Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 593 of 770
Found at i:185525377 original size:94 final size:91
Alignment explanation
Indices: 185525212--185525472 Score: 244
Period size: 94 Copynumber: 2.8 Consensus size: 91
185525202 AATTTCTTGT
* * * * *
185525212 GTGCCAATGTGAGACATGTCTAGGACATGCATCAGCCACATTATGAGTGCTAGTATAAGACCATG
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGAGTGCCAGTATAAGACCATG
*
185525277 TCTGGGACATGGCATCGGCGT-AGAGATGA
66 TCTGGGACA-CGCATCGGC-TAAGAG-T-A
* * *
185525306 GTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGATGA-TAGCCAGTGTAAGA-CG
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATGATGAGT-GCCAGTATAAGACCA
* *
185525369 TGTTTGGGACACGCATCGGCTAAGAGTT
64 TGTCTGGGACACGCATCGGCTAAGAGTA
* * * * *
185525397 GTGCTAGTGTAAAACATGTCTGGGACATGCATTAG-CACGTAT-ATACGAGAGCTAGTATAAGAC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC--ATGAT--GAGTGCCAGTATAAGAC
*
185525460 CATGCCTGGGACA
62 CATGTCTGGGACA
185525473 GGGCATCAGC
Statistics
Matches: 137, Mismatches: 22, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
90 4 0.03
91 34 0.25
92 14 0.10
93 22 0.16
94 47 0.34
95 16 0.12
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (91 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGAGTGCCAGTATAAGACCATG
TCTGGGACACGCATCGGCTAAGAGTA
Found at i:185525424 original size:91 final size:94
Alignment explanation
Indices: 185525225--185525472 Score: 242
Period size: 91 Copynumber: 2.6 Consensus size: 94
185525215 CCAATGTGAG
* * * *
185525225 ACATGTCTAGGACATGCATCAGCCACATTATGAGTGCTAGTATAAGACCATGTCTGGGACATGGC
1 ACATGTCTGGGACATGCATCAGCCACATGATGAGTGCCAGTATAAGACCATGTCTGGGACATCGC
*
185525290 ATCGGCGTAGAGATGAGTGCCAGTGTAAG
66 ATCGGCGTAGAGATGAGTGCCAGTGTAAA
* * * *
185525319 ACATGTCTGGGACATGCATCAGCCTCGATGATGA-TAGCCAGTGTAAGA-CGTGTTTGGGACA-C
1 ACATGTCTGGGACATGCATCAGCCAC-ATGATGAGT-GCCAGTATAAGACCATGTCTGGGACATC
* *
185525381 GCATCGGC-TA-AGA-GTTGTGCTAGTGTAAA
64 GCATCGGCGTAGAGATG-AGTGCCAGTGTAAA
* * * *
185525410 ACATGTCTGGGACATGCATTAG-CACGTAT-ATACGAGAGCTAGTATAAGACCATGCCTGGGACA
1 ACATGTCTGGGACATGCATCAGCCAC--ATGAT--GAGTGCCAGTATAAGACCATGTCTGGGACA
185525473 GGGCATCAGC
Statistics
Matches: 126, Mismatches: 20, Indels: 17
0.77 0.12 0.10
Matches are distributed among these distances:
90 5 0.04
91 37 0.29
92 14 0.11
93 18 0.14
94 36 0.29
95 16 0.13
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (94 bp):
ACATGTCTGGGACATGCATCAGCCACATGATGAGTGCCAGTATAAGACCATGTCTGGGACATCGC
ATCGGCGTAGAGATGAGTGCCAGTGTAAA
Found at i:185528097 original size:55 final size:55
Alignment explanation
Indices: 185528037--185528170 Score: 223
Period size: 55 Copynumber: 2.4 Consensus size: 55
185528027 ACCATGGAAT
* *
185528037 CGATATATGTGTGTGAGTAAGACCACATTTATATGTTGGCATCGATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCACATTTATACGTTGGCATCGATATGTGACTC
* * *
185528092 CGATATATGTGTGCGAGTAAGACCACGTTTATGCGTTGGCATCGATATGTGACTT
1 CGATATATGTGTGCGAGTAAGACCACATTTATACGTTGGCATCGATATGTGACTC
185528147 CGATATATGTGTGCGAGTAAGACC
1 CGATATATGTGTGCGAGTAAGACC
185528171 CTGTCTGAGA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 74 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (55 bp):
CGATATATGTGTGCGAGTAAGACCACATTTATACGTTGGCATCGATATGTGACTC
Found at i:185532468 original size:40 final size:40
Alignment explanation
Indices: 185532413--185532622 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
185532403 AACATTGGAA
185532413 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
185532453 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
185532493 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
185532533 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
185532572 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
185532613 CTATATCCGG
1 ATATATCCGG
185532623 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:185540629 original size:39 final size:40
Alignment explanation
Indices: 185540526--185540732 Score: 285
Period size: 40 Copynumber: 5.2 Consensus size: 40
185540516 AACATTGGAA
185540526 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
185540566 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
185540606 ATATATCC-GGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
185540645 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
185540684 ACCAAATCCGGGTTATGACCCGAA-GCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
185540724 CTATATCCG
1 ATATATCCG
185540733 TTAAATCCGA
Statistics
Matches: 147, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 56 0.38
40 91 0.62
ACGTcount: A:0.26, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:185540693 original size:79 final size:80
Alignment explanation
Indices: 185540530--185540732 Score: 277
Period size: 79 Copynumber: 2.6 Consensus size: 80
185540520 TTGGAAATAT
185540530 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
* * * *
185540595 CGTGCGAGTTGATAT
66 CGTGCAAGTTCACAA
*
185540610 ATCC-GGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCCTT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
*
185540674 TGTGCAAG-TCACCAA
66 CGTGCAAGTTCA-CAA
* * * * *
185540689 ATCCGGGTTATGACCCGAA-GCAATCGTGCGAGTCGCTATATCCG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCG
185540733 TTAAATCCGA
Statistics
Matches: 110, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
78 2 0.02
79 92 0.84
80 16 0.15
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTCACAA
Found at i:185549873 original size:80 final size:80
Alignment explanation
Indices: 185549789--185549937 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
185549779 TATGGTAACC
* * * *
185549789 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
185549853 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
185549869 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
185549934 CCGG
66 CCGG
185549938 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:185549879 original size:40 final size:38
Alignment explanation
Indices: 185549830--185549937 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
185549820 ATCACGATTT
*
185549830 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
185549870 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
185549910 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
185549938 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:185553663 original size:28 final size:28
Alignment explanation
Indices: 185553601--185553664 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
185553591 TGGGAATTAG
* * *
185553601 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCTTGATGGGCCATATGAACGAGA
*
185553629 TTGGGCTTGATGGGCCATGTGAACGAGA
1 TTGGGCTTGATGGGCCATATGAACGAGA
185553657 TTGGGCTT
1 TTGGGCTT
185553665 AAAGGGGCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.19, C:0.14, G:0.38, T:0.30
Consensus pattern (28 bp):
TTGGGCTTGATGGGCCATATGAACGAGA
Found at i:185553680 original size:29 final size:28
Alignment explanation
Indices: 185553612--185553680 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
185553602 TGGGCCTGAT
* * * *
185553612 GGGCCATATGAATGTGATTGGGCTTGAT
1 GGGCCATATGAACGAGATTGGGCTTAAG
*
185553640 GGGCCATGTGAACGAGATTGGGCTTAAAG
1 GGGCCATATGAACGAGATTGGGCTT-AAG
*
185553669 GGGCCAAATGAA
1 GGGCCATATGAA
185553681 TAAGTGTGGA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
28 22 0.67
29 11 0.33
ACGTcount: A:0.28, C:0.13, G:0.36, T:0.23
Consensus pattern (28 bp):
GGGCCATATGAACGAGATTGGGCTTAAG
Found at i:185554011 original size:27 final size:26
Alignment explanation
Indices: 185553981--185554372 Score: 250
Period size: 27 Copynumber: 14.6 Consensus size: 26
185553971 AATAAAGAGT
185553981 AATTACCGAAATACCCCTAGTTTGTAA
1 AATTACCGAAATA-CCCTAGTTTGTAA
* * *
185554008 AATTACAGAAATACCCTCAATTTGCAA
1 AATTACCGAAATACCCT-AGTTTGTAA
* * *
185554035 AATTACTG-GATCACCCTTGATTTGTAA
1 AATTACCGAAAT-ACCCTAG-TTTGTAA
*
185554062 AATTACCGAAATACCCTTGATTTGTAA
1 AATTACCGAAATACCCTAG-TTTGTAA
* * * *
185554089 AATTACCGAAATACCTTCGATTGTGA
1 AATTACCGAAATACCCTAGTTTGTAA
* * *
185554115 AATTACTGAAATAACCTCAATTTGTAA
1 AATTACCGAAATACCCT-AGTTTGTAA
** * *
185554142 AATTACTAAAATACCAC-CGATTTGTGA
1 AATTACCGAAATACC-CTAG-TTTGTAA
* *
185554169 AATTACCGAAACACCCTCAATTTGTAA
1 AATTACCGAAATACCCT-AGTTTGTAA
* * * *
185554196 AATTACCAAAACACCCTCGATTTGTAC
1 AATTACCGAAATACCCTAG-TTTGTAA
* * *
185554223 AATTACTGAAATACCCTCGATTTGTAT
1 AATTACCGAAATACCCTAG-TTTGTAA
* *
185554250 AATTACTGAAATACCCTCAATTTGTAA
1 AATTACCGAAATACCCT-AGTTTGTAA
* ** *
185554277 AATTA-CGAAACACCCCCGATTTATAA
1 AATTACCGAAATACCCTAG-TTTGTAA
* * * *
185554303 AACTATCGAAATACCCTTGTAGTGTAA
1 AATTACCGAAATACCCTAGT-TTGTAA
* * *
185554330 AATTACTGAAATACCCTTGTAGTGTAA
1 AATTACCGAAATACCCTAGT-TTGTAA
* *
185554357 AATGACCGACATACCC
1 AATTACCGAAATACCC
185554373 CTGTAGGGTA
Statistics
Matches: 290, Mismatches: 61, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
26 45 0.16
27 242 0.83
28 3 0.01
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (26 bp):
AATTACCGAAATACCCTAGTTTGTAA
Found at i:185554064 original size:54 final size:53
Alignment explanation
Indices: 185554001--185554346 Score: 306
Period size: 54 Copynumber: 6.5 Consensus size: 53
185553991 ATACCCCTAG
* * * *
185554001 TTTGTAAAATTACAGAAATACCCTCAATTTGCAAAATTACTGGATCACCCTTGA
1 TTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACTGAAT-ACCCTCGA
** * *
185554055 TTTGTAAAATTACCGAAATACCCTTGATTTGTAAAATTACCGAAATACCTTCGA
1 TTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACTG-AATACCCTCGA
* * * *
185554109 -TTGTGAAATTACTGAAATAACCTCAATTTGTAAAATTACTAAAATACCAC-CGA
1 TTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACT-GAATACC-CTCGA
* * ** *
185554162 TTTGTGAAATTACCGAAACACCCTCAATTTGTAAAATTACCAAAACACCCTCGA
1 TTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTA-CTGAATACCCTCGA
* * * * *
185554216 TTTGTACAATTACTGAAATACCCTCGATTTGTATAATTACTGAAATACCCTCAA
1 TTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACTG-AATACCCTCGA
* * * * * *
185554270 TTTGTAAAATTA-CGAAACACCCCCGATTTATAAAACTA-TCGAAATACCCTTG-
1 TTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACT-G-AATACCCTCGA
* *
185554322 TAGTGTAAAATTACTGAAATACCCT
1 T-TTGTAAAATTACCGAAATACCCT
185554347 TGTAGTGTAA
Statistics
Matches: 238, Mismatches: 44, Indels: 20
0.79 0.15 0.07
Matches are distributed among these distances:
52 2 0.01
53 85 0.36
54 148 0.62
55 3 0.01
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (53 bp):
TTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACTGAATACCCTCGA
Found at i:185554235 original size:81 final size:81
Alignment explanation
Indices: 185553981--185554346 Score: 391
Period size: 81 Copynumber: 4.5 Consensus size: 81
185553971 AATAAAGAGT
* * * * *
185553981 AATTACCGAAATACCC-CTAGTTTGTAAAATTACAGAAATACCCTCAATTTGCAAAATTACTGGA
1 AATTACCGAAATACCCTCGA-TTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCGAA
* *
185554045 TCACCCTTGATTTGTAA
65 ACACCCTCGATTTGTAA
* * * * *
185554062 AATTACCGAAATACCCTTGATTTGTAAAATTACCGAAATACCTTCGA-TTGTGAAATTACTGAAA
1 AATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCGAAA
* * *
185554126 TAACCTCAATTTGTAA
66 CACCCTCGATTTGTAA
** * * *
185554142 AATTACTAAAATACCAC-CGATTTGTGAAATTACCGAAACACCCTCAATTTGTAAAATTACCAAA
1 AATTACCGAAATACC-CTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCGAA
*
185554206 ACACCCTCGATTTGTAC
65 ACACCCTCGATTTGTAA
* * *
185554223 AATTACTGAAATACCCTCGATTTGTATAATTACTGAAATACCCTCAATTTGTAAAATTA-CGAAA
1 AATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCGAAA
* *
185554287 CACCCCCGATTTATAA
66 CACCCTCGATTTGTAA
* * * * *
185554303 AACTATCGAAATACCCTTG-TAGTGTAAAATTACTGAAATACCCT
1 AATTACCGAAATACCCTCGAT-TTGTAAAATTACCGAAATACCCT
185554347 TGTAGTGTAA
Statistics
Matches: 238, Mismatches: 42, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
