Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 592 of 770
Found at i:185186485 original size:32 final size:32
Alignment explanation
Indices: 185186426--185186488 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
185186416 GGTGAAAAAA
***
185186426 AGTTGGTTTAGCTCTCAACTTGGCTAGAATCG
1 AGTTGGTTTAGCTCTCAACTCAACTAGAATCG
185186458 AGTTGGTTTAGCTCTCAACTCAACTAGAATC
1 AGTTGGTTTAGCTCTCAACTCAACTAGAATC
185186489 AAACCATCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (32 bp):
AGTTGGTTTAGCTCTCAACTCAACTAGAATCG
Found at i:185192645 original size:40 final size:40
Alignment explanation
Indices: 185192567--185192653 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 40
185192557 TGATGACATA
* *
185192567 TCGGCTAAATATGGCACTTAGTGTGCGGTTGGGTATAGCT
1 TCGGCTAAATATGGCACTTAGTGTGCAGTTGAGTATAGCT
* *
185192607 TCGGCTAAATTTGGCACTTAGTGTGCAATTTGAG-ATAGCT
1 TCGGCTAAATATGGCACTTAGTGTGC-AGTTGAGTATAGCT
*
185192647 TCAGCTA
1 TCGGCTA
185192654 TGTTCAACAC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
40 37 0.90
41 4 0.10
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (40 bp):
TCGGCTAAATATGGCACTTAGTGTGCAGTTGAGTATAGCT
Found at i:185194497 original size:40 final size:40
Alignment explanation
Indices: 185194452--185194639 Score: 270
Period size: 40 Copynumber: 4.7 Consensus size: 40
185194442 ATAACCACAA
* *
185194452 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
185194492 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
185194532 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * *
185194572 GTACAAATGCCTTCGGGTCTTAACCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* * *
185194612 GCATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
185194640 GTATCATTCA
Statistics
Matches: 134, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 132 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:185194537 original size:80 final size:79
Alignment explanation
Indices: 185194432--185194643 Score: 309
Period size: 80 Copynumber: 2.7 Consensus size: 79
185194422 TCTTCGGAAT
* *
185194432 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
185194496 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* * *
185194511 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGTAC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
185194576 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* * * *
185194591 TTAACCCGGATATAATCACTAGCATAAATGCCTTCGGGGCTTAGCCCGGGTAT
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
185194644 CATTCAATTG
Statistics
Matches: 119, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
79 5 0.04
80 113 0.95
81 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACA
AATGCCTTCGGGTC
Found at i:185202578 original size:40 final size:40
Alignment explanation
Indices: 185202533--185202719 Score: 279
Period size: 40 Copynumber: 4.7 Consensus size: 40
185202523 ATAACCACAA
* *
185202533 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
185202573 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
185202613 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
185202653 GCACAAATGCCTTCGGGTCTTAACCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* *
185202693 GCATAAATGCCTTCGGG-CTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
185202720 GTATCATTCA
Statistics
Matches: 136, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 9 0.07
40 125 0.92
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:185202618 original size:80 final size:79
Alignment explanation
Indices: 185202513--185202723 Score: 318
Period size: 80 Copynumber: 2.7 Consensus size: 79
185202503 TCTTCGGAAT
* *
185202513 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
185202577 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* *
185202592 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
185202657 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* * *
185202672 TTAACCCGGATATAATCACTAGCATAAATGCCTTCGGG-CTTAGCCCGGGTAT
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
185202724 CATTCAATGC
Statistics
Matches: 120, Mismatches: 9, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
79 17 0.14
80 102 0.85
81 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACA
AATGCCTTCGGGTC
Found at i:185207291 original size:27 final size:27
Alignment explanation
Indices: 185207194--185207304 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
185207184 AGCATGGCTG
* *
185207194 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
185207220 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
185207248 CCA-AACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
185207274 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
185207301 CCAG
1 CCAG
185207305 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
25 3 0.04
26 25 0.34
27 30 0.41
28 16 0.22
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:185207293 original size:53 final size:53
Alignment explanation
Indices: 185207198--185207303 Score: 151
Period size: 53 Copynumber: 2.0 Consensus size: 53
185207188 TGGCTGCCAG
* *
185207198 AACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACCA
1 AACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCA
* * *
185207251 AACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCA
1 AACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCA
185207304 GGACGCTTCC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
53 29 0.62
54 18 0.38
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.16
Consensus pattern (53 bp):
AACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCA
Found at i:185211331 original size:40 final size:39
Alignment explanation
Indices: 185211223--185211344 Score: 113
Period size: 40 Copynumber: 3.1 Consensus size: 39
185211213 TCTTCGGAAT
* *
185211223 TTAG-CCGGATATAACCACAAGCACAATTGCCTTC-GGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** *
185211261 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* *
185211301 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGATC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
185211341 TTAG
1 TTAG
185211345 TGTGACAGCC
Statistics
Matches: 65, Mismatches: 16, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
38 3 0.05
39 20 0.31
40 42 0.65
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:185213191 original size:40 final size:40
Alignment explanation
Indices: 185213029--185213230 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
185213019 CGAATGATGT
*
185213029 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
185213069 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
185213108 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
185213146 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
185213187 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
185213227 CCGG
1 CCGG
185213231 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:185213193 original size:78 final size:79
Alignment explanation
Indices: 185213028--185213179 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
185213018 TCGAATGATG
* * *
185213028 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
185213093 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
185213108 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
185213171 GTGCAAGTC
65 GTGCAAGTC
185213180 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:185220895 original size:78 final size:80
Alignment explanation
Indices: 185220752--185220898 Score: 201
Period size: 78 Copynumber: 1.9 Consensus size: 80
185220742 TCGAATGATG
* * *
185220752 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
185220817 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* * **
185220832 TCCGGGCTAA-TCCTGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
185220894 CGTGC
65 CGTGC
185220899 AAGTCGCTAT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
77 1 0.02
78 32 0.54
79 16 0.27
80 10 0.17
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:185220915 original size:40 final size:40
Alignment explanation
Indices: 185220753--185220954 Score: 139
Period size: 40 Copynumber: 5.1 Consensus size: 40
185220743 CGAATGATGT
*
185220753 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
185220793 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
* **
185220832 TCCGGGCTAA-TCCTGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
185220870 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
185220911 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
185220951 CCGG
1 CCGG
185220955 TTAAATTCCG
Statistics
Matches: 127, Mismatches: 27, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
38 24 0.19
39 17 0.13
40 77 0.61
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:185220915 original size:78 final size:80
Alignment explanation
Indices: 185220752--185220935 Score: 196
Period size: 78 Copynumber: 2.3 Consensus size: 80
185220742 TCGAATGATG
* * *
185220752 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
185220817 GTGCGAGTTAATAAA
66 GTGCAAGTCAATAAA
* * **
185220832 TCCGGGCTAA-TCCTGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
**
185220894 CGTGCAAGTCGCTATAA
65 CGTGCAAGTCAATA-AA
**
185220911 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGC-TTTG
185220936 AGCGAGTCGT
Statistics
Matches: 86, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
77 1 0.01
78 44 0.51
79 27 0.31
80 14 0.16
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCAAGTCAATAAA
Found at i:185222391 original size:40 final size:40
Alignment explanation
Indices: 185222335--185222465 Score: 208
Period size: 40 Copynumber: 3.3 Consensus size: 40
185222325 GGGGCGTTAC
* **
185222335 ACTTAGCCCGGATATAATCACTCGCACGAATGCCTTCGGG
1 ACTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGG
* * *
185222375 TCTTAGCCCGGATATAATCATTAGTATAAATGCCTTCGGG
1 ACTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGG
185222415 ACTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGG
1 ACTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGG
185222455 ACTTAGCCCGG
1 ACTTAGCCCGG
185222466 GTATCATTCA
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
ACTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGG
Found at i:185230524 original size:39 final size:40
Alignment explanation
Indices: 185230416--185230661 Score: 295
Period size: 40 Copynumber: 6.2 Consensus size: 40
185230406 TCTTCGGAAT
* * *
185230416 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
185230455 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
*
185230495 -TAGCCCGGATATAA-CAACTCA-CACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACT-AGCACAAATGCCTTCGGGTC
* *
185230534 TTAGCCCGGATATAA-CACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
185230573 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
185230613 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
185230653 TTAGCCCGG
1 TTAGCCCGG
185230662 GTATCATTCA
Statistics
Matches: 180, Mismatches: 21, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
