Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 596 of 770
Found at i:186546841 original size:58 final size:57
Alignment explanation
Indices: 186546741--186546872 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
186546731 GTGACGAGAT
* * * * * *
186546741 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
186546799 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
186546856 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
186546873 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:186551438 original size:533 final size:541
Alignment explanation
Indices: 186549916--186556516 Score: 11354
Period size: 532 Copynumber: 12.4 Consensus size: 541
186549906 NNNNNNNNNN
*
186549916 ATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
1 ATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
*
186549981 GG-CTAATTTGTAAAAGTTATAAAATTTGCCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
66 GGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
*
186550045 TCTAGTTATGAAAGTGGTTCGGCTTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTAC
131 TATAGTTATGAAAGTGGTTCGGC-TAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTAC
* ** * *
186550110 AATCCTAGCTTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATTTAATTTTTGCCGTAGTA
195 AAGCCTAGGGTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTA
* *
186550175 TGATAAAA-TTAGTAATT-AATGTTTAAATAAACAAAATAGAAGTCAAATTTTGGTCATCTTCAA
260 TGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAA
186550238 CCCCTCGGCCGAAA-TTTGAAGACCACCATGGCTAGGGTTTT-TTTAAGCTTTCCAAGCTCCATA
325 CCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATA
* * *
186550301 GTAAGTTCGTTCTTGCCCCGTTTTTAATGATTTTCACATTCTTGAAATCCTTGTAACATGATCTA
390 GTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTA
*
186550366 CC-ATTTCTACCATTTATTTGAATTATGATGAAGGTCTAGGGTTTG-ACCATGTTATAAATTTGT
455 CCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGT
186550429 GTATTTTGATGTTTAATGGTAG
520 GTATTTTGATGTTTAATGGTAG
186550451 ATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCT-AAAA
1 ATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
* *
186550515 GGACTAATTTGCAAAAGTTATAAATTTTGTCAT--AAGTGTGATTTAGTGGAAATTGT-GG-TTT
66 GGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
* * * *
186550576 TATAGTTATGAAAGTGGATCGGCTAGGCTTAAATTGAAAATAAATTGAAAGAAAATTATTTTAAA
131 TATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACA
* **
186550641 AGCTTA-GGTAAAAGTGTAAATATCATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTAT
196 AGCCTAGGGTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTAT
186550704 GATAAAATTTAGTAATTAAATGTTTAAATAAAC-AAATAAAAGCCAAATTTTGGTCATCTTCAAC
261 GATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAAC
186550768 CCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGG-TTTGTTTAAGCTTTCCAAGCTCCATAG
326 CCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAG
*
186550832 TAAGTCTGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTAC
391 TAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTAC
* *
186550897 CTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTA-GGTTTGAACTATGTTATAAATTTGTG
456 CTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTG
186550961 TATTTTGATGTTTAATGGTAG
521 TATTTTGATGTTTAATGGTAG
186550982 ATTATGCATGTTTATGGTT-GAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
1 ATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
186551046 GGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGT-GAAATTGTGGG-TTT
66 GGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
*
186551109 T-TAGTTATGAAAGTGGTTCGGCTCGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACA
131 TATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACA
* * *
186551173 AGCCTAGGGTAAAAGTGTAAATAAGATAAAATTTA-GGGCATAAATTTAATTTTTACCATAGTAT
196 AGCCTAGGGTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTAT
*
186551237 GATAAAA-TTAGTAATTACATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAAC
261 GATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAAC
186551301 CCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAG
326 CCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAG
186551366 TAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTAC
391 TAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTAC
186551431 C-ATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTG-ACCATGTTATAAATTTGTG
456 CTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTG
186551494 TATTTTGATGTTTAATGGTAG
521 TATTTTGATGTTTAATGGTAG
186551515 ATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
1 ATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
186551580 GGACTAATTTGTAAAAGTTAT-AAATTTGTCAT-AAAGTGTGATTTAGTGGAAATTGTGGGTTTT
66 GGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
186551643 TATAGTTATGAAAGTGGTTCGGCTAGGCTTAAA-TGAAAATAAATTGAATGAAAATTATTTTA-A
131 TATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACA
* *
186551706 AACCTAGGGTAAAAGTGTAAATATGAT-AAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTAT
196 AGCCTAGGGTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTAT
186551770 GATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAA-
261 GATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAAC
186551834 CCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGG-TTTGTTTAAGCTTTCCAAGCTCCATAG
326 CCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAG
*
186551898 TAAGTCTGTTCTTGCCCC-TTTTTAATGA-TTTCACGTTTTTGAAATCCTT-TAACATGATCTAC
391 TAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTAC
* *
186551960 CTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACTATGTTATAAATTTGTG
456 CTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTG
186552025 TATTTTGATGTTTAATGGTAG
521 TATTTTGATGTTTAATGGTAG
186552046 ATTATGCATGTTTATGGTT-GAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
1 ATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
186552110 GGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
66 GGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
186552175 TATAGTTATGAAAGTGGTTC-GCTAGGCTTAAAGTG-AAATAAATTGAATGAAAATTATTTTACA
131 TATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACA
* * * *
186552238 ATCCTA-GCTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAAT-TAATTTTTGACGTAGTAT
196 AGCCTAGGGTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTAT
186552301 GAT-AAATTTAGTAATTAAATG-TTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAAC
261 GATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAAC
186552364 CCCTCGGCCGAAA-TTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAG
326 CCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAG
* * * *
186552428 TAAGTTCGTTCTTGCCCCGATTTTAATGATTTTCACATTCTTGAAATCCTTGTAACATGATCTAC
391 TAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTAC
* *
186552493 TCT-TTTCT-CCATTTATTTGACTTATGATGAAGGTCTAGGGTTTGATCCATGTTATAAATTTGT
456 -CTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGT
186552556 GTATTTTGATGTTTAATGGTAG
520 GTATTTTGATGTTTAATGGTAG
186552578 ATTATGCATGTTTATGGTT-GAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
1 ATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
186552642 GGACTAATTTGTAAAAGTTATAAAATTTGTC-TAAAAGTGTGATTTAGTGGAAATTGTGGG-TTT
66 GGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
* *
186552705 TATAGTTATGAAAGTGGTTCTGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACA
131 TATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACA
* *
186552770 A--CT-TGCTAAAAGTGTAAAT-AGATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTAT
196 AGCCTAGGGTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTAT
*
186552830 GATAAAATTTAGTAGTTAAATGTTTAAATAAAC-AAATAAAAG-CAAATTTTGGTCATCTTCAAC
261 GATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAAC
*
186552893 CCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAG
326 CCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAG
186552958 TAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTAC
391 TAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTAC
186553023 CTATTTCTACCATTTATTTGAGTTATGATGAAGGT-TAGGGTTTGAACCATGTTATAAATTTGTG
456 CTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTG
186553087 TATTTTGATGTTTAATGGTAG
521 TATTTTGATGTTTAATGGTAG
186553108 ATTATGCATGTTTATGGTT-GAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