79 1 0.00
80 117 0.49
81 119 0.50
82 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (81 bp):
AATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCGAAA
CACCCTCGATTTGTAA
Found at i:185554343 original size:107 final size:107
Alignment explanation
Indices: 185553981--185554346 Score: 425
Period size: 107 Copynumber: 3.4 Consensus size: 107
185553971 AATAAAGAGT
* * * * *
185553981 AATTACCGAAATACCCCTAGTTTGTAAAATTACAGAAATACCCTCAATTTGCAAAATTACTG-GA
1 AATTACCGAAATA-CCCTTGATTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAA
* * *
185554045 TCACCCTTGATTTGTAAAATTACCGAAATACCCTTGATTTGTAA
65 T-ACCCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAA
* * *
185554089 AATTACCGAAATA-CCTTCGATTGTGAAATTACTGAAATAACCTCAATTTGTAAAATTACTAAAA
1 AATTACCGAAATACCCTT-GATTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAA
* *
185554153 TACCAC-CGATTTGTGAAATTACCGAAACACCCTCAATTTGTAA
65 TACC-CTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAA
* * * * * *
185554196 AATTACCAAAACACCCTCGATTTGTACAATTACTGAAATACCCTCGATTTGTATAATTACTGAAA
1 AATTACCGAAATACCCTTGA-TTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAA
* * *
185554261 TACCCTCAATTTGTAAAATTA-CGAAACACCCCCGATTTATAA
65 TACCCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAA
* * *
185554303 AACTATCGAAATACCCTTGTAGTGTAAAATTACTGAAATACCCT
1 AATTACCGAAATACCCTTG-ATTGTAAAATTACTGAAATACCCT
185554347 TGTAGTGTAA
Statistics
Matches: 217, Mismatches: 34, Indels: 15
0.82 0.13 0.06
Matches are distributed among these distances:
106 3 0.01
107 139 0.64
108 75 0.35
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (107 bp):
AATTACCGAAATACCCTTGATTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAAT
ACCCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAA
Found at i:185554359 original size:80 final size:81
Alignment explanation
Indices: 185554003--185554346 Score: 257
Period size: 80 Copynumber: 4.3 Consensus size: 81
185553993 ACCCCTAGTT
* * * *** * ** * *
185554003 TGTAAAATTACAGAAATACCCTCAATTTGCAAAATTACTGGATCACCCTTGATTTGTAAAATTAC
1 TGTAAAATTACTGAAATACCCTCAATGTGTAAAATTACCAAAACACCCCCGATTTATAAAACTAC
* * *
185554068 CGAAATACCCTTGATT
66 TGAAATACCCTCGATG
* * * * ** * * * * * *
185554084 TGTAAAATTACCGAAATACCTTCGAT-TGTGAAATTACTGAAATAACCTCAATTTGTAAAATTAC
1 TGTAAAATTACTGAAATACCCTCAATGTGTAAAATTACCAAAACACCCCCGATTTATAAAACTAC
* *
185554148 TAAAATACCAC-CGATT
66 TGAAATACC-CTCGATG
* * * * * * * *
185554164 TGTGAAATTACCGAAACACCCTCAATTTGTAAAATTACCAAAACACCCTCGATTTGTACAATTAC
1 TGTAAAATTACTGAAATACCCTCAATGTGTAAAATTACCAAAACACCCCCGATTTATAAAACTAC
*
185554229 TGAAATACCCTCGATT
66 TGAAATACCCTCGATG
* * *
185554245 TGTATAATTACTGAAATACCCTCAATTTGTAAAATTA-CGAAACACCCCCGATTTATAAAACTA-
1 TGTAAAATTACTGAAATACCCTCAATGTGTAAAATTACCAAAACACCCCCGATTTATAAAACTAC
*
185554308 TCGAAATACCCTTG-TAG
66 T-GAAATACCCTCGAT-G
185554325 TGTAAAATTACTGAAATACCCT
1 TGTAAAATTACTGAAATACCCT
185554347 TGTAGTGTAA
Statistics
Matches: 220, Mismatches: 38, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
79 2 0.01
80 117 0.53
81 101 0.46
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (81 bp):
TGTAAAATTACTGAAATACCCTCAATGTGTAAAATTACCAAAACACCCCCGATTTATAAAACTAC
TGAAATACCCTCGATG
Found at i:185554377 original size:27 final size:27
Alignment explanation
Indices: 185554309--185554389 Score: 117
Period size: 27 Copynumber: 3.0 Consensus size: 27
185554299 ATAAAACTAT
*
185554309 CGAAATACCCTTGTAGTGTAAAATTAC
1 CGAAATACCCTTGTAGTGTAAAATGAC
*
185554336 TGAAATACCCTTGTAGTGTAAAATGAC
1 CGAAATACCCTTGTAGTGTAAAATGAC
* * *
185554363 CGACATACCCCTGTAGGGTAAAATGAC
1 CGAAATACCCTTGTAGTGTAAAATGAC
185554390 TATTTTGCCC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.26
Consensus pattern (27 bp):
CGAAATACCCTTGTAGTGTAAAATGAC
Found at i:185556348 original size:40 final size:40
Alignment explanation
Indices: 185556222--185556350 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 40
185556212 TGCTGGAAAC
* * * *
185556222 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGT
* * ***
185556262 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACAT
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGT
*
185556302 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGGT
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGGT
185556342 TATATCCGG
1 TATATCCGG
185556351 TTATATTCCG
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGT
Found at i:185556954 original size:34 final size:34
Alignment explanation
Indices: 185556910--185556974 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
185556900 ACCCTAGTCG
185556910 CAGCAGGTGCTCCCCTCTGCTCCACCACCGACGC
1 CAGCAGGTGCTCCCCTCTGCTCCACCACCGACGC
* *
185556944 CAGCATGTGCTCCCCTCTGCTCCACTACCGA
1 CAGCAGGTGCTCCCCTCTGCTCCACCACCGA
185556975 TTTCTGCCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.15, C:0.48, G:0.18, T:0.18
Consensus pattern (34 bp):
CAGCAGGTGCTCCCCTCTGCTCCACCACCGACGC
Found at i:185558421 original size:20 final size:21
Alignment explanation
Indices: 185558377--185558432 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
185558367 CTATTACTTC
185558377 TTTATTATTTTA-TTACTATT
1 TTTATTATTTTATTTACTATT
* *
185558397 GTTATTATTTTATTTTC-ATT
1 TTTATTATTTTATTTACTATT
185558417 TTTATTTTATTTTATT
1 TTTA--TTATTTTATT
185558433 ATGCTGCCCT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 17 0.57
21 3 0.10
22 10 0.33
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.73
Consensus pattern (21 bp):
TTTATTATTTTATTTACTATT
Found at i:185569586 original size:1 final size:1
Alignment explanation
Indices: 185569580--185569606 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
185569570 TACTTCGCCT
185569580 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
185569607 GGAGAGAGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:185570958 original size:86 final size:85
Alignment explanation
Indices: 185570779--185571064 Score: 322
Period size: 86 Copynumber: 3.3 Consensus size: 85
185570769 GTCGTAAGGT
* *** *
185570779 CTTAAACCCCTAAGCAGTAGGGAAACAGACCAAATTGCAGATCTTATCCCCTAAGCAGTAGTGGT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCCCCTAAGCAGTAGTGGA
*
185570844 GTAGATCGAAGACGAAAAAC
66 GCAGATCGAAGACGAAAAAC
*
185570864 CTTAAACCCCTAAGCAGTGGGGTAACAGGTTAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATC-CCCTAAGCAGTAGTGG
* *
185570929 AGCAGATCGAAGACGAAGAGC
65 AGCAGATCGAAGACGAAAAAC
** * * **
185570950 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAGTTTACAGATCTAAAACCCTAAGCAGTAG-GA
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTT-AAATTGCAGATCTTATCCCCTAAGCAGTAGTG-
* * * * * * * *
185571014 AAACGGATCAAATATGACAAGC
64 GAGCAGATCGAAGACGAAAAAC
*
185571036 CTTAATCCCCTAAGCAGTAGGGTAACAGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGG
185571065 CTGTAAATCA
Statistics
Matches: 173, Mismatches: 25, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
85 44 0.25
86 118 0.68
87 11 0.06
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (85 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCCCCTAAGCAGTAGTGGA
GCAGATCGAAGACGAAAAAC
Found at i:185570965 original size:44 final size:43
Alignment explanation
Indices: 185570826--185570969 Score: 116
Period size: 44 Copynumber: 3.3 Consensus size: 43
185570816 CAGATCTTAT
* * *
185570826 CCCCTAAGCAGTAGTGGTGTAGATCGAAGACGAAAAACCTTAAA
1 CCCCTAAGCAGTAGTGGAGCAGATCGAAGACG-AAGACCTTAAA
* * * * * * * *
185570870 CCCCTAAGCAGT-GGGGTAACAGGT-TAA-ATTGCAGATCTT-AT
1 CCCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CGAAGACCTTAAA
185570911 CTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAGCCTTAAA
1 C-CCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGA-CCTTAAA
185570956 CCCCTAAGCAGTAG
1 CCCCTAAGCAGTAG
185570970 GGTAACAGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 16
0.68 0.18 0.15
Matches are distributed among these distances:
41 2 0.03
42 22 0.30
43 15 0.21
44 32 0.44
45 2 0.03
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (43 bp):
CCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGACCTTAAA
Found at i:185571637 original size:34 final size:34
Alignment explanation
Indices: 185571593--185571657 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
185571583 ACCCTAGCCG
185571593 CAGCAGGTGCTCCCCTCTGCTCCACCACCGACGC
1 CAGCAGGTGCTCCCCTCTGCTCCACCACCGACGC
* *
185571627 CAGCATGTGCTCCCCTCTGCTCCACTACCGA
1 CAGCAGGTGCTCCCCTCTGCTCCACCACCGA
185571658 TTTCTGCCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.15, C:0.48, G:0.18, T:0.18
Consensus pattern (34 bp):
CAGCAGGTGCTCCCCTCTGCTCCACCACCGACGC
Found at i:185573103 original size:20 final size:21
Alignment explanation
Indices: 185573059--185573114 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
185573049 CTATTACTTC
185573059 TTTATTATTTTA-TTACTATT
1 TTTATTATTTTATTTACTATT
* *
185573079 GTTATTATTTTATTTTC-ATT
1 TTTATTATTTTATTTACTATT
185573099 TTTATTTTATTTTATT
1 TTTA--TTATTTTATT
185573115 ATGCTGCCCT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 17 0.57
21 3 0.10
22 10 0.33
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.73
Consensus pattern (21 bp):
TTTATTATTTTATTTACTATT
Found at i:185581767 original size:29 final size:29
Alignment explanation
Indices: 185581706--185581804 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
185581696 ACAGTAAGTC
185581706 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
185581734 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
185581763 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
185581791 CGCACACTTAGTGC
1 CGCACACTTAGTGC
185581805 CAATCTCATT
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:185582260 original size:2 final size:2
Alignment explanation
Indices: 185582255--185582293 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
185582245 TCACACATGC
185582255 AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
185582294 GGCCGAATGT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:185599305 original size:40 final size:40
Alignment explanation
Indices: 185599260--185599389 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
185599250 CGGAATATAA
185599260 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
185599300 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
185599340 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
185599380 CCGGATATAA
1 CCGGATATAA
185599390 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:185599404 original size:40 final size:39
Alignment explanation
Indices: 185599276--185599426 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
185599266 ATAACCATGT
* * *
185599276 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
185599316 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
185599356 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
185599395 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
185599427 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:185599410 original size:80 final size:79
Alignment explanation
Indices: 185599260--185599426 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
185599250 CGGAATATAA
*
185599260 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
185599325 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
185599340 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
185599402 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
185599419 CCGGATAT
1 CCGGATAT
185599427 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:185607312 original size:40 final size:40
Alignment explanation
Indices: 185607267--185607433 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
185607257 CGGAATATAA
185607267 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
185607307 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