39 69 0.38
40 111 0.62
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:185230542 original size:79 final size:78
Alignment explanation
Indices: 185230416--185230661 Score: 266
Period size: 79 Copynumber: 3.1 Consensus size: 78
185230406 TCTTCGGAAT
* * * * * *
185230416 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAT--TAACTAGCAC
185230480 AAATGCCTTCGGGTC
64 AAATGCCTTCGGGTC
* * *
185230495 -TAGCCCGGATATAA-CAACTCA-CACGAATGCCTTCGGGTCTTAGCCCGGATATAACACTCGCA
1 TTAGCCCGGATATAATC-ACT-AGCACAAATGCCTTCGGGTCTTAGCCCGGATATTA-ACTAGCA
*
185230557 CGAATGCCTTCGGGTC
63 CAAATGCCTTCGGGTC
* * * *
185230573 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCAT
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAT--TAACTAGCAC
*
185230638 AAATGCCTTCGGGAC
64 AAATGCCTTCGGGTC
185230653 TTAGCCCGG
1 TTAGCCCGG
185230662 GTATCATTCA
Statistics
Matches: 141, Mismatches: 17, Indels: 17
0.81 0.10 0.10
Matches are distributed among these distances:
77 1 0.01
78 26 0.18
79 84 0.60
80 30 0.21
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (78 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATTAACTAGCACAA
ATGCCTTCGGGTC
Found at i:185232643 original size:19 final size:19
Alignment explanation
Indices: 185232607--185232645 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
185232597 TTTTCATCAT
* *
185232607 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
185232626 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
185232645 A
1 A
185232646 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:185233149 original size:55 final size:56
Alignment explanation
Indices: 185233084--185233198 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
185233074 AGCATGGCTG
* * *
185233084 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * * *
185233140 CCAGA-ACAGATATACGTGGCAGGGCCACTAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
185233195 CCAG
1 CCAG
185233199 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:185233194 original size:28 final size:27
Alignment explanation
Indices: 185233109--185233198 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 27
185233099 GTGACAGAGT
*
185233109 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
185233138 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
*
185233165 CACTAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
185233193 CACCAG
1 CACCAG
185233199 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 22 0.44
28 21 0.42
29 7 0.14
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:185233351 original size:28 final size:28
Alignment explanation
Indices: 185233304--185233371 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
185233294 AAATTCACCC
* **
185233304 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGAAATTTTGCATACA
185233332 TAGGGGTATAATGGAAATTTTGCATACA
1 TAGGGGTATAATGGAAATTTTGCATACA
185233360 TAGGGGTATAAT
1 TAGGGGTATAAT
185233372 AGTACATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.34, C:0.07, G:0.26, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAATGGAAATTTTGCATACA
Found at i:185237486 original size:29 final size:29
Alignment explanation
Indices: 185237453--185237613 Score: 214
Period size: 29 Copynumber: 5.6 Consensus size: 29
185237443 GTGACGAGAT
185237453 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
185237482 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
185237511 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
185237540 TGACACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
185237569 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
185237598 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
185237614 GGCTTAAATT
Statistics
Matches: 116, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 116 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:185248204 original size:29 final size:29
Alignment explanation
Indices: 185248172--185248244 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
185248162 CTTCGAGCTC
*
185248172 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
185248201 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
185248230 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
185248245 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:185254977 original size:28 final size:27
Alignment explanation
Indices: 185254929--185255034 Score: 119
Period size: 27 Copynumber: 3.9 Consensus size: 27
185254919 CTGCCAGAAT
* *
185254929 AGATAATGTGACAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
185254956 AGATAATCGTGGCAGAGCCACCAGA-AC
1 AGATAAT-GTGGCAGAGCCACCAGATAC
*
185254983 AGATATATGTGGCAAAGCCACCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
185255010 AGATAATTTGTGGC-GTAGCCACCAG
1 AGATAA--TGTGGCAG-AGCCACCAG
185255035 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
26 1 0.01
27 36 0.52
28 32 0.46
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.18
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:185255023 original size:55 final size:54
Alignment explanation
Indices: 185254922--185255034 Score: 140
Period size: 55 Copynumber: 2.1 Consensus size: 54
185254912 AGCATGGCTG
* * *
185254922 CCAGAATAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAG-AGCCA
1 CCAGAACAGATAATGTGACAAAGCCACCAGATACAGATAATCGTGGC-GTAGCCA
* *
185254976 CCAGAACAGATATATGTGGCAAAGCCACCAGAT-CAGATAATTTGTGGCGTAGCCA
1 CCAGAACAGATA-ATGTGACAAAGCCACCAGATACAGATAA-TCGTGGCGTAGCCA
185255031 CCAG
1 CCAG
185255035 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 19 0.37
55 32 0.63
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAAAGCCACCAGATACAGATAATCGTGGCGTAGCCA
Found at i:185260183 original size:27 final size:26
Alignment explanation
Indices: 185260146--185260260 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
185260136 AGCATAGCTG
* *
185260146 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
185260172 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
185260200 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
185260227 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
185260254 CCAGAAC
1 CCAGAAC
185260261 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:185260210 original size:54 final size:54
Alignment explanation
Indices: 185260146--185260260 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
185260136 AGCATAGCTG
*
185260146 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
185260200 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
185260254 CCAGAAC
1 CCAGAAC
185260261 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:185260547 original size:20 final size:20
Alignment explanation
Indices: 185260522--185260570 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
185260512 ATTAGGCCCG
185260522 TTGGCCCATGAACCCGATCT
1 TTGGCCCATGAACCCGATCT
185260542 TTGGCCCATGAACCCGATCT
1 TTGGCCCATGAACCCGATCT
185260562 TTGGCCCAT
1 TTGGCCCAT
185260571 TAAGCCCAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.18, C:0.35, G:0.20, T:0.27
Consensus pattern (20 bp):
TTGGCCCATGAACCCGATCT
Found at i:185262162 original size:29 final size:29
Alignment explanation
Indices: 185262130--185262261 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
185262120 ATAGTGAATC
185262130 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
185262159 CGCACACTTAGTGCTATATAATTTTTAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
185262189 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
185262218 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
185262247 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
185262262 GTACAATTTT
Statistics
Matches: 99, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
29 71 0.72
30 28 0.28
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:185262271 original size:59 final size:59
Alignment explanation
Indices: 185262130--185262261 Score: 239
Period size: 59 Copynumber: 2.3 Consensus size: 59
185262120 ATAGTGAATC
*
185262130 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTTAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
*
185262189 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
185262247 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
185262262 GTACAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 23 0.32
59 48 0.68
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:185265176 original size:26 final size:26
Alignment explanation
Indices: 185265140--185265223 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
185265130 CATGAAATTC
185265140 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
185265166 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
185265192 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
185265218 TTATCA
1 TTATCA
185265224 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:185266778 original size:20 final size:21
Alignment explanation
Indices: 185266736--185266779 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
185266726 AATTACAAAA
185266736 ATTTAACGATTATATTTAAAT
1 ATTTAACGATTATATTTAAAT
*
185266757 ATTTAAC-A-TATAGTTTATAT
1 ATTTAACGATTATA-TTTAAAT
185266777 ATT
1 ATT
185266780 CTGATTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 4 0.19
20 10 0.48
21 7 0.33
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.50
Consensus pattern (21 bp):
ATTTAACGATTATATTTAAAT
Found at i:185269798 original size:17 final size:17
Alignment explanation
Indices: 185269759--185269791 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
185269749 CTAAAAATGA
185269759 AAAAAAAAATTAAATTT
1 AAAAAAAAATTAAATTT
*
185269776 AAAAAAAATTTAAATT
1 AAAAAAAAATTAAATT
185269792 AATAAAAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AAAAAAAAATTAAATTT
Found at i:185269836 original size:30 final size:30
Alignment explanation
Indices: 185269800--185269863 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
185269790 TTAATAAAAG
* * *
185269800 TAAAATTATATTTTAGTCCCTTAAAGATTA
1 TAAAATTATAATTTAATCCCTTAAAAATTA
* * *
185269830 TAAAATTTTAATTTAATTCTTTAAAAATTA
1 TAAAATTATAATTTAATCCCTTAAAAATTA
185269860 TAAA
1 TAAA
185269864 GATATAGGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (30 bp):
TAAAATTATAATTTAATCCCTTAAAAATTA
Found at i:185276692 original size:27 final size:28
Alignment explanation
Indices: 185276635--185276704 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
185276625 AAATTTGTAC
**
185276635 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
185276663 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
185276690 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
185276705 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:185276713 original size:27 final size:27
Alignment explanation
Indices: 185276635--185276716 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
185276625 AAATTTGTAC
* *
185276635 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
185276663 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
185276690 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
