632012 original size:42 final size:41
Alignment explanation
Indices: 183631953--183632175 Score: 320
Period size: 42 Copynumber: 5.5 Consensus size: 41
183631943 TATTCGGATG
183631953 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GTAGTTGCT
183631995 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--GTAGTTGCT
183632038 ATA-CCGGGCTAAGTCCCGAAGGCATTTGTGC-TAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTG-CT
183632077 ATATCCGGGCTAAGTCCCGAAGGCA-TT-TGC-TAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTG-CT
*
183632115 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCG-AGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTGCT
*
183632155 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
183632176 ATACTTGGGT
Statistics
Matches: 171, Mismatches: 3, Indels: 17
0.90 0.02 0.09
Matches are distributed among these distances:
38 37 0.22
39 25 0.15
40 34 0.20
41 2 0.01
42 60 0.35
43 13 0.08
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTGCT
Found at i:183645402 original size:40 final size:40
Alignment explanation
Indices: 183645230--183645407 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
183645220 GAGTCACGTA
* * *
183645230 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAACAACTAGCACAAATG
* * * * *
183645269 CCTTCGGGTCTTAACCCAGATTTAGCAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAACAACTAGCACAAATG
* *
183645309 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAATG
1 CCTTCGGGTCTTAACCCGGATATAACAACTAGCACAAATG
* *
183645349 CCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAA-CAACTAGCACAAATG
* *
183645389 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
183645408 GTATCATTCA
Statistics
Matches: 119, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
38 1 0.01
39 12 0.10
40 105 0.88
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAACAACTAGCACAAATG
Found at i:183648218 original size:93 final size:93
Alignment explanation
Indices: 183648106--183648276 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
183648096 GCCCATAAGT
* *
183648106 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
183648171 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
183648199 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
183648264 CGAGTTCGGATGC
66 CGAGTTCGGATGC
183648277 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:183648273 original size:46 final size:46
Alignment explanation
Indices: 183648098--183648273 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
183648088 TGTAACCCGC
* * *
183648098 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
183648144 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
183648194 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
183648237 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
183648274 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:183650687 original size:30 final size:30
Alignment explanation
Indices: 183650643--183650731 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
183650633 CAAAGATAAC
183650643 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
183650672 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
183650702 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
183650732 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:183650691 original size:15 final size:15
Alignment explanation
Indices: 183650643--183650722 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
183650633 CAAAGATAAC
*
183650643 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
183650657 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
183650672 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
183650687 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
183650702 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
183650717 AAGAAA
1 AAGAAA
183650723 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:183650731 original size:15 final size:15
Alignment explanation
Indices: 183650654--183650731 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
183650644 AGAAAACCGA
183650654 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
183650669 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
183650683 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
183650698 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
183650714 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
183650729 ATA
1 ATA
183650732 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:183653790 original size:93 final size:93
Alignment explanation
Indices: 183653678--183653848 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
183653668 GCCCATAAGT
* *
183653678 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
183653743 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
183653771 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
183653836 CGAGTTCGGATGC
66 CGAGTTCGGATGC
183653849 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:183653845 original size:46 final size:46
Alignment explanation
Indices: 183653670--183653845 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
183653660 TGTAACCCGC
* * *
183653670 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
183653716 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
183653766 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
183653809 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
183653846 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:183654049 original size:29 final size:31
Alignment explanation
Indices: 183653984--183654052 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
183653974 TCAAGTATTC
*
183653984 ACATAATTTACATATTATAAATTAACCACAA
1 ACATAATTTACATAATATAAATTAACCACAA
* * *
183654015 AGCATAATTT-CATAATA-AAATTCAGCATAA
1 A-CATAATTTACATAATATAAATTAACCACAA
183654045 ACATAATT
1 ACATAATT
183654053 AAAAATAACT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 7 0.21
30 11 0.33
31 7 0.21
32 8 0.24
ACGTcount: A:0.51, C:0.14, G:0.03, T:0.32
Consensus pattern (31 bp):
ACATAATTTACATAATATAAATTAACCACAA
Found at i:183656326 original size:29 final size:29
Alignment explanation
Indices: 183656293--183656395 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
183656283 CCTCCGAACT
** * * *
183656293 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
183656322 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
183656351 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
183656380 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
183656396 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:183663261 original size:40 final size:40
Alignment explanation
Indices: 183663206--183663369 Score: 195
Period size: 40 Copynumber: 4.1 Consensus size: 40
183663196 TGAATAATAC
* *
183663206 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
183663246 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
183663286 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
183663326 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
183663366 CCGG
1 CCGG
183663370 TTAAATTTCG
Statistics
Matches: 103, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 100 0.97
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:183667138 original size:28 final size:28
Alignment explanation
Indices: 183667106--183667175 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
183667096 AATGAGATTG
*
183667106 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
183667134 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
183667162 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
183667176 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:183674989 original size:28 final size:28
Alignment explanation
Indices: 183674957--183675026 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
183674947 AATGAGATTG
*
183674957 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
183674985 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
183675013 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
183675027 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:183680790 original size:31 final size:31
Alignment explanation
Indices: 183680752--183680815 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
183680742 CCTTTTCATA
183680752 TTTCATATTTCATAACACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
** *
183680783 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
183680814 TT
1 TT
183680816 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:183681048 original size:24 final size:24
Alignment explanation
Indices: 183681027--183681148 Score: 210
Period size: 24 Copynumber: 5.1 Consensus size: 24
183681017 GCCTAGCCTC
*
183681027 TTTAATAACTGGGGCAAAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
*
183681051 TTTAACAACTGGGGCATAAGCCC-
1 TTTAATAACTGGGGCATAAGCCCT
*
183681074 TTTAATAACTGGGCCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
183681098 TTTAATAACTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