185607347 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
185607387 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
185607426 CCGGATAT
1 CCGGATAT
185607434 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:185615256 original size:40 final size:40
Alignment explanation
Indices: 185615211--185615377 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
185615201 CGGAATATAA
185615211 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
185615251 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
185615291 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
185615331 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
185615370 CCGGATAT
1 CCGGATAT
185615378 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:185621076 original size:44 final size:43
Alignment explanation
Indices: 185620901--185621486 Score: 403
Period size: 44 Copynumber: 13.4 Consensus size: 43
185620891 GAGTTCTTTG
*
185620901 ATCTGCT-TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCC-A
* * *
185620944 ATCTGCTATCTTC-AACT-TGCCCTATAAACACA-GG-TGCC-
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCA
* * * * * *
185620982 ATGCTG-AAGTCTTCGATCTGCTTCACTGTAAGCATAGGAATGTCA
1 AT-CTGCTA-TCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCA
**
185621027 GATCTGCTATCTTCGATCTAATCCCTATAAGCACAGGGATGCCAA
1 -ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCC-A
* * * *
185621072 ATCTGCTGTTTTTC-AACTTGTTCTCTATAAGCACAGGGATGCC-
1 ATCTGCT-ATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCA
** * ** * * *
185621115 ATGCTGAAATCTTTGATCTGCTTTACTGTAAGCACAGGAATGTCA
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCA
*
185621160 GATCTGCTATCTTCGATCTGTTCACTATAAGCACAGGGATGCC-
1 -ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCA
* ** ** * * *
185621203 TTGCTGAAATCTTCGATCTGCTTTACTGTAAGCACAGGAATGTCA
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCA
*
185621248 GATCTGTTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 -ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCC-A
* * * *
185621293 ATCTGCTGTTTTC-AACTTGTTCCCTATAAGCATAGGGATGCC-
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCA
* * * * * *
185621335 A--TGCAAAATCTTTCGATCTGCTTCACTCTAAGCACAAGAATGTCA
1 ATCTGC--TATC-TTCGATCTG-TTCCCTATAAGCACAGGGATGCCA
185621380 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 -ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCC-A
* * *
185621425 ATCTACTATCTTC-AACTTGTTCCCTATAAGCACAGAGATGCC-
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCA
**
185621467 ATGCTGAAATCTTCGATCTG
1 AT-CTGCTATCTTCGATCTG
185621487 CTTCACTGTA
Statistics
Matches: 419, Mismatches: 86, Indels: 76
0.72 0.15 0.13
Matches are distributed among these distances:
38 3 0.01
39 8 0.02
40 10 0.02
41 2 0.00
42 29 0.07
43 52 0.12
44 222 0.53
45 80 0.19
46 10 0.02
48 3 0.01
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.31
Consensus pattern (43 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCA
Found at i:185621158 original size:133 final size:128
Alignment explanation
Indices: 185620900--185621202 Score: 446
Period size: 133 Copynumber: 2.3 Consensus size: 128
185620890 TGAGTTCTTT
*
185620900 GATCTGCT-TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGC
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGC
* *
185620964 CCTATAAACACAGGTGCCATGCTGAAGTCTTCGATCTGCTTCACTGTAAGCATAGGAATGTCA
66 CCTATAAACACAGGTGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCA
** * *
185621027 GATCTGCTATCTTCGATCTAATCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTTCAACTTG
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCT-ATCTTCAACTTG
* * * *
185621092 TTCTCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTGCTTTACTGTAAGCACAGGAATG
65 --CCCTATAAACACA-GG-TGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATG
185621157 TCA
126 TCA
*
185621160 GATCTGCTATCTTCGATCTGTTCACTATAAGCACAGGGATGCC
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCC
185621203 TTGCTGAAAT
Statistics
Matches: 156, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
127 8 0.05
128 40 0.26
129 10 0.06
131 11 0.07
132 2 0.01
133 85 0.54
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (128 bp):
GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGC
CCTATAAACACAGGTGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCA
Found at i:185621314 original size:132 final size:132
Alignment explanation
Indices: 185621143--185621505 Score: 534
Period size: 132 Copynumber: 2.8 Consensus size: 132
185621133 TGCTTTACTG
* * * * * *
185621143 TAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCTGTTCACTATAAGCACAGGGATGCCTTGC
1 TAAGCACAGGGATGCCAAATCTGCTATCTTCAACT-TGTTCCCTATAAGCACAGGGATGCCATGC
* *
185621207 TGAAATCTTCGATCTGCTTTACTGTAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCC
65 TGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCC
185621272 CTA
130 CTA
* * *
185621275 TAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGC-
1 TAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCT
* * *
185621339 AAAATCTTTCGATCTGCTTCACTCTAAGCACAAGAATGTCAGATCTGCTATCTTCGATCTGTTCC
66 GAAATC-TTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCC
185621404 CTA
130 CTA
* *
185621407 TAAGCACAGGGATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAGCACAGAGATGCCATGCT
1 TAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCT
*
185621472 GAAATCTTCGATCTGCTTCACTGTAA-CTCAGGAA
66 GAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
185621506 GGCGATATCT
Statistics
Matches: 205, Mismatches: 23, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
131 11 0.05
132 188 0.92
133 6 0.03
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
TAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCT
GAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCC
TA
Found at i:185622068 original size:205 final size:204
Alignment explanation
Indices: 185621564--185622318 Score: 1162
Period size: 205 Copynumber: 3.7 Consensus size: 204
185621554 AAATCTATTT
* * * * ** *
185621564 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTACTTTAACGTAAGCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCAC
* * * *
185621629 GTGAAAG-CAAATCAACTATGAT-TTGATTTGCTCCTTGTAAGCACAACGACGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATG-TCTTGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * *
185621692 GGATCCGCTTCAGCAT-AAA-CATCCGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGT
130 GGATCTGCTTCAG--TGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGT
185621755 GAAGATGCCAAA
193 GAAGATGCCAAA
* *
185621767 CTTTGATTCG-TCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCAC
* * *
185621831 GTAAAAGACAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTT-GATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
*
185621896 GGATTTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
130 GGATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
185621961 AGATGCCAAA
195 AGATGCCAAA
* *
185621971 CTTCGATTCATTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCAC
*
185622036 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTT-GATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
185622101 GGATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
130 GGATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
185622166 AGATGCCAAA
195 AGATGCCAAA
* * * *
185622176 CTTCGATTCGTTCTCTAACAATACAAAGACGACAAATCATCTTAGATTTTC-TTCATGGTAATCA
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTTC-TCGTAATCA
*
185622240 CGTGAAAGCCAAATTAGCTATGTCTTGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
65 CGTGAAAGCCAAATCAGCTATGTCTTGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
185622305 GGATCTGCTTCAGT
130 GGATCTGCTTCAGT
185622319 ATAAATTTAC
Statistics
Matches: 513, Mismatches: 32, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
202 55 0.11
203 25 0.05
204 163 0.32
205 270 0.53
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (204 bp):
CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCAC
GTGAAAGCCAAATCAGCTATGTCTTGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTG
GATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAA
GATGCCAAA
Found at i:185630258 original size:13 final size:15
Alignment explanation
Indices: 185630228--185630258 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
185630218 TTCCAGATTT
185630228 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
185630243 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
185630258 T
1 T
185630259 GGAAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTCTACCTCTC
Found at i:185630343 original size:15 final size:14
Alignment explanation
Indices: 185630301--185630350 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
185630291 ATAACTTTGA
*
185630301 ATGCAAATGATGTG
1 ATGCAAATGATGAG
185630315 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
185630330 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
185630344 ATGCAAA
1 ATGCAAA
185630351 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:185634853 original size:40 final size:40
Alignment explanation
Indices: 185634732--185634868 Score: 224
Period size: 39 Copynumber: 3.5 Consensus size: 40
185634722 ATGCTACTTG
* *
185634732 TTTTATTATTAATTAAAACTACTCTCCCATACTATTTTG-
1 TTTTATTATTAATTAAAACTATTCCCCCATACTATTTTGT
*
185634771 TTTTATTATTAATTAAAACTATT-CCCCATACTATTTTAT
1 TTTTATTATTAATTAAAACTATTCCCCCATACTATTTTGT
*
185634810 TTTTATTATTAATTAAAACCATTCCCCCATACTATTTTGT
1 TTTTATTATTAATTAAAACTATTCCCCCATACTATTTTGT
185634850 TTTTATTATTAATTAAAAC
1 TTTTATTATTAATTAAAAC
185634869 ATACTTATTT
Statistics
Matches: 91, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
38 13 0.14
39 44 0.48
40 34 0.37
ACGTcount: A:0.33, C:0.16, G:0.01, T:0.50
Consensus pattern (40 bp):
TTTTATTATTAATTAAAACTATTCCCCCATACTATTTTGT
Found at i:185636751 original size:22 final size:23
Alignment explanation
Indices: 185636726--185636771 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
185636716 AGGAGAGGGG
185636726 ATCGATGGTATTTTGAGGA-AGA
1 ATCGATGGTATTTTGAGGAGAGA
* *
185636748 ATCGATTGTATTTTGGGGAGAGA
1 ATCGATGGTATTTTGAGGAGAGA
185636771 A
1 A
185636772 GAGATTGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.30, C:0.04, G:0.33, T:0.33
Consensus pattern (23 bp):
ATCGATGGTATTTTGAGGAGAGA
Found at i:185636777 original size:23 final size:22
Alignment explanation
Indices: 185636733--185636782 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
185636723 GGGATCGATG
**
185636733 GTATTTTGAGGAAGAATCGATT
1 GTATTTTGAGGAAGAAGAGATT
*
185636755 GTATTTTGGGGAGAGAAGAGATT
1 GTATTTTGAGGA-AGAAGAGATT
185636778 GTATT
1 GTATT
185636783 AGAGGGGTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.30, C:0.02, G:0.32, T:0.36
Consensus pattern (22 bp):
GTATTTTGAGGAAGAAGAGATT
Found at i:185637352 original size:22 final size:22
Alignment explanation
Indices: 185637326--185637368 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
185637316 TTTTTTTGTT
*
185637326 GTTTTTTT-TCTTAAAAAAAAG
1 GTTTTTTTATCATAAAAAAAAG
*
185637347 GTTTTTTTATGATAAAAAAAAG
1 GTTTTTTTATCATAAAAAAAAG
185637369 AGAAAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.42, C:0.02, G:0.12, T:0.44
Consensus pattern (22 bp):
GTTTTTTTATCATAAAAAAAAG
Found at i:185637451 original size:38 final size:38
Alignment explanation
Indices: 185637384--185637532 Score: 253
Period size: 38 Copynumber: 3.9 Consensus size: 38
185637374 ATAAAGTATG
*
185637384 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATG
1 GTTTTAATTAATAAT-AAAACAAAATAGTATGGGGAATA
185637423 GTTTTAATTAATAATAAAACAAAATAGTATGGGGAATA
1 GTTTTAATTAATAATAAAACAAAATAGTATGGGGAATA
*
185637461 GTTTTAATTAATAATAAAACAAAATAGTATGGGGAGTA
1 GTTTTAATTAATAATAAAACAAAATAGTATGGGGAATA