1 ATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
*
186553172 GGACTAATTTGTAAAACTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
66 GGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
* *
186553237 TATAGTTATGAAAGTGGTTCTGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACA
131 TATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACA
* * * * *
186553302 A-TCT-TGCTAAAAGTGTAAATAA-A-AAAATTTAGGGGCAAAAAT-TAATTTTTTCCGTAGTAT
196 AGCCTAGGGTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTAT
186553362 GATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAAC
261 GATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAAC
186553427 CCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAG
326 CCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAG
* * *
186553492 TAAGTTCGTTCTTGCCCCGTTTTTAATGATTTTCACATTCTTGAAATCCTTGTAACATGATCTAC
391 TAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTAC
*
186553557 CTATTTCTACCATTTATTTGACTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTG
456 CTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTG
*
186553622 TATTTTGATGTTTAATTGTAG
521 TATTTTGATGTTTAATGGTAG
186553643 ATTATGCATGTTTATGGTTGGAGAAA-AACTTTTGCTAAGT--TTTTCAATGAAAATGCTAAAAA
1 ATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
186553705 GGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAA-TGTGGG-TTT
66 GGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
* *
186553768 T-TAGTTATGAAAGTGGTTC-GCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTAAA
131 TATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACA
*
186553831 AGCCTAGGGGAAAAGTGTAAAT--GATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTAT
196 AGCCTAGGGTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTAT
*
186553894 GATAAAATTTAGTAGTTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAAC
261 GATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAAC
*
186553959 CCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTT-TTTAAGCTTTCCAAGCTCTATAG
326 CCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAG
186554023 TAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTAC
391 TAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTAC
186554088 C-ATTTCTACTACATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTG
456 CTATTTCTAC--CATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTG
186554152 TGTATTTTGATGTTTAATGGTAG
519 TGTATTTTGATGTTTAATGGTAG
186554175 ATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
1 ATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
186554240 GGACTAATTTGTAAAAGTTATAAAATTTGTCAT-AAAGTGTGATTTAGTGGAAATTGTGGG-TTT
66 GGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
* *
186554303 TATAGTTATGAAAGTGG-TCGGCTAGGCTTAAATTGAAAATAAATTGAATGAAAATTATTTTAAA
131 TATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACA
*
186554367 AGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTAT
196 AGCCTAGGGTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTAT
186554432 GATAAAA-TTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAAC
261 GATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAAC
186554496 CCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTT-CAAGCTCCATAG
326 CCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAG
* *
186554560 TAAGT-CTTTCTTG-CCCG-TTTTAATGA-TTTCA-ATTTTTGAAATCCTTGTAACATGATCTAC
391 TAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTAC
186554620 CTATTTCTACCATTTATTTGAGTTATGATG-AGGTCTAGGG--TGAACCATGTTATAAATTTGTG
456 CTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTG
186554682 TATTTTGATGTTTAATGGTAG
521 TATTTTGATGTTTAATGGTAG
*
186554703 ATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
1 ATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
186554768 GGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
66 GGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
186554833 TATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACA
131 TATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACA
* ** * * *
186554898 ATCCTAGCTTAAAAGTGTAAATATGATAAAATTTAGGGGC-AAAATTTAATTTTTGCCGTAGTAT
196 AGCCTAGGGTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTAT
186554962 GATAAAA-TTAGTAATT-AATGTTTAAATAAACAAAAT-AAAGCCAAATTTTGGTCATCTTCAAC
261 GATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAAC
186555024 CCTCTCGGCCGAAATTTTGAA-ACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATA
326 CC-CTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATA
* *
186555088 GTAAGTTCGTTCTTGCCCCGTTTTTAATGATTTTCAC-ATTTTGAAATCCTTGTAACATGATCTA
390 GTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTA
* *
186555152 CCTATTTCTACCATTTATTTTACTTATGATGAAGGTCTAGGGTTTGAACCATG--ATAAATTTGT
455 CCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGT
186555215 GTATTTTGATGTTTAAT-GTAG
520 GTATTTTGATGTTTAATGGTAG
*
186555236 ATTATGCATGTTTATGGTTGGA-AAACAACTTTTGCTAAGTTATTTTCAATGAAAATGCTAAAAA
1 ATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
186555300 GGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGG-TTT
66 GGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
* * *
186555364 T-TAGTTATGAAAGTGGTTCTGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTAAA
131 TATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACA
*
186555428 AGCCTAGGGGCAAAAGTGTAAAT--GATAAAATTTAGGGGCAAAAATGTAA-TTTTGCCATAGTA
196 AGCCTA-GGGTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTA
* * **
186555490 TGATAAAATTTAGCAGTTAAATGTTTAAAT-AA-AAAATAAAAGAAAAATTTTGGTCATCTTCAA
260 TGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAA
*
186555553 CCCCTTGGCCG-AATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATA
325 CCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATA
186555617 GTAAGTCCGTTCTTGCCCCG-TTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTA
390 GTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTA
*
186555681 CCTATTTCTACCATTTATTTGAGTTATGATGAAGGTTTAGGGTTTGAACCATGTTATAAATTTGT
455 CCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGT
186555746 GTATTTTGATGTTTAATGGTAG
520 GTATTTTGATGTTTAATGGTAG
*
186555768 ATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATACTAAAAA
1 ATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
* *
186555833 GGACTAATTTGTAAAACTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
66 GGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
*
186555898 TATAGTTATGAAAGTGGTTCGGCTAGGCTTAAA-TGAAAATAAATTTAATGAAAATTA-TTTACA
131 TATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACA
* *
186555961 AGCCTAGGGTAAAAGTGTAAATATGATAAAATTTA-GGGCAAAAATGTAATTTTTTCCATAGTAT
196 AGCCTAGGGTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTAT
186556025 GATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGG-CATCTTCAAC
261 GATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAAC
**
186556089 CCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGGGCCATAG
326 CCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAG
* * *
186556154 CAAGTCTGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTTAAATCCTTGTAACATGATCTAC
391 TAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTAC
*
186556219 CAATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTG
456 CTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTG
186556284 TATTTTGATGTTTAATGGTAG
521 TATTTTGATGTTTAATGGTAG
*
186556305 ATTATGCATGTTTATGGTTAG-GAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
1 ATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
*
186556369 GGACTAATTTGTAAAAGTTATAAAATTTG-CATAAAAGTGTGATTTAATGGAAATTGTGGGTTTT
66 GGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
* *
186556433 TATAGTTATGAAAGTGGTTCGGCTCGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTGACA
131 TATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACA
186556498 AGCCTAGGGTAAAAGTGTA
196 AGCCTAGGGTAAAAGTGTA
186556517 TGTAACACCC
Statistics
Matches: 5790, Mismatches: 171, Indels: 208
0.94 0.03 0.03
Matches are distributed among these distances:
528 239 0.04
529 555 0.10
530 961 0.17
531 711 0.12
532 1009 0.17
533 721 0.12
534 586 0.10
535 385 0.07
536 280 0.05
537 285 0.05
538 58 0.01
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (541 bp):
ATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA
GGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
TATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACA
AGCCTAGGGTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTAT
GATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAAC
CCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAG
TAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTAC
CTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTG
TATTTTGATGTTTAATGGTAG
Found at i:186559099 original size:20 final size:20
Alignment explanation
Indices: 186559076--186559113 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
186559066 CACATCCAAA
*
186559076 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
186559096 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
186559114 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:186565427 original size:28 final size:28
Alignment explanation
Indices: 186565381--186565449 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
186565371 TTTAAAACCC
*
186565381 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
186565408 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
186565436 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
186565450 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:186566273 original size:12 final size:12
Alignment explanation
Indices: 186566256--186566280 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
186566246 TATGTATGTT
186566256 TGAAAATTTTTA
1 TGAAAATTTTTA
186566268 TGAAAATTTTTA
1 TGAAAATTTTTA
186566280 T
1 T
186566281 TATTTACTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGAAAATTTTTA
Found at i:186567096 original size:27 final size:27
Alignment explanation
Indices: 186567080--186567249 Score: 209
Period size: 27 Copynumber: 6.3 Consensus size: 27
186567070 CGACTTGTAA
186567080 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
*
186567107 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* *
186567134 AATTACTATTTTATCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
** *
186567161 AATTACTGTTTTCCCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* *
186567188 AATTACTATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAG
* * *
186567215 AATTACCGTTTTACCTTCAATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
186567242 AATTACCA
1 AATTACCA
186567250 AAATACCCTT
Statistics
Matches: 123, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.02
27 119 0.97
28 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAG
Found at i:186567265 original size:27 final size:27
Alignment explanation
Indices: 186567242--186567395 Score: 218
Period size: 27 Copynumber: 5.7 Consensus size: 27
186567232 CAATTTACAG
186567242 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * * *
186567269 AATCACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
186567296 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
186567323 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
186567350 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
186567377 AATTACCAAAATACCCTTG
1 AATTACCAAAATACCCTTG
186567396 TAGGGTAGAA
Statistics
Matches: 107, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 107 1.00
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:186567267 original size:54 final size:54
Alignment explanation
Indices: 186567080--186567247 Score: 273
Period size: 54 Copynumber: 3.1 Consensus size: 54
186567070 CGACTTGTAA
*
186567080 AATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* * *
186567134 AATTACTATTTTATCCTCGATTTACAGAATTACTGTTTTCCCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* * *
186567188 AATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCTTCAATTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
186567242 AATTAC
1 AATTAC
186567248 CAAAATACCC
Statistics
Matches: 104, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 104 1.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (54 bp):
AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
Found at i:186567395 original size:81 final size:81
Alignment explanation
Indices: 186567235--186567395 Score: 241
Period size: 81 Copynumber: 2.0 Consensus size: 81
186567225 TTACCTTCAA
* * *
186567235 TTTACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAAATT
1 TTTACAAAATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATT
*
186567300 ACTAAAATACCCTTGG
66 ACCAAAATACCCTTGG
* * * * *
186567316 TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATT
1 TTTACAAAATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATT
186567381 ACCAAAATACCCTTG
66 ACCAAAATACCCTTG
186567396 TAGGGTAGAA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.32
Consensus pattern (81 bp):
TTTACAAAATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATT
ACCAAAATACCCTTGG
Found at i:186567409 original size:54 final size:54
Alignment explanation
Indices: 186567242--186567392 Score: 257
Period size: 54 Copynumber: 2.8 Consensus size: 54
186567232 CAATTTACAG
* *
186567242 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
* *
186567296 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
*
186567350 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCC
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCC
186567393 TTGTAGGGTA
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 91 1.00
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
Found at i:186570467 original size:12 final size:12
Alignment explanation
Indices: 186570450--186570474 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
186570440 TATGTATGTT
186570450 TGAAAATTTTTA
1 TGAAAATTTTTA
186570462 TGAAAATTTTTA
1 TGAAAATTTTTA
186570474 T
1 T
186570475 TATTTACTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGAAAATTTTTA
Found at i:186571292 original size:27 final size:27
Alignment explanation
Indices: 186571276--186571443 Score: 200
Period size: 27 Copynumber: 6.3 Consensus size: 27
186571266 CGACTTGTAA
186571276 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
*
186571303 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* *
186571330 AATTACTATTTTATCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
*
186571357 AATTA-C-TTTTCCCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* *
186571382 AATTACTATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAG
* * * *
186571409 AATTACCGTTTTACCTTCAATTTATAG
1 AATTACCATTTTACCCTCGATTTACAG
186571436 AATTACCA
1 AATTACCA
186571444 AAATACCCTT
Statistics
Matches: 120, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
24 1 0.01
25 20 0.17
26 1 0.01
27 96 0.80
28 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAG
Found at i:186571386 original size:79 final size:79
Alignment explanation
Indices: 186571296--186571441 Score: 197
Period size: 79 Copynumber: 1.8 Consensus size: 79
186571286 TTACCCTCGA
* * *
186571296 TTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTATCC-TCGATTTACAGAA
1 TTTACAGAATTACCATTTTACCCTCGA-TTTACAGAATTACCATTTTA-CCTTCAATTTACAGAA
186571359 TTACTTTTCCCCTCAG
64 TTACTTTTCCCCTCAG
* * * *
186571375 TTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCTTCAATTTATAGAATT
1 TTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCTTCAATTTACAGAATT
186571440 AC
66 AC
186571442 CAAAATACCC
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
78 2 0.03
79 55 0.95
80 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (79 bp):
TTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCTTCAATTTACAGAATT
ACTTTTCCCCTCAG
Found at i:186571450 original size:27 final size:26
Alignment explanation
Indices: 186571401--186571584 Score: 73
Period size: 27 Copynumber: 6.9 Consensus size: 26
186571391 TTTACCCTCG
****
186571401 ATTTATAGAATTACCGTTTTACCTTCA
1 ATTTATAGAATTACCAAAATACCTT-A
*
186571428 ATTTATAGAATTACCAAAATACCCTTG
1 ATTTATAGAATTACCAAAATA-CCTTA
* * * *
186571455 GTTTATAAAATCACCAAAATACCCCTA
1 ATTTATAGAATTACCAAAATA-CCTTA
* * * * *
186571482 GTTTGTAAAATTACTAAAATACCCTTG
1 ATTTATAGAATTACCAAAATA-CCTTA
* * * * *
186571509 GTTTACAAAATTACCAAAATACCCCTG
1 ATTTATAGAATTACCAAAATA-CCTTA
* * * * *
186571536 GTTTGTAAAATTACTAAAATACCCTTT
1 ATTTATAGAATTACCAAAATA-CCTTA
* *
186571563 GTTTATAAAATTACC-AAATACC
1 ATTTATAGAATTACCAAAATACC
186571585 CTTGTAGGGT
Statistics
Matches: 130, Mismatches: 26, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
25 2 0.02
26 5 0.04
27 119 0.92
28 4 0.03
ACGTcount: A:0.39, C:0.20, G:0.07, T:0.34
Consensus pattern (26 bp):