183681122 TTTAATAACTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
183681146 TTT
1 TTT
183681149 GCACTTCCTC
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
23 21 0.23
24 71 0.77
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.29
Consensus pattern (24 bp):
TTTAATAACTGGGGCATAAGCCCT
Found at i:183681079 original size:47 final size:47
Alignment explanation
Indices: 183681021--183681148 Score: 211
Period size: 47 Copynumber: 2.7 Consensus size: 47
183681011 CTGGAGGCCT
*
183681021 AGCCTCTTTAATAACTGGGGCAAAAGCCCTTTTAACAACTGGGGCATA
1 AGCC-CTTTAATAACTGGGGCATAAGCCCTTTTAACAACTGGGGCATA
* *
183681069 AGCCCTTTAATAACTGGGCCATAAGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTAATAACTGGGGCATAAGCCCTTTTAACAACTGGGGCATA
183681116 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
1 AGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
183681149 GCACTTCCTC
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 45 0.60
48 30 0.40
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (47 bp):
AGCCCTTTAATAACTGGGGCATAAGCCCTTTTAACAACTGGGGCATA
Found at i:183681226 original size:20 final size:20
Alignment explanation
Indices: 183681198--183681264 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
183681188 TTATGAATAC
183681198 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
183681218 ATCACGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
183681238 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
183681258 ACCATGT
1 ATCATGT
183681265 TTACTAAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.31
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:183683581 original size:123 final size:120
Alignment explanation
Indices: 183683362--183683581 Score: 298
Period size: 123 Copynumber: 1.8 Consensus size: 120
183683352 AATTATGTGG
* * * *
183683362 AATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATGATACCGGGCTA
1 AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATGATACCGGGCTA
* * * **
183683427 AGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 AGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
*
183683482 AATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCGG
1 AATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAATGATA-CCGG
*
183683546 GCTAAGCCCCGAAGACAATTATGCTGGAAATTATAA
62 GCTAAGCCCCGAAGACAATTATGCTAGAAATTATAA
183683582 CCGGGTTAAG
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
120 15 0.18
122 33 0.39
123 37 0.44
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (120 bp):
AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATGATACCGGGCTA
AGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:183683702 original size:40 final size:39
Alignment explanation
Indices: 183683538--183683720 Score: 129
Period size: 40 Copynumber: 4.6 Consensus size: 39
183683528 AAATTGAATG
* * *
183683538 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
183683578 ATAACCGGGTTAAGACCCGAAGG-AATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
183683617 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
183683657 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
183683696 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
183683721 CTTGGTGCGG
Statistics
Matches: 111, Mismatches: 26, Indels: 12
0.74 0.17 0.08
Matches are distributed among these distances:
36 4 0.04
37 2 0.02
38 2 0.02
39 22 0.20
40 81 0.73
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:183691804 original size:40 final size:39
Alignment explanation
Indices: 183691639--183691822 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
183691629 AAATTGAATG
* * *
183691639 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
183691679 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
183691719 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
183691759 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
183691798 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
183691823 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:183691847 original size:80 final size:81
Alignment explanation
Indices: 183691679--183691867 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
183691669 GCTGGAAATT
* * * *
183691679 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
183691744 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
183691760 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
183691823 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
183691839 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
183691868 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:183698105 original size:17 final size:18
Alignment explanation
Indices: 183698063--183698111 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
183698053 AGTTGAAAAG
183698063 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
183698082 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
183698099 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
183698112 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:183699000 original size:40 final size:40
Alignment explanation
Indices: 183698934--183699100 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
183698924 AAATTGAATG
* * *
183698934 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
183698973 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
183699013 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
183699053 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
183699093 ATATCCGG
1 ATATCCGG
183699101 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:183702939 original size:27 final size:28
Alignment explanation
Indices: 183702883--183702948 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 28
183702873 AAATTTGTAC
*
183702883 AGCACTAAGTGTGCAAGTTTGATCATAT
1 AGCACTAAGTGCGCAAGTTTGATCATAT
** *
183702911 AGCACTAAGTGCGTGAG-TTGATTATAT
1 AGCACTAAGTGCGCAAGTTTGATCATAT
183702938 AGCACTAAGTG
1 AGCACTAAGTG
183702949 TGCGGACTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 20 0.59
28 14 0.41
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGCGCAAGTTTGATCATAT
Found at i:183710026 original size:24 final size:24
Alignment explanation
Indices: 183709999--183710085 Score: 131
Period size: 24 Copynumber: 3.6 Consensus size: 24
183709989 GTCAGAAGAA
183709999 GATTTAGGAGCTGATAAGAGAGAG
1 GATTTAGGAGCTGATAAGAGAGAG
* *
183710023 GATTTAGAAGCTGATAAGGGAGAG
1 GATTTAGGAGCTGATAAGAGAGAG
*
183710047 GATTTAGGAGCTGATAA-AGGAGAA
1 GATTTAGGAGCTGATAAGA-GAGAG
183710071 GATTTAGGAGCTGAT
1 GATTTAGGAGCTGAT
183710086 CAATGAGCAG
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
24 57 1.00
ACGTcount: A:0.37, C:0.05, G:0.36, T:0.23
Consensus pattern (24 bp):
GATTTAGGAGCTGATAAGAGAGAG
Found at i:183712574 original size:25 final size:26
Alignment explanation
Indices: 183712535--183712603 Score: 79
Period size: 25 Copynumber: 2.7 Consensus size: 26
183712525 CTCTTTTAAT
* *
183712535 AACTGGGACAAAGCCCTTTCT-GATA
1 AACTGGGGCAGAGCCCTTTCTCGATA
* *
183712560 AACTGGGGCAGAG-CCTTTTTCGGTA
1 AACTGGGGCAGAGCCCTTTCTCGATA
*
183712585 AACTAGGGCAGAGCCCTTT
1 AACTGGGGCAGAGCCCTTT
183712604 TAGCACTTCC
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
24 6 0.16
25 26 0.70
26 5 0.14
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
AACTGGGGCAGAGCCCTTTCTCGATA
Found at i:183713554 original size:27 final size:27
Alignment explanation
Indices: 183713524--183713623 Score: 69
Period size: 27 Copynumber: 3.6 Consensus size: 27
183713514 GTAAATCTAC
183713524 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * * *
183713551 AAACTAATGGCATTCCTA-TAATTTT-T
1 AAACCAAGGGTATT-TTAGTAATTTTGT
* *
183713577 AAAAAAGTCAAGGGTATTTTTGTAATTTTGT
1 ---AAA-CCAAGGGTATTTTAGTAATTTTGT
* *
183713608 AAATCAGGGGTATTTT
1 AAACCAAGGGTATTTT
183713624 GATAATTCTA
Statistics
Matches: 55, Mismatches: 11, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
26 1 0.02
27 30 0.55
28 5 0.09
29 4 0.07
30 14 0.25
31 1 0.02
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:183713638 original size:27 final size:27
Alignment explanation
Indices: 183713608--183713687 Score: 67
Period size: 27 Copynumber: 3.0 Consensus size: 27
183713598 GTAATTTTGT
183713608 AAATCAGGGGTATTTTGATAATTCTAC
1 AAATCAGGGGTATTTTGATAATTCTAC
* *
183713635 AAAT-TGAGGGTA-TTTCAGTAATTTCT-C
1 AAATCAG-GGGTATTTTGA-TAA-TTCTAC
* * *
183713662 AAACCAGTGGTATTTTGGTAATTCTA
1 AAATCAGGGGTATTTTGATAATTCTA
183713688 TCCTACAGGG
Statistics
Matches: 40, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
26 9 0.22
27 23 0.57
28 8 0.20
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGATAATTCTAC
Found at i:183713749 original size:27 final size:26
Alignment explanation
Indices: 183713705--183713808 Score: 100
Period size: 27 Copynumber: 3.8 Consensus size: 26
183713695 GGGGTATTTA
** *
183713705 AGTAATTTCATAATTGAGGGTAAAAC
1 AGTAATTTTGTAAATGAGGGTAAAAC
*
183713731 AGTAATTTTGTAAACTGAGGGGTAAAAT
1 AGTAATTTTGTAAA-TGA-GGGTAAAAC
*
183713759 GGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAAT-GAGGGTAAAAC