* *
185637499 GTTTTAATTAATAATAAAACAAAGTAGCATGGGG
1 GTTTTAATTAATAATAAAACAAAATAGTATGGGG
185637533 GAGTGGAATC
Statistics
Matches: 106, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
38 91 0.86
39 15 0.14
ACGTcount: A:0.48, C:0.03, G:0.18, T:0.31
Consensus pattern (38 bp):
GTTTTAATTAATAATAAAACAAAATAGTATGGGGAATA
Found at i:185642026 original size:15 final size:15
Alignment explanation
Indices: 185642006--185642036 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
185641996 TTTACTTTCC
185642006 AGAGAGGTAGAAAAG
1 AGAGAGGTAGAAAAG
185642021 AGAGAGGTAGAAAAG
1 AGAGAGGTAGAAAAG
185642036 A
1 A
185642037 AAATCTGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.39, T:0.06
Consensus pattern (15 bp):
AGAGAGGTAGAAAAG
Found at i:185649563 original size:44 final size:44
Alignment explanation
Indices: 185649451--185650036 Score: 451
Period size: 44 Copynumber: 13.4 Consensus size: 44
185649441 GACGGGGGGT
* * * * * * *
185649451 AGATCAAAGATAGCAGATATCGCCTTCCTGAG-TTACAGTGAAGC
1 AGATCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAA-C
* ** *
185649495 AGATCAAAGATTTCAG-CATGGCATCCCTGTGCTTATAGGGAAC
1 AGATCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
*
185649538 A-AGTTGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
1 AGA-TCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
* * * * * *
185649582 AGATCGAATATAGCAGATCTGACATTCCTGTGCTTAGAGTGAAGC
1 AGATCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAA-C
** * *
185649627 AGATCGAAGATTTC-G-CATGCCATCCCTGTGCTTATAGGGAAC
1 AGATCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
* * * * *
185649669 A-AGTTGAAAATAGCAGATTTGGCATCCTTATGCTTATAGGGAAC
1 AGA-TCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
* * * * **
185649713 AGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTAAAGC
1 AGATCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAA-C
* ** *
185649758 AGATCAAAGATTTCAG-CATGGCATCCCTGTGCTTATAGGGAAC
1 AGATCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
* * *
185649801 A-AGTTGAATATAGCAGATTTGGCATCCCTGTGCTTATAGGGAAC
1 AGA-TCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
* * * * * *
185649845 AGATCGAAGATAGCAGATCTGACATTCATGTGCTTACAGTGAAGC
1 AGATCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAA-C
* ** * * *
185649890 AGATCAAAGATTTCAG-CATGGCATCCCTATGTTTATAGGGAAC
1 AGATCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
* * * * *
185649933 A-AGTTGAAGATAGCAGATTTGACATCCCTATGTTTATA-GGAAC
1 AGA-TCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
* * * *
185649976 A-AGTTGAAGACAGCAGATTTGGCATCCCTGTGTTTATAGGGAAC
1 AGA-TCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
185650020 AGATCGAAGA-AGCAGAT
1 AGATCGAAGATAGCAGAT
185650037 CGAAGAAGCA
Statistics
Matches: 427, Mismatches: 97, Indels: 37
0.76 0.17 0.07
Matches are distributed among these distances:
41 1 0.00
42 12 0.03
43 110 0.26
44 260 0.61
45 44 0.10
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (44 bp):
AGATCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
Found at i:185649843 original size:132 final size:132
Alignment explanation
Indices: 185649451--185650029 Score: 837
Period size: 132 Copynumber: 4.4 Consensus size: 132
185649441 GACGGGGGGT
* * * *
185649451 AGATCAAAGATAGCAGATATCG-CCTTCCTGAG-TTACAGTGAAGCAGATCAAAGATTTCAGCAT
1 AGATCGAAGATAGCAGATCT-GACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCAT
* *
185649514 GGCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGG
65 GGCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTATGCTTATAGGG
185649579 AAC
130 AAC
* * *
185649582 AGATCGAATATAGCAGATCTGACATTCCTGTGCTTAGAGTGAAGCAGATCGAAGATTTC-GCATG
1 AGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATG
* * *
185649646 CCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCTTATGCTTATAGGGA
66 GCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTATGCTTATAGGGA
185649711 AC
131 AC
*
185649713 AGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTAAAGCAGATCAAAGATTTCAGCATG
1 AGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATG
* *
185649778 GCATCCCTGTGCTTATAGGGAACAAGTTGAATATAGCAGATTTGGCATCCCTGTGCTTATAGGGA
66 GCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTATGCTTATAGGGA
185649843 AC
131 AC
*
185649845 AGATCGAAGATAGCAGATCTGACATTCATGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATG
1 AGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATG
* * * *
185649910 GCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGACATCCCTATGTTTATA-GGA
66 GCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTATGCTTATAGGGA
185649974 AC
131 AC
* * * * * * * * *
185649976 A-AGTTGAAGACAGCAGATTTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGA
1 AGA-TCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGA
185650030 AGCAGATCGA
Statistics
Matches: 406, Mismatches: 38, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
130 12 0.03
131 184 0.45
132 210 0.52
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (132 bp):
AGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATG
GCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTATGCTTATAGGGA
AC
Found at i:185649888 original size:263 final size:261
Alignment explanation
Indices: 185649451--185650009 Score: 852
Period size: 263 Copynumber: 2.1 Consensus size: 261
185649441 GACGGGGGGT
* * * *
185649451 AGATCAAAGATAGCAGATATCGCCTTCCTGAGTTACAGTGAAGCAGATCAAAGATTTCAGCATGG
1 AGATCGAAGATAGCAGATAT-GCATTCCTGTGTTACAGTAAAGCAGATCAAAGATTTCAGCATGG
185649516 CATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAA
65 CATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAA
* * * *
185649581 CAGATCGAATATAGCAGATCTGACATTCCTGTGCTTAGAGTGAAGCAGATCGAAGATTTC-GCAT
130 CAGATCGAAGATAGCAGATCTGACATTCATGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCAT
* * *
185649645 GCCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCTTATGCTTATAGGG
195 GCCATCCCTATGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGACATCCCTATGCTTATA-GG
185649710 AAC
259 AAC
*
185649713 AGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTAAAGCAGATCAAAGATTTCAGCATG
1 AGATCGAAGATAGCAGATATG-CATTCCTGTG-TTACAGTAAAGCAGATCAAAGATTTCAGCATG
* *
185649778 GCATCCCTGTGCTTATAGGGAACAAGTTGAATATAGCAGATTTGGCATCCCTGTGCTTATAGGGA
64 GCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGA
185649843 ACAGATCGAAGATAGCAGATCTGACATTCATGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCA
129 ACAGATCGAAGATAGCAGATCTGACATTCATGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCA
* * * *
185649908 TGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGACATCCCTATGTTTATAGG
194 TGCCATCCCTATGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGACATCCCTATGCTTATAGG
185649973 AAC
259 AAC
* * * *
185649976 A-AGTTGAAGACAGCAGATTTGGCATCCCTGTGTT
1 AGA-TCGAAGATAGCAGATAT-GCATTCCTGTGTT
185650010 TATAGGGAAC
Statistics
Matches: 270, Mismatches: 22, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
261 1 0.00
262 29 0.11
263 180 0.67
264 60 0.22
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (261 bp):
AGATCGAAGATAGCAGATATGCATTCCTGTGTTACAGTAAAGCAGATCAAAGATTTCAGCATGGC
ATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
AGATCGAAGATAGCAGATCTGACATTCATGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATG
CCATCCCTATGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGACATCCCTATGCTTATAGGAA
C
Found at i:185650037 original size:13 final size:13
Alignment explanation
Indices: 185650019--185650056 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
185650009 TTATAGGGAA
185650019 CAGATCGAAGAAG
1 CAGATCGAAGAAG
185650032 CAGATCGAAGAAG
1 CAGATCGAAGAAG
185650045 CAGATCGAAGAA
1 CAGATCGAAGAA
185650057 CTCAAAACTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.47, C:0.16, G:0.29, T:0.08
Consensus pattern (13 bp):
CAGATCGAAGAAG
Found at i:185650512 original size:22 final size:23
Alignment explanation
Indices: 185650487--185650532 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
185650477 GAGAGGGGGG
*
185650487 ATCGATGGTGTTTTGAGGA-AGA
1 ATCGATGGTATTTTGAGGAGAGA
* *
185650509 ATCGATTGTATTTTGGGGAGAGA
1 ATCGATGGTATTTTGAGGAGAGA
185650532 A
1 A
185650533 GAGATTGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.28, C:0.04, G:0.35, T:0.33
Consensus pattern (23 bp):
ATCGATGGTATTTTGAGGAGAGA
Found at i:185651267 original size:39 final size:40
Alignment explanation
Indices: 185651152--185651305 Score: 231
Period size: 39 Copynumber: 3.9 Consensus size: 40
185651142 ATAAAGTATG
*
185651152 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATG
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATA
* * *
185651192 GTTTTAATTAATGATAAAAATAAAATAATATGGGGGAATA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATA
*
185651232 GTTTTAATTAATAAT-AAAACAAAATAGTATGGGGGAGTA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATA
* *
185651271 GTTTTAATTAATAAT-AAAACAAAGTAGCATGGGGG
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGG
185651306 GAGTGGAATC
Statistics
Matches: 104, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 54 0.52
40 50 0.48
ACGTcount: A:0.47, C:0.03, G:0.20, T:0.31
Consensus pattern (40 bp):
GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATA
Found at i:185651307 original size:79 final size:80
Alignment explanation
Indices: 185651152--185651305 Score: 231
Period size: 79 Copynumber: 1.9 Consensus size: 80
185651142 ATAAAGTATG
* * *
185651152 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATGGTTTTAATTAATGATAAAAATAAAA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATAGTTTTAATTAATAATAAAAACAAAA
*
185651217 TAATATGGGGGAATA
66 TAACATGGGGGAATA
* *
185651232 GTTTTAATTAATAAT-AAAACAAAATAGTATGGGGGAGTAGTTTTAATTAATAAT-AAAACAAAG
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATAGTTTTAATTAATAATAAAAACAAAA
*
185651295 TAGCATGGGGG
66 TAACATGGGGG
185651306 GAGTGGAATC
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
78 16 0.24
79 36 0.54
80 15 0.22
ACGTcount: A:0.47, C:0.03, G:0.20, T:0.31
Consensus pattern (80 bp):
GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATAGTTTTAATTAATAATAAAAACAAAA
TAACATGGGGGAATA
Found at i:185653053 original size:107 final size:107
Alignment explanation
Indices: 185652911--185653123 Score: 399
Period size: 107 Copynumber: 2.0 Consensus size: 107
185652901 CCAATCACAC
*
185652911 CTAAAAAGATTGGTGACGACTCCCGTTTTCGTTTTTTAAAATCGATTCCCATTTTCCAAAACTCG
1 CTAAAAAGATTGGCGACGACTCCCGTTTTCGTTTTTTAAAATCGATTCCCATTTTCCAAAACTCG
185652976 ATATGAAAATGGTTTCGACACCTGCTATTCAAATTTTCTATA
66 ATATGAAAATGGTTTCGACACCTGCTATTCAAATTTTCTATA
* *
185653018 CTAAAAAGATTGGCGACGACTCCCGTTTTCGTTTTTTAAAATCGATTCCCATTTTCTAAAACTTG
1 CTAAAAAGATTGGCGACGACTCCCGTTTTCGTTTTTTAAAATCGATTCCCATTTTCCAAAACTCG
185653083 ATATGAAAATGGTTTCGACACCTGCTATTCAAATTTTCTAT
66 ATATGAAAATGGTTTCGACACCTGCTATTCAAATTTTCTAT
185653124 CTTTTTTATT
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
107 103 1.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (107 bp):
CTAAAAAGATTGGCGACGACTCCCGTTTTCGTTTTTTAAAATCGATTCCCATTTTCCAAAACTCG
ATATGAAAATGGTTTCGACACCTGCTATTCAAATTTTCTATA
Found at i:185656323 original size:17 final size:18
Alignment explanation
Indices: 185656281--185656329 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
185656271 AGTTGAAAAG
185656281 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
185656300 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
185656317 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
185656330 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:185657214 original size:40 final size:39
Alignment explanation
Indices: 185657148--185657313 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
185657138 AAATTGAATG
* * *
185657148 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGG-TATT