ATTTATAGAATTACCAAAATACCTTA
Found at i:186571494 original size:54 final size:54
Alignment explanation
Indices: 186571436--186571585 Score: 248
Period size: 54 Copynumber: 2.8 Consensus size: 54
186571426 CAATTTATAG
* *
186571436 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
* *
186571490 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
*
186571544 AATTACTAAAATACCCTTTGTTTATAAAATTACC-AAATACCC
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCC
186571586 TTGTAGGGTA
Statistics
Matches: 90, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
53 8 0.09
54 82 0.91
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
Found at i:186571529 original size:81 final size:80
Alignment explanation
Indices: 186571436--186571588 Score: 225
Period size: 81 Copynumber: 1.9 Consensus size: 80
186571426 CAATTTATAG
* *
186571436 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATTAC-AAAA
186571501 TACCCTTGGTTTACAA
65 TACCCTTGGTTTACAA
* * * * * *
186571517 AATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAT
1 AATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATTACAAAAT
186571582 ACCCTTG
66 ACCCTTG
186571589 TAGGGTAGAA
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 11 0.17
81 53 0.83
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (80 bp):
AATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATTACAAAAT
ACCCTTGGTTTACAA
Found at i:186574471 original size:20 final size:20
Alignment explanation
Indices: 186574448--186574485 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
186574438 CACATCCAAA
*
186574448 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
186574468 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
186574486 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:186579489 original size:537 final size:540
Alignment explanation
Indices: 186577883--186586076 Score: 15137
Period size: 537 Copynumber: 15.3 Consensus size: 540
186577873 TTTTGAAGAA
* * * *
186577883 AACCCCTTGGCTGAATTTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCAA
1 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
186577948 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
66 TAGTAAGT-CGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
*
186578013 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTTTAGGGTTTGAACCATGTTATAAATTT
130 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTT
186578078 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
195 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
* * *
186578143 GATTTTCAATGAAAATACTAAAAAGGACTAATTTGTAAAACTTATAAAATTTTTCATAAAAGTGT
260 GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGT
* *
186578208 GATTTAGTGGAAATTGTGGGTTTTTATAGTGATGAAAGTGGTTCGGCTAGGCTTAAATTGAAAAT
325 GATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAAT
* *
186578273 AAATTTAATGAAAATTATTGTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCA
390 AAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCA
*
186578338 AAAATGTAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAA
455 AAAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAA
*
186578403 AGCCAAATTTTGGCCATCTTC
520 AGCCAAATTTTGGTCATCTTC
*
186578424 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGGTCCA
1 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
* *
186578489 TAGCAAGTCTGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTTAAATCCTTGTAACATGATC
66 TAGTAAGTC-GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
*
186578554 TACCAATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTT
130 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTT
* * *
186578619 GTGTATTTTGATGTTTAATGGTAGGTTATGCATGTTTATGGTTAGAGAAATAACTTTTGCTAAGT
195 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
*
186578684 GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGCCATAAAAGTGT
260 GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGT
*
186578749 GATTTATTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAAT
325 GATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAAT
* * ** *
186578814 AAATTGAATGAAAATTATTTTACAATCGTAGCTTAAAAGTGTAAATAAGATAAAATTTAGGGGCA
390 AAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCA
* * * *
186578879 AAAATTTAATTTTTGCCGTAGTATGATAAAAATTAGTAATT-AATGTTTAAATAAACAAAATAGA
455 AAAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAA
*
186578943 AGTCAAATTTTGGTCATCTTC
520 AGCCAAATTTTGGTCATCTTC
186578964 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
1 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
* *
186579029 TAGTAAGTTCGTTCTTGCCCCGTTTTTAATGATTTTCACATTCTTGAAATCCTTGTAACATGATC
66 TAGTAAG-TCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
186579094 TACC-ATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTG-ACCATGTTAATAAATT
130 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTT-ATAAATT
186579157 TGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAG
194 TGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAG
*
186579222 TGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGCAAAAGTTAT-AAATTTGTCAT-AAAGTG
259 TGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTG
* *
186579285 TGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGATCGGCTAGGCTTAAATTGAAAA
324 TGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAA
* * * *
186579350 TAAATTGAAAGAAAATTATTTTAAAAGCTTAGGGTAAAAGTGTAAATATCATAAAATTTAGGGGC
389 TAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGC
*
186579415 AAAAATATAATTTTT-CCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAA
454 AAAAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAA
*
186579479 AAGCCAAATTTTGGTCATCTTG
519 AAGCCAAATTTTGGTCATCTTC
*
186579501 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGTTCCA
1 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
186579566 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTT-ACGTTTTTGAAATCCTTGTAACATGATC
66 TAGTAAGT-CGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
* *
186579630 TACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACTATGTTATAAATTT
130 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTT
*
186579695 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAAGT
195 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
186579760 GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGT
260 GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGT
186579825 GATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAAT
325 GATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAAT
186579890 AAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATA-GATAAAATTTAGGGGC-
390 AAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCA
*
186579953 AAAATTTAATTTTT-CCATAGTATGATAAAATTTAGTAATT-AATGTTTAAATAAACAAAATAAA
455 AAAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAA
186580016 AGCCAAATTTTGGTCATCTTC
520 AGCCAAATTTTGGTCATCTTC
186580037 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
1 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
186580102 TAGTAAGTCGTTCTTGCCCCGTTTTTAATGATTTTCA--TTTTTGAAATCCTTGTAACATGATCT
66 TAGTAAGTCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
186580165 ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTG
131 ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTG
186580230 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTG
196 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTG
186580295 ATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTAT-AAATTTG-CATAAAAGTGTG
261 ATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTG
186580358 ATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATA
326 ATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATA
186580423 AATTGAATGAAAATTATTTTA-AAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAA
391 AATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAA
186580487 AAATGTAATTTTT-CCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAA
456 AAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAA
186580551 GCCAAATTTTGGTCATCTTC
521 GCCAAATTTTGGTCATCTTC
186580571 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
1 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
186580636 TAGTAAG-CTGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
66 TAGTAAGTC-GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
