Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 591 of 770
Found at i:184844900 original size:49 final size:49
Alignment explanation
Indices: 184844831--184845139 Score: 480
Period size: 49 Copynumber: 6.4 Consensus size: 49
184844821 TTTACCACAT
*
184844831 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
184844880 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
184844929 ATATACATATACTTTCACATTCA-CACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
184844977 ATATACATA-ACTTTC-CATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * * *
184845024 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
184845073 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
184845122 ATATATATACATTTTCAC
1 ATATACATACACTTTCAC
184845140 GAATCTTGAT
Statistics
Matches: 247, Mismatches: 10, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
46 6 0.02
47 40 0.16
48 39 0.16
49 162 0.66
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (49 bp):
ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:184845072 original size:144 final size:147
Alignment explanation
Indices: 184844831--184845139 Score: 480
Period size: 144 Copynumber: 2.1 Consensus size: 147
184844821 TTTACCACAT
* *
184844831 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
1 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
* *
184844896 ACATTCACCACATCGGCCATTAGGCCTTATCACATATACATATACTTTCACATTCA-CACATCGG
66 ACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGG
*
184844960 CCATTAGGCCTTATCAC
131 CCATTAGGCCTCATCAC
*
184844977 ATATACATA-ACTTTC-CATTCACCACATCGGCCATTAGGCCTTATCACATATACATACATTTTC
1 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
* * * * *
184845040 GCATTCATCGCATCGGCCATTAGGCCTCATCACATATATATACATTTTCACATTCATCACATCGG
66 ACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGG
184845105 CCATTAGGCCTCATCAC
131 CCATTAGGCCTCATCAC
* *
184845122 ATATATATACATTTTCAC
1 ATATACATACACTTTCAC
184845140 GAATCTTGAT
Statistics
Matches: 147, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
144 95 0.65
145 38 0.26
146 13 0.09
147 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (147 bp):
ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
ACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGG
CCATTAGGCCTCATCAC
Found at i:184849213 original size:40 final size:40
Alignment explanation
Indices: 184848977--184849200 Score: 378
Period size: 40 Copynumber: 5.6 Consensus size: 40
184848967 CCAGCATGAT
* * * *
184848977 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
184849017 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
184849057 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
184849097 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
184849137 TGCTCGTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
184849177 TGCTCTTCGGAACTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATA
184849201 TAACCACAAG
Statistics
Matches: 177, Mismatches: 7, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
39 7 0.04
40 170 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:184849326 original size:40 final size:40
Alignment explanation
Indices: 184848977--184849317 Score: 361
Period size: 40 Copynumber: 8.6 Consensus size: 40
184848967 CCAGCATGAT
* * *
184848977 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
184849017 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *
184849057 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *
184849097 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *
184849137 TGCTCGTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * *
184849177 TGCTCTTCGGAACTTAG-CCGGATATAACCACAAGCAC-AA
1 TGCTCTTCGGAACTTAGCCCGGATA-CATCACTAGCACGAA
** * * * * *
184849216 TTGC-CTTCGGGTCTTAACCCGGGTATAACAACTCA-CACAAA
1 -TGCTCTTCGGAACTTAGCCCGGATACATC-ACT-AGCACGAA
** * **
184849257 TGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAAA
1 TGCTCTTCGGAACTTAGCCCGGATACA-TCACTAGCACGAA
*
184849297 TGC-CTTCGGGACTTAGCCCGG
1 TGCTCTTCGGAACTTAGCCCGG
184849318 TATCATTCAA
Statistics
Matches: 271, Mismatches: 22, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
39 22 0.08
40 245 0.90
41 4 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:184851228 original size:37 final size:36
Alignment explanation
Indices: 184851178--184851263 Score: 145
Period size: 37 Copynumber: 2.3 Consensus size: 36
184851168 TACGAAGTCT
184851178 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
184851214 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
*
184851251 TCACCCGAACATA
1 T-ACCCGGACATA
184851264 TTTCCAAGTT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
36 1 0.02
37 46 0.98
ACGTcount: A:0.27, C:0.34, G:0.19, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:184851401 original size:49 final size:49
Alignment explanation
Indices: 184851332--184851642 Score: 489
Period size: 49 Copynumber: 6.4 Consensus size: 49
184851322 TTTACCACAT
*
184851332 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
184851381 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
184851430 ATATACATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
184851479 ATATACATATACTTTC-CATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * * *
184851527 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
184851576 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
184851625 ATATATATACATTTTCAC
1 ATATACATACACTTTCAC
184851643 GAATCTTGAT
Statistics
Matches: 248, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
48 45 0.18
49 203 0.82
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (49 bp):
ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:184851514 original size:146 final size:148
Alignment explanation
Indices: 184851312--184851629 Score: 487
Period size: 146 Copynumber: 2.2 Consensus size: 148
184851302 ATTCACATTA
* * * * *
184851312 GCCATTCGGCTTTACCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 GCCATTAGGCCTTATCACATATACATATA-ACTTTCACATTCACCACATCGGCCATTAGGCCTTA
* *
184851377 TCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATATAC
65 TCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACAC
184851442 TTTCACATTCATCACATCG
130 TTTCACATTCATCACATCG
184851461 GCCATTAGGCCTTATCACATATACATAT-ACTTTC-CATTCACCACATCGGCCATTAGGCCTTAT
1 GCCATTAGGCCTTATCACATATACATATAACTTTCACATTCACCACATCGGCCATTAGGCCTTAT
* * * * * *
184851524 CACATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCACATATATATACATT
66 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACT
184851589 TTCACATTCATCACATCG
131 TTCACATTCATCACATCG
*
184851607 GCCATTAGGCCTCATCACATATA
1 GCCATTAGGCCTTATCACATATA
184851630 TATACATTTT
Statistics
Matches: 155, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
146 125 0.81
147 6 0.04
149 24 0.15
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (148 bp):
GCCATTAGGCCTTATCACATATACATATAACTTTCACATTCACCACATCGGCCATTAGGCCTTAT
CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACT
TTCACATTCATCACATCG
Found at i:184859526 original size:46 final size:44
Alignment explanation
Indices: 184859382--184859590 Score: 151
Period size: 46 Copynumber: 4.5 Consensus size: 44
184859372 ATTGTGAGCT
* * * *
184859382 AGTGTAAGACATGTCTGGGACATGCATCGACC-ACATTATGA-GAGAC
1 AGTGTAAGACATGTCTAGGACATGCATCG-CCTAC--GA-GACGTGTC
* * *
184859428 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTA--AGACGAGTGC
1 AGTGTAAGA-CATGTCTAGGACAT-GCATC-GC-CTACGAGACGTGT-C
*
184859475 TAGTGTAAGGCATGTCTAGGACATGCATCAGCCT-CGAGACGTAAGTC
1 -AGTGTAAGACATGTCTAGGACATGCATC-GCCTACGAGACGT--GTC
* *
184859522 AGTGTAAGACATGTCTAGGACATGCATCGGCTACGAGATGTGTC
1 AGTGTAAGACATGTCTAGGACATGCATCGCCTACGAGACGTGTC
184859566 AGTGTAAGACTATGTCT-GAGACATG
1 AGTGTAAGAC-ATGTCTAG-GACATG
184859591 GTATCTGCAA
Statistics
Matches: 138, Mismatches: 10, Indels: 31
0.77 0.06 0.17
Matches are distributed among these distances:
44 14 0.10
45 18 0.13
46 59 0.43
47 29 0.21
48 16 0.12
49 1 0.01
50 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTAGGACATGCATCGCCTACGAGACGTGTC
Found at i:184862063 original size:40 final size:40
Alignment explanation
Indices: 184861989--184862199 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
184861979 TCTTCGAAAT
** * *
184861989 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
184862027 TTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* **
184862067 TTAGCCCAGATATAGTCGGTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
184862107 TTAGCCCGGATATAGTAACTCA-CACAAATGCCTTCAGATC
1 TTAGCCCGGATATAGTCACT-AGCACAAATGCCTTCGGGTC
* * * *
184862147 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
184862187 TTAGCCCGGATAT
1 TTAGCCCGGATAT
184862200 CATTCGAATA
Statistics
Matches: 142, Mismatches: 27, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
38 4 0.03
39 16 0.11
40 121 0.85
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:184868224 original size:40 final size:39
Alignment explanation
Indices: 184868167--184868351 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
184868157 ATTAAATGAT
* * *
184868167 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
184868207 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
184868247 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
184868287 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
184868327 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
184868352 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:184868303 original size:80 final size:80
Alignment explanation
Indices: 184868166--184868372 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
184868156 AATTAAATGA
* * ** * *
184868166 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
184868231 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
184868244 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
184868309 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
184868326 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