* * **
185657187 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
*
185657226 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-G-TATT
* * **
185657266 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT-ATT
185657306 ATATCCGG
1 ATATCCGG
185657314 TTATATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
Found at i:185664307 original size:17 final size:18
Alignment explanation
Indices: 185664265--185664313 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
185664255 AGTTGAAAAG
185664265 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
185664284 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
185664301 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
185664314 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:185665201 original size:40 final size:40
Alignment explanation
Indices: 185665135--185665301 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
185665125 AAATTGAATG
* * *
185665135 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
185665174 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
185665214 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
185665254 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
185665294 ATATCCGG
1 ATATCCGG
185665302 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:185667514 original size:21 final size:21
Alignment explanation
Indices: 185667480--185667535 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
185667470 ATCGTGAAAC
* *
185667480 AGGGCCACATGCCTGTGTGGA
1 AGGGCAACACGCCTGTGTGGA
185667501 AGGGCAACACGCCTGTGTGGA
1 AGGGCAACACGCCTGTGTGGA
185667522 AGGGCAACACGCCT
1 AGGGCAACACGCCT
185667536 TTGTAGCCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.23, C:0.27, G:0.36, T:0.14
Consensus pattern (21 bp):
AGGGCAACACGCCTGTGTGGA
Found at i:185669900 original size:39 final size:40
Alignment explanation
Indices: 185669799--185669975 Score: 211
Period size: 40 Copynumber: 4.5 Consensus size: 40
185669789 TCGAATGATG
* *
185669799 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
185669838 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
185669879 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
185669918 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
185669957 AACCGGGCTATGTCCCGAA
1 -TCCGGGCTAAGTCCCGAA
185669976 CATTTGAACG
Statistics
Matches: 119, Mismatches: 12, Indels: 12
0.83 0.08 0.08
Matches are distributed among these distances:
39 36 0.30
40 73 0.61
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:185669935 original size:79 final size:80
Alignment explanation
Indices: 185669799--185669975 Score: 227
Period size: 79 Copynumber: 2.2 Consensus size: 80
185669789 TCGAATGATG
* *
185669799 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
185669864 GTGCGAGTTACTAAT
66 GTGCGAGTTACTAAT
* * **
185669879 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
185669941 TTGTGCGAGTTACT-AT
64 TTGTGCGAGTTACTAAT
* *
185669957 AACCGGGCTATGTCCCGAA
1 -TCCGGGCTAAGTCCCGAA
185669976 CATTTGAACG
Statistics
Matches: 85, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
78 3 0.04
79 59 0.69
80 23 0.27
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAT
Found at i:185672429 original size:2 final size:2
Alignment explanation
Indices: 185672422--185672468 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
185672412 GTTGACATTG
185672422 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
185672464 TA TA T
1 TA TA T
185672469 TCGGCCCTTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:185672961 original size:28 final size:28
Alignment explanation
Indices: 185672892--185672992 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 28
185672882 GACAAGATTG
* * * *
185672892 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
185672922 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
185672950 GCACTAAGTGTGCGAG-CTGAATATATGTA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
185672979 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
185672993 GATTCACTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 19 0.30
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:185673003 original size:29 final size:28
Alignment explanation
Indices: 185672921--185673005 Score: 84
Period size: 29 Copynumber: 3.0 Consensus size: 28
185672911 AAAATTGTAC
* *
185672921 AGCACTAAGTGTGCGAGTTTGAT-TATAT
1 AGCACTAAGTGTGCG-GATTGATATATGT
*
185672949 AGCACTAAGTGTGC-GAGCTGAATATATGT
1 AGCACTAAGTGTGCGGA-TTG-ATATATGT
*
185672978 AGCACTAAGTGTGCGGATTCACTATATG
1 AGCACTAAGTGTGCGGATTGA-TATATG
185673006 CTCTTGCATT
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
26 1 0.02
27 2 0.04
28 17 0.36
29 25 0.53
30 2 0.04
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATGT
Found at i:185676845 original size:40 final size:40
Alignment explanation
Indices: 185676761--185676945 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
185676751 TCGAATGATG
* *
185676761 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
185676800 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
185676841 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
185676880 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
185676919 AACCGGGCTATGTCCCGAACGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
185676946 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 36 0.29
40 78 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:185676900 original size:79 final size:81
Alignment explanation
Indices: 185676761--185676943 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
185676751 TCGAATGATG
* * *
185676761 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCAAAGGCATT
185676825 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
185676840 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCAAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCAAAGGCA
185676902 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* * *
185676920 ACCGGGCTATGTCCCGAACGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
185676944 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 29 0.33
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCAAAGGCATT
TGTGCGAGTTACTATA
Found at i:185676967 original size:79 final size:79
Alignment explanation
Indices: 185676817--185676978 Score: 195
Period size: 79 Copynumber: 2.1 Consensus size: 79
185676807 CTAAGATCCG
* * **
185676817 AAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATC
1 AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAACGCATTGGAACGAGTTACTAAATC
*
185676882 CGGGTTAAGTCCCA
66 CGGGTTAAATCCCA
* * *
185676896 AAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAACGCATTTGAACGAG-TAGCTAT
1 AAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAACGCATTGGAACGAGTTA-CTAA
*
185676959 ATCC-GGTTAAATTCCA
63 ATCCGGGTTAAATCCCA
185676975 AAGG
1 AAGG
185676979 TACGTGATTC
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.65
80 23 0.32
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAACGCATTGGAACGAGTTACTAAATC
CGGGTTAAATCCCA
Found at i:185682081 original size:40 final size:40
Alignment explanation
Indices: 185682007--185682152 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
185681997 CCGCACCAAG
* * * * * *
185682007 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
185682047 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
185682087 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
185682127 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
185682153 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:185682167 original size:40 final size:40
Alignment explanation
Indices: 185682039--185682190 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
185682029 ATCACGATTT
* * * * *
185682039 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
185682079 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
185682119 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
185682159 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
185682191 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:185690272 original size:39 final size:40
Alignment explanation
Indices: 185690094--185690276 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
185690084 CCGCACCAAG
* * * * * * * *
185690094 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
185690134 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
185690174 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
185690214 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
185690253 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
185690277 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:185693049 original size:40 final size:40
Alignment explanation
Indices: 185692990--185693120 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 40
185692980 ACGGACTTTA
* * *
185692990 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
185693030 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
185693070 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
185693110 CCCGGATATAA
1 CCCGGATATAA
185693121 TTTCAGCATA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:185693153 original size:39 final size:40
Alignment explanation
Indices: 185693007--185693157 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
185692997 ATCACGATTT
* * * *
185693007 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
*
185693047 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
185693087 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-A
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
185693126 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
185693158 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 31 0.32
40 64 0.66
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
Found at i:185701114 original size:40 final size:40
Alignment explanation
Indices: 185701055--185701223 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
185701045 CGGGACTTTA
* * *
185701055 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
185701095 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
185701135 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
185701175 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
185701215 CCCGGATAT
1 CCCGGATAT
185701224 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:185706508 original size:38 final size:38
Alignment explanation
Indices: 185706466--185706633 Score: 185
Period size: 38 Copynumber: 4.4 Consensus size: 38
185706456 AAAGACTCGC
* *
185706466 AGGCTTTATGCTGGAATTATATCCAGGTTAAATCCCGT
1 AGGCTTCATGCTGGAATTATATCCGGGTTAAATCCCGT
* * *
185706504 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
1 AGGCTTCATGCTGGAATTATATCCGGGTTAAATCCCGT
*
185706542 AGGCTTCGTGCT-GATATTATATCCGGGTTAAATCCCGT
1 AGGCTTCATGCTGGA-ATTATATCCGGGTTAAATCCCGT
* * * * * *
185706580 AGGCCTAATGCTGGTATTATATCTGAGTCTAAAGACCCGT
1 AGGCTTCATGCTGGAATTATATCCGGGT-TAAA-TCCCGT
*
185706620 AGGCTTCGTGCTGG
1 AGGCTTCATGCTGG
185706634 TGTTATGTTC
Statistics
Matches: 109, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
37 1 0.01
38 87 0.80
39 5 0.05
40 16 0.15
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (38 bp):
AGGCTTCATGCTGGAATTATATCCGGGTTAAATCCCGT
Found at i:185706546 original size:76 final size:78
Alignment explanation
Indices: 185706445--185706632 Score: 222
Period size: 76 Copynumber: 2.4 Consensus size: 78
185706435 ATTTGATGTG
* * *
185706445 TATCCGGGCTTAAAGACTCGCAGGCTTTATGCTGGA-ATTATATCCAGGTTAAATCCCGTAGGCT
1 TATCCGGGCTTAAAGACCCGCAGGCTTCATGCT-GATATTATATCCAGGTTAAATCCCGTAGGCC
**
185706509 TCGTGCTGGTATTA
65 TAATGCTGGTATTA
* * *
185706523 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGATATTATATCCGGGTTAAATCCCGTAGGCCT