186580700 TACCTATTTCTACCATTTATTTGAGTTATGATG-AGGTCTAGGGTTTGAA-CATGTTATAAATTT
130 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTT
186580763 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
195 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
186580828 GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTAT-AAATTTGTCATAAAAGTGT
260 GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGT
186580892 GATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAAT
325 GATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAAT
186580957 AAATTGAATGAAAATTATTTTA-AAGCCTAGGGTAAAAGTGTAAATAATGATAAAATTTAGGGGC
390 AAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAAT-ATGATAAAATTTAGGGGC
186581021 AAAAAT-TAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAA
454 AAAAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAA
186581085 AAGCCAAATTTTGGTCATCTTC
519 AAGCCAAATTTTGGTCATCTTC
186581107 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
1 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
186581172 TAGTAAGTCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
66 TAGTAAGTCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
186581237 ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTG
131 ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTG
186581302 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAA--G
196 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTG
186581365 ATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTG
261 ATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTG
*
186581430 ATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATA
326 ATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATA
186581495 AATTGAATGAAAATTATTTTACAAGCCT---GTAAAAGTGTAAATAATGATAAAATTTAGGGGCA
391 AATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAAT-ATGATAAAATTTAGGGGCA
*
186581557 AAAATTTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAA
455 AAAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAA
186581622 AGCCAAATTTTGGTCATCTTC
520 AGCCAAATTTTGGTCATCTTC
186581643 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
1 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
*
186581708 TAGTAAGTCGTTCTTGCCCCGTTTTTAATGATTTTCAC-ATTTTGAAATCCTTGTAACATGATCT
66 TAGTAAGTCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
186581772 ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTG
131 ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTG
*
186581837 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAAGTG
196 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTG
186581902 ATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTG
261 ATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTG
186581967 ATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATA
326 ATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATA
186582032 AATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATA-GATAAAATTTAGGGGCAA
391 AATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAA
186582096 AAAT-TAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAA
456 AAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAA
186582160 GCCAAATTTTGGTCATCTTC
521 GCCAAATTTTGGTCATCTTC
186582180 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT--A
1 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
186582243 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
66 TAGTAAGT-CGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
186582308 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTT
130 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTT
186582373 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
195 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
186582438 GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTAT-AAATTTGTCAT-AAAGTGT
260 GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGT
*
186582501 GATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAATTGAAAAT
325 GATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAAT
*
186582566 AAATTGAATGAAAATTATTTTAAAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCA
390 AAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCA
186582631 AAAAT-TAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAA
455 AAAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAA
186582695 AGCCAAATTTTGGTCATCTTC
520 AGCCAAATTTTGGTCATCTTC
186582716 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
1 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
186582781 TAGTAAGTCGTTCTTGCCCCGTTTTTAATGATTTTCA--TTTTTGAAATCCTTGTAACATGATCT
66 TAGTAAGTCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
186582844 ACCTATTTCTACCATTTATTTGAGTTATGATG-AGGTCTAGGGTTTGAA-CATGTTATAAATTTG
131 ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTG
186582907 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTT-GAGAAACAACTTTTGCTAAGTG
196 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTG
186582971 ATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTAT-AAATTTGTCATAAAAGTGTG
261 ATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTG
186583035 ATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATA
326 ATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATA
186583100 AATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAA
391 AATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAA
* *
186583165 AAATTTAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAA
456 AAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAA
186583230 GCCAAATTTTGGTCATCTTC
521 GCCAAATTTTGGTCATCTTC
186583250 AA-CCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
1 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
*
186583314 TAGTAAGTCGTTCTTGCCCCGTTTTTAATGATTTTCACATTTTTGAAATCCTTGTAACATGATCT
66 TAGTAAGTCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
186583379 ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTG
131 ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTG
186583444 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT-
196 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTG
186583508 ATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTG
261 ATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTG
186583573 ATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTT--GCTAGGCTT-AAGTGAAAATA
326 ATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATA
186583635 AATTGAATGAAAATTATTTTA-AAGCCTAGGGTAAAAGTGT-AA-ATGATAAAATTTAGGGGCAA
391 AATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAA
186583697 AAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAA
456 AAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAA
186583762 GCCAAATTTTGGTCATCTTC
521 GCCAAATTTTGGTCATCTTC
186583782 AACCCCT---CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
1 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
186583844 TAGTAAGTCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
66 TAGTAAGTCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
186583909 ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT-TAGGGTTTGAACCATGTTATAAATTTG
131 ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTG
186583973 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTG
196 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTG
* *
186584038 ATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAACTTATAAAATTTTTCATAAAAGTGTG
261 ATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTG
*
186584103 ATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAATTGAAAATA
326 ATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATA
186584168 AATTGAATGAAAATTA-TTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAA
391 AATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAA
186584232 AAATGTAATTTTT-CCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAA
456 AAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAA
186584296 GCCAAATTTTGGTCATCTTC
521 GCCAAATTTTGGTCATCTTC
186584316 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
1 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
186584381 TAGTAAGTCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
66 TAGTAAGTCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
186584446 ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTG
131 ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTG
186584511 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTG
196 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTG
186584576 ATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTG-CATAAAAGTGTG
261 ATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTG
186584640 ATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATA
326 ATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATA
186584705 AATTGAATGAAAATTA-TTTACAAGCCTAGGGTAAAAGTGTAAA-ATGATAAAATTTAGGGGC-A
391 AATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAA
186584767 AAAT-TAATTTTT-CCATAGTATGATAAAATTTAGTAATT-AATGTTTAAATAAACAAAA-AAAA
456 AAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAA
186584828 GCCAAATTTTGGTCATCTTC
521 GCCAAATTTTGGTCATCTTC
186584848 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTA-GGTTTTGTTTAAGCTTTCCAAGCT--A
1 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
186584910 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
66 TAGTAAGT-CGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
186584975 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTT
130 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTT
186585040 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
195 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
*
186585105 GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAATTTTGTC--AAAAGTGT
260 GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGT
*
186585168 GATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAATTGAAAAT
325 GATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAAT
186585233 AAATTGAATGAAAATTATTTTA-AAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCA
390 AAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCA
186585297 AAAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAA
455 AAAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAA
186585362 AG-CAAATTTTGGTCATCTTC
520 AGCCAAATTTTGGTCATCTTC
186585382 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
1 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
186585447 TAGTAAGTCTGTTCTTGCCCCGTTTTTAATGATTTTCA--TTTTTGAAATCCTTGTAACATGATC
66 TAGTAAGTC-GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
*
186585510 TACCTATTTCTACCATTTATTTGAGTTATGATG-AGGTCTAGGGTTTGAACTATGTTATAAATTT
130 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTT
*
186585574 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAAGT
195 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
186585639 GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGT
260 GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGT
186585704 GATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAAT
325 GATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAAT
186585769 AAATTGAATGAAAATTATTTTACAAGCCT-GGGTAAAAGTGTAAATATGATAAAATTTAGGGGC-
390 AAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCA
186585832 AAAA--TAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAA
455 AAAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAA
186585895 AGCCAAATTTTGGTCATCTTC
520 AGCCAAATTTTGGTCATCTTC
186585916 AACCCC-CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
1 AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
186585980 TAGTAAGT-GTTCTTGCCCCG-TTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
66 TAGTAAGTCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
186586043 ACCTATTTCTACCATTTATTTGAGTTATGATGAA
131 ACCTATTTCTACCATTTATTTGAGTTATGATGAA
186586077 NNNNNNNNNN
Statistics
Matches: 7472, Mismatches: 106, Indels: 158
0.97 0.01 0.02
Matches are distributed among these distances:
529 211 0.03
530 536 0.07
531 66 0.01
532 436 0.06
533 567 0.08
534 948 0.13
535 765 0.10
536 1089 0.15
537 1544 0.21
538 390 0.05
539 272 0.04
540 182 0.02
541 466 0.06
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.37
Consensus pattern (540 bp):
AACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
TAGTAAGTCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTG
TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTG
ATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTG
ATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATA
AATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAA
AAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAA
GCCAAATTTTGGTCATCTTC
Found at i:186591828 original size:40 final size:40
Alignment explanation
Indices: 186591783--186591949 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
186591773 CGGAATACAA
186591783 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
186591823 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
186591863 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * * * *
186591903 CCGGATATAATTTCCAGCA-TAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
186591942 CCGGATAT
1 CCGGATAT
186591950 CATTCAATTG
Statistics
Matches: 106, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
39 25 0.24
40 81 0.76
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:186599896 original size:40 final size:40
Alignment explanation
Indices: 186599851--186599980 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
186599841 CGGAATACAA
186599851 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
186599891 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
186599931 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
186599971 CCGGATATAA
1 CCGGATATAA
186599981 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:186604501 original size:40 final size:40
Alignment explanation
Indices: 186604405--186604592 Score: 232
Period size: 40 Copynumber: 4.7 Consensus size: 40
186604395 CGAATGGTGT
* * * * * *
186604405 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* * *
186604446 CCGGGTCAATTCCCGAAGGCATTTGTGCTAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
186604486 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
186604526 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
186604566 CCGGGCTAATTCCCGAAGGCAATTGTG
1 CCGGGTTAAGTCCCGAAGGCATTTGTG
186604593 TGAATCACTA
Statistics
Matches: 129, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 105 0.81
41 24 0.19
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:186604608 original size:80 final size:79
Alignment explanation
Indices: 186604404--186604623 Score: 237
Period size: 80 Copynumber: 2.7 Consensus size: 79
186604394 TCGAATGGTG
* * *
186604404 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCT-AAGTGACTAAATCCGGGTCAATTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAA-TCACTAAA-CCGGGTCAAGTCCCGAAGGCAT
* *
186604468 TTGTGCTAGTTACCAAA
63 TCGTGCGAGTTACCAAA
* * * * * * *
186604485 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAATCA-CTAAACCGGGTCAAGTCCCGAAGGCATTC
*
186604550 GTGCGAGTTACTAAA
65 GTGCGAGTTACCAAA
* *
186604565 TCCGGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATAACCGGG-CAATGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAATCACTA-AACCGGGTCAA-GTCCCGAAG
186604624 ACAATCGAGT
Statistics
Matches: 114, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 4 0.04
80 80 0.70
81 30 0.26
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAATCACTAAACCGGGTCAAGTCCCGAAGGCATTCG
TGCGAGTTACCAAA
Found at i:186604610 original size:40 final size:39
Alignment explanation
Indices: 186604405--186604637 Score: 177
Period size: 40 Copynumber: 5.8 Consensus size: 39
186604395 CGAATGGTGT
** * *
186604405 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTG-TGAGTTACTAAA
* * *
186604445 TCCGGG-TCAATTCCCGAAGGCATTTGTGCT-AGTTACCAAAA
1 -CCGGGCT-AAGTCCCGAAGGCAATTGTG-TGAGTTA-CTAAA
* * * *
186604486 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGTGAGTTA-CTAAA
* *
186604526 CCGGGTTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATT-GTGTGAGTTACTAAA
* * *
186604565 TCCGGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCAATTGTGTGAGTTACTA-AA
* * *
186604606 CCGGGC-AATGTCCCGAAGACAATCGAGTGAGT
1 CCGGGCTAA-GTCCCGAAGGCAATTGTGTGAGT
186604638 CGCTATATCC
Statistics
Matches: 165, Mismatches: 18, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
39 8 0.05
40 122 0.74
41 35 0.21
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGTGAGTTACTAAA
Found at i:186604619 original size:120 final size:121
Alignment explanation
Indices: 186604405--186604623 Score: 284
Period size: 120 Copynumber: 1.8 Consensus size: 121