185276717 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:185287959 original size:42 final size:42
Alignment explanation
Indices: 185287912--185288018 Score: 205
Period size: 42 Copynumber: 2.5 Consensus size: 42
185287902 TATTGGTCTC
185287912 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
185287954 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
*
185287996 GGCACTAAGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
185288019 ATTGTACAGC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.30, C:0.14, G:0.34, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:185288033 original size:30 final size:30
Alignment explanation
Indices: 185287997--185288156 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
185287987 GACAAGATTG
* * * * *
185287997 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
185288027 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
185288055 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
185288084 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
185288114 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
185288143 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
185288157 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 48 0.40
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:185288125 original size:59 final size:57
Alignment explanation
Indices: 185287997--185288156 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
185287987 GACAAGATTG
* * * * * *
185287997 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
185288055 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
185288114 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
185288157 GATTCACTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 50 0.54
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:185292292 original size:56 final size:56
Alignment explanation
Indices: 185292225--185293360 Score: 1540
Period size: 56 Copynumber: 20.3 Consensus size: 56
185292215 TACATTTTTA
**
185292225 GTTGGCATCAATATGTGA-TCTCGATATGTGTGTGTAAGTAAGACCACGTTTAATAC
1 GTTGGCATCAATATGTGATTC-CGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * *
185292281 GTTGGCATCAATATCTGATTCCCATATGTATGTGCGAGTAAGACCACGTTTAATAT
1 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
*
185292337 GTTGGCATCAATATGTGATTCCGATATGTGTGT-CGAGTAAAACCACGTTTAATAC
1 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * *
185292392 ATTGGCATCGATATGTGATTCCAATATGTGTGTGCGAGTAAGACCACGTTTAATAT
1 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* *
185292448 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCATGTTTAATAT
1 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
** * *
185292504 GTTGGCATTGATATGTGATTCCGATATGTGTGTGCGAGTAAAACCACGTTTAATAT
1 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* *
185292560 GTTGGCATCAGTATGTGATTCCGATATGTGTATGCGAGTAAGACCACGTTTAATAC
1 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * ***
185292616 GTTAGCATCGATATGTGATTCTGATATGTGTGTGTTTGTAAGACCACGTTTAATAC
1 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * *
185292672 GTTAGCATCAATATGTGATTTCGATATGTGTGTGCGAGTAAGACCAAGTTTAATAC
1 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
*** * * *
185292728 GTTGGCATTGGTATGTGATTCCAATATGTGTGTGCGAGTAAGACCACATTTAATAT
1 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * *
185292784 GTTGGCATCAATATGTGATTCCAATATGTGTGTGCGAGTACGACCACGTTTAATAT
1 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * *
185292840 GTTGGCATCAATATGTGATTCCGATATGTGTGTGTGAGTAAGACCATGTTTAATAT
1 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
** * *
185292896 GTTGGCATTGATATGTGATGCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAT
1 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
*
185292952 GTTGGCATCAATATGTGATTCCGATATGTGTGTACGAGTAAGACCACGTTTAATAC
1 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * *** * *
185293008 GTTAGCATCGATATGTGATTCTGATATGTGTGTGTTTGTAAGCCCACGTTTAATAT
1 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * *
185293064 GTTAGCATCAATATGTGATTTCGATATGTGTGTGCGAGTAAGACCATGCTTAATAC
1 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
*** * *
185293120 GTTGGCATTGGTATGTGATTCCAATATGTGTGTGCGAGTAAGACCACATTTAATAC
1 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * * * * *
185293176 GTTGGCATCGATATGTGATTCCGATATGTATTTACAAGTAAGACCACATTTAATAT
1 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * *
185293232 GTTGCCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACATTTAATAC
1 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * * *
185293288 GTTGGCATCGATATGTGATTCCGATATGTGTCTGCGAATATGACCACTTTTAATAC
1 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
185293344 GTTGGCA-CTAATATGTG
1 GTTGGCATC-AATATGTG
185293361 TGTGTGAGTA
Statistics
Matches: 956, Mismatches: 121, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
55 51 0.05
56 903 0.94
57 2 0.00
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (56 bp):
GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
Found at i:185293376 original size:43 final size:43
Alignment explanation
Indices: 185293311--185293403 Score: 116
Period size: 43 Copynumber: 2.2 Consensus size: 43
185293301 TGTGATTCCG
* *
185293311 ATATGTGTCTGCGAATATGACCACTTTTAATACGTTGGCA-CTA
1 ATATGTGTCTGCGAATAAGACCACATTTAATACGTTGGCATC-A
* * * *
185293354 ATATGTGTGTGTGAGTAAGACCACATTTAATATGTTGGCATCA
1 ATATGTGTCTGCGAATAAGACCACATTTAATACGTTGGCATCA
185293397 ATATGTG
1 ATATGTG
185293404 ATTCCGATAT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 42 0.98
44 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (43 bp):
ATATGTGTCTGCGAATAAGACCACATTTAATACGTTGGCATCA
Found at i:185293471 original size:99 final size:99
Alignment explanation
Indices: 185293255--185293476 Score: 224
Period size: 99 Copynumber: 2.2 Consensus size: 99
185293245 TGTGATTCCG
* *
185293255 ATATGTGTGTG-CGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCCGATATGTGT
1 ATATGTATGTGAC-AGTAAGACCACATTTAATACGTTGGCATCAATATGTGATTCCGATATGTGT
* * * *
185293319 CTGCGAATATGACCACTTTTAATACGTTGGCACTA
65 CTACGAATAAGACCACTTTGAACACGTTGGCACTA
* ** * *
185293354 ATATGTGTGTGTGAGTAAGACCACATTTAATATGTTGGCATCAATATGTGATTCCGATATGTGTT
1 ATATGTATGTGACAGTAAGACCACATTTAATACGTTGGCATCAATATGTGATTCCGATATGTGTC
*
185293419 TAC-AAGTAAGACC-CTATCTGGAACA-G-TGGCATTA
66 TACGAA-TAAGACCACT-T-T-GAACACGTTGGCACTA
185293453 ATATGTAAT-T-ACATGTAAGACCAC
1 ATATGT-ATGTGACA-GTAAGACCAC
185293477 GTTTGGGACG
Statistics
Matches: 104, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
98 5 0.05
99 93 0.89
100 3 0.03
101 3 0.03
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (99 bp):
ATATGTATGTGACAGTAAGACCACATTTAATACGTTGGCATCAATATGTGATTCCGATATGTGTC
TACGAATAAGACCACTTTGAACACGTTGGCACTA
Found at i:185298071 original size:17 final size:19
Alignment explanation
Indices: 185298039--185298073 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
185298029 GGGGCTATTT
185298039 TGGGCCTCGATGGGCCTGA
1 TGGGCCTCGATGGGCCTGA
185298058 TGGGCC-CG-TGGGCCTG
1 TGGGCCTCGATGGGCCTG
185298074 CTTGTGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 2 0.12
19 6 0.38
ACGTcount: A:0.06, C:0.29, G:0.46, T:0.20
Consensus pattern (19 bp):
TGGGCCTCGATGGGCCTGA
Found at i:185298755 original size:22 final size:22
Alignment explanation
Indices: 185298725--185298772 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
185298715 TACGGCCTCT
185298725 AGCCATCCTGTCTATGGTGTTA
1 AGCCATCCTGTCTATGGTGTTA
* *
185298747 AGCCCTCCTGTCTATGGTGTTG
1 AGCCATCCTGTCTATGGTGTTA
185298769 AGCC
1 AGCC
185298773 GTCTTGTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.15, C:0.27, G:0.25, T:0.33
Consensus pattern (22 bp):
AGCCATCCTGTCTATGGTGTTA
Found at i:185302194 original size:22 final size:22
Alignment explanation
Indices: 185302166--185302212 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
185302156 TTAGCAATCT
185302166 TGTCTACAACATTGAGCCGTCC
1 TGTCTACAACATTGAGCCGTCC
* *
185302188 TGTCTACGACGTTGAGCCGTCC
1 TGTCTACAACATTGAGCCGTCC
185302210 TGT
1 TGT
185302213 TGACTTAGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.17, C:0.30, G:0.23, T:0.30
Consensus pattern (22 bp):
TGTCTACAACATTGAGCCGTCC
Found at i:185305369 original size:56 final size:56
Alignment explanation
Indices: 185305281--185305846 Score: 583
Period size: 56 Copynumber: 9.8 Consensus size: 56
185305271 AAATTTTTGA
** * * *
185305281 GTTGGCATCGATATGTGATTTTGATATATGTGTGCGAGTAAGACAACTTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
*
185305337 GTTGGCATCGATATGTGATTCCGAGATGTGTGTGCGAGTAAGACCACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * *
185305393 GTTGGAATCGATATGTGATTCCGATATGTGTGTGTGAGTAAAACCACGTTTAATAT
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * * *
185305449 GTTGGCATCGACATGTGATTTCGATATATGTGTGTGAGTAAGACGACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* ** * * * * ** **
185305505 GTTGGCATCAATAATACGTTTGCATCGATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACG
1 GTTGGCATCGAT-ATGTGATT-C--CGATATGTG----TG---TGCGAGT--AAG-ACCA-C-GT
185305570 TTTAATAC
50 TT-AATAC
* * * **
185305578 ATTGGCATCGATATGTTATTCCGATATGTGTGTGCGAGTAAGACCATGTTTAGCAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * *
185305634 ATTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGAACACATTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * * * *
185305690 ATTGGCATTGATATATGATTTCGATATATGTGTGCGAGTAAGACCATGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
*
185305746 GTTGGCATCGATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * *
185305802 GTTGGCATCGATATGTGATTCCAATATGTGTTTACGAGTAAGACC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACC
185305847 TTGTCTGGGA
Statistics
Matches: 423, Mismatches: 70, Indels: 34
0.80 0.13 0.06
Matches are distributed among these distances:
56 352 0.83
57 7 0.02
59 2 0.00
60 10 0.02
62 5 0.01
64 2 0.00
65 2 0.00
67 6 0.01
69 11 0.03
70 3 0.01
71 2 0.00
72 6 0.01
73 15 0.04
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (56 bp):
GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
Found at i:185305481 original size:112 final size:112
Alignment explanation
Indices: 185305281--185305846 Score: 673
Period size: 112 Copynumber: 4.9 Consensus size: 112
185305271 AAATTTTTGA
* * * *
185305281 GTTGGCATCGATATGTGATTTTGATATATGTGTGCGAGTAAGACAACTTTTAATACGTTGGCATC
1 GTTGGCATCGATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATC
*
185305346 GATATGTGATTCCGAGATGTGTGTGCGAGTAAGACCACGTTTAATAC
66 GATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * * *
185305393 GTTGGAATCGATATGTGATTCCGATATGTGTGTGTGAGTAAAACCACGTTTAATATGTTGGCATC
1 GTTGGCATCGATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATC
* * * * *
185305458 GACATGTGATTTCGATATATGTGTGTGAGTAAGACGACGTTTAATAC
66 GATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
*
185305505 GTTGGCATCAATAATACGTTTGCATCGATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACG
1 GTTGG---C----AT-CG-AT--AT-G-T----GATTCTGATATGTGTGTGCGAGTAAGACCACG
* * * **
185305570 TTTAATACATTGGCATCGATATGTTATTCCGATATGTGTGTGCGAGTAAGACCATGTTTAGCAC