184868373 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:184868357 original size:40 final size:39
Alignment explanation
Indices: 184868165--184868372 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
184868155 CAATTAAATG
* * ** *
184868165 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
184868205 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
184868245 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
184868285 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
184868325 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
184868365 ATATCCGG
1 ATATCCGG
184868373 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:184876355 original size:40 final size:39
Alignment explanation
Indices: 184876171--184876377 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
184876161 CAATTAAATG
* * * *
184876171 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTT
* * * * *
184876211 A-ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG-TT
* *
184876250 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGTT
* *
184876290 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTT
* * *
184876330 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTT
184876370 ATATCCGG
1 ATATCCGG
184876378 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 20, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.23
40 107 0.75
41 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGTT
Found at i:184881416 original size:31 final size:31
Alignment explanation
Indices: 184881378--184881440 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
184881368 CTTTTCACAC
184881378 TTCATATTTCATAACACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
** **
184881409 TTCATATTTCATATTACTGGGTTGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
184881440 T
1 T
184881441 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.40
Consensus pattern (31 bp):
TTCATATTTCATAACACTGGGCCGAAGCCTT
Found at i:184881740 original size:25 final size:24
Alignment explanation
Indices: 184881634--184881779 Score: 197
Period size: 25 Copynumber: 6.0 Consensus size: 24
184881624 GCTTTATCAT
*
184881634 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
184881659 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
184881682 ATAACTGGGGCATAAACCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
184881706 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
*
184881731 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
*
184881756 ATAATTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
184881780 CACTTCCTCC
Statistics
Matches: 112, Mismatches: 6, Indels: 7
0.90 0.05 0.06
Matches are distributed among these distances:
23 18 0.16
24 39 0.35
25 55 0.49
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:184881854 original size:20 final size:20
Alignment explanation
Indices: 184881829--184881894 Score: 105
Period size: 20 Copynumber: 3.3 Consensus size: 20
184881819 TATGAATACC
184881829 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
184881849 TCATGTGCATATCATGCATG
1 TCATGTGCATATCATACATA
184881869 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
184881889 CCATGT
1 TCATGT
184881895 TTATTAAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:184881859 original size:11 final size:11
Alignment explanation
Indices: 184881829--184881883 Score: 64
Period size: 11 Copynumber: 5.4 Consensus size: 11
184881819 TATGAATACC
184881829 TCATGTGCATA
1 TCATGTGCATA
*
184881840 TCA--TACATA
1 TCATGTGCATA
184881849 TCATGTGCATA
1 TCATGTGCATA
*
184881860 TCA--TGCATG
1 TCATGTGCATA
184881869 TCATGTGCATA
1 TCATGTGCATA
184881880 TCAT
1 TCAT
184881884 ACATACCATG
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 16 0.44
11 20 0.56
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:184888877 original size:31 final size:31
Alignment explanation
Indices: 184888839--184888901 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
184888829 CTTTTCACAC
184888839 TTCATATTTCATAACACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
**
184888870 TTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
184888901 T
1 T
184888902 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTCATATTTCATAACACTGGGCCGAAGCCTT
Found at i:184889238 original size:2 final size:2
Alignment explanation
Indices: 184889231--184889259 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
184889221 ATCTATGCAC
184889231 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
184889260 AGGTATCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:184889978 original size:39 final size:39
Alignment explanation
Indices: 184889923--184890054 Score: 194
Period size: 39 Copynumber: 3.4 Consensus size: 39
184889913 TGCATGGTAT
* *
184889923 TGGAAAAATATTCGGACTTGAAGTCCACAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
*
184889962 TGGAAATATATCCGGACTTGAAGTCCGCAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
* * *
184890001 TGGAAATATATCCGGACTTAAAGTCCGCAGGC-TAAGTGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTA-TGC
184890040 TGGAAAAATATCCGG
1 TGGAAAAATATCCGG
184890055 GCTAAGTCCC
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
38 2 0.02
39 84 0.98
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (39 bp):
TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
Found at i:184890079 original size:39 final size:39
Alignment explanation
Indices: 184889959--184890252 Score: 299
Period size: 39 Copynumber: 7.5 Consensus size: 39
184889949 ACAGGCTTTA
* * * **
184889959 TGCTGGAAATATATCCGGACTTGAAGT-CCGCAGGC-TTTA
1 TGCTGGTAATATATCCGGGC-T-AAGTCCCGAAGGCATTCG
* * * **
184889998 TGCTGGAAATATATCCGGACTTAAAGT-CCGCAGGC-TAAG
1 TGCTGGTAATATATCCGGGC-T-AAGTCCCGAAGGCATTCG
* *
184890037 TGCTGGAAAAATATCCGGGCTAAGTCCCGAAGGCATTCG
1 TGCTGGTAATATATCCGGGCTAAGTCCCGAAGGCATTCG
* *
184890076 TGCTGGTATTATATCCGGGCTAAGTCCTGAAGGCATTCG
1 TGCTGGTAATATATCCGGGCTAAGTCCCGAAGGCATTCG
** *
184890115 TGCTGGTGCTATATCCAGGCTAAGTCCCGAAGGCATTCG
1 TGCTGGTAATATATCCGGGCTAAGTCCCGAAGGCATTCG
** *
184890154 TGCTGGTGCTATATCCAGGCTAAGTCCCGAAGGCATTCG
1 TGCTGGTAATATATCCGGGCTAAGTCCCGAAGGCATTCG
*** *
184890193 TGCTGGCGTTATATCCAGGCTAAGTCCCGAAGGCATTCG
1 TGCTGGTAATATATCCGGGCTAAGTCCCGAAGGCATTCG
*
184890232 TGCTGGTATTATATCCGGGCT
1 TGCTGGTAATATATCCGGGCT
184890253 TAAAGTCCTG
Statistics
Matches: 231, Mismatches: 22, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
37 4 0.02
38 8 0.03
39 219 0.95
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (39 bp):
TGCTGGTAATATATCCGGGCTAAGTCCCGAAGGCATTCG
Found at i:184890080 original size:78 final size:78
Alignment explanation
Indices: 184889930--184890260 Score: 293
Period size: 78 Copynumber: 4.2 Consensus size: 78
184889920 TATTGGAAAA
* * *
184889930 ATATTCGGACTTGAAGTCC-ACAGGCTTTA-TGCTGGAAATATATCC-GGACTTGAAGT-CCGCA
1 ATATCCGGACTT-AAGTCCGA-AGGCATTAGTGCTGGAAATATATCCAGG-C-T-AAGTCCCGAA
** *
184889991 GGC-TTTATGCTGGAAAT
61 GGCATTCGTGCTGGTAAT
* * * *
184890008 ATATCCGGACTTAAAGTCCGCAGGC-TAAGTGCTGGAAAAATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGACTT-AAGTCCGAAGGCATTAGTGCTGGAAATATATCCAGGCTAAGTCCCGAAGGCA
*
184890072 TTCGTGCTGGTATT
65 TTCGTGCTGGTAAT
* * ***
184890086 ATATCCGGGC-TAAGTCCTGAAGGCATTCGTGCTGGTGCTATATCCAGGCTAAGTCCCGAAGGCA
1 ATATCCGGACTTAAGTCC-GAAGGCATTAGTGCTGGAAATATATCCAGGCTAAGTCCCGAAGGCA
**
184890150 TTCGTGCTGGTGCT
65 TTCGTGCTGGTAAT
* ***
184890164 ATATCCAGG-C-TAAGTCCCGAAGGCATTCGTGCTGGCGTTATATCCAGGCTAAGTCCCGAAGGC
1 ATATCC-GGACTTAAGT-CCGAAGGCATTAGTGCTGGAAATATATCCAGGCTAAGTCCCGAAGGC
*
184890227 ATTCGTGCTGGTATT
64 ATTCGTGCTGGTAAT
*
184890242 ATATCCGGGCTTAAAGTCC
1 ATATCCGGACTT-AAGTCC
184890261 TGCATGCTTT
Statistics
Matches: 216, Mismatches: 25, Indels: 23
0.82 0.09 0.09
Matches are distributed among these distances:
76 10 0.05
77 18 0.08
78 175 0.81
79 9 0.04
80 4 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (78 bp):
ATATCCGGACTTAAGTCCGAAGGCATTAGTGCTGGAAATATATCCAGGCTAAGTCCCGAAGGCAT
TCGTGCTGGTAAT
Found at i:184893796 original size:20 final size:20
Alignment explanation
Indices: 184893771--184893810 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
184893761 AGAGGCGTGG
184893771 ATAGTGTGGATGACTTCGAC
1 ATAGTGTGGATGACTTCGAC
184893791 ATAGTGTGGATGACTTCGAC
1 ATAGTGTGGATGACTTCGAC
184893811 TTTATTGATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (20 bp):
ATAGTGTGGATGACTTCGAC
Found at i:184894343 original size:40 final size:40
Alignment explanation
Indices: 184894274--184894414 Score: 174
Period size: 40 Copynumber: 3.5 Consensus size: 40
184894264 ACCAAGGCTA
* * * * *
184894274 CGGGACTTAACCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* *
184894314 CGGGTCTTAGCCCGGATTTAACAACTTGCACGAATGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* * * *
184894354 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
*
184894394 CGGGTCTTAACCCGGATATAA
1 CGGGTCTTAGCCCGGATATAA
184894415 TTTTCAGCAT
Statistics
Matches: 86, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 86 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
Found at i:184894429 original size:40 final size:40
Alignment explanation
Indices: 184894301--184894452 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
184894291 ATCACGATTT
* * * * *
184894301 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
184894341 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
184894381 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
184894421 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
184894453 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:184902363 original size:40 final size:40
Alignment explanation
Indices: 184902289--184902434 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
184902279 CCGCACCAAG
* * * * * *
184902289 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
184902329 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
184902369 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
184902409 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