* * *
183713786 AATAATTCTATAAATCGAGGGTA
1 AGTAATTTTGTAAAT-GAGGGTA
183713809 CTTTGGTAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
26 11 0.17
27 31 0.48
28 23 0.35
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (26 bp):
AGTAATTTTGTAAATGAGGGTAAAAC
Found at i:183713757 original size:28 final size:27
Alignment explanation
Indices: 183713720--183713808 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
183713710 TTTCATAATT
183713720 GAGGGTAAAACAGTAATTTTGTAAA-C
1 GAGGGTAAAACAGTAATTTTGTAAATC
**
183713746 TGAGGGGTAAAATGGTAATTTTGTAAATC
1 -GA-GGGTAAAACAGTAATTTTGTAAATC
* * *
183713775 GAGGGTAAAACAATAATTCTATAAATC
1 GAGGGTAAAACAGTAATTTTGTAAATC
183713802 GAGGGTA
1 GAGGGTA
183713809 CTTTGGTAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
27 29 0.55
28 23 0.43
29 1 0.02
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAACAGTAATTTTGTAAATC
Found at i:183716208 original size:42 final size:42
Alignment explanation
Indices: 183716161--183716252 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
183716151 TGGCCCTTAG
* *** *
183716161 GCCCATTTCAATATCACATGTAATGTTAATGGATGTATACAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATACAA
* *
183716203 GCCCATTACAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATACAA
183716245 GCCCATTT
1 GCCCATTT
183716253 GGGGAAACTA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATACAA
Found at i:183716469 original size:25 final size:26
Alignment explanation
Indices: 183716400--183716469 Score: 108
Period size: 25 Copynumber: 2.8 Consensus size: 26
183716390 CTCTTTTAAT
*
183716400 AACTGGGGCAAAGCCC-TTTCGGATA
1 AACTGGGGCAGAGCCCTTTTCGGATA
183716425 AACTGGGGCAGAGCCCTTTTCGG-TA
1 AACTGGGGCAGAGCCCTTTTCGGATA
*
183716450 AACTAGGGCAGAGCCCTTTT
1 AACTGGGGCAGAGCCCTTTT
183716470 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 36 0.86
26 6 0.14
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (26 bp):
AACTGGGGCAGAGCCCTTTTCGGATA
Found at i:183717333 original size:27 final size:27
Alignment explanation
Indices: 183717272--183717336 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
183717262 GGCGTATTCA
*
183717272 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCTTACAAGGGTATTACGG
* *
183717299 TCACTTTACCTTACAGGGGCT-TTACGG
1 TCATTTTACCTTACAAGGG-TATTACGG
*
183717326 TCTTTTTACCT
1 TCATTTTACCT
183717337 ATTAGGGGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (27 bp):
TCATTTTACCTTACAAGGGTATTACGG
Found at i:183717419 original size:27 final size:28
Alignment explanation
Indices: 183717389--183717495 Score: 82
Period size: 27 Copynumber: 3.9 Consensus size: 28
183717379 CTAAATCTAC
183717389 AAACT-AAGGGTATTTTAGTAATTTTGT
1 AAACTCAAGGGTATTTTAGTAATTTTGT
* *
183717416 AAAC-CAATGGTATTCCTA-TAATTTT-T
1 AAACTCAAGGGTATT-TTAGTAATTTTGT
*
183717442 AAAAAAGTCAAGGGTATTTCT-GTAATTTTGT
1 ---AAACTCAAGGGTATTT-TAGTAATTTTGT
* *
183717473 AAA-TCAGGGGTATTTTGGTAATT
1 AAACTCAAGGGTATTTTAGTAATT
183717496 CTACAAATTG
Statistics
Matches: 64, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
26 2 0.03
27 36 0.56
28 5 0.08
29 3 0.05
30 17 0.27
31 1 0.02
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (28 bp):
AAACTCAAGGGTATTTTAGTAATTTTGT
Found at i:183717503 original size:27 final size:26
Alignment explanation
Indices: 183717477--183717576 Score: 94
Period size: 27 Copynumber: 3.7 Consensus size: 26
183717467 TTTTGTAAAT
183717477 CAGGGGTATTTTGGTAATTCTACAAA
1 CAGGGGTATTTTGGTAATTCTACAAA
** *
183717503 TTGAGGGTATTTCGGTAATTTCT-CAAA
1 CAG-GGGTATTTTGGTAA-TTCTACAAA
* **
183717530 CTAGTGGTATTTTGGTAATTCTATCCTA
1 C-AGGGGTATTTTGGTAATTCTA-CAAA
*
183717558 CAGGGGTATTTTAGTAATT
1 CAGGGGTATTTTGGTAATT
183717577 TCATAATTGA
Statistics
Matches: 58, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
26 5 0.09
27 45 0.78
28 8 0.14
ACGTcount: A:0.26, C:0.11, G:0.22, T:0.41
Consensus pattern (26 bp):
CAGGGGTATTTTGGTAATTCTACAAA
Found at i:183717641 original size:27 final size:26
Alignment explanation
Indices: 183717581--183717669 Score: 101
Period size: 27 Copynumber: 3.4 Consensus size: 26
183717571 GTAATTTCAT
183717581 AATTGAGGGTAAAACGGTAA--TTTA
1 AATTGAGGGTAAAACGGTAATTTTTA
* *
183717605 AACTGAGGGTAAAATGGTAATTTTGTA
1 AATTGAGGGTAAAACGGTAATTTT-TA
* *
183717632 AATTGAGGGTAAAACGATAATTCTATA
1 AATTGAGGGTAAAACGGTAATT-TTTA
*
183717659 AATCGAGGGTA
1 AATTGAGGGTA
183717670 CTTTGGTAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
24 18 0.33
26 2 0.04
27 33 0.61
28 1 0.02
ACGTcount: A:0.40, C:0.06, G:0.25, T:0.29
Consensus pattern (26 bp):
AATTGAGGGTAAAACGGTAATTTTTA
Found at i:183717694 original size:54 final size:51
Alignment explanation
Indices: 183717585--183717696 Score: 116
Period size: 54 Copynumber: 2.1 Consensus size: 51
183717575 TTTCATAATT
* * ** *
183717585 GAGGGTAAAACGGTAATTTAAACTGAGGGTAAAATGGTAATTTTGTAAATT
1 GAGGGTAAAACGATAATTTAAAATGAGGGTAAAATGGTAATTTTACAAATC
*** *
183717636 GAGGGTAAAACGATAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAAGTC
1 GAGGGTAAAACGATAATT-TA-AAAT-GAGGGTAAAATGGTAATTTTACAAATC
183717690 GAGGGTA
1 GAGGGTA
183717697 TTTCAGTAAT
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
51 17 0.35
52 2 0.04
53 3 0.06
54 27 0.55
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.30
Consensus pattern (51 bp):
GAGGGTAAAACGATAATTTAAAATGAGGGTAAAATGGTAATTTTACAAATC
Found at i:183719942 original size:46 final size:46
Alignment explanation
Indices: 183719794--183719965 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 46
183719784 TCACTTGTGT
* * * * **
183719794 GAGCTAGTGTAAGACATCTCTGGGACATGCATCGGCCACA-TTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAGACAT-A
* * * * *
183719840 GAGCCAGAGTAAGACCATGTCTGGGACATGGCATCCGCAT-TGAGATA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCAGACATA
* *
183719887 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGACATA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTC-AGACATA
*
183719934 -AGCCAGTGTAAGACATGTTTGGGACATGCATC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC
183719966 GACTAAACGT
Statistics
Matches: 102, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
45 8 0.08
46 55 0.54
47 30 0.29
48 9 0.09
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAGACATA
Found at i:183722472 original size:43 final size:42
Alignment explanation
Indices: 183722424--183722512 Score: 115
Period size: 42 Copynumber: 2.1 Consensus size: 42
183722414 CTTACATGGG
* *
183722424 ATCTCATATCGATGTCAATAGCCCAGCTATAGTCTTTCACGAA
1 ATCTCATATCGATG-CAATAGCCCAGATATAGTCTTACACGAA
* * * *
183722467 ATCTCATATCGATGCCATATCCCAGATATGGTCTTACACGTA
1 ATCTCATATCGATGCAATAGCCCAGATATAGTCTTACACGAA
183722509 ATCT
1 ATCT
183722513 TAGCTAACCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 26 0.65
43 14 0.35
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.31
Consensus pattern (42 bp):
ATCTCATATCGATGCAATAGCCCAGATATAGTCTTACACGAA
Found at i:183722512 original size:42 final size:42
Alignment explanation
Indices: 183722393--183722512 Score: 132
Period size: 43 Copynumber: 2.8 Consensus size: 42
183722383 TATCATAACA
* * * **
183722393 ATGCCATATCCCAAATATGATCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * * *
183722435 ATGTCAATAGCCCAGCTATAGTCTTTCACGAAATCTCATATCG
1 ATG-CCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
*
183722478 ATGCCATATCCCAGATATGGTCTTACACGTAATCT
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCT
183722513 TAGCTAACCC
Statistics
Matches: 61, Mismatches: 16, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
42 29 0.48
43 32 0.52
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:183726697 original size:17 final size:18
Alignment explanation
Indices: 183726655--183726703 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
183726645 AGTTGAAAAG
183726655 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
183726674 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
183726691 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
183726704 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:183727586 original size:40 final size:40
Alignment explanation
Indices: 183727520--183727686 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
183727510 AAATTGAATG
* * *
183727520 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
183727559 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
183727599 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
183727639 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
183727679 ATATCCGG
1 ATATCCGG
183727687 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:183737146 original size:21 final size:21
Alignment explanation
Indices: 183737118--183737163 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
183737108 GGATTTCAAT
183737118 ATGT-GTGTGCGAGTAAGACC
1 ATGTCGTGTGCGAGTAAGACC
183737138 ATGTCGTGTGCGAGTAAGACC
1 ATGTCGTGTGCGAGTAAGACC
183737159 ATGTC
1 ATGTC
183737164 ATCGATATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.16
21 21 0.84
ACGTcount: A:0.24, C:0.17, G:0.33, T:0.26