49 TTTAATACGTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * * * *
185305634 ATTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGAACACATTTAATACATTGGCATT
1 GTTGGCATCGATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATC
* * * *
185305699 GATATATGATTTCGATATATGTGTGCGAGTAAGACCATGTTTAATAC
66 GATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
185305746 GTTGGCATCGATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATC
1 GTTGGCATCGATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATC
* * *
185305811 GATATGTGATTCCAATATGTGTTTACGAGTAAGACC
66 GATATGTGATTCCGATATGTGTGTGCGAGTAAGACC
185305847 TTGTCTGGGA
Statistics
Matches: 382, Mismatches: 55, Indels: 34
0.81 0.12 0.07
Matches are distributed among these distances:
112 277 0.73
116 1 0.00
117 1 0.00
118 2 0.01
119 2 0.01
120 3 0.01
121 3 0.01
122 2 0.01
123 2 0.01
124 1 0.00
125 1 0.00
126 1 0.00
129 86 0.23
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (112 bp):
GTTGGCATCGATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATC
GATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
Found at i:185305530 original size:73 final size:73
Alignment explanation
Indices: 185305443--185305586 Score: 209
Period size: 73 Copynumber: 2.0 Consensus size: 73
185305433 AAACCACGTT
* * * *
185305443 TAATATGTTGGCATCGACATGTGATT-TCGATATATGTGTGTGAGTAAGACGACGTTTAATACGT
1 TAATACGTTGGCATCGACATGTGATTCT-GATATATGTGTGCGAGTAAGACCACGTTTAATACAT
185305507 TGGCATCAA
65 TGGCATCAA
* * *
185305516 TAATACGTTTGCATCGATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACGTTTAATACATT
1 TAATACGTTGGCATCGACATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACATT
185305581 GGCATC
66 GGCATC
185305587 GATATGTTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
73 62 0.98
74 1 0.02
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.35
Consensus pattern (73 bp):
TAATACGTTGGCATCGACATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACATT
GGCATCAA
Found at i:185305538 original size:129 final size:129
Alignment explanation
Indices: 185305387--185305621 Score: 362
Period size: 129 Copynumber: 1.8 Consensus size: 129
185305377 AGACCACGTT
* **
185305387 TAATACGTTGGAATCGATATGTGATTCCGATATGTGTGTGTGAGTAAAACCACGTTTAATATGTT
1 TAATACGTTGGAATCGATATGTGATTCCGATATGTGTGTGCGAGTAAAACCACGTTTAATACATT
* *
185305452 GGCATCGACATGTGATTTCGATATATGTGTGTGAGTAAGACGACGTTTAATACGTTGGCATCAA
66 GGCATCGACATGTGATTCCGATATATGTGTGCGAGTAAGACGACGTTTAATACGTTGGCATCAA
* * * *
185305516 TAATACGTTTGCATCGATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACGTTTAATACATT
1 TAATACGTTGGAATCGATATGTGATTCCGATATGTGTGTGCGAGTAAAACCACGTTTAATACATT
* * *
185305581 GGCATCGATATGTTATTCCGATATGTGTGTGCGAGTAAGAC
66 GGCATCGACATGTGATTCCGATATATGTGTGCGAGTAAGAC
185305622 CATGTTTAGC
Statistics
Matches: 94, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
129 94 1.00
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (129 bp):
TAATACGTTGGAATCGATATGTGATTCCGATATGTGTGTGCGAGTAAAACCACGTTTAATACATT
GGCATCGACATGTGATTCCGATATATGTGTGCGAGTAAGACGACGTTTAATACGTTGGCATCAA
Found at i:185305643 original size:185 final size:181
Alignment explanation
Indices: 185305330--185305844 Score: 644
Period size: 185 Copynumber: 2.9 Consensus size: 181
185305320 AAGACAACTT
* *
185305330 TTAATACGTTGGCATCGATATGTGATTCCGAGATGTGTGTGCGAGTAAGACCACGTTTAATACGT
1 TTAATACGTTTGCATCGATATGTGATT-CGATATGTGTGTGCGAGTAAGACCACGTTTAATACGT
* * * *
185305395 TGGAATCGATATGTGATTCCGATATGTGTGTGTGAGTAAAACCACGTTTAATATGTTGGCATCGA
65 TGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGA
* * * * *
185305460 CATGTGATTTCGATATATGTGTGTGAGTAAG-ACGACGTTTAATACGTTGGCA
130 TATGTGATTCCGATATATGTGTGCGAGTAAGAAC-ACATTTAATACATTGGCA
185305512 TCAATAATACGTTTGCATCGATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACGTTTAATA
1 T---TAATACGTTTGCATCGATATGTGATTC-GATATGTGTGTGCGAGTAAGACCACGTTTAATA
* * * ** *
185305577 CATTGGCATCGATATGTTATTCCGATATGTGTGTGCGAGTAAGACCATGTTTAGCACATTGGCAT
62 CGTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCAT
*
185305642 CGATATGTGATTCCGATATGTGTGTGCGAGTAAGAACACATTTAATACATTGGCA
127 CGATATGTGATTCCGATATATGTGTGCGAGTAAGAACACATTTAATACATTGGCA
* * *
185305697 TTGATA----T--AT-G--A--T--TTCGATATATGTGTGCGAGTAAGACCATGTTTAATACGTT
1 TTAATACGTTTGCATCGATATGTGATTCGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTT
*
185305749 GGCATCGATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGAT
66 GGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGAT
* * * *
185305814 ATGTGATTCCAATATGTGTTTACGAGTAAGA
131 ATGTGATTCCGATATATGTGTGCGAGTAAGA
185305845 CCTTGTCTGG
Statistics
Matches: 297, Mismatches: 31, Indels: 24
0.84 0.09 0.07
Matches are distributed among these distances:
168 121 0.41
169 3 0.01
171 1 0.00
173 1 0.00
175 1 0.00
176 2 0.01
178 1 0.00
182 5 0.02
184 1 0.00
185 159 0.54
186 2 0.01
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.34
Consensus pattern (181 bp):
TTAATACGTTTGCATCGATATGTGATTCGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTT
GGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGAT
ATGTGATTCCGATATATGTGTGCGAGTAAGAACACATTTAATACATTGGCA
Found at i:185307104 original size:50 final size:50
Alignment explanation
Indices: 185307037--185307140 Score: 190
Period size: 50 Copynumber: 2.1 Consensus size: 50
185307027 ATATGAATTA
185307037 TGTTAGTAAATTAATCATGATTCGACACTTATATATATAAACATATGATG
1 TGTTAGTAAATTAATCATGATTCGACACTTATATATATAAACATATGATG
* *
185307087 TGTTAGTAAATTAATCATGATTCGGCACTTATTTATATAAACATATGATG
1 TGTTAGTAAATTAATCATGATTCGACACTTATATATATAAACATATGATG
185307137 TGTT
1 TGTT
185307141 GGTTTGATAT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.40
Consensus pattern (50 bp):
TGTTAGTAAATTAATCATGATTCGACACTTATATATATAAACATATGATG
Found at i:185308242 original size:72 final size:72
Alignment explanation
Indices: 185308125--185308270 Score: 292
Period size: 72 Copynumber: 2.0 Consensus size: 72
185308115 CGATTCACAG
185308125 AAATAATGTATTGATATATCATTTCCAAAACCACTTGTACTTAACTATTCGTTTAATTAGCTAAA
1 AAATAATGTATTGATATATCATTTCCAAAACCACTTGTACTTAACTATTCGTTTAATTAGCTAAA
185308190 ATTATCA
66 ATTATCA
185308197 AAATAATGTATTGATATATCATTTCCAAAACCACTTGTACTTAACTATTCGTTTAATTAGCTAAA
1 AAATAATGTATTGATATATCATTTCCAAAACCACTTGTACTTAACTATTCGTTTAATTAGCTAAA
185308262 ATTATCA
66 ATTATCA
185308269 AA
1 AA
185308271 TCAAAATTCA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 74 1.00
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (72 bp):
AAATAATGTATTGATATATCATTTCCAAAACCACTTGTACTTAACTATTCGTTTAATTAGCTAAA
ATTATCA
Found at i:185308385 original size:40 final size:40
Alignment explanation
Indices: 185308338--185308628 Score: 330
Period size: 40 Copynumber: 7.3 Consensus size: 40
185308328 AGGGGCATGA
*
185308338 AAGTGCAACCAAGGGTACCGAAGTACAAATAGGGGCACAT
1 AAGTGCAATCAAGGGTACCGAAGTACAAATAGGGGCACAT
* * * * * *
185308378 AATTGCAATAAAGAGTATCGAAGTACAAACAGGGGCACGT
1 AAGTGCAATCAAGGGTACCGAAGTACAAATAGGGGCACAT
* *
185308418 AAGTGCAATCAAGGGTATCGAAGAACAAATAGGGGCACAT
1 AAGTGCAATCAAGGGTACCGAAGTACAAATAGGGGCACAT
* * * *
185308458 AAGTGCAATCAGGGGTACCAAAGTACAAATCGGGGCACGT
1 AAGTGCAATCAAGGGTACCGAAGTACAAATAGGGGCACAT
* * * * * *
185308498 AAATGCAATCAAAGGTACTGAAGTACAAACAAGGGCACGT
1 AAGTGCAATCAAGGGTACCGAAGTACAAATAGGGGCACAT
* * * *
185308538 AAGTGCAATCAGGGGTACCAAAGTACAAACAGGGGCTCAT
1 AAGTGCAATCAAGGGTACCGAAGTACAAATAGGGGCACAT
* * * *
185308578 AGGTGCAATCAGGGGTACCGAAGTACCAATAGGCGCACAT
1 AAGTGCAATCAAGGGTACCGAAGTACAAATAGGGGCACAT
*
185308618 AAGTGAAATCA
1 AAGTGCAATCA
185308629 TTCAATAATT
Statistics
Matches: 208, Mismatches: 43, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 208 1.00
ACGTcount: A:0.40, C:0.18, G:0.27, T:0.15
Consensus pattern (40 bp):
AAGTGCAATCAAGGGTACCGAAGTACAAATAGGGGCACAT
Found at i:185308465 original size:80 final size:80
Alignment explanation
Indices: 185308327--185308628 Score: 372
Period size: 80 Copynumber: 3.8 Consensus size: 80
185308317 AGAGTATAAC
* * * * * * *
185308327 CAGGGGCATGAAAGTGCAACCAAGGGTACCGAAGTACAAATAGGGGCACATAATTGCAATAAAGA
1 CAGGGGCACGTAAGTGCAATCAAGGGTACCGAAGTACAAATAGGGGCACATAAGTGCAATCAGGG
* *
185308392 GTATCGAAGTACAAA
66 GTACCAAAGTACAAA
* *
185308407 CAGGGGCACGTAAGTGCAATCAAGGGTATCGAAGAACAAATAGGGGCACATAAGTGCAATCAGGG
1 CAGGGGCACGTAAGTGCAATCAAGGGTACCGAAGTACAAATAGGGGCACATAAGTGCAATCAGGG
185308472 GTACCAAAGTACAAA
66 GTACCAAAGTACAAA
* * * * * *
185308487 TC-GGGGCACGTAAATGCAATCAAAGGTACTGAAGTACAAACAAGGGCACGTAAGTGCAATCAGG
1 -CAGGGGCACGTAAGTGCAATCAAGGGTACCGAAGTACAAATAGGGGCACATAAGTGCAATCAGG
185308551 GGTACCAAAGTACAAA
65 GGTACCAAAGTACAAA
* * * * * * *
185308567 CAGGGGCTCATAGGTGCAATCAGGGGTACCGAAGTACCAATAGGCGCACATAAGTGAAATCA
1 CAGGGGCACGTAAGTGCAATCAAGGGTACCGAAGTACAAATAGGGGCACATAAGTGCAATCA
185308629 TTCAATAATT
Statistics
Matches: 188, Mismatches: 32, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
79 1 0.01
80 186 0.99
81 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.27, T:0.15
Consensus pattern (80 bp):
CAGGGGCACGTAAGTGCAATCAAGGGTACCGAAGTACAAATAGGGGCACATAAGTGCAATCAGGG
GTACCAAAGTACAAA
Found at i:185308481 original size:20 final size:20
Alignment explanation
Indices: 185308458--185308601 Score: 71
Period size: 20 Copynumber: 7.2 Consensus size: 20
185308448 AGGGGCACAT
185308458 AAGTGCAATCAGGGGTACCA
1 AAGTGCAATCAGGGGTACCA
* * *
185308478 AAGTACAAATC-GGGGCACGTA
1 AAGTGC-AATCAGGGGTAC-CA
** **
185308499 AA-TGCAATCAAAGGTACTG
1 AAGTGCAATCAGGGGTACCA
* * * * **
185308518 AAGTACAAACAAGGGCACGT
1 AAGTGCAATCAGGGGTACCA
185308538 AAGTGCAATCAGGGGTACCA
1 AAGTGCAATCAGGGGTACCA
* *
185308558 AAGTACAAACAGGGG--CTCA
1 AAGTGCAATCAGGGGTAC-CA
* *
185308577 TAGGTGCAATCAGGGGTACCG
1 -AAGTGCAATCAGGGGTACCA
185308598 AAGT
1 AAGT
185308602 ACCAATAGGC
Statistics
Matches: 89, Mismatches: 27, Indels: 16
0.67 0.20 0.12
Matches are distributed among these distances:
18 1 0.01
19 9 0.10
20 70 0.79
21 8 0.09
22 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.28, T:0.15
Consensus pattern (20 bp):
AAGTGCAATCAGGGGTACCA
Found at i:185308628 original size:120 final size:121
Alignment explanation
Indices: 185308338--185308628 Score: 390
Period size: 120 Copynumber: 2.4 Consensus size: 121
185308328 AGGGGCATGA
* * *
185308338 AAGTGCAACCAAGGGTACCGAAGTACAAATAGGGGCACATAATTGCAAT-AAAGAGTATCGAAGT
1 AAGTGCAATCAGGGGTACCGAAGTACAAATAGGGGCACATAAATGCAATCAAAGAGTATCGAAGT
* * * *
185308402 ACAAACAGGGGCACGTAAGTGCAATCAAGGGTATCGAAGAACAAATAGGGGCACAT
66 ACAAACAAGGGCACGTAAGTGCAATCAAGGGTACCAAAGAACAAACAGGGGCACAT
* * *
185308458 AAGTGCAATCAGGGGTACCAAAGTACAAATCGGGGCACGTAAATGCAATCAAAG-GTA-CTGAAG
1 AAGTGCAATCAGGGGTACCGAAGTACAAATAGGGGCACATAAATGCAATCAAAGAGTATC-GAAG
* * *
185308521 TACAAACAAGGGCACGTAAGTGCAATCAGGGGTACCAAAGTACAAACAGGGGCTCAT
65 TACAAACAAGGGCACGTAAGTGCAATCAAGGGTACCAAAGAACAAACAGGGGCACAT
* * * * *
185308578 AGGTGCAATCAGGGGTACCGAAGTACCAATAGGCGCACATAAGTGAAATCA
1 AAGTGCAATCAGGGGTACCGAAGTACAAATAGGGGCACATAAATGCAATCA
185308629 TTCAATAATT
Statistics
Matches: 148, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
119 1 0.01
120 143 0.97
121 4 0.03
ACGTcount: A:0.40, C:0.18, G:0.27, T:0.15
Consensus pattern (121 bp):