1 TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGATATTATATCCAGGTTAAATCCCGTAGGCCT
185706586 AATGCTGGTATTA
66 AATGCTGGTATTA
* * * *
185706599 TATCTGAG-TCTAAAGACCCGTAGGCTTCGTGCTG
1 TATCCGGGCT-TAAAGACCCGCAGGCTTCATGCTG
185706633 GTGTTATGTT
Statistics
Matches: 95, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
75 2 0.02
76 59 0.62
77 9 0.09
78 25 0.26
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (78 bp):
TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGATATTATATCCAGGTTAAATCCCGTAGGCCT
AATGCTGGTATTA
Found at i:185709548 original size:40 final size:40
Alignment explanation
Indices: 185709526--185709696 Score: 206
Period size: 40 Copynumber: 4.3 Consensus size: 40
185709516 TATGCTGGAA
* *
185709526 ATTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAG-T
1 ATTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGAT
** *
185709565 GGCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT
1 -ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT
*
185709606 ATTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT
1 ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT
* *
185709646 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACG-T
1 ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GAT
185709685 GATTATATCCGG
1 -ATTATATCCGG
185709697 TTATATTCCG
Statistics
Matches: 116, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
39 5 0.04
40 110 0.95
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT
Found at i:185711128 original size:21 final size:21
Alignment explanation
Indices: 185711096--185711145 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
185711086 ATATAATTGA
*
185711096 ATTTAACA-TCAATTTAATCC
1 ATTTCACACTCAATTTAATCC
*
185711116 ATTTCACACTCAATTTAATTC
1 ATTTCACACTCAATTTAATCC
*
185711137 AATTCACAC
1 ATTTCACAC
185711146 CCTAGGCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 7 0.27
21 19 0.73
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (21 bp):
ATTTCACACTCAATTTAATCC
Found at i:185715354 original size:2 final size:2
Alignment explanation
Indices: 185715347--185715374 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
185715337 TTGGCTGTCT
185715347 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
185715375 CCTTCGAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:185716156 original size:49 final size:49
Alignment explanation
Indices: 185716029--185716294 Score: 450
Period size: 49 Copynumber: 5.5 Consensus size: 49
185716019 CCCTTCGGGA
* *
185716029 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
185716076 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
185716123 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
185716172 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
185716221 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
185716270 CTTATCACATATATATACACTTTCA
1 CTTATCACATATATATACACTTTCA
185716295 TGTACAGACT
Statistics
Matches: 207, Mismatches: 8, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 49 0.24
49 157 0.76
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:185717600 original size:2 final size:2
Alignment explanation
Indices: 185717555--185717591 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
185717545 TAAGGCATAC
185717555 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
185717592 CCTATATATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:185721149 original size:26 final size:26
Alignment explanation
Indices: 185721120--185721175 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
185721110 TGATAAAAAT
185721120 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
185721146 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
185721172 TGAT
1 TGAT
185721176 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:185722695 original size:26 final size:26
Alignment explanation
Indices: 185722665--185722717 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
185722655 TTTATAGTTT
185722665 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
185722691 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
185722717 T
1 T
185722718 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:185729188 original size:26 final size:26
Alignment explanation
Indices: 185729159--185729241 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 26
185729149 TGATAAAAAT
185729159 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
185729185 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
185729211 TTATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
185729237 CGATA
1 TGATA
185729242 GGCATTTCAT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.31, C:0.08, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:185734614 original size:66 final size:68
Alignment explanation
Indices: 185734538--185734724 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
185734528 TAGTACCACT
*
185734538 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
185734600 CACG
65 CACG
185734604 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
185734669 ATCACG
63 ATCACG
185734675 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
185734725 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:185734649 original size:71 final size:71
Alignment explanation
Indices: 185734561--185734724 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
185734551 CGATTTGTCT
185734561 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
185734626 CTTTCA
66 CTTTCA
185734632 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
185734697 CTTTCA
66 CTTTCA
185734703 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
185734725 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:185734762 original size:71 final size:70
Alignment explanation
Indices: 185734561--185734758 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
185734551 CGATTTGTCT
* * *
185734561 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
185734626 CTTTCA
65 CTTTCA
* * *
185734632 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
185734697 CTTTCA
65 CTTTCA
* *
185734703 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
185734759 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:185742183 original size:66 final size:68
Alignment explanation
Indices: 185742107--185742293 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
185742097 TAGTACCACT
*
185742107 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
185742169 CACG
65 CACG
185742173 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
185742238 ATCACG
63 ATCACG
185742244 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
185742294 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:185742218 original size:71 final size:71
Alignment explanation
Indices: 185742130--185742293 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
185742120 CGATTTGTCT
185742130 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
185742195 CTTTCA
66 CTTTCA
185742201 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
185742266 CTTTCA
66 CTTTCA
185742272 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
185742294 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:185742331 original size:71 final size:70
Alignment explanation
Indices: 185742130--185742327 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
185742120 CGATTTGTCT
* * *
185742130 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
185742195 CTTTCA
65 CTTTCA
* * *
185742201 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
185742266 CTTTCA
65 CTTTCA
* *
185742272 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
185742328 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:185745218 original size:78 final size:78
Alignment explanation
Indices: 185744993--185745219 Score: 253
Period size: 78 Copynumber: 2.9 Consensus size: 78
185744983 ATTGAATGAT
* * ** * ** *
185744993 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTCGTTATATCCGGGCTAAGACCCGAAGGC-AT
*
185745058 T-GTGCTAGTGACTAC
64 TCGTGCTA-TGACTAA
* *
185745073 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTC
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTCGTTATATCCGGGCTAAGACCCGAAGGCATTC
*
185745138 GTGCGT-TG-TTAA
66 GTGC-TATGACTAA
* * *
185745150 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTCGTTATATCCGGGCTAAGACCCGAAGGCATT
185745215 CGTGC
65 CGTGC
185745220 ATGTGGTTAT
Statistics
Matches: 128, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
77 30 0.23
78 41 0.32
79 30 0.23
80 27 0.21
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (78 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTCGTTATATCCGGGCTAAGACCCGAAGGCATTC
GTGCTATGACTAA
Found at i:185745220 original size:40 final size:39
Alignment explanation
Indices: 185744991--185745235 Score: 262
Period size: 40 Copynumber: 6.2 Consensus size: 39
185744981 CAATTGAATG
* * ** * **
185744991 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTTGTT
* *
185745031 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAG-TGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTTG-TT
*
185745071 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTTGTT
*
185745110 AAATCCGGGCTAAGACCCGAAGGCATTCGTGC-GTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTTGTT
* * * *
185745148 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTTGTT
* *
185745188 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTTGTT
185745228 ATATCCGG
1 ATATCCGG
185745236 TTATTCCGAA
Statistics
Matches: 177, Mismatches: 21, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 36 0.20
39 38 0.21
40 100 0.56
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTTGTT
Found at i:185753003 original size:35 final size:35
Alignment explanation
Indices: 185752957--185753062 Score: 194
Period size: 35 Copynumber: 3.0 Consensus size: 35
185752947 CACTTGCCTC
185752957 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
185752992 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
* *
185753027 CTCCCACTCTCCCATGCTGTCTGCCGCCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
185753062 T
1 T
185753063 CACACACCCC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 68 1.00
ACGTcount: A:0.16, C:0.49, G:0.12, T:0.23
Consensus pattern (35 bp):
TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
Found at i:185753507 original size:33 final size:33
Alignment explanation
Indices: 185753465--185753539 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
185753455 AGAGGGGAAG
*
185753465 CAAAAAAAAAAATCCAGCAAAAAA-TTCCAGCA
1 CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
**
185753497 CCAAAAAAAAATTTCCAGAAAAAAATTTCCAGCA
1 -CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
185753531 -AAAAAAAAA
1 CAAAAAAAAA
185753540 CCAAAAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
32 9 0.24
33 21 0.55
34 8 0.21
ACGTcount: A:0.64, C:0.19, G:0.05, T:0.12
Consensus pattern (33 bp):
CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
Found at i:185753823 original size:11 final size:11
Alignment explanation
Indices: 185753798--185753846 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
185753788 CGACCGGATT
*
185753798 TCCCTTC-CCC
1 TCCCTTCTCTC
185753808 TCCCTTCTCTC
1 TCCCTTCTCTC
185753819 TCCCTTCTCTC
1 TCCCTTCTCTC
185753830 TTCCC-TCTCTC
1 -TCCCTTCTCTC
*
185753841 TTCCTT
1 TCCCTT
185753847 TTTTTTTTCC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
10 10 0.29
11 20 0.59
12 4 0.12
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (11 bp):
TCCCTTCTCTC
Found at i:185754433 original size:2 final size:2
Alignment explanation
Indices: 185754361--185754417 Score: 57
Period size: 2 Copynumber: 30.0 Consensus size: 2
185754351 ATCATTTCTA
* * *