Consensus pattern (21 bp):
ATGTCGTGTGCGAGTAAGACC
Found at i:183740470 original size:48 final size:48
Alignment explanation
Indices: 183740408--183740689 Score: 474
Period size: 48 Copynumber: 5.9 Consensus size: 48
183740398 TATATATGTG
183740408 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
*
183740456 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
*
183740504 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
*
183740552 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* * *
183740600 TGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTCTA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* * * *
183740648 TGCGGTAAAGCTGAATGGCTAATGTAAAATATGTATGAGATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATA
183740690 ATGGCTAATG
Statistics
Matches: 227, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 227 1.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
Found at i:183740561 original size:96 final size:96
Alignment explanation
Indices: 183740408--183740911 Score: 486
Period size: 96 Copynumber: 5.5 Consensus size: 96
183740398 TATATATGTG
*
183740408 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATG
*
183740473 GCTAGTGTGAAATATATATGAGATATGTATA
66 GCTAGTGTGAAATATGTATGAGATATGTATA
183740504 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATG
*
183740569 GCTAATGTGAAATATGTATGAGATATGTATA
66 GCTAGTGTGAAATATGTATGAGATATGTATA
* * * * * *
183740600 TGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTCTATGCGGTAAAGCTGAATG
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATG
* *
183740665 GCTAATGTAAAATATGTATGAGATAATGGCTA-A
66 GCTAGTGTGAAATATGTATGAGAT-AT-G-TATA
* * * * * * * * ** *
183740698 TGT-G-AAA----TAT-G-TA-TGAGATATGTATATGCGGTAAAGCTGA-ATG-GCTAGTG-TGA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGAT-ATG-T-ATATGTGGTAAAGCCG-
* * *
183740751 AAT--ATA-TATGAGATATGTAT---A------TA
62 AATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * *
183740774 --CGGTAAAGCCGAATGGCTAGTGTAAAATATATATGAGATATGTATATGCGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATG
183740837 GCTAGTGTGAAATATGTATGAGATATGTATA
66 GCTAGTGTGAAATATGTATGAGATATGTATA
* *
183740868 TGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATG
183740912 GCTAGTGTGA
Statistics
Matches: 329, Mismatches: 45, Indels: 68
0.74 0.10 0.15
Matches are distributed among these distances:
75 1 0.00
76 4 0.01
80 3 0.01
81 5 0.02
82 11 0.03
83 14 0.04
84 3 0.01
85 12 0.04
87 11 0.03
88 3 0.01
89 15 0.05
90 11 0.03
91 5 0.02
92 2 0.01
94 2 0.01
96 218 0.66
97 3 0.01
98 4 0.01
99 2 0.01
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATG
GCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:183740693 original size:28 final size:28
Alignment explanation
Indices: 183740661--183740717 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
183740651 GGTAAAGCTG
183740661 AATGGCTAATGTAAAATATGTATGAGAT
1 AATGGCTAATGTAAAATATGTATGAGAT
*
183740689 AATGGCTAATGTGAAATATGTATGAGAT
1 AATGGCTAATGTAAAATATGTATGAGAT
183740717 A
1 A
183740718 TGTATATGCG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.42, C:0.04, G:0.23, T:0.32
Consensus pattern (28 bp):
AATGGCTAATGTAAAATATGTATGAGAT
Found at i:183740721 original size:48 final size:49
Alignment explanation
Indices: 183740685--183740911 Score: 205
Period size: 48 Copynumber: 4.7 Consensus size: 49
183740675 AATATGTATG
* * *
183740685 AGAT-AATGGCTAATGTGAAATATGTATGAGATATGT-ATATGCGGTAA
1 AGATGAATGGCTAATGTGAAATATATATGAGATATGTAAAATGAGGTAA
* * *
183740732 AGCTGAATGGCTAGTGTGAAATATATATGAGATATGT-ATAT-ACGGTAA
1 AGATGAATGGCTAATGTGAAATATATATGAGATATGTAAAATGA-GGTAA
** * * * *
183740780 AGCCGAATGGCTAGTGTAAAATATATATGAGATATGT-ATATGCGGTAA
1 AGATGAATGGCTAATGTGAAATATATATGAGATATGTAAAATGAGGTAA
** * * * *
183740828 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT-ATATGCGGTAA
1 AGATGAATGGCTAATGTGAAATATATATGAGATATGTAAAATGAGGTAA
** * *
183740876 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 AGATGAATGGCTAATGTGAAATATATATGAGATATG
183740912 GCTAGTGTGA
Statistics
Matches: 168, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
47 3 0.02
48 165 0.98
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (49 bp):
AGATGAATGGCTAATGTGAAATATATATGAGATATGTAAAATGAGGTAA
Found at i:183740765 original size:124 final size:124
Alignment explanation
Indices: 183740565--183740813 Score: 426
Period size: 124 Copynumber: 2.0 Consensus size: 124
183740555 GGTAAAGCCG
183740565 AATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAAT
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAAT
* * * * *
183740630 ATGTATGAGATATGTCTATGCGGTAAAGCTGAATGGCTAATGTAAAATATGTATGAGAT
66 ATATATGAGATATGTATATACGGTAAAGCCGAATGGCTAATGTAAAATATATATGAGAT
* *
183740689 AATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAGCTGAATGGCTAGTGTGAAAT
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAAT
*
183740754 ATATATGAGATATGTATATACGGTAAAGCCGAATGGCTAGTGTAAAATATATATGAGAT
66 ATATATGAGATATGTATATACGGTAAAGCCGAATGGCTAATGTAAAATATATATGAGAT
183740813 A
1 A
183740814 TGTATATGCG
Statistics
Matches: 117, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
124 117 1.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (124 bp):
AATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAAT
ATATATGAGATATGTATATACGGTAAAGCCGAATGGCTAATGTAAAATATATATGAGAT
Found at i:183740920 original size:27 final size:27
Alignment explanation
Indices: 183740882--183740938 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
183740872 GTAAAGCCGA
183740882 ATGGCTAGTGTGAAATATGTATGAGAT
1 ATGGCTAGTGTGAAATATGTATGAGAT
183740909 ATGGCTAGTGTGAAATATGTATGAGAT
1 ATGGCTAGTGTGAAATATGTATGAGAT
183740936 ATG
1 ATG
183740939 TATATGCGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.33, C:0.04, G:0.30, T:0.33
Consensus pattern (27 bp):
ATGGCTAGTGTGAAATATGTATGAGAT
Found at i:183740924 original size:75 final size:75
Alignment explanation
Indices: 183740834--183740986 Score: 306
Period size: 75 Copynumber: 2.0 Consensus size: 75
183740824 GTAAAGCCGA
183740834 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATA
1 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATA
183740899 TGTATGAGAT
66 TGTATGAGAT
183740909 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATA
1 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATA
183740974 TGTATGAGAT
66 TGTATGAGAT
183740984 ATG
1 ATG
183740987 TATATGCGGT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 78 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (75 bp):
ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATA
TGTATGAGAT
Found at i:183740964 original size:171 final size:171
Alignment explanation
Indices: 183740566--183741082 Score: 740
Period size: 171 Copynumber: 3.0 Consensus size: 171
183740556 GTAAAGCCGA
* *
183740566 ATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAATA
1 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATA
* * * *
183740631 TGTATGAGATATGTCTATGCGGTAAAGCTGAATGGCTAATGTAAAATATGTATGAGATAATGGCT
66 TGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT-AT-G-T
* *** * * * ** * *
183740696 A-ATG-TG-AAATATGTATGAGATA-TGT-ATATGCGGTA-AAGCT
128 ATATGCGGTAAAGCCGAATG-GCTAGTGTGAAAT-ATGTATGAGAT
* * *
183740736 GAATGGCTAGTGTGAAATATATATGAGATATGTATATACGGTAAAGCCGAATGGCTAGTGTAAAA
1 --ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAA
*
183740801 TATATATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
64 TATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
183740866 TATGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
129 TATGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
183740909 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATA
1 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATA
183740974 TGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
66 TGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
183741039 TGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
131 TGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
183741080 ATG
1 ATG
183741083 TATATGTGGT
Statistics
Matches: 314, Mismatches: 25, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
169 2 0.01
170 4 0.01
171 176 0.56
172 126 0.40
173 6 0.02
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.30
Consensus pattern (171 bp):
ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATA
TGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
TGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
Found at i:183741005 original size:123 final size:123
Alignment explanation
Indices: 183740786--183741034 Score: 480
Period size: 123 Copynumber: 2.0 Consensus size: 123
183740776 GTAAAGCCGA
183740786 ATGGCTAGTGTAAAATATATATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATA
1 ATGGCTAGTGTAAAATATATATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATA
183740851 TGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
66 TGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
* *
183740909 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATA
1 ATGGCTAGTGTAAAATATATATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATA
183740974 TGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
66 TGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
183741032 ATG
1 ATG
183741035 TATATGCGGT
Statistics
Matches: 124, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 124 1.00
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (123 bp):
ATGGCTAGTGTAAAATATATATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATA
TGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
Found at i:183741223 original size:48 final size:48
Alignment explanation
Indices: 183740909--183741216 Score: 580
Period size: 48 Copynumber: 6.4 Consensus size: 48
183740899 TGTATGAGAT
183740909 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGA
1 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGA
183740957 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGA
1 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGA
183741005 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGA
1 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGA
*
183741053 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGA
* *
183741101 ATGGCTAGTGTGAAATATGAATGAGATATGTATATGTGGTAAAGCCGA
1 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGA
*
183741149 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGA
183741197 ATGGCTAGTGTGAAATATGT
1 ATGGCTAGTGTGAAATATGT
183741217 TGGAGATGTG
Statistics
Matches: 257, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 257 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.30
Consensus pattern (48 bp):
ATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGA
Found at i:183742374 original size:27 final size:27
Alignment explanation
Indices: 183742323--183742412 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 27
183742313 GTGACAGAGT
*
183742323 CACCAGATATAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
183742352 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
183742379 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
183742407 CACCAG
1 CACCAG
183742413 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 24 0.44
28 23 0.43
29 7 0.13
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:183742566 original size:28 final size:28
Alignment explanation
Indices: 183742519--183742584 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
183742509 AAATTAACCC
*
183742519 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
* *
183742547 TAGGGGTATTATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
183742575 TA-GGGTATAA
1 TAGGGGTATAA
183742585 TAGTACATCT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 7 0.21
28 27 0.79
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:183745329 original size:24 final size:24
Alignment explanation
Indices: 183745289--183745350 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
183745279 GATTATGTAG
183745289 AAAGAATAAAGAAATGAA-AAAAAA
1 AAAGAA-AAAGAAATGAAGAAAAAA
* *
183745313 AAAGAAAGAGAATATGAAGAAAAAC
1 AAAGAAAAAGAA-ATGAAGAAAAAA
*
183745338 AAAGAAAAGGAAA
1 AAAGAAAAAGAAA
183745351 AAAAAAAAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 5 0.16
24 12 0.38
25 15 0.47
ACGTcount: A:0.74, C:0.02, G:0.18, T:0.06
Consensus pattern (24 bp):
AAAGAAAAAGAAATGAAGAAAAAA
Found at i:183746584 original size:27 final size:28
Alignment explanation
Indices: 183746527--183746596 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
183746517 AAATTTGTAC
**
183746527 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
183746555 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
183746582 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
183746597 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:183754407 original size:27 final size:28
Alignment explanation
Indices: 183754350--183754419 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
183754340 AAATTTGTAC
**
183754350 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
183754378 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
183754405 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
183754420 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:183756525 original size:40 final size:40
Alignment explanation
Indices: 183756469--183756707 Score: 397
Period size: 40 Copynumber: 6.0 Consensus size: 40
183756459 TTGAGAGTTA
* * *
183756469 TATAGCCGGGCAAAGTCCCGAAGAGCATTCGTGCTTGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
183756509 TATGTCCGGGCTAAGTCCCGAAGAGCACTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
183756549 TATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
183756589 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
183756629 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
183756669 TATATCCGGGCTAGGTCCCGAAGAGCAATCTTGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
183756708 ATGTGCATTC
Statistics
Matches: 187, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 187 1.00
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:183760204 original size:48 final size:48
Alignment explanation
Indices: 183760145--183761046 Score: 1463
Period size: 48 Copynumber: 18.8 Consensus size: 48
183760135 ATATGTGTGT
* *
183760145 GGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGC
* * *
183760193 TGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATACGT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGC
* *
183760241 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGC
* *
183760289 AGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGC
*
183760337 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGC
183760385 GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGC
*
183760433 GGTAAAGCCGAATTGCTAGTGTGAAATATATATGAGATATGTATATGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGC
* *
183760481 GGTAAAGGCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGC
* *
183760529 GGTAAAGGCGAATTGCTAGTGTGAAATATGA-ATGAGATATGTATATGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATATGC
* *
183760577 GGTAAAGGCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATCTGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATATGC
* * *
183760625 GGTAAAGGCGAATGGCTAGTGTGAAATATGTATGAGATATGTATCTGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGC
* *
183760673 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATCTGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGC
*
183760721 GGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATCTGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATATGC
*
183760769 GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATCTGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGC
183760817 GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGC
*
183760865 GGTAAAGCCGAATGGCTAGTGTGAAGTATATATGAGATATGTATATGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGC
183760913 GGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATATGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATATGC
*
183760961 GGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATATGC
* * *
183761009 GGTAAAGTCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGAT
183761047 GTGTGTATAT
Statistics
Matches: 818, Mismatches: 30, Indels: 12
0.95 0.03 0.01
Matches are distributed among these distances:
47 1 0.00
48 815 1.00
49 2 0.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (48 bp):
GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGC
Found at i:183761239 original size:37 final size:37
Alignment explanation
Indices: 183761189--183761289 Score: 184
Period size: 37 Copynumber: 2.7 Consensus size: 37
183761179 AAATATATTT
183761189 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
183761226 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
183761263 CGGGTAAGACCCGATAACTACGTGTGG
1 CGGGTAAGACCCGATGACTACGTGTGG
183761290 GGACTATTCG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.24
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
Found at i:183763224 original size:29 final size:29
Alignment explanation
Indices: 183763185--183763263 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
183763175 CTTAATAATC
*
183763185 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
183763215 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
183763244 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
183763264 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:183778088 original size:27 final size:28
Alignment explanation
Indices: 183778021--183778081 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
183778011 AAATTTGTAC
183778021 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
183778049 AGCACTAAGTGTGCGAG-TTGAAT-ATAT
1 AGCACTAAGTGTGCGAGTTTG-ATCATAT
183778076 AGCACT
1 AGCACT
183778082 GATTGTGTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
27 13 0.41
28 19 0.59
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:183784113 original size:37 final size:37