186604395 CGAATGGTGT
* * *
186604405 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* * *
186604470 GTGCTAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCTAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
186604526 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
186604589 TGTG-TGAATCACTATAACCGGG-CAATGTCCCGAAG
65 TGTGCT-AATCACCAAAACCGGGTCAA-GTCCCGAAG
186604624 ACAATCGAGT
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
119 4 0.05
120 55 0.65
121 25 0.30
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCTAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:186604644 original size:40 final size:40
Alignment explanation
Indices: 186604566--186604649 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
186604556 GTTACTAAAT
* * *
186604566 CCGGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGTGAATCACTATAA
* * *
186604606 CCGGGC-AATGTCCCGAAGACAATCGAGTGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGTGAATCACTATAA
186604646 CCGG
1 CCGG
186604650 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 3 0.08
40 34 0.92
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.21
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGTGAATCACTATAA
Found at i:186612156 original size:40 final size:40
Alignment explanation
Indices: 186612057--186612244 Score: 223
Period size: 40 Copynumber: 4.7 Consensus size: 40
186612047 CGAATGTTGT
* * * * * *
186612057 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* * * *
186612098 CCGGGTCAATTCCTGAAGGCATTTGTGCTAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
186612138 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
186612178 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
186612218 CCGGGCTAATTCCCGAAGGCAATTGTG
1 CCGGGTTAAGTCCCGAAGGCATTTGTG
186612245 TGAATCACTA
Statistics
Matches: 127, Mismatches: 20, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
40 104 0.82
41 23 0.18
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:186612260 original size:80 final size:79
Alignment explanation
Indices: 186612056--186612289 Score: 220
Period size: 80 Copynumber: 2.9 Consensus size: 79
186612046 TCGAATGTTG
* * * * *
186612056 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCT-AAGTGACTAAATCCGGGTCAATTCCTGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAA-TCACTAAA-CCGGGTAAAGTCCCGAAGGCAT
* *
186612120 TTGTGCTAGTTACCAAA
63 TCGTGCGAGTTACCAAA
* * * * * * *
186612137 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAATCA-CTAAACCGGGTAAAGTCCCGAAGGCATTC
*
186612202 GTGCGAGTTACTAAA
65 GTGCGAGTTACCAAA
* * * *
186612217 TCCGGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATAACCGGG-AAATGTCCCGAAGACAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAATCACTA-AACCGGGTAAA-GTCCCGAAGGCATT
*
186612281 CGAGCGAGT
64 CGTGCGAGT
186612290 CGCTATATCC
Statistics
Matches: 124, Mismatches: 25, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
79 4 0.03
80 90 0.73
81 30 0.24
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAATCACTAAACCGGGTAAAGTCCCGAAGGCATTCG
TGCGAGTTACCAAA
Found at i:186612262 original size:40 final size:39
Alignment explanation
Indices: 186612057--186612289 Score: 182
Period size: 40 Copynumber: 5.8 Consensus size: 39
186612047 CGAATGTTGT
* ** * *
186612057 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGGTTAAGTCCCGAAGGCAATTGTGC-GAGTTACTAAA
* * * * * *
186612097 TCCGGGTCAATTCCTGAAGGCATTTGTGCTAGTTACCAAAA
1 -CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
* *
186612138 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
186612178 CCGGGTTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAA
1 CCGGGTTAAGTCCCGAAGGCAATT-GTGCGAGTTACTAAA
* * * * *
186612217 TCCGGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATAA
1 -CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTA-AA
* * * *
186612258 CCGGG-AAATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGTTAA-GTCCCGAAGGCAATTGTGCGAGT
186612290 CGCTATATCC
Statistics
Matches: 160, Mismatches: 26, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
39 8 0.05
40 120 0.75
41 32 0.20
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (39 bp):
CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAA
Found at i:186612271 original size:120 final size:121
Alignment explanation
Indices: 186612057--186612275 Score: 275
Period size: 120 Copynumber: 1.8 Consensus size: 121
186612047 CGAATGTTGT
* * * *
186612057 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCTGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* * *
186612122 GTGCTAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCTAATCACCAAAACCGGGTAAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
186612178 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
186612241 TGTG-TGAATCACTATAACCGGG-AAATGTCCCGAAG
65 TGTGCT-AATCACCAAAACCGGGTAAA-GTCCCGAAG
186612276 ACAATCGAGC
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
119 4 0.05
120 54 0.65
121 25 0.30
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCTAATCACCAAAACCGGGTAAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:186614434 original size:40 final size:40
Alignment explanation
Indices: 186614272--186614439 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
186614262 TCTTCGGAAT
** * *
186614272 TTAG-CCGGATATAACCGCAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * * *** *
186614311 TTAACCCAGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
186614351 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
186614391 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
186614431 TTAGCCCGG
1 TTAGCCCGG
186614440 GTATCATTCA
Statistics
Matches: 104, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 3 0.03
40 100 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:186630904 original size:40 final size:40
Alignment explanation
Indices: 186630830--186630975 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
186630820 CCGCACCAAG
* * * * * *
186630830 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
186630870 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
186630910 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
186630950 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
186630976 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:186630990 original size:40 final size:40
Alignment explanation
Indices: 186630862--186631013 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
186630852 ATCACGATTT
* * * * *
186630862 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
186630902 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
186630942 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
186630982 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
186631014 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:186636903 original size:17 final size:18
Alignment explanation
Indices: 186636861--186636909 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
186636851 AGTTGAAAAG
186636861 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
186636880 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
186636897 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
186636910 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:186637798 original size:40 final size:40
Alignment explanation
Indices: 186637732--186637898 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
186637722 AAATTGAATG
* * *
186637732 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
186637771 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
186637811 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
186637851 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
186637891 ATATCCGG
1 ATATCCGG
186637899 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:186644912 original size:17 final size:18
Alignment explanation
Indices: 186644870--186644918 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
186644860 AGTTGAAAAG
186644870 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
186644889 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
186644906 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
186644919 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:186645806 original size:40 final size:40
Alignment explanation
Indices: 186645740--186645906 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