AAGTGCAATCAGGGGTACCGAAGTACAAATAGGGGCACATAAATGCAATCAAAGAGTATCGAAGT
ACAAACAAGGGCACGTAAGTGCAATCAAGGGTACCAAAGAACAAACAGGGGCACAT
Found at i:185311142 original size:20 final size:20
Alignment explanation
Indices: 185311093--185311142 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
185311083 ATGACTTATG
*
185311093 CACATAT-AA-ATATATGTA
1 CACATATCAATATATATATA
*
185311111 CTCAT-TCAAATATATATATA
1 CACATATC-AATATATATATA
185311131 CACATATCAATA
1 CACATATCAATA
185311143 CACAAATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
17 1 0.04
18 4 0.16
19 2 0.08
20 16 0.64
21 2 0.08
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.34
Consensus pattern (20 bp):
CACATATCAATATATATATA
Found at i:185314257 original size:30 final size:29
Alignment explanation
Indices: 185314210--185314268 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
185314200 TTCCCGAGCC
185314210 TAGGGGAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAGTGTAATTATGCAAAAGTT
* *
185314239 TAGGGGCAAAA-TGGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAGT-GTAATTATGCAAAAGTT
185314269 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.29
Consensus pattern (29 bp):
TAGGGGAAAAGTGTAATTATGCAAAAGTT
Found at i:185314982 original size:49 final size:50
Alignment explanation
Indices: 185314918--185315161 Score: 267
Period size: 49 Copynumber: 4.9 Consensus size: 50
185314908 TATTGTGAGG
* * *
185314918 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT-GG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGA
* * * * * *
185314967 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTTAGA
* * * *
185315018 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGA
* * * * * *
185315068 TCACGTGTCTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT-GG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGA
* * *
185315117 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
185315162 CTTCAGCTAC
Statistics
Matches: 161, Mismatches: 32, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
49 76 0.47
50 48 0.30
51 37 0.23
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGA
Found at i:185318161 original size:22 final size:22
Alignment explanation
Indices: 185318133--185318177 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
185318123 GGTTCCCACA
185318133 TCAACTTTTTGTTTCTCCTTTC
1 TCAACTTTTTGTTTCTCCTTTC
185318155 TCAACTTTTTGTTTCTCCTTTC
1 TCAACTTTTTGTTTCTCCTTTC
185318177 T
1 T
185318178 AAGCTCTTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.09, C:0.27, G:0.04, T:0.60
Consensus pattern (22 bp):
TCAACTTTTTGTTTCTCCTTTC
Found at i:185320509 original size:40 final size:40
Alignment explanation
Indices: 185320464--185320631 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
185320454 CGGAATACAA
185320464 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
185320504 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
185320544 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
185320584 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
185320624 CCGGATAT
1 CCGGATAT
185320632 CATTCAATTT
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:185320614 original size:80 final size:80
Alignment explanation
Indices: 185320480--185320629 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
185320470 ATAACCACGT
* *
185320480 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
185320545 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
185320560 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
185320623 CCCGGAT
64 CCCGGAT
185320630 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:185328746 original size:40 final size:40
Alignment explanation
Indices: 185328691--185328854 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
185328681 TGAATGATAC
* * *
185328691 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
185328731 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * * * *
185328771 CCTGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
185328811 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
185328851 CCGG
1 CCGG
185328855 TTAAATCCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:185328848 original size:80 final size:79
Alignment explanation
Indices: 185328697--185328868 Score: 204
Period size: 80 Copynumber: 2.2 Consensus size: 79
185328687 ATACCCGGGC
* * * * *
185328697 TAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
*
185328762 TTGTTATATCCTGGT
66 TGGTTATATCC-GGT
* * * **
185328777 TAAGACCCGAAGGCAATTGTGCAAGTTACTAAATCCGGGTTAAGACCCGAAGGCAATT-GTGCTT
1 TAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGA
185328841 GTGGTTATATCCGGT
65 GTGGTTATATCCGGT
185328856 TAA-ATCCCGAAGG
1 TAAGA-CCCGAAGG
185328869 TACGTGACTC
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
79 14 0.18
80 61 0.77
81 3 0.04
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
TAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
TGGTTATATCCGGT
Found at i:185332173 original size:40 final size:40
Alignment explanation
Indices: 185332129--185332308 Score: 231
Period size: 40 Copynumber: 4.5 Consensus size: 40
185332119 GCTCGATTGT
* * *
185332129 CTTCGGGACA-TAGCCCGG-TTATAGTAATTAGCGCAAATGC
1 CTTCGGGA-ATTAACCCGGATT-TAGTAACTAGCACAAATGC
* * * *
185332169 CTTCGGGACTTAACCCAGATTTGGTAACTCA-CACAATTGC
1 CTTCGGGAATTAACCCGGATTTAGTAACT-AGCACAAATGC
*
185332209 CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGAATTAACCCGGATTTAGTAACTAGCACAAATGC
*
185332249 CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGAATTAACCCGGATTTAGTAACTAGCACAAATGC
185332289 CTTCGGGAATTAACCCGGAT
1 CTTCGGGAATTAACCCGGAT
185332309 ATCATTCGAA
Statistics
Matches: 124, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
40 121 0.98
41 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (40 bp):
CTTCGGGAATTAACCCGGATTTAGTAACTAGCACAAATGC
Found at i:185334337 original size:43 final size:43
Alignment explanation
Indices: 185334279--185334370 Score: 114
Period size: 43 Copynumber: 2.1 Consensus size: 43
185334269 AGGATTATCA
*
185334279 TTATGTGATTACGTGTAAGACTAT-GTCTGGGACATTGGCATCG
1 TTATGTGATTACGTGTAAGACCATAG-CTGGGACATTGGCATCG
* * **
185334322 TTATTTGATTTCGTGTAAGACCATAGCTGGGTTATTGGCATCG
1 TTATGTGATTACGTGTAAGACCATAGCTGGGACATTGGCATCG
185334365 TATATG
1 T-TATG
185334371 AAATAGCATG
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
43 37 0.90
44 4 0.10
ACGTcount: A:0.23, C:0.13, G:0.26, T:0.38
Consensus pattern (43 bp):
TTATGTGATTACGTGTAAGACCATAGCTGGGACATTGGCATCG
Found at i:185338231 original size:43 final size:43
Alignment explanation
Indices: 185338117--185338236 Score: 177
Period size: 43 Copynumber: 2.8 Consensus size: 43
185338107 ATAACCATGA
* * *
185338117 CAATGTCCCAGACATGGTCTTACACGTAATCGCAATACAATGC
1 CAATGTCCCAGACATGGTCTTACATGTAATCACAATACAATAC
* *
185338160 TAATGTCCCAGACATGGTCTTACATGTAACCACAATACAATAC
1 CAATGTCCCAGACATGGTCTTACATGTAATCACAATACAATAC
* *
185338203 CAATGTTCCAGACATGGTCTTACGTGTAATCACA
1 CAATGTCCCAGACATGGTCTTACATGTAATCACA
185338237 TCTCGATAAC
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (43 bp):
CAATGTCCCAGACATGGTCTTACATGTAATCACAATACAATAC
Found at i:185346698 original size:40 final size:40
Alignment explanation
Indices: 185346615--185346700 Score: 138
Period size: 40 Copynumber: 2.1 Consensus size: 40
185346605 TAGCGGCTAC
*
185346615 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCGTTAT
*
185346655 ATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTCGTTAT
185346695 ATCCGG
1 ATCCGG
185346701 TTGTATTCCG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
39 1 0.02
40 42 0.98
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCGTTAT
Found at i:185354072 original size:40 final size:40
Alignment explanation
Indices: 185353989--185354155 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
185353979 AATTGAATGA
* * * ** *
185353989 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGACT
* * *
185354029 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
* *
185354069 ATATCCGGGCT-AGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGACT
* * *
185354108 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGACT
185354148 ATATCCGG
1 ATATCCGG
185354156 TTATATTCCG
Statistics
Matches: 104, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
38 3 0.03
39 31 0.30
40 68 0.65
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
Found at i:185361821 original size:40 final size:40
Alignment explanation
Indices: 185361777--185361885 Score: 139
Period size: 40 Copynumber: 2.8 Consensus size: 40
185361767 TTCACAATTT
* *
185361777 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
185361817 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
185361857 GCATAAATGTCTTC-GGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
185361886 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
39 13 0.22
40 46 0.78
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:185375315 original size:24 final size:24
Alignment explanation
Indices: 185375262--185375324 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
185375252 CAACCGAATG
* * **
185375262 TTGCACACATAGTG-CTTATTATG
1 TTGCACACATAGTGCCATAGTAAA
185375285 TTCGCACACATAGTGCCATAGTAAA
1 TT-GCACACATAGTGCCATAGTAAA
185375310 TTGCACACATAGTGC
1 TTGCACACATAGTGC
185375325 ATTTGAGATT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
23 2 0.06
24 25 0.74
25 7 0.21
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (24 bp):
TTGCACACATAGTGCCATAGTAAA
Found at i:185379997 original size:28 final size:28
Alignment explanation
Indices: 185379936--185380033 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
185379926 TCACAAATTG
** * *
185379936 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
185379965 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
185379993 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
185380021 GCACTAAGTGTGC
1 GCACTAAGTGTGC
185380034 GGGCTTATGG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:185384385 original size:40 final size:40
Alignment explanation
Indices: 185384330--185384539 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
185384320 GAACATTGAA
185384330 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
185384370 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
185384410 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
185384450 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
185384489 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
185384530 CTATATCCGG
1 ATATATCCGG
185384540 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:185399259 original size:40 final size:40
Alignment explanation
Indices: 185399222--185399407 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
185399212 GCTACTCGTT
*
185399222 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
185399262 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
185399302 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
185399342 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
185399383 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