Alignment explanation
Indices: 183784063--183784153 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
183784053 TTATTACGAA
*
183784063 GTCTTACCCGGACATAATCTCCACACGTAGTCATTGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
183784100 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
183784137 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
183784154 TTTCCAAGTT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
37 46 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:183784349 original size:49 final size:49
Alignment explanation
Indices: 183784240--183784575 Score: 613
Period size: 49 Copynumber: 6.9 Consensus size: 49
183784230 CACACATATA
183784240 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--ACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
* *
183784287 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
183784336 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
*
183784385 TTTCTCATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
183784434 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
183784483 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
**
183784532 TTTCACATTCATCACATTTGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
183784576 TATCTCATAC
Statistics
Matches: 280, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
47 42 0.15
49 238 0.85
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
Found at i:183789220 original size:56 final size:57
Alignment explanation
Indices: 183789130--183789284 Score: 269
Period size: 57 Copynumber: 2.7 Consensus size: 57
183789120 ATCGTATAAC
* *
183789130 AGGATTACCAGTCCAGGCTAAATCCATTAT-ATAACGTATGCTCAGA-GGGCTCGATT
1 AGGATTACCAGTCCAGGCTAAA-CCCTAATCATAACGTATGCTCAGAGGGGCTCGATT
183789186 AGGATTACCAGTCCAGGCTAAACCCTAATCATAACGTATGCTCAGAGGGGCTCGATT
1 AGGATTACCAGTCCAGGCTAAACCCTAATCATAACGTATGCTCAGAGGGGCTCGATT
183789243 AGGATTACCAGTCCAGGCTAAACCCTAATCATAACGTATGCT
1 AGGATTACCAGTCCAGGCTAAACCCTAATCATAACGTATGCT
183789285 TGAGAGGTAT
Statistics
Matches: 95, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
55 5 0.05
56 38 0.40
57 52 0.55
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.25
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAACCCTAATCATAACGTATGCTCAGAGGGGCTCGATT
Found at i:183789815 original size:20 final size:20
Alignment explanation
Indices: 183789790--183789836 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
183789780 TCAGCACATG
* *
183789790 TTTTCATAAAATTTTAGAAT
1 TTTTCATAAAATTTTACAAC
*
183789810 TTTTCATCAAATTTTACAAC
1 TTTTCATAAAATTTTACAAC
183789830 TTTTCAT
1 TTTTCAT
183789837 TTTAGTCCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.34, C:0.13, G:0.02, T:0.51
Consensus pattern (20 bp):
TTTTCATAAAATTTTACAAC
Found at i:183794894 original size:40 final size:40
Alignment explanation
Indices: 183794849--183795056 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
183794839 CGGAATACAA
*
183794849 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
183794889 CCGGATACAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
183794929 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
183794969 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
* ** * ** ** *
183795009 CTGGATATAATTACTAGCATAAATGTGTTCGGGACTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
183795049 CCGGATAT
1 CCGGATAT
183795057 CATTCAATTG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:183802808 original size:40 final size:39
Alignment explanation
Indices: 183802763--183802969 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
183802753 CGGAATACAA
*
183802763 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
183802803 CCGGATACAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
183802843 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
183802883 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTA-A
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
183802922 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
183802962 CCGGATAT
1 CCGGATAT
183802970 CATTCAATTG
Statistics
Matches: 140, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 32 0.23
40 108 0.77
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:183802903 original size:80 final size:79
Alignment explanation
Indices: 183802761--183802968 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 79
183802751 TTCGGAATAC
* * *
183802761 AACCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATACAACGACTTGCACAAA
1 AACCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATACAACGACTAGCACAAA
183802826 TGCCTTCGGGTATT
66 TGCCTTCGGGTATT
* * ** *
183802840 AGCCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACA
1 A-ACCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATACA-ACGACTAGCACA
* *
183802904 ATTGCCTTCGGGTCTT
64 AATGCCTTCGGGTATT
** * ** * *
183802920 AACCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 AACCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
183802969 TCATTCAATT
Statistics
Matches: 107, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
79 39 0.36
80 67 0.63
81 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (79 bp):
AACCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATACAACGACTAGCACAAA
TGCCTTCGGGTATT
Found at i:183809326 original size:136 final size:137
Alignment explanation
Indices: 183809082--183809367 Score: 538
Period size: 136 Copynumber: 2.1 Consensus size: 137
183809072 CATTGGGCCT
**
183809082 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
183809147 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
183809211 CATATGC
131 CATATGC
183809218 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
183809283 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
183809348 CATATGC
131 CATATGC
183809355 AAGCCCATTTGGG
1 AAGCCCATTTGGG
183809368 GAGACTACTC
Statistics
Matches: 146, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
136 124 0.85
137 22 0.15
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:183809652 original size:25 final size:26
Alignment explanation
Indices: 183809615--183809666 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
183809605 TCAAACATGC
183809615 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* * *
183809641 ATTTCGGT-AATTTATCTCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
183809666 A
1 A
183809667 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:183811181 original size:26 final size:26
Alignment explanation
Indices: 183811145--183811279 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
183811135 ACATGAATTC
183811145 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
183811171 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
183811197 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
183811223 TTATCATGAAACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
* *
183811248 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
183811274 TTATCA
1 TTATCA
183811280 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 23 0.23
26 79 0.77
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:183815300 original size:136 final size:137
Alignment explanation
Indices: 183815056--183815341 Score: 493
Period size: 136 Copynumber: 2.1 Consensus size: 137
183815046 CATTGGGCCT
** * *
183815056 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAAATTACAATAAACCGGGCCTT
183815121 AGCCCCTTATTCAGATAACAGTATGGCCCATAAGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAAGCCCATTTCAAAATACATGCAACATCAATAAA
183815185 CATATGC
131 CATATGC
*
183815192 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACCGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAAATTACAATAAACCGGGCCTT
* *
183815257 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAAGCCCATTTCAAAATACATGCAACATCAATAAA
183815322 CATATGC
131 CATATGC
*
183815329 AAACCCATTTGGG
1 AAGCCCATTTGGG
183815342 GAGACTACTC
Statistics
Matches: 141, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
136 120 0.85
137 21 0.15
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAAATTACAATAAACCGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAAGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:183817161 original size:26 final size:26
Alignment explanation
Indices: 183817125--183817260 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
183817115 CATGATATTC
183817125 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
183817151 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
183817177 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
183817203 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* **
183817229 TTATCATGGAACATTTACCTAACTTA
1 TTATCATGAAACATTTACCTAACCCA
183817255 TTATCA
1 TTATCA
183817261 ATTTGTATCA
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:183818791 original size:18 final size:18
Alignment explanation
Indices: 183818764--183818801 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
183818754 CCAAAAACAC
183818764 ATTAAAAACGAGATTAAA