184902435 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:184902449 original size:40 final size:40
Alignment explanation
Indices: 184902321--184902471 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
184902311 ATCACGATTT
* * * * *
184902321 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
184902361 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
184902401 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* *
184902441 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
184902472 CATTCAATTT
Statistics
Matches: 97, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
39 17 0.18
40 78 0.80
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:184904785 original size:4 final size:4
Alignment explanation
Indices: 184904776--184904814 Score: 53
Period size: 4 Copynumber: 9.5 Consensus size: 4
184904766 TTTATTTTGG
184904776 TTAT TTAT TTAT TTATT TTGAT TTAT TT-T TTAT TTAT TT
1 TTAT TTAT TTAT TTA-T TT-AT TTAT TTAT TTAT TTAT TT
184904815 TTTTTTTTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
3 3 0.09
4 22 0.69
5 6 0.19
6 1 0.03
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:184904792 original size:21 final size:21
Alignment explanation
Indices: 184904766--184904815 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
184904756 TAATTTGGAC
184904766 TTTATTTTG-GTTATTTATTTA
1 TTTATTTTGAGTTATTT-TTTA
*
184904787 TTTATTTTGATTTATTTTTTA
1 TTTATTTTGAGTTATTTTTTA
184904808 TTTATTTT
1 TTTATTTT
184904816 TTTTTTTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 21 0.78
22 6 0.22
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (21 bp):
TTTATTTTGAGTTATTTTTTA
Found at i:184904816 original size:10 final size:10
Alignment explanation
Indices: 184904783--184904816 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
184904773 TGGTTATTTA
184904783 TTTATTTATT
1 TTTATTTATT
*
184904793 TTGATTTATTT
1 TTTATTTA-TT
184904804 TTTATTTATT
1 TTTATTTATT
184904814 TTT
1 TTT
184904817 TTTTTTTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (10 bp):
TTTATTTATT
Found at i:184905993 original size:15 final size:15
Alignment explanation
Indices: 184905955--184906010 Score: 51
Period size: 17 Copynumber: 3.5 Consensus size: 15
184905945 CTTACCTTTG
184905955 TTTATTTATTTATTATA
1 TTTATTTA--TATTATA
184905972 TTTATTTATATTA-A
1 TTTATTTATATTATA
*
184905986 TTTGATTTGATTTTATA
1 TTT-ATTT-ATATTATA
*
184906003 ATTATTTA
1 TTTATTTA
184906011 GACATACCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
14 4 0.12
15 10 0.29
16 9 0.26
17 11 0.32
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (15 bp):
TTTATTTATATTATA
Found at i:184906223 original size:15 final size:15
Alignment explanation
Indices: 184906203--184906234 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
184906193 ACAAAGTGCT
*
184906203 TTCTATTTGATTAAA
1 TTCTATTTCATTAAA
184906218 TTCTATTTCATTAAA
1 TTCTATTTCATTAAA
184906233 TT
1 TT
184906235 GATACACAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.03, T:0.56
Consensus pattern (15 bp):
TTCTATTTCATTAAA
Found at i:184907617 original size:23 final size:22
Alignment explanation
Indices: 184907582--184907632 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
184907572 ATGTCACTTT
184907582 TTAGAA-TAATGCAGCCAAGCCG
1 TTAGAATTAATGCAG-CAAGCCG
* *
184907604 TTAGAATTAATGCAGTAATCCG
1 TTAGAATTAATGCAGCAAGCCG
184907626 TTAGAAT
1 TTAGAAT
184907633 CAAGTAGGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 18 0.69
23 8 0.31
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (22 bp):
TTAGAATTAATGCAGCAAGCCG
Found at i:184909491 original size:42 final size:41
Alignment explanation
Indices: 184909334--184909508 Score: 145
Period size: 42 Copynumber: 4.2 Consensus size: 41
184909324 ACACATAGAA
* * ***
184909334 TCATACCAATTCCATATCCCAGATATGGTCTTACATGGGATC
1 TCATAACAATGCCATATCCCAGATATGGTCTTACA-CAAATC
* * * * *
184909376 TCATATCATTGCCTATAGCCCAAATATGGTCTTACACAATTC
1 TCATAACAATGCC-ATATCCCAGATATGGTCTTACACAAATC
* * * * * *
184909418 TCATATCGATACCATGTCCCAGACATAGTCTTACACAAAATC
1 TCATAACAATGCCATATCCCAGATATGGTCTTACAC-AAATC
*
184909460 TCATAACAATGCCATATCTCAGATATGGTCTTACACGTAAA-C
1 TCATAACAATGCCATATCCCAGATATGGTCTTACAC--AAATC
184909502 TCATAAC
1 TCATAAC
184909509 CCTAATGTCA
Statistics
Matches: 104, Mismatches: 26, Indels: 6
0.76 0.19 0.04
Matches are distributed among these distances:
41 18 0.17
42 63 0.61
43 23 0.22
ACGTcount: A:0.33, C:0.26, G:0.11, T:0.30
Consensus pattern (41 bp):
TCATAACAATGCCATATCCCAGATATGGTCTTACACAAATC
Found at i:184917129 original size:44 final size:45
Alignment explanation
Indices: 184917076--184917176 Score: 123
Period size: 44 Copynumber: 2.2 Consensus size: 45
184917066 CATGTCTTTG
* * *
184917076 ATATGGACTTAAATGAATTATTCCTGTCTCCAATGCCATA-TATA
1 ATATGGACTTAAATGAATCAATCCTGTCTCCAAAGCCATATTATA
* ** *
184917120 ATATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTA
1 ATATGGACTTAAATGAATCAATCCTGTCTCCAAAGCCATA-TTATA
184917166 ATATGGACTTA
1 ATATGGACTTA
184917177 CATGGCTCAT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 34 0.71
46 14 0.29
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.35
Consensus pattern (45 bp):
ATATGGACTTAAATGAATCAATCCTGTCTCCAAAGCCATATTATA
Found at i:184917182 original size:46 final size:44
Alignment explanation
Indices: 184917097--184917185 Score: 142
Period size: 46 Copynumber: 2.0 Consensus size: 44
184917087 AATGAATTAT
*
184917097 TCCTGTCTCCAATGCCATATATAATATGGACTTACATGGCTCAA
1 TCCTGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAA
*
184917141 TCCTGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGCTCA
1 TCCTGTCTCCAAAGCCATA--TATAATATGGACTTACATGGCTCA
184917186 TTTCTGTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 18 0.44
46 23 0.56
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (44 bp):
TCCTGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAA
Found at i:184923177 original size:4 final size:4
Alignment explanation
Indices: 184923168--184923224 Score: 62
Period size: 4 Copynumber: 13.5 Consensus size: 4
184923158 TTTTTTATTC
*
184923168 TTAT TTAT TTAT TTAT TTAT TTAT TTATT TTAT TT-T TATTT TTATT TTATT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTA-T TTAT TTAT T-TAT TTA-T TTA-T
184923219 TTAT TT
1 TTAT TT
184923225 TCATTTCAAT
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
3 2 0.04
4 31 0.65
5 15 0.31
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (4 bp):
TTAT
Found at i:184923189 original size:16 final size:17
Alignment explanation
Indices: 184923168--184923224 Score: 73
Period size: 17 Copynumber: 3.4 Consensus size: 17
184923158 TTTTTTATTC
184923168 TTATTTATTTA-TTTAT
1 TTATTTATTTATTTTAT
184923184 TTATTTATTTATTTTAT
1 TTATTTATTTATTTTAT
*
184923201 TT-TTATTTTTATTTTATT
1 TTATT-TATTTATTTTA-T
184923219 TTATTT
1 TTATTT
184923225 TCATTTCAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
16 13 0.36
17 17 0.47
18 4 0.11
19 2 0.06
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (17 bp):
TTATTTATTTATTTTAT
Found at i:184923201 original size:5 final size:5
Alignment explanation
Indices: 184923160--184923251 Score: 65
Period size: 5 Copynumber: 19.0 Consensus size: 5
184923150 CTCCTATCTT
184923160 TTTTA TTCTTA -TTTA -TTTA -TTTA -TTTA -TTTA -TTTA TTTTA TTTTTA
1 TTTTA TT-TTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA
* *
184923206 TTTTTA TTTTA TTTTA TTTTCA TTTCAA TTTGA --TTA TTTTA TTTTA
1 -TTTTA TTTTA TTTTA TTTT-A TTT-TA TTTTA TTTTA TTTTA TTTTA
184923252 CAAGACATAT
Statistics
Matches: 77, Mismatches: 3, Indels: 14
0.82 0.03 0.15
Matches are distributed among these distances:
3 2 0.03
4 23 0.30
5 30 0.39
6 22 0.29
ACGTcount: A:0.22, C:0.03, G:0.01, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:184923225 original size:16 final size:16
Alignment explanation
Indices: 184923160--184923230 Score: 65
Period size: 17 Copynumber: 4.2 Consensus size: 16
184923150 CTCCTATCTT
184923160 TTTTATTCTTATTTATT-
1 TTTTATT-TTATTT-TTA
184923177 TATTTA-TTTATTTATTTA
1 T-TTTATTTTA-TT-TTTA
184923195 TTTTATTTTTATTTTTA
1 TTTTA-TTTTATTTTTA
*
184923212 TTTTATTTTATTTTCA
1 TTTTATTTTATTTTTA
184923228 TTT
1 TTT
184923231 CAATTTGATT
Statistics
Matches: 47, Mismatches: 1, Indels: 13
0.77 0.02 0.21
Matches are distributed among these distances:
16 16 0.34
17 19 0.40
18 8 0.17
19 4 0.09
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTATTTTATTTTTA
Found at i:184923236 original size:22 final size:23
Alignment explanation
Indices: 184923191--184923250 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 23
184923181 TATTTATTTA
* **
184923191 TTTATTTTATTTTTATTTTTA-T
1 TTTATTTTATTTTCATTTCAATT
184923213 TTTATTTTATTTTCATTTCAATT
1 TTTATTTTATTTTCATTTCAATT
184923236 TGATTATTTTATTTT
1 T--TTATTTTATTTT
184923251 ACAAGACATA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 18 0.56
23 2 0.06
25 12 0.38
ACGTcount: A:0.20, C:0.03, G:0.02, T:0.75
Consensus pattern (23 bp):
TTTATTTTATTTTCATTTCAATT
Found at i:184926189 original size:64 final size:64
Alignment explanation
Indices: 184926104--184926355 Score: 333
Period size: 64 Copynumber: 3.9 Consensus size: 64
184926094 TCATTCATAA
* * * *
184926104 CACATTTAGTTAGGTGCATTTGATTCATTTCGATAATAGCATCCTAATTATTTGACATCAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * ** *
184926168 TACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAACGGCCTAATTATTTGACATTAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * *
184926232 CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATGTGTCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * * * * * *
184926296 CACGTCTAATTAGGAGTATTTGATTCATTTTGATCATAGCATTCTAATTAGTTGGCATAA
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAA
184926356 ACATGATACA
Statistics
Matches: 165, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 165 1.00
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.38
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:184926498 original size:45 final size:45
Alignment explanation