185399408 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.89
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:185404759 original size:23 final size:24
Alignment explanation
Indices: 185404715--185404763 Score: 73
Period size: 23 Copynumber: 2.0 Consensus size: 24
185404705 CCATCTTTAA
185404715 TTATGCTTAGTTTTTAGCTGTTTCC
1 TTATGCTTAG-TTTTAGCTGTTTCC
*
185404740 TTATGCTTAG-TTTAGTTGTTTCC
1 TTATGCTTAGTTTTAGCTGTTTCC
185404763 T
1 T
185404764 CCATTTTTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 13 0.57
25 10 0.43
ACGTcount: A:0.12, C:0.14, G:0.16, T:0.57
Consensus pattern (24 bp):
TTATGCTTAGTTTTAGCTGTTTCC
Found at i:185408079 original size:28 final size:29
Alignment explanation
Indices: 185408039--185408137 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
185408029 GTAATAAGCC
*
185408039 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
185408067 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
185408095 TGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
185408124 CGCACACTTAGTGC
1 CGCACACTTAGTGC
185408138 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.61
29 18 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:185415771 original size:28 final size:29
Alignment explanation
Indices: 185415731--185415829 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
185415721 GTAATAAGCC
*
185415731 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
185415759 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
185415787 TGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
185415816 CGCACACTTAGTGC
1 CGCACACTTAGTGC
185415830 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.61
29 18 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:185431959 original size:49 final size:49
Alignment explanation
Indices: 185431899--185432104 Score: 313
Period size: 49 Copynumber: 4.4 Consensus size: 49
185431889 TACATATGTG
* * * *
185431899 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
185431948 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAA--G--TG--TA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
185431991 --TG-TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
185432037 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
185432086 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
185432105 TAATGTAAAA
Statistics
Matches: 144, Mismatches: 4, Indels: 18
0.87 0.02 0.11
Matches are distributed among these distances:
40 33 0.23
41 2 0.01
42 1 0.01
43 2 0.01
44 2 0.01
45 2 0.01
46 2 0.01
47 1 0.01
48 2 0.01
49 97 0.67
ACGTcount: A:0.29, C:0.10, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:185431997 original size:40 final size:40
Alignment explanation
Indices: 185431953--185432083 Score: 181
Period size: 40 Copynumber: 3.0 Consensus size: 40
185431943 GTATATGTGA
185431953 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
1 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
185431993 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTG
1 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAA--G--TG--TA--TG
185432041 ATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
1 -TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
185432082 TA
1 TA
185432084 TATGTGATAA
Statistics
Matches: 82, Mismatches: 0, Indels: 18
0.82 0.00 0.18
Matches are distributed among these distances:
40 35 0.43
41 2 0.02
42 1 0.01
43 2 0.02
44 2 0.02
45 2 0.02
46 2 0.02
47 1 0.01
48 2 0.02
49 33 0.40
ACGTcount: A:0.28, C:0.09, G:0.34, T:0.29
Consensus pattern (40 bp):
TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
Found at i:185432019 original size:89 final size:89
Alignment explanation
Indices: 185431904--185432083 Score: 324
Period size: 89 Copynumber: 2.0 Consensus size: 89
185431894 ATGTGTGTGA
185431904 TAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
185431969 ATGTGGTGAATGTGAAAGTGTATG
66 ATGTGGTGAATGTGAAAGTGTATG
* * * *
185431993 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
185432058 ATGTGGTGAATGTGAAAGTGTATG
66 ATGTGGTGAATGTGAAAGTGTATG
185432082 TA
1 TA
185432084 TATGTGATAA
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 87 1.00
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.28
Consensus pattern (89 bp):
TAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
ATGTGGTGAATGTGAAAGTGTATG
Found at i:185432254 original size:37 final size:37
Alignment explanation
Indices: 185432204--185432288 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
185432194 GGAATATGTT
*
185432204 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
185432241 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
185432278 CCGGGTAAGAC
1 CCGGGTAAGAC
185432289 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:185434160 original size:40 final size:40
Alignment explanation
Indices: 185434105--185434348 Score: 337
Period size: 40 Copynumber: 6.1 Consensus size: 40
185434095 GAGAATTGAG
*
185434105 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
*
185434145 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
*
185434185 AGTGATATATCC-GACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
* * * *
185434224 AGTGATGTATCCGGGCAAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
* * * * *
185434264 AGTGATGTATCCGGGCAAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
* * * *
185434304 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
185434344 AGTGA
1 AGTGA
185434349 CGTGTATTCG
Statistics
Matches: 192, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 38 0.20
40 154 0.80
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
Found at i:185434316 original size:119 final size:120
Alignment explanation
Indices: 185434105--185434348 Score: 337
Period size: 119 Copynumber: 2.0 Consensus size: 120
185434095 GAGAATTGAG
* * * * *
185434105 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCTAGTGATATATCCGGACTAAGTTCCG
1 AGTGATATATCCGGACAAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGACAAAGTCCCA
* *
185434170 AAGAGCATTCATGCTAGTGATATATCC-GACTAAGTTCCGAAGAGCATTCATGCT
66 AAGAGCATTCATGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCAATCATGCT
* * * * *
185434224 AGTGATGTATCCGGGCAAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCAAAGTCCCA
1 AGTGATATATCCGGACAAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGACAAAGTCCCA
* * * *
185434289 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
66 AAGAGCATTCATGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCAATCATGCT
185434344 AGTGA
1 AGTGA
185434349 CGTGTATTCG
Statistics
Matches: 108, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
119 80 0.74
120 28 0.26
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (120 bp):
AGTGATATATCCGGACAAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGACAAAGTCCCA
AAGAGCATTCATGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCAATCATGCT
Found at i:185434564 original size:29 final size:29
Alignment explanation
Indices: 185434522--185434685 Score: 292
Period size: 29 Copynumber: 5.7 Consensus size: 29
185434512 CGAATGAATA
185434522 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
185434551 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
185434580 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
185434609 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
* *
185434638 GAGGCACTACGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
185434667 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
185434686 TTTTTCAACA
Statistics
Matches: 131, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 131 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:185437334 original size:49 final size:49
Alignment explanation
Indices: 185437274--185437484 Score: 298
Period size: 49 Copynumber: 4.5 Consensus size: 49
185437264 TACATATGTG
* * *
185437274 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
185437323 TGTGATAAGGCCTAATGGCC-ATGTGGTGAATGTGAAA--G--TG--TA
1 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
*
185437365 --TG-TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
*
185437411 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
*
185437460 TGTGATAAGGCCTAATGGCTAATGT
1 TGTGATAAGGCCTAATGGCCAATGT
185437485 AAAATATATG
Statistics
Matches: 147, Mismatches: 5, Indels: 20
0.85 0.03 0.12
Matches are distributed among these distances:
39 15 0.10
40 19 0.13
42 3 0.02
44 4 0.03
46 3 0.02
48 17 0.12
49 86 0.59
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:185437393 original size:88 final size:89
Alignment explanation
Indices: 185437279--185437457 Score: 315
Period size: 88 Copynumber: 2.0 Consensus size: 89
185437269 ATGTGTGTGA
185437279 TAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCC-
1 TAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
185437343 ATGTGGTGAATGTGAAAGTGTATG
66 ATGTGGTGAATGTGAAAGTGTATG
* * * *
185437367 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
185437432 ATGTGGTGAATGTGAAAGTGTATG
66 ATGTGGTGAATGTGAAAGTGTATG
185437456 TA
1 TA
185437458 TATGTGATAA
Statistics
Matches: 86, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
88 60 0.70
89 26 0.30
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.28
Consensus pattern (89 bp):
TAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
ATGTGGTGAATGTGAAAGTGTATG
Found at i:185437495 original size:88 final size:88
Alignment explanation
Indices: 185437287--185437495 Score: 257
Period size: 88 Copynumber: 2.4 Consensus size: 88
185437277 GATAAGGCCG
* * * *
185437287 AATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCATGTGGTGA
1 AATGGCCAATGTGCTGAATGTGAAAATATATGTATATGTGATAAGGCCTAATGGCCATGTGGTGA
*
185437352 ATGTGAAAGTGTATGTAAGGCCT
66 ATGTGAAAGTGTATGTAAGGCAT
* * * *
185437375 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTG
1 AATGGCCAATGTGCTGAATGTGAAAATATATGTATATGTGATAAGGCCTAATGGCC-ATGTGGTG
185437440 AATGTGAAAGTGTATGTATATGTG-AT
65 AATGTGAAAGTGTATGTA-A-G-GCAT
185437466 AA-GGCCTAATG-GCT-AATGT-AAAATATATGT
1 AATGGCC-AATGTGCTGAATGTGAAAATATATGT
185437496 GTGATATGCA
Statistics
Matches: 108, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
88 62 0.57
89 31 0.29
90 7 0.06
91 7 0.06
92 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (88 bp):
AATGGCCAATGTGCTGAATGTGAAAATATATGTATATGTGATAAGGCCTAATGGCCATGTGGTGA
ATGTGAAAGTGTATGTAAGGCAT
Found at i:185437630 original size:37 final size:37
Alignment explanation
Indices: 185437580--185437664 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
185437570 GGAATATGTT
*
185437580 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
185437617 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
185437654 CCGGGTAAGAC
1 CCGGGTAAGAC
185437665 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:185439641 original size:40 final size:40
Alignment explanation
Indices: 185439483--185439725 Score: 346
Period size: 40 Copynumber: 6.1 Consensus size: 40
185439473 GAGAATTGAG
* *
185439483 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
*