1 ATTAAAAACGAGATTAAA
*
183818782 ATTAAGAACGAGATTAAA
1 ATTAAAAACGAGATTAAA
183818800 AT
1 AT
183818802 ATTTTACTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.58, C:0.05, G:0.13, T:0.24
Consensus pattern (18 bp):
ATTAAAAACGAGATTAAA
Found at i:183824473 original size:19 final size:19
Alignment explanation
Indices: 183824429--183824473 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
183824419 GTAGTAGTTT
*
183824429 TTTATAAGAAAAAAACTTC
1 TTTATATGAAAAAAACTTC
183824448 TTTATATGAAAAAAACTTC
1 TTTATATGAAAAAAACTTC
183824467 TTTATAT
1 TTTATAT
183824474 TTTAACTACC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (19 bp):
TTTATATGAAAAAAACTTC
Found at i:183825337 original size:17 final size:17
Alignment explanation
Indices: 183825299--183825343 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 17
183825289 TTTTTTTATC
183825299 TAAATAAATATTTATTTAA
1 TAAA-AAATATTTA-TTAA
183825318 TAATAAAATATTTA-TAA
1 TAA-AAAATATTTATTAA
183825335 TAAAAAATA
1 TAAAAAATA
183825344 ATTTTATATC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 6 0.24
17 6 0.24
19 12 0.48
20 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAAAAATATTTATTAA
Found at i:183825340 original size:15 final size:15
Alignment explanation
Indices: 183825311--183825339 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
183825301 AATAAATATT
183825311 TATTTAATAATAAAA
1 TATTTAATAATAAAA
183825326 TATTT-ATAATAAAA
1 TATTTAATAATAAAA
183825340 AATAATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TATTTAATAATAAAA
Found at i:183830123 original size:2 final size:2
Alignment explanation
Indices: 183830073--183830108 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
183830063 TAGAATGATG
183830073 TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
183830109 GATAAAGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 30 0.94
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:183830372 original size:14 final size:14
Alignment explanation
Indices: 183830353--183830380 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
183830343 GAGAGTATAC
183830353 TAATAGTAATAATA
1 TAATAGTAATAATA
183830367 TAATAGTAATAATA
1 TAATAGTAATAATA
183830381 ATAAGAAGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
TAATAGTAATAATA
Found at i:183830742 original size:3 final size:3
Alignment explanation
Indices: 183830453--183830729 Score: 160
Period size: 3 Copynumber: 90.7 Consensus size: 3
183830443 ATGATAATTG
* * *
183830453 TAA TAA TAA -AGA TAA TAA T-A TAAA TAA TAG TAA -AA TAA TGA TAG
1 TAA TAA TAA TA-A TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
* * * *
183830497 TAA TAA TAA TAA -AG TGGAA -AA TGA TAA TAA TAA TACA CCAA TAA GAA
1 TAA TAA TAA TAA TAA T--AA TAA TAA TAA TAA TAA TA-A -TAA TAA TAA
* * * ** *
183830544 TGAA -AA CAA TAA -AT TTA TAA TAA CGA CAA TAGA TAA TAA TAA TAA
1 T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
* *
183830589 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -AA GGAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA
* * * * *
183830634 TAG TAA TAA TAA GAA TATT TAA TAA TAG TAA TAA TAA CAA TAA T-A
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
183830679 TAAA TAA TAA TATA TACA TGAA AAA TAA TAA TAA TAA TAA T-A TAAA
1 T-AA TAA TAA TA-A TA-A T-AA TAA TAA TAA TAA TAA TAA TAA T-AA
183830725 TAA TA
1 TAA TA
183830730 GCAAAAATAA
Statistics
Matches: 211, Mismatches: 39, Indels: 48
0.71 0.13 0.16
Matches are distributed among these distances:
2 17 0.08
3 167 0.79
4 24 0.11
5 3 0.01
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:183837413 original size:4 final size:4
Alignment explanation
Indices: 183837397--183837434 Score: 60
Period size: 4 Copynumber: 9.8 Consensus size: 4
183837387 AAACCTATAT
*
183837397 ATAA ATAT A-AA ATAA ATAA ATAA ATAA ATAA ATAA ATA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA
183837435 GTAAAAAACC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 2 0.06
4 29 0.94
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:183838969 original size:2 final size:2
Alignment explanation
Indices: 183838962--183838990 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
183838952 TTTAAATTAT
183838962 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
183838991 GTGAATATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:183840698 original size:266 final size:262
Alignment explanation
Indices: 183840194--183840816 Score: 683
Period size: 265 Copynumber: 2.4 Consensus size: 262
183840184 GAAGACGAGA
* * * * * * *
183840194 TTCGATATTTGGAAATTTGCAAAATAGTGCCCTAACGTGTTGGGTTGCAATTTCGCATTTGCTCA
1 TTCGATATTTGGCAA-TTGGAGAATCGTGCCCTATCGTGATGGGTTGCAATTTCGCATTTGCGCA
* **
183840259 AAATAATCGAATATTACTTCAAAATTTCACTCATGTCTTCTAAAAATCTTTTAAAACAAAGGTGA
65 AAATAATCGAATATCACTTCAAAATTTCACTCATGTCTTCTAAAAATCTTTTAAAACAAAGGCAA
** * * *
183840324 TACTCGGTGTTTGATAATTCGAGAATCATGCCCTATCGTGCTGGGTTGTGATTCCTCGTTTGCTC
130 TACTCGGCATTTGACAATTCGAGAATCATGCCCTATCGTGCTGGGTTATGATTCCTCATTTGCTC
* * * * *
183840389 GAAACAATCGAATATTCCTTTAGGTTTTCACTCATGTTTAAAAAAAATATATTTAAAAACGAAGG
195 AAAACAATCGAACATTCCTTTAGATTCTCACTCATGTTT-AAAAAAA-ATATCTAAAAACGAAGG
183840454 AAATG
258 AAATG
* * * *
183840459 TTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGATGGGTTGCAATTTCTCGTTTGCGCA
1 TTCGATATTTGGCAATT-GGAGAATCGTGCCCTATCGTGATGGGTTGCAATTTCGCATTTGCGCA
* * * *** * * *
183840524 AGATAGTCGAATATCCCTTTGGAATTTCATTCGTGTTTTCTAAAAA-CTTTTTAAAACGAAAGGC
65 AAATAATCGAATATCACTTCAAAATTTCACTCATGTCTTCTAAAAATC-TTTTAAAAC-AAAGGC
* * * *
183840588 AATATTCGGCATTTGACAATTCGAGAATCATGCTCTATCGTGCTGGGTTATGATTTCTTATTTGC
128 AATACTCGGCATTTGACAATTCGAGAATCATGCCCTATCGTGCTGGGTTATGATTCCTCATTTGC
* * *
183840653 TCAAAACGATCGAACATTCCTTTATATTCTCACTCATGTTTAAAAAAAATATCTAAAAATGAAGG
193 TCAAAACAATCGAACATTCCTTTAGATTCTCACTCATGTTTAAAAAAAATATCTAAAAACGAAGG
**
183840718 CGATG
258 AAATG
* * * * ** **
183840723 TTCGATATTTGGCGATTTGAGAATCGAGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGTC-CA
1 TTCGATATTTGGCAATTGGAGAATCGTGCCCTATCGTGATGGGTTGCAATTTCGCATTTG-CGCA
* * * *
183840787 AAACAATCGAATATCTCCTCAGAATTTCAC
65 AAATAATCGAATATCACTTCAAAATTTCAC
183840817 ACGTATTTTA
Statistics
Matches: 294, Mismatches: 60, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
263 59 0.20
264 37 0.13
265 103 0.35
266 95 0.32
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (262 bp):
TTCGATATTTGGCAATTGGAGAATCGTGCCCTATCGTGATGGGTTGCAATTTCGCATTTGCGCAA
AATAATCGAATATCACTTCAAAATTTCACTCATGTCTTCTAAAAATCTTTTAAAACAAAGGCAAT
ACTCGGCATTTGACAATTCGAGAATCATGCCCTATCGTGCTGGGTTATGATTCCTCATTTGCTCA
AAACAATCGAACATTCCTTTAGATTCTCACTCATGTTTAAAAAAAATATCTAAAAACGAAGGAAA
TG
Found at i:183840782 original size:131 final size:129
Alignment explanation
Indices: 183840194--183840805 Score: 451
Period size: 131 Copynumber: 4.6 Consensus size: 129
183840184 GAAGACGAGA
* * * * * * *
183840194 TTCGATATTTGGAAATTTGCAAAAT-AGTGCCCTAACGTGTTGGGTTGCAATTTCGCATTTGCTC
1 TTCGATATTTGGCAATTCG-AGAATCA-TGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGCTC
* * * ** * * * *
183840258 AAAATAATCGAATATTACTTCAAAATTTCACTCATGTCTT-CTAAAAATCTTTTAAAACAAAGGT
64 AAAACAATCGAATATTCCTT--TAATTTCACTCATGT-TTAAAAAAAATATTTAAAAACGAAGGC
* *
183840322 GATA
126 AATG
* * * ** * * * *
183840326 CTCGGTGTTTGATAATTCGAGAATCATGCCCTATCGTGCTGGGTTGTGATTCCTCGTTTGCTCGA
1 TTCGATATTTGGCAATTCGAGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGCTCAA
* *
183840391 AACAATCGAATATTCCTTTAGGTTTTCACTCATGTTTAAAAAAAATATATTTAAAAACGAAGGAA
66 AACAATCGAATATTCCTTTA--ATTTCACTCATGTTT-AAAAAAA-ATATTTAAAAACGAAGGCA
183840456 ATG
127 ATG
* * * * * * *
183840459 TTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGATGGGTTGCAATTTCTCGTTTGCGCA
1 TTCGATATTTGGCAATTC-GAGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGCTCA
* * * * * * ** * *
183840524 AGATAGTCGAATATCCCTTTGGAATTTCATTCGTGTTTTCTAAAAACT-TTTTAAAACGAAAGGC
65 AAACAATCGAATATTCCTTT--AATTTCACTCATG-TTTAAAAAAAATATTTAAAAACG-AAGGC
*
183840588 AATA
126 AATG
** * * ** *
183840592 TTCGGCATTTGACAATTCGAGAATCATGCTCTATCGTGCTGGGTTATGATTTCTTATTTGCTCAA
1 TTCGATATTTGGCAATTCGAGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGCTCAA
* * * * *
183840657 AACGATCGAACATTCCTTTATATTCTCACTCATGTTTAAAAAAAATATCTAAAAATGAAGGCGAT
66 AACAATCGAATATTCCTTTA-ATT-TCACTCATGTTTAAAAAAAATATTTAAAAACGAAGGCAAT
183840722 G
129 G
* * * *
183840723 TTCGATATTTGGCGATTTGAGAATCGA-GCCCTATCGTGCTGGGTTGCGCTTTTTCATTTG-TCC
1 TTCGATATTTGGCAATTCGAGAATC-ATGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGCT-C
183840786 AAAACAATCGAATATCTCCT
64 AAAACAATCGAATAT-TCCT
183840806 CAGAATTTCA
Statistics
Matches: 368, Mismatches: 95, Indels: 34
0.74 0.19 0.07
Matches are distributed among these distances:
129 1 0.00
130 4 0.01
131 143 0.39
132 96 0.26
133 52 0.14
134 68 0.18
135 3 0.01
136 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.35
Consensus pattern (129 bp):
TTCGATATTTGGCAATTCGAGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGCTCAA
AACAATCGAATATTCCTTTAATTTCACTCATGTTTAAAAAAAATATTTAAAAACGAAGGCAATG