Indices: 184926425--184926568 Score: 137
Period size: 45 Copynumber: 3.2 Consensus size: 45
184926415 GTGAAGTCAG
* * **
184926425 ATCTTATATCCCTGAAGTTGCAACGGAATAGATCAAAGATGACAA
1 ATCTTATCTCCCTGAAGTAGCAGTGGAATAGATCAAAGATGACAA
* * * ** * *
184926470 ACCTTATCTCCCTGAAGTGGCAGTGGAATAGGTTGAAGATTACAG
1 ATCTTATCTCCCTGAAGTAGCAGTGGAATAGATCAAAGATGACAA
* * * * *
184926515 GTCTTATTTCCCT-AAGTAGTAGTGGAATAGACCAAAGACGACAA
1 ATCTTATCTCCCTGAAGTAGCAGTGGAATAGATCAAAGATGACAA
184926559 ATCTTATCTC
1 ATCTTATCTC
184926569 TATGTACCGG
Statistics
Matches: 75, Mismatches: 24, Indels: 1
0.75 0.24 0.01
Matches are distributed among these distances:
44 30 0.40
45 45 0.60
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (45 bp):
ATCTTATCTCCCTGAAGTAGCAGTGGAATAGATCAAAGATGACAA
Found at i:184926828 original size:180 final size:181
Alignment explanation
Indices: 184926624--184926995 Score: 559
Period size: 180 Copynumber: 2.1 Consensus size: 181
184926614 TTGATGTAGG
*
184926624 AAGGAAGCAGATTGGGAATTGAAGATTTTATCTCCCTAAAATTGCAGCGGAGCAGATCTTCGCAG
1 AAGGAAGCAGATTGGGAATTGAAGATTTTATCTCCCTAAAATTGCAGCGGAGCAGATCTTCACAG
* * * *
184926689 ATGGCTAATCTTATCTCCATGTATCGGCAATGGGGCAGATTTAAG-CCACCAGCCTTATCTCTTT
66 ATGGCTAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGTCC-CAAACCTTATCTCTCT
184926753 GAGGTAGCAAGAGAGCAGGTTGAAGAGT-AAGTCTTATCTTCCTAAGGTAAC
130 GAGGTAGCAAGAGAGCAGGTTGAAGAGTGAAGTCTTATCTTCCTAAGGTAAC
* * * * *
184926804 AAGGAAGCAGATTGTGAATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGTAGATCTTCATAG
1 AAGGAAGCAGATTGGGAATTGAAGATTTTATCTCCCTAAAATTGCAGCGGAGCAGATCTTCACAG
* *
184926869 ATGGCTAATCTTATCTCCATGTATCGGCAATGGAGTAGATTTGAGTCCCAAACCTTATCTCTCTG
66 ATGGCTAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGTCCCAAACCTTATCTCTCTG
* * * * * *
184926934 AGGTAGTAAGAGAGCAGTTTGAAGATTGAAGTCTTATCTTCTTGAGGTAGC
131 AGGTAGCAAGAGAGCAGGTTGAAGAGTGAAGTCTTATCTTCCTAAGGTAAC
184926985 AAGGAAGCAGA
1 AAGGAAGCAGA
184926996 CTGAAGATTG
Statistics
Matches: 172, Mismatches: 18, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
180 139 0.81
181 33 0.19
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (181 bp):
AAGGAAGCAGATTGGGAATTGAAGATTTTATCTCCCTAAAATTGCAGCGGAGCAGATCTTCACAG
ATGGCTAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGTCCCAAACCTTATCTCTCTG
AGGTAGCAAGAGAGCAGGTTGAAGAGTGAAGTCTTATCTTCCTAAGGTAAC
Found at i:184926970 original size:44 final size:44
Alignment explanation
Indices: 184926922--184927008 Score: 115
Period size: 44 Copynumber: 2.0 Consensus size: 44
184926912 AGTCCCAAAC
* **
184926922 CTTATC-TCTCTGAGGTAGTAA-GAGAGCAGTTTGAAGATTGAAGT
1 CTTATCTTCT-TGAGGTAGCAAGGA-AGCAGACTGAAGATTGAAGT
184926966 CTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAG
1 CTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAG
184927009 ATTGGAAGAG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
44 33 0.87
45 5 0.13
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.29
Consensus pattern (44 bp):
CTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGT
Found at i:184927146 original size:148 final size:147
Alignment explanation
Indices: 184926879--184927152 Score: 451
Period size: 148 Copynumber: 1.9 Consensus size: 147
184926869 ATGGCTAATC
* * * *
184926879 TTATCTCCATGTATCGGCAATGGAGTAGATTTGAGTCCCAAACCTTATCTCTCTGAGGTAGTAAG
1 TTATCTCCATGTACCGGCAATGGAGCAGATTTAAGTCCCAAACCTTATCTCTCTGAGGTAGCAAG
* * *
184926944 AGAGCAGTTTGAAGATTGAAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAG
66 AGAGCAGGTTGAAAATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAG
184927009 ATTGGAAGAGGCAAATA
131 ATTGGAAGAGGCAAATA
184927026 TTATCTCCATGTACCGGCAATGGAGCAGATTTAAG-CCTCAAGACCTTATCTCTCTGAGGTAGCA
1 TTATCTCCATGTACCGGCAATGGAGCAGATTTAAGTCC-CAA-ACCTTATCTCTCTGAGGTAGCA
*
184927090 AGAGAGCAGGTTGAAAATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
64 AGAGAGCAGGTTGAAAATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
184927153 ACAGATCTTA
Statistics
Matches: 117, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
146 2 0.02
147 35 0.30
148 80 0.68
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (147 bp):
TTATCTCCATGTACCGGCAATGGAGCAGATTTAAGTCCCAAACCTTATCTCTCTGAGGTAGCAAG
AGAGCAGGTTGAAAATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAG
ATTGGAAGAGGCAAATA
Found at i:184928296 original size:3 final size:3
Alignment explanation
Indices: 184928288--184928354 Score: 80
Period size: 3 Copynumber: 21.7 Consensus size: 3
184928278 AAAGAAAAAT
* * *
184928288 ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA ATA ATGCA ACA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT--A ATA ATA ATA
*
184928335 GTA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA AT
184928355 TACGTTTTAC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
3 52 0.96
5 2 0.04
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:184938431 original size:17 final size:18
Alignment explanation
Indices: 184938411--184938445 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
184938401 AGTGAACTGC
184938411 AGCAAATTTTC-AACTTA
1 AGCAAATTTTCAAACTTA
184938428 AGCAAATTTTCAAACTTA
1 AGCAAATTTTCAAACTTA
184938446 TGTAAACCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.43, C:0.17, G:0.06, T:0.34
Consensus pattern (18 bp):
AGCAAATTTTCAAACTTA
Found at i:184938707 original size:70 final size:71
Alignment explanation
Indices: 184938599--184938796 Score: 192
Period size: 70 Copynumber: 2.8 Consensus size: 71
184938589 GAGGTTGCGC
* * *
184938599 TATTAAACCTACAAGCCTTAAGATTA-TAGTTGAGAGCTTAAGCTCGT-ACTAACTGTTTTAGAG
1 TATTAAACCTACGAGCCTTAAGATTACAAGTTGAGAGCTTAAGCTC-TCACTAACTATTTT-GAG
184938662 G-CCGTAG
64 GTCCGTAG
** * * *
184938669 TATTAAACCTACGAGCCTTAAGATTACAAG-TGTTAGCTTGAGCTCTCGCTAACTATTTTGGGGT
1 TATTAAACCTACGAGCCTTAAGATTACAAGTTGAGAGCTTAAGCTCTCACTAACTATTTTGAGGT
* *
184938733 CTGTGG
66 CCGTAG
* * * * *
184938739 TATTGAACCTACGAGCCTTAAAATTAC-AGCT-AGGAGCTTGAGTTCTCACTAACTATTT
1 TATTAAACCTACGAGCCTTAAGATTACAAGTTGA-GAGCTTAAGCTCTCACTAACTATTT
184938797 GGGAGGGACT
Statistics
Matches: 107, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
69 6 0.06
70 99 0.93
71 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33
Consensus pattern (71 bp):
TATTAAACCTACGAGCCTTAAGATTACAAGTTGAGAGCTTAAGCTCTCACTAACTATTTTGAGGT
CCGTAG
Found at i:184940066 original size:17 final size:17
Alignment explanation
Indices: 184940046--184940082 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
184940036 TAGATTTAAT
*
184940046 TTTAGCTTTTATTTTTA
1 TTTAGCTTTTATTTATA
*
184940063 TTTATCTTTTATTTATA
1 TTTAGCTTTTATTTATA
184940080 TTT
1 TTT
184940083 TAGAGTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.19, C:0.05, G:0.03, T:0.73
Consensus pattern (17 bp):
TTTAGCTTTTATTTATA
Found at i:184945180 original size:29 final size:29
Alignment explanation
Indices: 184945118--184945220 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
184945108 GTGACGAGAT
* * *
184945118 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
184945147 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
184945176 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
184945205 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
184945221 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:184951911 original size:30 final size:29
Alignment explanation
Indices: 184951817--184951918 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
184951807 TATAGTGAAT
* * *
184951817 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
184951846 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
184951874 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
184951904 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
184951919 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:184957052 original size:40 final size:40
Alignment explanation
Indices: 184956930--184957114 Score: 175
Period size: 40 Copynumber: 4.7 Consensus size: 40
184956920 GCCACTCGTT
* * *
184956930 CAAATACCTTCGGGACATAG-CTCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGTC-CGGATT-TAGTAACTCGCA
* ** * *
184956970 CAAATGCCTTCGGGACTTA-ACCCTATTTAGTAATTCGTA
1 CAAATGCCTTCGGGACTTAGTCCGGATTTAGTAACTCGCA
184957009 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGTCCGGATTTAGTAACTCGCA
* * *
184957049 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGTCCGGATTTAGTAAC-TCGCA
*
184957090 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGTCCGGA
184957115 CATCATTCGA
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 3 0.02
39 25 0.20
40 84 0.68
41 11 0.09
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGTCCGGATTTAGTAACTCGCA
Found at i:184964088 original size:17 final size:17
Alignment explanation
Indices: 184964063--184964125 Score: 74
Period size: 17 Copynumber: 3.7 Consensus size: 17
184964053 AAAAAAAAAG
* *
184964063 TGCGAGCTCACCGAGAC
1 TGCGAGCTCACCAACAC
*
184964080 TGTGAGCTCACCAACAC
1 TGCGAGCTCACCAACAC
184964097 TGCGAGCTCACCAA-AC
1 TGCGAGCTCACCAACAC
*
184964113 TTGAGAGCTCACC
1 -TGCGAGCTCACC
184964126 TACGAGTTCT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
16 2 0.05
17 38 0.95
ACGTcount: A:0.27, C:0.35, G:0.22, T:0.16
Consensus pattern (17 bp):
TGCGAGCTCACCAACAC
Found at i:184966154 original size:46 final size:46
Alignment explanation
Indices: 184966099--184966275 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
184966089 ATGTTTGGGC
*
184966099 ATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
* * *** * * * *
184966145 GTCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTA-ACTAGT
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAAT
* * *
184966191 CATCCGAGCTCTTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
*
184966238 ACCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
184966276 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 25, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
46 70 0.68
47 33 0.32
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
Found at i:184969233 original size:29 final size:29