185439523 AGTGATATATCC-GGCTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
* *
185439562 AGTGATATATCC-GACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
* * *
185439601 AGTGATGTATCCGGGCAAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
* * *
185439641 AGTGATGTATCCGGGCAAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
* * *
185439681 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
185439721 AGTGA
1 AGTGA
185439726 CGTGTATTCG
Statistics
Matches: 191, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 75 0.39
40 116 0.61
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
Found at i:185439941 original size:29 final size:29
Alignment explanation
Indices: 185439899--185440062 Score: 292
Period size: 29 Copynumber: 5.7 Consensus size: 29
185439889 CGAATGAATA
185439899 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
185439928 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
185439957 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
185439986 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
* *
185440015 GAGGCACTACGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
185440044 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
185440063 TTTTTCAACA
Statistics
Matches: 131, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 131 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:185442712 original size:49 final size:49
Alignment explanation
Indices: 185442652--185442857 Score: 313
Period size: 49 Copynumber: 4.4 Consensus size: 49
185442642 TACATATGTG
* * * *
185442652 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
185442701 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAA--G--TG--TA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
185442744 --TG-TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
185442790 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
185442839 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
185442858 TAATGTAAAA
Statistics
Matches: 144, Mismatches: 4, Indels: 18
0.87 0.02 0.11
Matches are distributed among these distances:
40 33 0.23
41 2 0.01
42 1 0.01
43 2 0.01
44 2 0.01
45 2 0.01
46 2 0.01
47 1 0.01
48 2 0.01
49 97 0.67
ACGTcount: A:0.29, C:0.10, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:185442750 original size:40 final size:40
Alignment explanation
Indices: 185442706--185442836 Score: 181
Period size: 40 Copynumber: 3.0 Consensus size: 40
185442696 GTATATGTGA
185442706 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
1 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
185442746 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTG
1 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAA--G--TG--TA--TG
185442794 ATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
1 -TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
185442835 TA
1 TA
185442837 TATGTGATAA
Statistics
Matches: 82, Mismatches: 0, Indels: 18
0.82 0.00 0.18
Matches are distributed among these distances:
40 35 0.43
41 2 0.02
42 1 0.01
43 2 0.02
44 2 0.02
45 2 0.02
46 2 0.02
47 1 0.01
48 2 0.02
49 33 0.40
ACGTcount: A:0.28, C:0.09, G:0.34, T:0.29
Consensus pattern (40 bp):
TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
Found at i:185442772 original size:89 final size:89
Alignment explanation
Indices: 185442657--185442836 Score: 324
Period size: 89 Copynumber: 2.0 Consensus size: 89
185442647 ATGTGTGTGA
185442657 TAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
185442722 ATGTGGTGAATGTGAAAGTGTATG
66 ATGTGGTGAATGTGAAAGTGTATG
* * * *
185442746 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
185442811 ATGTGGTGAATGTGAAAGTGTATG
66 ATGTGGTGAATGTGAAAGTGTATG
185442835 TA
1 TA
185442837 TATGTGATAA
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 87 1.00
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.28
Consensus pattern (89 bp):
TAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
ATGTGGTGAATGTGAAAGTGTATG
Found at i:185443009 original size:37 final size:37
Alignment explanation
Indices: 185442959--185443043 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
185442949 GGAATATGTT
*
185442959 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
185442996 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
185443033 CCGGGTAAGAC
1 CCGGGTAAGAC
185443044 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:185443837 original size:21 final size:21
Alignment explanation
Indices: 185443813--185443854 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
185443803 TAGAAAGGGA
185443813 ATTAAATAGTGAATAAATTAT
1 ATTAAATAGTGAATAAATTAT
185443834 ATTAAATAGTGAATAAATTAT
1 ATTAAATAGTGAATAAATTAT
185443855 GTAGTCGAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (21 bp):
ATTAAATAGTGAATAAATTAT
Found at i:185446687 original size:49 final size:50
Alignment explanation
Indices: 185446524--185446699 Score: 221
Period size: 52 Copynumber: 3.5 Consensus size: 50
185446514 GATACACGGC
* * * * *
185446524 GGCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAAGT
1 GGCCTTCACATAGTACCACACTTGT-GACCAAGCTATCTTCTTCACAAAGT
*
185446575 GGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAAGC
1 GGCCTTCACATAGTACCACACTTGTGACC-AAGCTATC-TTCTTCACAAAGT
* *
185446627 GGCCTTCACATAGTACCACACTTGTGACCAAGATATC-TCTTCTCAAAGT
1 GGCCTTCACATAGTACCACACTTGTGACCAAGCTATCTTCTTCACAAAGT
*
185446676 GGCC-TCGACATAATACCACACTTG
1 GGCCTTC-ACATAGTACCACACTTG
185446700 AGTCACTAGT
Statistics
Matches: 112, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
48 2 0.02
49 30 0.27
50 2 0.02
51 37 0.33
52 41 0.37
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (50 bp):
GGCCTTCACATAGTACCACACTTGTGACCAAGCTATCTTCTTCACAAAGT
Found at i:185454190 original size:22 final size:23
Alignment explanation
Indices: 185454109--185454189 Score: 110
Period size: 23 Copynumber: 3.6 Consensus size: 23
185454099 TAGCTCGTAT
185454109 GAGCTTACCATTTCAGCTCTTCA
1 GAGCTTACCATTTCAGCTCTTCA
* * * *
185454132 GGGCTTACCGTTTCAGCTCTACG
1 GAGCTTACCATTTCAGCTCTTCA
*
185454155 GAGCTTACCGTTT-AGCTCTTCA
1 GAGCTTACCATTTCAGCTCTTCA
185454177 GAGCTTACCATTT
1 GAGCTTACCATTT
185454190 ATCAACTCAG
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
22 19 0.38
23 31 0.62
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.35
Consensus pattern (23 bp):
GAGCTTACCATTTCAGCTCTTCA
Found at i:185454378 original size:9 final size:9
Alignment explanation
Indices: 185454366--185454459 Score: 81
Period size: 9 Copynumber: 10.9 Consensus size: 9
185454356 TAAGAGTTAT
*
185454366 ATGATTTAC
1 ATGAATTAC
185454375 ATGAATT--
1 ATGAATTAC
185454382 AT-AAGTTAC
1 ATGAA-TTAC
185454391 ATGAATTAC
1 ATGAATTAC
185454400 ATGAATTAC
1 ATGAATTAC
*
185454409 ATGAATTAT
1 ATGAATTAC
185454418 ATGAATTAC
1 ATGAATTAC
* **
185454427 ATGGATTTT
1 ATGAATTAC
*
185454436 ATG-A-TAT
1 ATGAATTAC
185454443 ATGAATTAC
1 ATGAATTAC
*
185454452 ATAAATTA
1 ATGAATTA
185454460 TGTGAGTAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
6 2 0.03
7 9 0.13
8 2 0.03
9 55 0.79
10 2 0.03
ACGTcount: A:0.43, C:0.06, G:0.12, T:0.39
Consensus pattern (9 bp):
ATGAATTAC
Found at i:185454378 original size:25 final size:26
Alignment explanation
Indices: 185454358--185454459 Score: 93
Period size: 25 Copynumber: 4.0 Consensus size: 26
185454348 ATATGATATA
* *
185454358 AGAGTTATATGATTTACATGAATTAT
1 AGAGTTATATGAATTACATGAATTAC
*
185454384 A-AGTTACATGAATTACATGAATTAC
1 AGAGTTATATGAATTACATGAATTAC
* * **
185454409 ATGAATTATATGAATTACATGGATTTT
1 A-GAGTTATATGAATTACATGAATTAC
*
185454436 ATGA--TATATGAATTACATAAATTA
1 A-GAGTTATATGAATTACATGAATTA
185454460 TGTGAGTAAT
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
25 39 0.62
26 1 0.02
27 23 0.37
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.39
Consensus pattern (26 bp):
AGAGTTATATGAATTACATGAATTAC
Found at i:185454382 original size:34 final size:34
Alignment explanation
Indices: 185454330--185454421 Score: 94
Period size: 34 Copynumber: 2.7 Consensus size: 34
185454320 CATTATACCA
* ** * *
185454330 ATATGATTTATAAAAATTATATGATATAAGAGTT
1 ATATGATTTACATGAATTATATGATACAAGAATT
* * *
185454364 ATATGATTTACATGAATTATAAGTTACATGAATT
1 ATATGATTTACATGAATTATATGATACAAGAATT
* *
185454398 ACATGAATTACATGAATTATATGA
1 ATATGATTTACATGAATTATATGA
185454422 ATTACATGGA
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
34 46 1.00
ACGTcount: A:0.45, C:0.04, G:0.12, T:0.39
Consensus pattern (34 bp):
ATATGATTTACATGAATTATATGATACAAGAATT
Found at i:185454472 original size:52 final size:52
Alignment explanation
Indices: 185454359--185454480 Score: 131
Period size: 52 Copynumber: 2.4 Consensus size: 52
185454349 TATGATATAA
* * *
185454359 GAGTTATATGATTTACATGAATTATAAGTTACATGAATTACATGAATTACAT
1 GAGTTATATGAATTACATGAATTATAAGATACATGAATTACATAAATTACAT
* * * * * **
185454411 GAATTATATGAATTACATGGATTTTATGATATATGAATTACATAAATTATGT
1 GAGTTATATGAATTACATGAATTATAAGATACATGAATTACATAAATTACAT
*
185454463 GAGTAATATG-A-TACATGA
1 GAGTTATATGAATTACATGA
185454481 GATACTTATA
Statistics
Matches: 57, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
50 6 0.11
51 1 0.02
52 50 0.88
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.39
Consensus pattern (52 bp):
GAGTTATATGAATTACATGAATTATAAGATACATGAATTACATAAATTACAT
Found at i:185457942 original size:68 final size:67
Alignment explanation
Indices: 185457896--185458053 Score: 280
Period size: 68 Copynumber: 2.3 Consensus size: 67
185457886 ATACTATATA
185457896 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
185457961 AAT
65 AAT
185457964 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
185458029 AAT
65 AAT
* *
185458032 GTAGCTAGGTCGCATGAGTGAT
1 GTAGCTAGGTCACATGTGTGAT
185458054 TCCAAGTGAA
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 88 1.00
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGGAGAGATAA
AT
Found at i:185458127 original size:66 final size:68
Alignment explanation
Indices: 185457930--185458127 Score: 203
Period size: 68 Copynumber: 2.9 Consensus size: 68
185457920 GGGATGTATC
* * *
185457930 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATA-C--GGGA
1 CCATGTAGACAAGAGAGCTAC-T-AGAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
* *
185457992 TGTATC-
63 AGGA-CA
*
185457998 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC-T-AGAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
185458063 AGGACA
63 AGGACA
* *
185458069 CCATGTAGACAAGAGAGCTA-T-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACTAGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
185458128 TTCACCATGT
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
66 24 0.21
67 9 0.08
68 55 0.47
69 2 0.02
70 1 0.01
71 25 0.22
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.22
Consensus pattern (68 bp):
CCATGTAGACAAGAGAGCTACTAGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGG
ACA
Found at i:185460718 original size:68 final size:70
Alignment explanation
Indices: 185460646--185460843 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
185460636 ACACCCTGTA
* * * *
185460646 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