185754361 AT AT GT AT AT AT AT AT AT AT AT AT -T AT GT GT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
185754401 AT AT AT -T AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT
185754418 GCCATTAGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
1 3 0.07
2 43 0.93
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (2 bp):
AT
Found at i:185775944 original size:20 final size:21
Alignment explanation
Indices: 185775921--185775960 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
185775911 ATTATTCATA
*
185775921 ATTTGA-CTCCACTATTTACG
1 ATTTGACCCCCACTATTTACG
185775941 ATTTGATCCCCCACTATTTA
1 ATTTGA-CCCCCACTATTTA
185775961 TAGGACTGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
22 11 0.65
ACGTcount: A:0.25, C:0.28, G:0.07, T:0.40
Consensus pattern (21 bp):
ATTTGACCCCCACTATTTACG
Found at i:185778060 original size:22 final size:24
Alignment explanation
Indices: 185778018--185778076 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 24
185778008 AGAATTGAAT
*
185778018 TATAATTTT-TTAAAAAGTTAA-A
1 TATAATTTTATTATAAAGTTAATA
* *
185778040 TATAATTTTATTATATA-TTAATT
1 TATAATTTTATTATAAAGTTAATA
*
185778063 TATGATTTTATTAT
1 TATAATTTTATTAT
185778077 GTTCGAAGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
22 13 0.42
23 18 0.58
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (24 bp):
TATAATTTTATTATAAAGTTAATA
Found at i:185781797 original size:31 final size:31
Alignment explanation
Indices: 185781762--185781829 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
185781752 TCCCTATTTT
* *
185781762 GGAGAAAAAGAAACCTGAAACTCTATAACTA
1 GGAGAAAAAGAAACCCGAAACTCCATAACTA
** *
185781793 GGAG-AAACTAAACCCGAAACTCCATAGCTA
1 GGAGAAAAAGAAACCCGAAACTCCATAACTA
185781823 GGAGAAA
1 GGAGAAA
185781830 CTAAGGTTTG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 25 0.81
31 6 0.19
ACGTcount: A:0.49, C:0.19, G:0.19, T:0.13
Consensus pattern (31 bp):
GGAGAAAAAGAAACCCGAAACTCCATAACTA
Found at i:185781812 original size:30 final size:30
Alignment explanation
Indices: 185781772--185781833 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
185781762 GGAGAAAAAG
* *
185781772 AAACCTGAAACTCTATAACTAGGAGAAACT
1 AAACCCGAAACTCCATAACTAGGAGAAACT
*
185781802 AAACCCGAAACTCCATAGCTAGGAGAAACT
1 AAACCCGAAACTCCATAACTAGGAGAAACT
185781832 AA
1 AA
185781834 GGTTTGGTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.47, C:0.23, G:0.15, T:0.16
Consensus pattern (30 bp):
AAACCCGAAACTCCATAACTAGGAGAAACT
Found at i:185790447 original size:2 final size:2
Alignment explanation
Indices: 185790442--185790470 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
185790432 TTACACACAC
185790442 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
185790471 ATAGTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:185791621 original size:42 final size:42
Alignment explanation
Indices: 185791575--185791670 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
185791565 AGAAGCAGAA
**
185791575 TTTGAGTTGGTGTATTTGTAAAAGGCCTTAGG-CCTAGCAGGC
1 TTTGAGTCAGTGTATTTGTAAAAGGCCTT-GGCCCTAGCAGGC
* ** *
185791617 TTTGAGCCAGTGTATTTGTATTAGGCCTTGGCCCTAGCAGGT
1 TTTGAGTCAGTGTATTTGTAAAAGGCCTTGGCCCTAGCAGGC
185791659 TTTGAGTCAGTG
1 TTTGAGTCAGTG
185791671 AATAATTATA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
41 2 0.04
42 44 0.96
ACGTcount: A:0.19, C:0.16, G:0.30, T:0.35
Consensus pattern (42 bp):
TTTGAGTCAGTGTATTTGTAAAAGGCCTTGGCCCTAGCAGGC
Found at i:185807023 original size:40 final size:40
Alignment explanation
Indices: 185806968--185807147 Score: 307
Period size: 40 Copynumber: 4.6 Consensus size: 40
185806958 CGGATGATAA
185806968 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
185807008 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
185807048 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
**
185807087 CCGGGCTAAGTCCCGAAGGCATTTGT----GTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
185807123 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
185807148 AGCGTATATA
Statistics
Matches: 137, Mismatches: 2, Indels: 6
0.94 0.01 0.04
Matches are distributed among these distances:
35 7 0.05
36 25 0.18
39 28 0.20
40 77 0.56
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:185815311 original size:39 final size:40
Alignment explanation
Indices: 185815150--185815364 Score: 308
Period size: 40 Copynumber: 5.4 Consensus size: 40
185815140 GATGATAACT
185815150 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCC
* *
185815190 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATTTCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCC
185815230 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCC
* * **
185815270 GGGCTAAGTCCTGAAGGCAATTGTG-GAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCC
* * * *
185815309 GGGCTAAGTCCCGAAGGCATTTGAGCGGGTAACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCC
**
185815349 -GGCTAAACCCCGAAGG
1 GGGCTAAGTCCCGAAGG
185815365 TACTTGGTTG
Statistics
Matches: 158, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 48 0.30
40 110 0.70
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCC
Found at i:185817347 original size:20 final size:20
Alignment explanation
Indices: 185817322--185817400 Score: 90
Period size: 20 Copynumber: 4.0 Consensus size: 20
185817312 GATGCATAAC
* *
185817322 AGAGGCATCGAAGTGCAAAT
1 AGAGGCACCAAAGTGCAAAT
185817342 AGAGGCA-CAAATGTG-AAAT
1 AGAGGCACCAAA-GTGCAAAT
* *
185817361 CAAAGGCACCGAAGTGCAAAT
1 -AGAGGCACCAAAGTGCAAAT
185817382 AGAGGCACCAAAGTGCAAA
1 AGAGGCACCAAAGTGCAAA
185817401 CCCGTACAAG
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
19 7 0.14
20 36 0.72
21 7 0.14
ACGTcount: A:0.44, C:0.18, G:0.27, T:0.11
Consensus pattern (20 bp):
AGAGGCACCAAAGTGCAAAT
Found at i:185821057 original size:49 final size:50
Alignment explanation
Indices: 185820935--185821066 Score: 153
Period size: 49 Copynumber: 2.7 Consensus size: 50
185820925 TATGAGATGT
* * * *
185820935 GTCAGTATAAGACCATGTCTAGGACATGGCATCAGCAAGAATATGTAAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCAACAAGAATATGCAAGA
* ** *
185820985 G-CTAGTGTAAGACCATGTTTGGGACATGGCATCAACTTCGAAT-T-CAATA
1 GTC-AGTGTAAGACCATGTCTGGGACATGGCATCAAC-AAGAATATGCAAGA
185821034 GTCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATC
185821067 GGCATTATAC
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
49 34 0.49
50 32 0.46
51 4 0.06
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (50 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCAACAAGAATATGCAAGA
Found at i:185827003 original size:97 final size:94
Alignment explanation
Indices: 185826831--185827003 Score: 215
Period size: 97 Copynumber: 1.8 Consensus size: 94
185826821 ATGAAATGCC
* * *
185826831 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTCAGTATAAGACTATGTCTAGGA
1 AGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGAGACAGTATAAGACTATGTCTAGGA
* *
185826896 CATGGTATCGGCACGGATATGTGAGAGCT
66 CATAGCATCGGCACGGATATGTGAGAGCT
* *
185826925 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTAATG-GATGAGACAGTGTAAGA-TCATGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-T-ACGAGATGAGACAGTATAAGACT-ATGTC
*
185826988 TGGGACATAGCATCGG
61 TAGGACATAGCATCGG
185827004 TATTATACCC
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
94 9 0.14
95 14 0.21
96 8 0.12
97 33 0.50
98 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGAGACAGTATAAGACTATGTCTAGGA
CATAGCATCGGCACGGATATGTGAGAGCT
Found at i:185828646 original size:11 final size:11
Alignment explanation
Indices: 185828630--185828657 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
185828620 ATGTTTTGTT
185828630 GGTGAATCATG
1 GGTGAATCATG
185828641 GGTGAATCATG
1 GGTGAATCATG
185828652 GGTGAA
1 GGTGAA
185828658 AAAAGAACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.07, G:0.39, T:0.25
Consensus pattern (11 bp):
GGTGAATCATG
Found at i:185831450 original size:79 final size:82
Alignment explanation
Indices: 185831310--185831494 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
185831300 TCGAATGATG
* * *
185831310 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
185831374 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
185831390 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
185831452 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
185831470 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
185831495 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:185831502 original size:40 final size:40
Alignment explanation
Indices: 185831311--185831502 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
185831301 CGAATGATGT
* * * * *
185831311 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
185831351 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
185831391 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
185831430 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
185831470 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
185831503 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:185839444 original size:39 final size:40
Alignment explanation
Indices: 185839344--185839490 Score: 158
Period size: 39 Copynumber: 3.7 Consensus size: 40
185839334 TCGAATGATG
* * * *
185839344 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTAATAAA
* * *
185839384 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTAATAAA
*
185839424 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTT-ATAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTAATAAA
* *
185839462 CCCGGGTTAAGTCCCGAAGGCATTCGTGC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC
185839491 GAGTCACTAA
Statistics
Matches: 89, Mismatches: 14, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
38 14 0.16
39 35 0.39
40 33 0.37
41 7 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTAATAAA
Found at i:185839492 original size:78 final size:80
Alignment explanation
Indices: 185839344--185839494 Score: 202
Period size: 78 Copynumber: 1.9 Consensus size: 80
185839334 TCGAATGATG
* * *
185839344 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
185839409 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
185839424 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTA-TAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
185839485 TCGTGCGAGT
64 TCGTGCGAGT
185839495 CACTAATAAC
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
77 1 0.02
78 30 0.48
79 14 0.22
80 18 0.29
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:185839516 original size:39 final size:37
Alignment explanation
Indices: 185839397--185839534 Score: 123
Period size: 39 Copynumber: 3.6 Consensus size: 37
185839387 GGACTAGGAT
* * * *
185839397 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGC
1 CCGAAGGCATTCGTGCGAG-TCATAAAACCGGG-TTATC
* * * *
185839436 CCGAAGGCATTTGTGCAAGTTATAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTCATAAAACCGGGTT-A-TC
*
185839475 CCGAAGGCATTCGTGCGAGTCACTAATAACCGGGTTCTC
1 CCGAAGGCATTCGTGCGAGTCA-TAA-AACCGGGTTATC
* *
185839514 CCGAAGGCATTTGAGCGAGTC
1 CCGAAGGCATTCGTGCGAGTC
185839535 GTATATCCGG
Statistics
Matches: 82, Mismatches: 13, Indels: 8
0.80 0.13 0.08
Matches are distributed among these distances:
37 1 0.01
38 12 0.15
39 58 0.71
40 3 0.04
41 8 0.10
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (37 bp):
CCGAAGGCATTCGTGCGAGTCATAAAACCGGGTTATC
Found at i:185842756 original size:37 final size:36
Alignment explanation
Indices: 185842706--185842792 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
185842696 TACGAAGTCT
185842706 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
185842742 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
185842779 TCACCCGGAACATA
1 T-ACCCGG-ACATA
185842793 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:185843054 original size:47 final size:49