Alignment explanation
Indices: 184969147--184969230 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
184969137 CACAGTATCG
* * * *
184969147 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGG-TTTCTC
184969177 TAT-TCTGGATTTCTTTATTCTGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGTTTCTC
184969206 TATCTTGGATTTCTTTATTC-GGTTT
1 TATCTTGGATTTCTTTATTCTGGTTT
184969231 TCTTGTTATC
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.10
29 23 0.48
30 20 0.42
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.57
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCTGGTTTCTC
Found at i:184969234 original size:14 final size:15
Alignment explanation
Indices: 184969156--184969234 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
184969146 GTATCTTGGG
*
184969156 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
184969171 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
184969186 TTTCTTTATTCTGG-
1 TTTCTTTATTCTGGA
*
184969200 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
184969215 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
184969229 TTTCTT
1 TTTCTT
184969235 GTTATCTTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
13 2 0.04
14 18 0.33
15 33 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.13, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:184971659 original size:46 final size:44
Alignment explanation
Indices: 184971608--184971782 Score: 201
Period size: 46 Copynumber: 3.9 Consensus size: 44
184971598 ATGTTTGGGC
184971608 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
*** * *
184971652 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
*
184971701 ATCCGAGCTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* *
184971744 ACCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 A-TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
184971783 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 22 0.20
45 19 0.17
46 36 0.33
47 24 0.22
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:184974473 original size:28 final size:28
Alignment explanation
Indices: 184974441--184974511 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 28
184974431 AATGAGATTG
184974441 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
184974469 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
184974497 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
184974512 ACTTACTATA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.88
29 4 0.10
30 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:184980984 original size:29 final size:29
Alignment explanation
Indices: 184980951--184981024 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
184980941 GTGACGAGAT
184980951 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
184980980 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
184981009 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
184981025 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:184981040 original size:29 final size:29
Alignment explanation
Indices: 184981008--184981083 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
184980998 CTGGAAATAT
* *
184981008 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
184981037 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
184981066 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
184981084 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:184981051 original size:58 final size:58
Alignment explanation
Indices: 184980951--184981083 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
184980941 GTGACGAGAT
* * * * * *
184980951 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
184981009 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
184981067 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
184981084 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:184988852 original size:29 final size:29
Alignment explanation
Indices: 184988819--184988892 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
184988809 GTGACGAGAT
184988819 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
184988848 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
184988877 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
184988893 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:184988908 original size:29 final size:29
Alignment explanation
Indices: 184988876--184988949 Score: 89
Period size: 27 Copynumber: 2.6 Consensus size: 29
184988866 CTGGAAATAT
* *
184988876 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
* * *
184988905 ATGGCACT--GTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
184988932 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
184988950 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
27 22 0.59
29 15 0.41
ACGTcount: A:0.23, C:0.20, G:0.35, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:184992944 original size:40 final size:40
Alignment explanation
Indices: 184992899--184993066 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
184992889 CGGAATATAA
184992899 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
184992939 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
184992979 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
184993019 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
184993059 CCGGATAT
1 CCGGATAT
184993067 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:184994954 original size:27 final size:28
Alignment explanation
Indices: 184994890--184994959 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
184994880 GCGTAGATCA
184994890 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
* *
184994918 CGAAATTACCCTTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
* *
184994946 TGATA-TACCCCTAA
1 CGAAATTACCCCTAA
184994960 GGTTTTAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 8 0.22
28 29 0.78
ACGTcount: A:0.44, C:0.24, G:0.09, T:0.23
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:184997382 original size:17 final size:19
Alignment explanation
Indices: 184997340--184997383 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
184997330 ATGAAATTTT
*
184997340 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
184997359 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
184997377 AA-TATTA
1 AATTATTA
184997384 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:184997414 original size:12 final size:12
Alignment explanation
Indices: 184997397--184997421 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
184997387 TATGTATGTT
184997397 TGAAAATTTTTA
1 TGAAAATTTTTA
184997409 TGAAAATTTTTA
1 TGAAAATTTTTA
184997421 T
1 T
184997422 TATTTACTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGAAAATTTTTA
Found at i:184999207 original size:28 final size:28
Alignment explanation
Indices: 184999175--184999243 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
184999165 GCGTAGATCA
184999175 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
184999203 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
184999231 CGATA-TACCCCTA
1 CGAAATTACCCCTA
184999244 GGGTTTTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.43, C:0.28, G:0.09, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:185006988 original size:12 final size:12
Alignment explanation
Indices: 185006971--185006997 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
185006961 ACAGGTTTGG
185006971 CACAACCTAGCA
1 CACAACCTAGCA
185006983 CACAACCTAGCA
1 CACAACCTAGCA
185006995 CAC
1 CAC
185006998 GGGCGTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.44, G:0.07, T:0.07
Consensus pattern (12 bp):
CACAACCTAGCA
Found at i:185017282 original size:27 final size:28
Alignment explanation
Indices: 185017230--185017310 Score: 130
Period size: 28 Copynumber: 2.9 Consensus size: 28
185017220 GTGACGAGAT
*
185017230 TGGCACTAAGTGTGCATGCTGAAATATA
1 TGGCACTAAGTGTGCATGCGGAAATATA
185017258 TGGCACTAAGTGT-CATGCGGAAATATA
1 TGGCACTAAGTGTGCATGCGGAAATATA
185017285 -GGCACTAAGTGTGCATGCTGGAAATA
1 TGGCACTAAGTGTGCATGC-GGAAATA
185017311 CGGCACTGGG
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
26 12 0.24
27 18 0.36
28 20 0.40
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (28 bp):
TGGCACTAAGTGTGCATGCGGAAATATA
Found at i:185017325 original size:27 final size:27
Alignment explanation
Indices: 185017231--185017317 Score: 117
Period size: 27 Copynumber: 3.2 Consensus size: 27
185017221 TGACGAGATT
185017231 GGCACTAAGTGTGCATGCT-GAAATATA
1 GGCACTAAGTGTGCATGCTGGAAATA-A
185017258 TGGCACTAAGTGT-CATGC-GGAAATATA
1 -GGCACTAAGTGTGCATGCTGGAAATA-A
*
185017285 GGCACTAAGTGTGCATGCTGGAAATAC
1 GGCACTAAGTGTGCATGCTGGAAATAA
185017312 GGCACT
1 GGCACT
185017318 GGGTGTGCGA
Statistics
Matches: 55, Mismatches: 1, Indels: 7
0.87 0.02 0.11
Matches are distributed among these distances:
26 12 0.22
27 24 0.44
28 19 0.35
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (27 bp):
GGCACTAAGTGTGCATGCTGGAAATAA
Found at i:185017382 original size:30 final size:28
Alignment explanation
Indices: 185017342--185017441 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
185017332 GAAGGGTATG
* *
185017342 GCACT-AGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
185017371 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
185017399 GCACTAAGTGTGCGAGTTGAATACATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATACA
185017428 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
185017442 GATTCACTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
28 26 0.42
29 24 0.39
30 12 0.19
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:185017405 original size:28 final size:29
Alignment explanation
Indices: 185017370--185017441 Score: 112
Period size: 28 Copynumber: 2.5 Consensus size: 29
185017360 AAAATTGTAC
*
185017370 AGCACTAAGTGTGCGAGTTTG-AT-TATAT
1 AGCACTAAGTGTGCGAG-TTGAATACATAT
185017398 AGCACTAAGTGTGCGAGTTGAATACATAT
1 AGCACTAAGTGTGCGAGTTGAATACATAT