185460708 ATAAAT
65 ATAAAT
*
185460714 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
185460779 ATAAAT
65 ATAAAT
*
185460785 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
185460844 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:185460757 original size:41 final size:41
Alignment explanation
Indices: 185460712--185460829 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
185460702 TGAAAGATAA
185460712 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
185460753 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
185460783 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
185460824 ATGTAG
1 ATGTAG
185460830 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:185460769 original size:71 final size:71
Alignment explanation
Indices: 185460680--185460843 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
185460670 GAGATGTATC
185460680 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
185460745 AGGACA
66 AGGACA
185460751 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
185460816 AGGACA
66 AGGACA
185460822 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
185460844 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:185474656 original size:40 final size:40
Alignment explanation
Indices: 185474601--185474810 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
185474591 AACATTGGAA
185474601 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
185474641 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
185474681 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
185474721 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
185474760 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
185474801 CTATATCCGG
1 ATATATCCGG
185474811 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:185479686 original size:28 final size:29
Alignment explanation
Indices: 185479619--185479690 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
185479609 ATAGTGAATC
*
185479619 CGCACACTTAGTGCTATATACATTCAGCT
1 CGCACACTTAGTGCTATATACATTCAACT
185479648 CGCACACTTAGTGCTATATA-A-TCAAACT
1 CGCACACTTAGTGCTATATACATTC-AACT
185479676 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
185479691 GTACAATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATACATTCAACT
Found at i:185479712 original size:30 final size:28
Alignment explanation
Indices: 185479618--185479719 Score: 89
Period size: 28 Copynumber: 3.5 Consensus size: 28
185479608 TATAGTGAAT
* *
185479618 CCGCACACTTAGTGCTATATACATTC-AGC
1 CCGCACACTTAGTGC--TATACAATCAAAC
* *
185479647 TCGCACACTTAGTGCTATATAATCAAAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* * *
185479675 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATACAA--TCAAAC
*
185479705 CCGCACACTTTGTGC
1 CCGCACACTTAGTGC
185479720 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 7 0.11
28 22 0.36
29 14 0.23
30 18 0.30
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.29
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATACAATCAAAC
Found at i:185487489 original size:68 final size:70
Alignment explanation
Indices: 185487417--185487613 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
185487407 ACACCCTGTA
* * * *
185487417 GTAGCTAGGTCACATGTGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCACATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
185487479 ATAAAT
65 ATAAAT
* *
185487485 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCACATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
185487550 ATAAAT
65 ATAAAT
*
185487556 GTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAG-GAGCTACG
1 GTAGCTAGGTCACATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
185487614 AGACAAATCG
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 23 0.19
69 3 0.03
70 9 0.08
71 83 0.70
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (70 bp):
GTAGCTAGGTCACATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:185487539 original size:71 final size:71
Alignment explanation
Indices: 185487451--185487613 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
185487441 GAGATGTATC
*
185487451 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGA
185487516 AGGACA
66 AGGACA
185487522 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGA
185487587 AGGACA
66 AGGACA
185487593 CCATGTAGACAAG-GAGCTACG
1 CCATGTAGACAAGAGAGCTACG
185487614 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 8 0.09
71 83 0.91
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGA
AGGACA
Found at i:185490335 original size:40 final size:40
Alignment explanation
Indices: 185490291--185490438 Score: 174
Period size: 40 Copynumber: 3.7 Consensus size: 40
185490281 TTAACCACAA
* * *** *
185490291 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
185490331 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
185490371 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
185490411 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAATTGCCTTCGGGTCTTAGCCCGG
185490439 GTATCATTCA
Statistics
Matches: 96, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
39 2 0.02
40 91 0.95
41 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:185498442 original size:40 final size:40
Alignment explanation
Indices: 185498389--185498536 Score: 174
Period size: 40 Copynumber: 3.7 Consensus size: 40
185498379 TTAACCACAA
* * *** *
185498389 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
185498429 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
185498469 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
185498509 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAATTGCCTTCGGGTCTTAGCCCGG
185498537 GTATCATTCA
Statistics
Matches: 96, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
39 2 0.02
40 91 0.95
41 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:185501744 original size:55 final size:54
Alignment explanation
Indices: 185501615--185501811 Score: 247
Period size: 55 Copynumber: 3.6 Consensus size: 54
185501605 TTGGTAAGAT
* * * * *
185501615 AAGGATATCATGTAAGACCATGCCAAGGCATAGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
185501669 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
185501724 AAAGG-TCCCATGTAAGACCATGAT-AAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATG-TCAAGACATGGCATTGATGAGTTCTATAAGGC
*
185501777 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
185501812 ATCGTAAGTT
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
52 5 0.04
53 32 0.26
54 41 0.33
55 42 0.34
56 5 0.04
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:185501946 original size:16 final size:16
Alignment explanation
Indices: 185501924--185501962 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
185501914 GCTTAATTCA
*
185501924 TATTGAGATTGT-AAG
1 TATTGAGATTATCAAG
185501939 TAATTGAGATTATCAAG
1 T-ATTGAGATTATCAAG
185501956 TATTGAG
1 TATTGAG
185501963 TAAGTGATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 16 0.76
17 4 0.19
ACGTcount: A:0.36, C:0.03, G:0.23, T:0.38
Consensus pattern (16 bp):
TATTGAGATTATCAAG
Found at i:185512010 original size:29 final size:29
Alignment explanation
Indices: 185511904--185512065 Score: 150
Period size: 29 Copynumber: 5.6 Consensus size: 29
185511894 GTGACGAGAT
*
185511904 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
185511933 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
185511962 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* ** ***
185511991 CGGCACTGGGTGTGCGAGCTCGG-AGGGTA
1 TGGCACTAAGTGTGCGAGCT-GGAAATATA
** *
185512020 TGGCACTGTGTGTGCGAGCT-TAAAT-TA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
185512047 CGTGGCACTAAGTGTGCGA
1 --TGGCACTAAGTGTGCGA
185512066 AATCGAGTAG
Statistics
Matches: 110, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
27 2 0.02
28 1 0.01
29 105 0.95
30 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:185517795 original size:40 final size:40
Alignment explanation
Indices: 185517666--185517817 Score: 137
Period size: 39 Copynumber: 3.9 Consensus size: 40
185517656 ATGGTAACCC
* * * * * * *
185517666 GCACCAAGGCCTACGGGACTTAACCCGGATATCACGA-TT
1 GCACCAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* * ** *
185517705 GCACAAATGCCTTCGGGTCTTAG-CCGGATAGAATGACTC
1 GCACCAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *
185517744 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACCAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* * *
185517784 GCACCATTGCCTTCGGGTCTTAACCCGGTTATAA
1 GCACCAATGCCTTCGGGTCTTAGCCCGGATATAA
185517818 TTTCCAGCAT
Statistics
Matches: 91, Mismatches: 20, Indels: 3
0.80 0.18 0.03
Matches are distributed among these distances:
38 10 0.11
39 41 0.45
40 40 0.44
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
GCACCAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:185518541 original size:19 final size:19
Alignment explanation
Indices: 185518517--185518554 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
185518507 CAATTTCACA
185518517 ATCATTCTTCAACATCTTC
1 ATCATTCTTCAACATCTTC
185518536 ATCATTCTTCAACATCTTC
1 ATCATTCTTCAACATCTTC
185518555 TTCTTTAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.32, G:0.00, T:0.42
Consensus pattern (19 bp):
ATCATTCTTCAACATCTTC
Found at i:185524850 original size:30 final size:30
Alignment explanation
Indices: 185524816--185524872 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
185524806 TTTTTGAGCA
* * *
185524816 TAGGGGTAAAATGATCATTTTGCCAAAGTC
1 TAGGGGCAAAATGAGCATTTTACCAAAGTC
*
185524846 TAGGGGCAAAATGGGCATTTTACCAAA
1 TAGGGGCAAAATGAGCATTTTACCAAA
185524873 TATGTGAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (30 bp):
TAGGGGCAAAATGAGCATTTTACCAAAGTC
Found at i:185525285 original size:47 final size:48
Alignment explanation
Indices: 185525226--185525528 Score: 218
Period size: 47 Copynumber: 6.4 Consensus size: 48
185525216 CAATGTGAGA
* * *
185525226 CATGTCTAGGACATGCATCAGCCAC-ATTATGAGTGCTAGTATAAGAC
1 CATGTCTGGGACATGCATCAGCCACGATGATGAGTGCTAGTGTAAGAC
* * *
185525273 CATGTCTGGGACATGGCATCGGCGTA-GA-GATGAGTGCCAGTGTAAGA-
1 CATGTCTGGGACAT-GCATCAGC-CACGATGATGAGTGCTAGTGTAAGAC
* *
185525320 CATGTCTGGGACATGCATCAGCCTCGATGATGA-TAGCCAGTGTAAGA-
1 CATGTCTGGGACATGCATCAGCCACGATGATGAGT-GCTAGTGTAAGAC
* * * * * * * *
185525367 CGTGTTTGGGACACGCATCGGCTAAGA-G-T-TGTGCTAGTGTAA-AA
1 CATGTCTGGGACATGCATCAGCCACGATGATGAGTGCTAGTGTAAGAC
* * *
185525411 CATGTCTGGGACATGCATTAG-CACGTAT-ATACGAGAGCTAGTATAAGAC
1 CATGTCTGGGACATGCATCAGCCACG-ATGAT--GAGTGCTAGTGTAAGAC
* * * *
185525460 CATGCCTGGGACAGGGCATCAGCCTCGATGATG-CTAGCTAGTGTAAGAC
1 CATGTCTGGGACA-TGCATCAGCCACGATGATGAGT-GCTAGTGTAAGAC
*
185525509 CATGTCTAGGACATGGCATC
1 CATGTCTGGGACAT-GCATC
185525529 GGCAACTTAT
Statistics
Matches: 197, Mismatches: 39, Indels: 38
0.72 0.14 0.14
Matches are distributed among these distances:
43 3 0.02
44 26 0.13
45 3 0.02
46 11 0.06
47 64 0.32
48 33 0.17
49 44 0.22
50 8 0.04
51 5 0.03
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
CATGTCTGGGACATGCATCAGCCACGATGATGAGTGCTAGTGTAAGAC
Done.