Alignment explanation
Indices: 185842841--185843087 Score: 365
Period size: 49 Copynumber: 5.1 Consensus size: 49
185842831 ATTCACATTA
* * * * * *
185842841 GCCATTCGGCTTTACCACATATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATAT--ACTTTCGCATTCACCACATCG
* *
185842892 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATATACTTTCGCATTCACCACATCG
*
185842941 GCCATTAGGCCTCATCACATATACATATACTTTCGCATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATATACTTTCGCATTCACCACATCG
*
185842990 GCCATTAGGCCTCATCACATATACATATACTTTCGCATTCA-C-CATCG
1 GCCATTAGGCCTTATCACATATACATATACTTTCGCATTCACCACATCG
185843037 GCCATTAGGCCTTATCACATATACATATACTTTCGCATTCA-CACATCG
1 GCCATTAGGCCTTATCACATATACATATACTTTCGCATTCACCACATCG
185843085 GCC
1 GCC
185843088 TAATTATACT
Statistics
Matches: 185, Mismatches: 10, Indels: 5
0.93 0.05 0.03
Matches are distributed among these distances:
47 46 0.25
48 9 0.05
49 107 0.58
51 23 0.12
ACGTcount: A:0.29, C:0.32, G:0.10, T:0.30
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATATACTTTCGCATTCACCACATCG
Found at i:185843124 original size:125 final size:135
Alignment explanation
Indices: 185842841--185843338 Score: 568
Period size: 125 Copynumber: 3.6 Consensus size: 135
185842831 ATTCACATTA
* * * * *
185842841 GCCATTCGGCTTTACCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 GCCATTAGGCCTTATCACATATACATAT--ACTTTCGCATTCA-C-CATCGGCCATTAGGCCTTA
*
185842906 TCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATATAC
62 TCACATATACATACACTTTCGCATTCA-C-CA----CCATTAGGCCTCATCAC--AT--ATATAC
185842971 TTTCGCATTCACCACATCG
117 TTTCGCATTCACCACATCG
*
185842990 GCCATTAGGCCTCATCACATATACATATACTTTCGCATTCACCATCGGCCATTAGGCCTTATCAC
1 GCCATTAGGCCTTATCACATATACATATACTTTCGCATTCACCATCGGCCATTAGGCCTTATCAC
* *
185843055 ATATACATATACTTTCGCATTCA-CA-CA-TCGG-C-C-T-A-AT-TATACTTTCGCATTCA-CA
66 ATATACATACACTTTCGCATTCACCACCATTAGGCCTCATCACATATATACTTTCGCATTCACCA
185843110 CATCG
131 CATCG
185843115 GCCATTAGGCCTTATCACATATACATATACTTTCGCATTCACCATCGGCCATTAGGCCTTATCAC
1 GCCATTAGGCCTTATCACATATACATATACTTTCGCATTCACCATCGGCCATTAGGCCTTATCAC
*
185843180 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCACATATATACATTTCGCA
66 ATATACATACACTTTCGCATTCA-C-CA----CCATTAGGCCTCATCACATATATAC-TTTCGCA
*
185843245 TTCATCACATCG
124 TTCACCACATCG
* * * *
185843257 GCCATTAGGCCTTATCACATATACATACATTTTCGCATTCATCGCATCGACCATTAGGCCTCATC
1 GCCATTAGGCCTTATCACATATACATATACTTTCGCATTCA-C-CATCGGCCATTAGGCCTTATC
*
185843322 ACATATATATACA-TTTC
64 ACATATACATACACTTTC
185843339 CACGAATCTT
Statistics
Matches: 312, Mismatches: 18, Indels: 44
0.83 0.05 0.12
Matches are distributed among these distances:
125 92 0.29
126 16 0.05
128 2 0.01
129 2 0.01
132 1 0.00
133 3 0.01
134 4 0.01
135 2 0.01
136 4 0.01
137 3 0.01
138 1 0.00
139 2 0.01
140 5 0.02
141 11 0.04
142 48 0.15
143 5 0.02
144 31 0.10
145 44 0.14
146 1 0.00
147 12 0.04
149 23 0.07
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.31
Consensus pattern (135 bp):
GCCATTAGGCCTTATCACATATACATATACTTTCGCATTCACCATCGGCCATTAGGCCTTATCAC
ATATACATACACTTTCGCATTCACCACCATTAGGCCTCATCACATATATACTTTCGCATTCACCA
CATCG
Found at i:185843143 original size:78 final size:76
Alignment explanation
Indices: 185843015--185843164 Score: 282
Period size: 78 Copynumber: 1.9 Consensus size: 76
185843005 CACATATACA
185843015 TATACTTTCGCATTCACCATCGGCCATTAGGCCTTATCACATATACATATACTTTCGCATTCACA
1 TATACTTTCGCATTCACCATCGGCCATTAGGCCTTATCACATATACATATACTTTCGCATTCAC-
185843080 CATCGGCCTAAT
65 CATCGGCCTAAT
185843092 TATACTTTCGCATTCACACATCGGCCATTAGGCCTTATCACATATACATATACTTTCGCATTCAC
1 TATACTTTCGCATTCAC-CATCGGCCATTAGGCCTTATCACATATACATATACTTTCGCATTCAC
185843157 CATCGGCC
65 CATCGGCC
185843165 ATTAGGCCTT
Statistics
Matches: 72, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
77 25 0.35
78 47 0.65
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.32
Consensus pattern (76 bp):
TATACTTTCGCATTCACCATCGGCCATTAGGCCTTATCACATATACATATACTTTCGCATTCACC
ATCGGCCTAAT
Found at i:185843229 original size:49 final size:49
Alignment explanation
Indices: 185843097--185843337 Score: 368
Period size: 49 Copynumber: 5.0 Consensus size: 49
185843087 CTAATTATAC
* *
185843097 TTTCGCATTCA-CACATCGGCCATTAGGCCTTATCACATATACATATAC
1 TTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATACATACAT
185843145 TTTCGCATTCA-C-CATCGGCCATTAGGCCTTATCACATATACATACAT
1 TTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATACATACAT
* *
185843192 TTTCGCATTCATCGCATCGGCCATTAGGCCTCATCACATAT--ATACA-
1 TTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATACATACAT
185843238 TTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATACATACAT
1 TTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATACATACAT
* * * *
185843287 TTTCGCATTCATCGCATCGACCATTAGGCCTCATCACATATATATACAT
1 TTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATACATACAT
185843336 TT
1 TT
185843338 CCACGAATCT
Statistics
Matches: 179, Mismatches: 9, Indels: 9
0.91 0.05 0.05
Matches are distributed among these distances:
46 39 0.22
47 49 0.27
48 18 0.10
49 73 0.41
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (49 bp):
TTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATACATACAT
Found at i:185843267 original size:95 final size:94
Alignment explanation
Indices: 185843097--185843330 Score: 382
Period size: 95 Copynumber: 2.5 Consensus size: 94
185843087 CTAATTATAC
* * *
185843097 TTTCGCATTCA-CACATCGGCCATTAGGCCTTATCACATATACATATACTTTCGCATTCACCATC
1 TTTCGCATTCATCGCATCGGCCATTAGGCCTCATCACATAT--ATACACTTTCGCATTCACCATC
185843161 GGCCATTAGGCCTTATCACATATACATACAT
64 GGCCATTAGGCCTTATCACATATACATACAT
185843192 TTTCGCATTCATCGCATCGGCCATTAGGCCTCATCACATATATACA-TTTCGCATTCATCACATC
1 TTTCGCATTCATCGCATCGGCCATTAGGCCTCATCACATATATACACTTTCGCATTCA-C-CATC
185843256 GGCCATTAGGCCTTATCACATATACATACAT
64 GGCCATTAGGCCTTATCACATATACATACAT
*
185843287 TTTCGCATTCATCGCATCGACCATTAGGCCTCATCACATATATA
1 TTTCGCATTCATCGCATCGGCCATTAGGCCTCATCACATATATA
185843331 TACATTTCCA
Statistics
Matches: 132, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
93 11 0.08
94 5 0.04
95 89 0.67
96 27 0.20
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (94 bp):
TTTCGCATTCATCGCATCGGCCATTAGGCCTCATCACATATATACACTTTCGCATTCACCATCGG
CCATTAGGCCTTATCACATATACATACAT
Found at i:185843382 original size:142 final size:138
Alignment explanation
Indices: 185843092--185843346 Score: 359
Period size: 142 Copynumber: 1.8 Consensus size: 138
185843082 TCGGCCTAAT
*
185843092 TATAC-TTTCGCATTCACACATCGGCCATTAGGCCTTATCACATATACATATACTTTCGCATTCA
1 TATACATTTCGCATTCACACATCGGCCATTAGGCCTTATCACATATACATACACTTTCGCATTCA
* * * * *
185843156 CCATCGGCCATTAGGCCTTATCACATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGC
66 CCATCGACCATTAGGCCTCATCACATATACATACATTTCCACAATCATCGCATCGGCCATTA---
*
185843221 CTCATCACATA
128 CACATCACATA
*
185843232 TATACATTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATACATACATTTTCGCATTC
1 TATACATTTCGCATTCA-CACATCGGCCATTAGGCCTTATCACATATACATACACTTTCGCATTC
*
185843297 ATCGCATCGACCATTAGGCCTCATCACATATATATACATTTCCACGAATC
65 A-C-CATCGACCATTAGGCCTCATCACATATACATACATTTCCAC-AATC
185843347 TTTATCAGAG
Statistics
Matches: 102, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
140 5 0.05
141 11 0.11
142 46 0.45
143 1 0.01
144 36 0.35
145 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (138 bp):
TATACATTTCGCATTCACACATCGGCCATTAGGCCTTATCACATATACATACACTTTCGCATTCA
CCATCGACCATTAGGCCTCATCACATATACATACATTTCCACAATCATCGCATCGGCCATTACAC
ATCACATA
Found at i:185847220 original size:40 final size:40
Alignment explanation
Indices: 185847176--185847358 Score: 307
Period size: 40 Copynumber: 4.6 Consensus size: 40
185847166 CCAGCATGAT
* * * *
185847176 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
185847216 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
185847256 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCA-GAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
185847295 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
185847335 TGCTCTTCGGAACTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATA
185847359 AACCACAAGC
Statistics
Matches: 136, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 45 0.33
40 91 0.67
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:185847313 original size:79 final size:79
Alignment explanation
Indices: 185847176--185847358 Score: 305
Period size: 79 Copynumber: 2.3 Consensus size: 79
185847166 CCAGCATGAT
* * *
185847176 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAG-CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
185847241 CATCACTAGCACGAA
65 CATCACTAGCACGAA
*
185847256 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCA-GAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAG-CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
185847320 CATCACTAGCACGAA
65 CATCACTAGCACGAA
185847335 TGCTCTTCGGAACTTAGCCGGATA
1 TGCTCTTCGGAACTTAGCCGGATA
185847359 AACCACAAGC
Statistics
Matches: 97, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
78 7 0.07
79 59 0.61
80 31 0.32
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
TGCTCTTCGGAACTTAGCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATAC
ATCACTAGCACGAA
Found at i:185847416 original size:119 final size:118
Alignment explanation
Indices: 185847176--185847471 Score: 318
Period size: 119 Copynumber: 2.5 Consensus size: 118
185847166 CCAGCATGAT
* *
185847176 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG-CCGGATA
* * * **
185847241 CATCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATACATCACTAGCAGAA
65 AACCACAAGCACGAATGCTCCTCGGAACTTAACCCGGATACATCACTAGCAGAA
* *
185847295 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCGGATAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCGGATAA
* **
185847360 ACCACAAGCAC-AATTGC-CTTCGGGTCTTAACCCGGGTATAACAACTCAC-A-CA-AA
66 ACCACAAGCACGAA-TGCTCCTCGGAACTTAACCC-GG-AT-AC-A-TCACTAGCAGAA
* * ** *
185847414 TGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAAATGC-CTTCGGGACTTAGCC
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATGCTCTTCGGAACTTAGCC
185847472 CGGGTATCAT
Statistics
Matches: 151, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
117 13 0.09
118 54 0.36
119 74 0.49
120 4 0.03
121 2 0.01
122 4 0.03
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (118 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCGGATAA
ACCACAAGCACGAATGCTCCTCGGAACTTAACCCGGATACATCACTAGCAGAA
Found at i:185847418 original size:40 final size:40
Alignment explanation
Indices: 185847204--185847478 Score: 154
Period size: 40 Copynumber: 6.9 Consensus size: 40
185847194 CCGGATGCAT
* ** * * *
185847204 CACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACAT-
1 CACTAGCACAAATGC-CTTCGGGTCTTAGCCCGGGTATATA
* * ** * * *
185847244 CACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATACAT-
1 CACTAGCACAAATGC-CTTCGGGTCTTAGCCCGGGTATATA
* ** * * *
185847284 CACTAGCA-GAATGCTCTTCGGAACTTAGTCCGGATACAT-
1 CACTAGCACAAATGC-CTTCGGGTCTTAGCCCGGGTATATA
* ** *
185847323 CACTAGCACGAATGCTCTTCGGAACTTAG-CC-GG-ATAAA
1 CACTAGCACAAATGC-CTTCGGGTCTTAGCCCGGGTATATA
* * *
185847361 CCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATA-A
1 -CACTAGCACAAATGCCTTCGGGTCTTAGCCCGGGTATATA
* *
185847401 CAACTCA-CACAAATGCCTTCGGGTCTTAGCCCGGATATATT
1 C-ACT-AGCACAAATGCCTTCGGGTCTTAGCCCGGGTATATA
* *
185847442 CACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
1 CACTAGCACAAATGCCTTCGGGTCTTAGCCCGGGTAT
185847479 CATTCAAATG
Statistics
Matches: 206, Mismatches: 19, Indels: 20
0.84 0.08 0.08
Matches are distributed among these distances:
37 2 0.01
38 11 0.05
39 56 0.27
40 132 0.64
41 5 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CACTAGCACAAATGCCTTCGGGTCTTAGCCCGGGTATATA
Done.