185017427 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
185017442 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 3 0.07
28 19 0.46
29 19 0.46
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGTTGAATACATAT
Found at i:185025439 original size:29 final size:29
Alignment explanation
Indices: 185025308--185025438 Score: 174
Period size: 29 Copynumber: 4.5 Consensus size: 29
185025298 GTGACGAGAT
*
185025308 TGGCACTAAGTGTGCATGCTGAAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
185025337 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
185025366 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
185025395 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
185025424 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
185025439 GGGTTTAAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
29 89 0.99
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:185025462 original size:30 final size:28
Alignment explanation
Indices: 185025426--185025526 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
185025416 GAAGGGTATG
* *
185025426 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* * *
185025456 GCACTAAGTATGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
185025484 GCACTAAGTGTGCGAGTTGAATACATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATACA
185025513 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
185025527 GATTCATATA
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
28 25 0.41
29 19 0.31
30 17 0.28
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:185025491 original size:28 final size:29
Alignment explanation
Indices: 185025455--185025526 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
185025445 AAAATTGTAC
* *
185025455 AGCACTAAGTATGCGAGTTTG-AT-TATAT
1 AGCACTAAGTGTGCGAG-TTGAATACATAT
185025483 AGCACTAAGTGTGCGAGTTGAATACATAT
1 AGCACTAAGTGTGCGAGTTGAATACATAT
185025512 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
185025527 GATTCATATA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 3 0.08
28 18 0.45
29 19 0.47
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGTTGAATACATAT
Found at i:185028751 original size:33 final size:35
Alignment explanation
Indices: 185028673--185028758 Score: 99
Period size: 34 Copynumber: 2.6 Consensus size: 35
185028663 ATATCAGTTA
* *
185028673 GGGCCTTAGCCC-TTTACAGTAACAATAGCAATCT
1 GGGCCTAAGCCCATTTACAGTAACAATAGCAATCG
* * *
185028707 GGGCCTGAGCCCATTT-CAGTAACAGTAGCAGT-G
1 GGGCCTAAGCCCATTTACAGTAACAATAGCAATCG
185028740 GGGCCTAAGCCCA-TTACAG
1 GGGCCTAAGCCCATTTACAG
185028759 AATCAGTATA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
32 2 0.04
33 15 0.33
34 25 0.56
35 3 0.07
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (35 bp):
GGGCCTAAGCCCATTTACAGTAACAATAGCAATCG
Found at i:185032897 original size:40 final size:40
Alignment explanation
Indices: 185032842--185033062 Score: 313
Period size: 40 Copynumber: 5.5 Consensus size: 40
185032832 TATTCGAATG
*
185032842 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
* *
185032882 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CT
*
185032922 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CT
*
185032962 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
* * *
185033002 ATATCCGGGCCAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
* *
185033042 ATATCC-AGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
185033063 ATGCTTGGGT
Statistics
Matches: 164, Mismatches: 14, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
39 13 0.08
40 148 0.90
41 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
Found at i:185036720 original size:29 final size:32
Alignment explanation
Indices: 185036679--185036750 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
185036669 TGTAACATAA
* *
185036679 ATATTTAATTACTTTTTA-T-TTAAG-TAATAG
1 ATATTT-ATTACTTATTATTATTAAGTTAAAAG
*
185036709 GTATTTATTACTTATTATTATTAAGTTAAAAG
1 ATATTTATTACTTATTATTATTAAGTTAAAAG
185036741 ATATTTATTA
1 ATATTTATTA
185036751 ATTAAATAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
29 10 0.29
30 6 0.17
31 5 0.14
32 14 0.40
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.53
Consensus pattern (32 bp):
ATATTTATTACTTATTATTATTAAGTTAAAAG
Found at i:185037133 original size:15 final size:15
Alignment explanation
Indices: 185037113--185037148 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
185037103 AAAATGATAT
* *
185037113 TTATTATAATTATTA
1 TTATTATAATAATAA
185037128 TTATTATAATAATAA
1 TTATTATAATAATAA
185037143 TTATTA
1 TTATTA
185037149 ATTAGTATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TTATTATAATAATAA
Found at i:185051718 original size:6 final size:6
Alignment explanation
Indices: 185051709--185051772 Score: 74
Period size: 6 Copynumber: 10.5 Consensus size: 6
185051699 TTTAATTTCC
* * * *
185051709 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTC ATTTTC ATTTTC ATTTTC
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
*
185051757 ATTTTAT GTTTTT ATT
1 ATTTT-T ATTTTT ATT
185051773 AATTTCACCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
6 49 0.92
7 4 0.08
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.75
Consensus pattern (6 bp):
ATTTTT
Found at i:185051724 original size:18 final size:18
Alignment explanation
Indices: 185051703--185051761 Score: 82
Period size: 18 Copynumber: 3.3 Consensus size: 18
185051693 GTTTAATTTA
* *
185051703 ATTTCCATTTTTATTTTT
1 ATTTTCATTTTTATTTTC
*
185051721 ATTTTTATTTTTATTTTC
1 ATTTTCATTTTTATTTTC
*
185051739 ATTTTCATTTTCATTTTC
1 ATTTTCATTTTTATTTTC
185051757 ATTTT
1 ATTTT
185051762 ATGTTTTTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.73
Consensus pattern (18 bp):
ATTTTCATTTTTATTTTC
Found at i:185056121 original size:27 final size:29
Alignment explanation
Indices: 185056091--185056175 Score: 84
Period size: 29 Copynumber: 3.0 Consensus size: 29
185056081 ACGCAAGAGC
*
185056091 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
185056118 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* ** *
185056147 ATATATTTTCAGTTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
185056176 GTACAATTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 5 0.10
28 3 0.06
29 43 0.84
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.36
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:185056135 original size:29 final size:29
Alignment explanation
Indices: 185056103--185056175 Score: 137
Period size: 29 Copynumber: 2.5 Consensus size: 29
185056093 ATAGTGAATC
185056103 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
185056132 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
185056161 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
185056176 GTACAATTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:185063288 original size:27 final size:29
Alignment explanation
Indices: 185063258--185063342 Score: 84
Period size: 29 Copynumber: 3.0 Consensus size: 29
185063248 ACGCAAGAGC
*
185063258 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
185063285 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* ** *
185063314 ATATATTTTCAGTTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
185063343 GTACAATTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 5 0.10
28 3 0.06
29 43 0.84
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.36
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:185063302 original size:29 final size:29
Alignment explanation
Indices: 185063270--185063342 Score: 137
Period size: 29 Copynumber: 2.5 Consensus size: 29
185063260 ATAGTGAATC
185063270 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
185063299 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
185063328 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
185063343 GTACAATTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:185074044 original size:41 final size:41
Alignment explanation
Indices: 185073999--185074116 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
185073989 TGAAAGATAA
185073999 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
185074040 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
185074070 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
185074111 ATGTAG
1 ATGTAG
185074117 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:185074055 original size:71 final size:71
Alignment explanation
Indices: 185073967--185074130 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
185073957 GAGATGTATC
185073967 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
185074032 AGGACA
66 AGGACA
185074038 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
185074103 AGGACA
66 AGGACA
185074109 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
185074131 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:185080739 original size:27 final size:29
Alignment explanation
Indices: 185080709--185080793 Score: 84
Period size: 29 Copynumber: 3.0 Consensus size: 29
185080699 ACGCAAGAGC
*
185080709 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
185080736 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* ** *
185080765 ATATATTTTCAGTTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
185080794 GTACAATTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 5 0.10
28 3 0.06
29 43 0.84
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.36
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:185080753 original size:29 final size:29
Alignment explanation
Indices: 185080721--185080793 Score: 137
Period size: 29 Copynumber: 2.5 Consensus size: 29
185080711 ATAGTGAATC
185080721 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
185080750 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
185080779 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
185080794 GTACAATTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:185098106 original size:40 final size:40
Alignment explanation
Indices: 185098051--185098300 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