Found at i:183842224 original size:33 final size:33
Alignment explanation
Indices: 183842187--183842255 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
183842177 CTTCAGCCGC
183842187 CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
1 CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
* * * *
183842220 CGCATGCCTCTCAGCCTTGGTCACCACGCTCCA
1 CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
183842253 CGC
1 CGC
183842256 GTCTGACACT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.16, C:0.51, G:0.17, T:0.16
Consensus pattern (33 bp):
CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
Found at i:183843465 original size:20 final size:21
Alignment explanation
Indices: 183843440--183843479 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
183843430 TTGTTATATT
*
183843440 ACTATTATTGTTA-TATTATC
1 ACTATTATTCTTACTATTATC
*
183843460 ACTATTTTTCTTACTATTAT
1 ACTATTATTCTTACTATTAT
183843480 TATTACTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.57
Consensus pattern (21 bp):
ACTATTATTCTTACTATTATC
Found at i:183843499 original size:3 final size:3
Alignment explanation
Indices: 183843358--183843484 Score: 107
Period size: 3 Copynumber: 42.3 Consensus size: 3
183843348 TTTTATTTAC
*
183843358 ATT ATT ATT AGT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATCT CCATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T --ATT
* * * * *
183843406 ACT ATT ATT ATT ATT ATT ATT CTT -TT GTT A-T ATT ACT ATT ATT GTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
183843452 A-T ATT ATC ACT ATT TTT CTT ACT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
183843485 CTACAACTAT
Statistics
Matches: 99, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
2 6 0.06
3 89 0.90
4 1 0.01
5 1 0.01
6 2 0.02
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:183843793 original size:15 final size:15
Alignment explanation
Indices: 183843773--183843803 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
183843763 TATTATTTTC
183843773 TATTTATTACTATTA
1 TATTTATTACTATTA
183843788 TATTTATTACTATTA
1 TATTTATTACTATTA
183843803 T
1 T
183843804 TAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:183843911 original size:15 final size:15
Alignment explanation
Indices: 183843893--183843930 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
183843883 CCCACCTAGC
183843893 TATTATTACTATTAT
1 TATTATTACTATTAT
*
183843908 TATTTTTACTATTAT
1 TATTATTACTATTAT
*
183843923 AATTATTA
1 TATTATTA
183843931 TTAATCTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTATTACTATTAT
Found at i:183863284 original size:2 final size:2
Alignment explanation
Indices: 183863277--183863304 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
183863267 ATCTCTTAAG
183863277 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
183863305 GCACTTTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:183875608 original size:40 final size:39
Alignment explanation
Indices: 183875563--183875692 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
183875553 CGGAATATAA
183875563 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
183875603 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
183875643 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
183875683 CCGGATATAA
1 CCGGATATAA
183875693 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:183875707 original size:40 final size:40
Alignment explanation
Indices: 183875579--183875730 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
183875569 ATAACCATGT
* * *
183875579 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
183875619 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
183875659 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
183875699 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
183875731 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:183875713 original size:80 final size:80
Alignment explanation
Indices: 183875579--183875728 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
183875569 ATAACCATGT
*
183875579 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
183875643 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
183875659 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
183875722 CCCGGAT
64 CCCGGAT
183875729 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:183885955 original size:121 final size:120
Alignment explanation
Indices: 183885738--183885955 Score: 280
Period size: 121 Copynumber: 1.8 Consensus size: 120
183885728 GAATTATGTG
** * * *
183885738 AATGAAATATGGATGTGTATGATTATTGATTATGTGTGTATGAGTATTTGAATGATACCCGGGCT
1 AATGAAATATGGATGTCAATGATTATTGATTATGTGTGCATGAGAAATTGAATGATACCCGGGCT
* * **
183885803 AAGTCCCGAAGGCGAATATGCTTGTGATATATTGTGTTTGAGCCTTAGTAACGAA
66 AAGTCCCGAAGACGAATATGCTGGAAATATATTGTGTTTGAGCCTTAGTAACGAA
* *
183885858 AATGAAATATGTATGTCCAATGATTATTGATGTATGTGT-CATGAGAAATTGAATGATATCCGGG
1 AATGAAATATGGATGT-CAATGATTATTGAT-TATGTGTGCATGAGAAATTGAATGATACCCGGG
183885922 CTAAG-CCCGAAGAC-AATTATGCTGGAAATTATAT
64 CTAAGTCCCGAAGACGAA-TATGCTGGAAA-TATAT
183885956 CCGGGTTAAG
Statistics
Matches: 83, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
119 2 0.02
120 31 0.37
121 43 0.52
122 7 0.08
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (120 bp):
AATGAAATATGGATGTCAATGATTATTGATTATGTGTGCATGAGAAATTGAATGATACCCGGGCT
AAGTCCCGAAGACGAATATGCTGGAAATATATTGTGTTTGAGCCTTAGTAACGAA
Found at i:183885979 original size:40 final size:40
Alignment explanation
Indices: 183885913--183886079 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
183885903 AAATTGAATG
* * *
183885913 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
183885952 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
183885992 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
183886032 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
183886072 ATATCCGG
1 ATATCCGG
183886080 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:183893997 original size:40 final size:40
Alignment explanation
Indices: 183893912--183894062 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
183893902 AATTGAATGA
* * *
183893912 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
183893952 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
183893993 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
183894032 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
183894063 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:183894076 original size:40 final size:40
Alignment explanation
Indices: 183893949--183894078 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
183893939 ATGCTGGAAA
* * * *
183893949 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
183893989 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
183894029 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
183894069 TTATATCCGG
1 TTATATCCGG
183894079 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:183898981 original size:48 final size:48
Alignment explanation
Indices: 183898858--183898988 Score: 190
Period size: 48 Copynumber: 2.7 Consensus size: 48
183898848 TCTCGTATCG
* **
183898858 ATGCCATGTCCTAGACATGGTCTTACAAGAAATCACATAACGATGCCA
1 ATGCCATGTCCTAGACATGGTCTTACATGGGATCACATAACGATGCCA
* * * * *
183898906 AGGCCATTTCCCAGATATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATGTCCTAGACATGGTCTTACATGGGATCACATAACGATGCCA
183898954 ATGCCATGTCCTAGACATGGTCTTACATGGGATCA
1 ATGCCATGTCCTAGACATGGTCTTACATGGGATCA
183898989 TAATGCCACA
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 71 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCTAGACATGGTCTTACATGGGATCACATAACGATGCCA
Found at i:183899014 original size:37 final size:37
Alignment explanation
Indices: 183898970--183899054 Score: 107
Period size: 37 Copynumber: 2.3 Consensus size: 37
183898960 TGTCCTAGAC
* *
183898970 ATGGTCTTACATGGGATCATAATGCCACAGCCCAGCT
1 ATGGTCTTACATGGCATCACAATGCCACAGCCCAGCT
* * * * *
183899007 ATTGTCTTACATGTCATTACGATGCCATAGCCCAGCT
1 ATGGTCTTACATGGCATCACAATGCCACAGCCCAGCT
183899044 ATGGTCTTACA
1 ATGGTCTTACA
183899055 CGTACTCACA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (37 bp):
ATGGTCTTACATGGCATCACAATGCCACAGCCCAGCT
Found at i:183901902 original size:18 final size:18
Alignment explanation
Indices: 183901862--183901896 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
183901852 CTGCTCACAC
183901862 AAGCTGACAATCAGGACA
1 AAGCTGACAATCAGGACA
*
183901880 AAGCTGACAGTCAGGAC
1 AAGCTGACAATCAGGAC
183901897 TTAGCTACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.23, G:0.26, T:0.11
Consensus pattern (18 bp):
AAGCTGACAATCAGGACA
Found at i:183903875 original size:20 final size:20
Alignment explanation
Indices: 183903850--183903891 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
183903840 AATATGCAAG
183903850 TATGTCAATTATAGCTTCTA
1 TATGTCAATTATAGCTTCTA
183903870 TATGTCAATTATAGCTTCTA
1 TATGTCAATTATAGCTTCTA
183903890 TA
1 TA
183903892 ATTGCAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.45
Consensus pattern (20 bp):
TATGTCAATTATAGCTTCTA
Done.