185098041 AACATTGGAA
185098051 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
185098091 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
185098131 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
185098171 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
185098211 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
185098250 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
185098291 CTATATCCGG
1 ATATATCCGG
185098301 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:185100286 original size:31 final size:31
Alignment explanation
Indices: 185100240--185100306 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
185100230 TGGTTGTATT
* *
185100240 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
185100271 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
185100302 TTTTA
1 TTTTA
185100307 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:185100405 original size:43 final size:43
Alignment explanation
Indices: 185100358--185100585 Score: 230
Period size: 43 Copynumber: 5.3 Consensus size: 43
185100348 ATTTGCCAAA
*
185100358 TTTAGCGGCGTTTGTAAAAAAAGCGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAAGCCTTGACC
* * * *
185100401 TTTAGCGGCGTTTGTGGGAAGAGCGCCGCTAAAAGCCTTAACC
1 TTTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAAGCCTTGACC
** * * * *
185100444 TTTAGCATCGCTTT-CACTACAAA-CGCCGCTAAAAGCATTGACC
1 TTTAGCGGCG-TTTGTA-GAAAAAGCGCCGCTAAAAGCCTTGACC
* * * *
185100487 TTTAGCGGCGTTTGTGGGAAAAGTGCCGCTAAAAGCCTTAACC
1 TTTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAAGCCTTGACC
* *
185100530 TTTAGCGGCGCTTT-TCCGACAAA-CGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCG-TTTGT-AGAAAAAGCGCCGCTAAAAGCCTTGACC
*
185100573 TTTAACGGCGTTT
1 TTTAGCGGCGTTT
185100586 TTTCCAATAA
Statistics
Matches: 148, Mismatches: 31, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
42 9 0.06
43 127 0.86
44 12 0.08
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAAGCCTTGACC
Found at i:185100503 original size:86 final size:86
Alignment explanation
Indices: 185100381--185100585 Score: 331
Period size: 86 Copynumber: 2.4 Consensus size: 86
185100371 GTAAAAAAAG
*
185100381 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTGTGGGAAGAGCGCCGCTAAAAGCCTTAACCTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGCCTTAACCTT
* *
185100446 TAGCATCGC-TTTCACTACAAA
66 TAGCAGCGCTTTTC-CGACAAA
* *
185100467 CGCCGCTAAAAGCATTGACCTTTAGCGGCGTTTGTGGGAAAAGTGCCGCTAAAAGCCTTAACCTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGCCTTAACCTT
*
185100532 TAGCGGCGCTTTTCCGACAAA
66 TAGCAGCGCTTTTCCGACAAA
*
185100553 CGCCGCTAAAAGCCTTGACCTTTAACGGCGTTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTT
185100586 TTTCCAATAA
Statistics
Matches: 110, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
86 106 0.96
87 4 0.04
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (86 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGCCTTAACCTT
TAGCAGCGCTTTTCCGACAAA
Found at i:185101983 original size:39 final size:39
Alignment explanation
Indices: 185101922--185102030 Score: 155
Period size: 39 Copynumber: 2.8 Consensus size: 39
185101912 AGTGATGTTT
* *
185101922 ATCCGGACTTAGGGTCCGCAGGCTATGTGTTGGAATTAC
1 ATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTAC
* * *
185101961 ATCCAGACTTAAGGTCCACAGGCTATGTGCTGGAATTAT
1 ATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTAC
* *
185102000 AACCGGACTTAAGGTCCGCAGGCTACGTGCT
1 ATCCGGACTTAAGGTCCGCAGGCTATGTGCT
185102031 AGAAATATGT
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 61 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
ATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTAC
Found at i:185109643 original size:17 final size:17
Alignment explanation
Indices: 185109621--185109653 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
185109611 ACAAAAATTA
*
185109621 AAAAATGAAATTAAACG
1 AAAAATAAAATTAAACG
185109638 AAAAATAAAATTAAAC
1 AAAAATAAAATTAAAC
185109654 AGTCCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.06, G:0.06, T:0.18
Consensus pattern (17 bp):
AAAAATAAAATTAAACG
Found at i:185112695 original size:47 final size:47
Alignment explanation
Indices: 185112642--185112936 Score: 500
Period size: 47 Copynumber: 6.3 Consensus size: 47
185112632 ATAAGATATG
* *
185112642 TATATGTGGTAAAGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
* *
185112689 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATATGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
185112736 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
185112783 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
* *
185112830 TATATGTGATACGGCTGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
* * *
185112877 TATATGTGATAAGGCCAAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
*
185112924 TAAATGTGATAAG
1 TATATGTGATAAG
185112937 TCCCGAAGGG
Statistics
Matches: 234, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 234 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
Found at i:185115634 original size:25 final size:23
Alignment explanation
Indices: 185115575--185115636 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 23
185115565 TTTAATCCTT
* *
185115575 TATTATATATTTCTAAATTTTTTA
1 TATTATTTATTT-TAAATTTTTAA
185115599 T-TTATTTATTTTAAATATTTTAAA
1 TATTATTTATTTTAAAT-TTTT-AA
185115623 TATTATTTATTTTA
1 TATTATTTATTTTA
185115637 CTATAAACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
22 5 0.15
23 13 0.39
24 3 0.09
25 12 0.36
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (23 bp):
TATTATTTATTTTAAATTTTTAA
Found at i:185115785 original size:32 final size:32
Alignment explanation
Indices: 185115723--185115795 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
185115713 TGTCTAACAT
* *
185115723 ATATATTATCTATTATTTATTTATATTTTATC
1 ATATATTATTTATTATTTATTTATACTTTATC
*
185115755 ATATATTATTTATTATGTTGTTTAT-CTTTATC
1 ATATATTATTTATTAT-TTATTTATACTTTATC
*
185115787 -TTTATTATT
1 ATATATTATT
185115796 ATAATTTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
31 8 0.22
32 21 0.58
33 7 0.19
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.64
Consensus pattern (32 bp):
ATATATTATTTATTATTTATTTATACTTTATC
Found at i:185121623 original size:80 final size:80
Alignment explanation
Indices: 185121539--185121687 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
185121529 TATGGTAACC
* * * *
185121539 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
185121603 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
185121619 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
185121684 CCGG
66 CCGG
185121688 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:185121629 original size:40 final size:38
Alignment explanation
Indices: 185121580--185121687 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
185121570 ATCACGATTT
*
185121580 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
185121620 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
185121660 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
185121688 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:185131132 original size:40 final size:40
Alignment explanation
Indices: 185131088--185131340 Score: 264
Period size: 40 Copynumber: 6.5 Consensus size: 40
185131078 GCTACTCGTT
* * *
185131088 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
185131128 CAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
185131168 CAAATGCCTTC-GGACTTA--TCGGA-TTAGTAACTCG-A
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
185131203 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
*
185131243 CAAATGCCTTC-GGATCTTAG---TGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
185131280 CAAATGCCTTC-GGATCTTAG-TCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
185131320 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
185131341 GGACATCATT
Statistics
Matches: 190, Mismatches: 12, Indels: 22
0.85 0.05 0.10
Matches are distributed among these distances:
35 15 0.08
36 15 0.08
37 40 0.21
38 4 0.02
39 38 0.20
40 76 0.40
41 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:185131338 original size:39 final size:39
Alignment explanation
Indices: 185131116--185131331 Score: 288
Period size: 40 Copynumber: 5.6 Consensus size: 39
185131106 AGCCCGGTTA
*
185131116 TAGTAGCTCGCACAAATGCCTTCGGGA-CTTA-TCCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT--CGGATT
185131156 TAGTAACTCGCACAAATGCCTTCGGA-CTTA-TCGGA-T
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCGGATT
185131192 TAGTAACTCG-ACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGT-CGGATT
185131231 TAGTAACTCGCACAAATGCCTTCGGATCTTAGT--GATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCGGATT
*
185131268 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCGGATA
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCGGATT
* *
185131307 TAGTCACTTAGCACAAA-GCCTTCGG
1 TAGTAAC-TCGCACAAATGCCTTCGG
185131332 GACTTAGCCG
Statistics
Matches: 164, Mismatches: 4, Indels: 17
0.89 0.02 0.09
Matches are distributed among these distances:
35 15 0.09
36 15 0.09
37 42 0.26
38 4 0.02
39 36 0.22
40 52 0.32
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCGGATT
Found at i:185131338 original size:76 final size:76
Alignment explanation
Indices: 185131116--185131338 Score: 298
Period size: 75 Copynumber: 2.9 Consensus size: 76
185131106 AGCCCGGTTA
*
185131116 TAGTAGCTCGCACAAATGCCTTCGGGA-CTTA-TCCCGGATTTAGTAACTCGCACAAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-CCGGATTTAGTAACTCGCACAAATGCCTTC
185131179 GGACTTA-TCGGAT
64 GGACTTAGTC-GAT
185131192 TAGTAACTCG-ACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGG
185131256 ATCTTAGT-GATT
66 A-CTTAGTCGA-T
* * *
185131268 TAGTAACTCGCACAAATGCCTTCGGATCTTAGT-CGGATATAGTCACTTAGCACAAA-GCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCACAAATGCCTTC-
185131331 GGACTTAG
64 GGACTTAG
185131339 CCGGACATCA
Statistics
Matches: 135, Mismatches: 4, Indels: 16
0.87 0.03 0.10
Matches are distributed among these distances:
74 3 0.02
75 51 0.38
76 47 0.35
77 34 0.25
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (76 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGG
ACTTAGTCGAT
Found at i:185139302 original size:40 final size:40
Alignment explanation
Indices: 185139258--185139523 Score: 328
Period size: 40 Copynumber: 6.7 Consensus size: 40
185139248 GCCACTCGTT
* * * *
185139258 CAAATACCTTCGGGACATGGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
185139298 CAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
185139338 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
**
185139378 CAAATGCCTTC-GGATCTTATTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
*
185139418 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * *
185139458 CAAATGCCTTC-GGATCTTAGCCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
185139499 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
185139524 CATCATTCGA
Statistics
Matches: 209, Mismatches: 13, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
39 3 0.01
40 193 0.92
41 13 0.06
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:185139376 original size:80 final size:80
Alignment explanation
Indices: 185139286--185139523 Score: 365
Period size: 80 Copynumber: 3.0 Consensus size: 80
185139276 GGCCCGGTTA
*
185139286 TAGTAGCTCGCACAAATGCCTTCGGGA-CTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCG
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCG
185139350 GATCTTAGTCCGGATT
65 GATCTTAGTCCGGATT
*
185139366 TAGTAACTCGCACAAATGCCTTCGGATCTTATTCCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCGG
185139431 ATCTTAGTCCGGATT
66 ATCTTAGTCCGGATT
* * * *
185139446 TAGTAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTCACTTAGCACAAA-GCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTATCCCGGATTTAGTAAC-TCGCACAAATGCCTTC-
*
185139510 GGA-CTTAGCCCGGA
64 GGATCTTAGTCCGGA
185139524 CATCATTCGA
Statistics
Matches: 147, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
79 3 0.02
80 133 0.90
81 11 0.07
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCGG
ATCTTAGTCCGGATT
Found at i:185139523 original size:120 final size:121
Alignment explanation
Indices: 185139258--185139523 Score: 364
Period size: 120 Copynumber: 2.2 Consensus size: 121
185139248 GCCACTCGTT
* * * *
185139258 CAAATACCTTCGGGACATGGCCCGG-TTATAGTAGCTCGCACAAATGCCTTCGGGACTTATCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTATCCCG
* * *
185139322 GATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
66 GATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTAACTAGCA
**
185139378 CAAATGCCTTC-GGATCTTATTCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGA-CTTA-TC
*
185139439 CCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTCACTTAGCA
63 CCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTAAC-TAGCA
185139499 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
185139524 CATCATTCGA
Statistics
Matches: 128, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
119 6 0.05
120 108 0.84
121 14 0.11
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (121 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTATCCCG
GATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTAACTAGCA
Found at i:185145702 original size:93 final size:91
Alignment explanation
Indices: 185145539--185145707 Score: 259
Period size: 93 Copynumber: 1.8 Consensus size: 91
185145529 GGATGGTTGA
* *
185145539 GCATCCGAACTCCTTGAGTTGAGTCCGAGTCACCTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTCACCTATGGATGCGAACGTCCGAACTCGTTGAGTT
185145604 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCG-GTTCGTGAGATGTAACTAG
** *
185145631 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCATTGAGTTGAGTCCGAG-TCACCTATGGATGCGAACGTC-CGAACTCGTTGAG
185145695 TTGAGTCCGGTTC
64 TTGAGTCCGGTTC
185145708 ACGTAGGGGC
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
92 33 0.47
93 37 0.53
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.28
Consensus pattern (91 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTCACCTATGGATGCGAACGTCCGAACTCGTTGAGTT
GAGTCCGGTTCGTGAGATGTAACTAG
Found at i:185154144 original size:38 final size:39
Alignment explanation
Indices: 185154031--185154173 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
185154021 CCGCACAAAG
*
185154031 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
185154071 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
185154110 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
185154148 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
185154174 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:185154152 original size:77 final size:79
Alignment explanation
Indices: 185153991--185154172 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
185153981 TCGTTCAAAC
* * **
185153991 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
185154056 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
185154071 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
185154134 CAATTTGCACAATT
66 CAATTTGCACAATT
185154148 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
185154173 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:185159493 original size:41 final size:41
Alignment explanation
Indices: 185159448--185159565 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
185159438 TGAAAGATAA
185159448 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
185159489 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
185159519 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
185159560 ATGTAG
1 ATGTAG
185159566 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:185159504 original size:71 final size:71
Alignment explanation
Indices: 185159416--185159579 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
185159406 GAGATGTATC
185159416 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
185159481 AGGACA
66 AGGACA
185159487 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
185159552 AGGACA
66 AGGACA
185159558 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
185159580 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:185164021 original size:29 final size:29
Alignment explanation
Indices: 185163989--185164061 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
185163979 CTTCGAGCTC
*
185163989 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
185164018 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
185164047 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
185164062 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:185169285 original size:40 final size:40
Alignment explanation
Indices: 185169219--185169385 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
185169209 AAATTGAATG
* * *
185169219 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
185169258 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
185169298 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
185169338 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
185169378 ATATCCGG
1 ATATCCGG
185169386 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:185177301 original size:40 final size:40
Alignment explanation
Indices: 185177242--185177383 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
185177232 AAATTGAATG
* * *
185177242 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
185177282 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
185177322 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
185177362 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
185177384 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:185177384 original size:40 final size:39
Alignment explanation
Indices: 185177281--185177409 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
185177271 TGCTGGAAAT
* * *
185177281 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
185177321 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
185177361 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
185177401 TATATCCGG
1 TATATCCGG
185177410 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:185179861 original size:12 final size:11
Alignment explanation
Indices: 185179834--185179869 Score: 56
Period size: 12 Copynumber: 3.3 Consensus size: 11
185179824 GAAAATAACC
185179834 AAAATTAA-TA
1 AAAATTAATTA
185179844 AAAATTAATTA
1 AAAATTAATTA
185179855 TAAAATTAATTA
1 -AAAATTAATTA
185179867 AAA
1 AAA
185179870 TTCAACATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 8 0.33
11 5 0.21
12 11 0.46
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AAAATTAATTA
Found at i:185183660 original size:21 final size:21
Alignment explanation
Indices: 185183591--185183660 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
185183581 CACAAATATT
185183591 ATGAACTCAGACCACAACTCA
1 ATGAACTCAGACCACAACTCA
** * * *
185183612 ATGAGTTCGGATGGCACATATATC-
1 ATGAACTCAGA--CCACA-A-CTCA
185183636 ATGAACTCAGACCACAACTCA
1 ATGAACTCAGACCACAACTCA
185183657 ATGA
1 ATGA
185183661 GTTCATATTA
Statistics
Matches: 34, Mismatches: 10, Indels: 10
0.63 0.19 0.19
Matches are distributed among these distances:
20 2 0.06
21 13 0.38
22 4 0.12
23 4 0.12
24 9 0.26
25 2 0.06
ACGTcount: A:0.39, C:0.26, G:0.16, T:0.20
Consensus pattern (21 bp):
ATGAACTCAGACCACAACTCA
Found at i:185184617 original size:31 final size:31
Alignment explanation
Indices: 185184548--185184618 Score: 126
Period size: 31 Copynumber: 2.3 Consensus size: 31
185184538 TGACCCTTGG
185184548 AATTTTGGC-ACAAGCAAGAAGAAGATGGACA
1 AATTTT-GCTACAAGCAAGAAGAAGATGGACA
185184579 AATTTTGCTACAAGCAAGAAGAAGATGGACA
1 AATTTTGCTACAAGCAAGAAGAAGATGGACA
185184610 AATTTTGCT
1 AATTTTGCT
185184619 TTCTTTTTCC
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
30 2 0.05
31 37 0.95
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.23
Consensus pattern (31 bp):
AATTTTGCTACAAGCAAGAAGAAGATGGACA
Done.