186645730 AAATTGAATG
* * *
186645740 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
186645779 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
186645819 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
186645859 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
186645899 ATATCCGG
1 ATATCCGG
186645907 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:186649280 original size:29 final size:29
Alignment explanation
Indices: 186649248--186649326 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 29
186649238 ATACCCTCCG
* *
186649248 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
186649277 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
186649306 AGCACGCACACTTAGTGCCAT
1 AGCTCGCACACCCAGTGCCAT
186649327 CTCGTCACCG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.28
Consensus pattern (29 bp):
AGCTCGCACACCCAGTGCCATATATTTCC
Found at i:186657123 original size:29 final size:29
Alignment explanation
Indices: 186657091--186657168 Score: 84
Period size: 29 Copynumber: 2.7 Consensus size: 29
186657081 ATACCCTCCG
* *
186657091 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
186657120 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
186657149 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACCCAGTGCCA
186657169 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACCCAGTGCCATATATTTCC
Found at i:186658891 original size:29 final size:27
Alignment explanation
Indices: 186658804--186658926 Score: 110
Period size: 29 Copynumber: 4.4 Consensus size: 27
186658794 TACATACATG
*
186658804 CATATGG-CCATTAGGCCCAATCTCATT
1 CATATGGCCCATCAGGCCCAAT-TCATT
*
186658831 TATATGGCCCATCCA-GCCCAATTCACGTT
1 CATATGGCCCAT-CAGGCCCAATTCA--TT
186658860 CATATGGCCCATCAGGCCCAATTCATAAT
1 CATATGGCCCATCAGGCCCAATTCAT--T
* * *
186658889 CATATGACCCATTA-GACCAATCTCATT
1 CATATGGCCCATCAGGCCCAAT-TCATT
186658916 -ATATGGCCCAT
1 CATATGGCCCAT
186658927 TCGGCCAAAT
Statistics
Matches: 81, Mismatches: 7, Indels: 17
0.77 0.07 0.16
Matches are distributed among these distances:
26 10 0.12
27 11 0.14
28 19 0.23
29 41 0.51
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (27 bp):
CATATGGCCCATCAGGCCCAATTCATT
Found at i:186658945 original size:27 final size:27
Alignment explanation
Indices: 186658805--186658946 Score: 83
Period size: 29 Copynumber: 5.1 Consensus size: 27
186658795 ACATACATGC
* * *
186658805 ATATGG-CCATTAGGCCCAATCTCATTT
1 ATATGGCCCATTCGGCCAAATCACA-TT
* * * *
186658832 ATATGGCCCATCCAGCCCAATTCACGTT
1 ATATGGCCCATTC-GGCCAAATCACATT
* * *
186658860 CATATGGCCCA-TCAGGCCCAATTCATAATC
1 -ATATGGCCCATTC-GG-CCAAATCA-CATT
* * * *
186658890 ATATGACCCATTAGACC-AATCTCATT
1 ATATGGCCCATTCGGCCAAATCACATT
186658916 ATATGGCCCATTCGGCCAAATCACATT
1 ATATGGCCCATTCGGCCAAATCACATT
186658943 ATAT
1 ATAT
186658947 TCATGCTCAC
Statistics
Matches: 85, Mismatches: 23, Indels: 14
0.70 0.19 0.11
Matches are distributed among these distances:
26 16 0.19
27 21 0.25
28 11 0.13
29 35 0.41
30 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.28
Consensus pattern (27 bp):
ATATGGCCCATTCGGCCAAATCACATT
Found at i:186665093 original size:29 final size:29
Alignment explanation
Indices: 186665061--186665196 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
186665051 ATACCCTTCG
** * *
186665061 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
186665090 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
186665119 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
186665148 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
186665177 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
186665197 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:186665188 original size:58 final size:58
Alignment explanation
Indices: 186665036--186665195 Score: 176
Period size: 58 Copynumber: 2.8 Consensus size: 58
186665026 AATTTAAGCC
* *** * * ** * *
186665036 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * *
186665094 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
186665152 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
186665196 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:186666029 original size:143 final size:141
Alignment explanation
Indices: 186665839--186666133 Score: 554
Period size: 143 Copynumber: 2.1 Consensus size: 141
186665829 AAATTCTATA
186665839 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
1 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
*
186665904 TGTTAAACATTCAAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
66 TGCTAAACATTCAAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
*
186665969 GAAGACAACAT
131 GAAAACAACAT
186665980 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATG--CACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
186666045 TTTGCTAAACATTCAAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
64 TTTGCTAAACATTCAAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
186666110 AGGAAAACAACAT
129 AGGAAAACAACAT
186666123 GCATGGCCGAA
1 GCATGGCCGAA
186666134 ATTTAACTCA
Statistics
Matches: 150, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
141 19 0.13
143 131 0.87
ACGTcount: A:0.40, C:0.29, G:0.10, T:0.21
Consensus pattern (141 bp):
GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
TGCTAAACATTCAAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
GAAAACAACAT
Found at i:186672118 original size:30 final size:30
Alignment explanation
Indices: 186672082--186672182 Score: 127
Period size: 28 Copynumber: 3.5 Consensus size: 30
186672072 GACAAGATTG
* *
186672082 GCACTAAGTGTGCAAGTTTAAAATTGTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
186672112 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
186672140 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
186672169 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
186672183 GATTCACTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 24 0.39
29 19 0.31
30 19 0.31
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:186672194 original size:29 final size:28
Alignment explanation
Indices: 186672108--186672186 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
186672098 TTTAAAATTG
* *
186672108 TATAGCACTAAGTGTGCGAGTTTGAT-TC
1 TATAGCACTAAGTGTGCG-GATTGATATA
* *
186672136 TATAGCACTAAGTGTGC-GAGCTGAAAATA
1 TATAGCACTAAGTGTGCGGA-TTG-ATATA
186672165 TATAGCACTAAGTGTGCGGATT
1 TATAGCACTAAGTGTGCGGATT
186672187 CACTATATGC
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
26 1 0.02
27 2 0.05
28 18 0.43
29 19 0.45
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (28 bp):
TATAGCACTAAGTGTGCGGATTGATATA
Found at i:186674336 original size:205 final size:205
Alignment explanation
Indices: 186673976--186674729 Score: 1156
Period size: 205 Copynumber: 3.7 Consensus size: 205
186673966 GCAGATCTAG
* * * * *
186673976 CTGAAGCAAGATCCAAGATGGTTTGGCATTCTTGTGCTTGCAAGGAACAAACCAAAGACATAGCT
1 CTGAAGCAAGATCCAAGATGATTTAGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCT
* *
186674041 GATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
66 AATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * *
186674106 AGAGCAAATCGAAGTCTGGCATCTCCACTTAAACAGGGAGTAGATACATAGTAGATCTCACCTTC
131 AGAACAAATCGAAGTCTGGCATCTCCACTTCAAC-GGGAGCAGATACATAGTAGATCTCACCTTC
186674171 AGATGTTTATA
195 AGATGTTTATA
* * *
186674182 CTGAAGC-AGATCCAAGATGATTTAGCATCCTTGTGCTTACAAGGAGCGAATCGAAGACATAGCT
1 CTGAAGCAAGATCCAAGATGATTTAGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCT
*
186674246 AATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
66 AATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * *
186674311 AGAGCAAATCGAAGTCTGGCATCTCCACTTCAATGGGAAGCAGATACATAGCAGATCTCACCTTC
131 AGAACAAATCGAAGTCTGGCATCTCCACTTCAACGGG-AGCAGATACATAGTAGATCTCACCTTC
*
186674376 GGATGTTTATA
195 AGATGTTTATA
* * *
186674387 CTGAAG-TAGATCCAAGATGATTTAGCATCCTTGTGCTTACAAGGAGCAAATCAAAGGCATAGCT
1 CTGAAGCAAGATCCAAGATGATTTAGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCT
* *
186674451 GATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTTGCATCTCTGTATTGTCAG
66 AATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
*
186674516 AGAACAAATCAAAGTCTGGCATCTCCACTTCAACGGAGAGCAGATACATAGTAGATCTCACCTTC
131 AGAACAAATCGAAGTCTGGCATCTCCACTTCAACGG-GAGCAGATACATAGTAGATCTCACCTTC
* *
186674581 AGATAATTT-CA
195 AGAT-GTTTATA
* *
186674592 CTGAAGCAAGATCCAAGATGATTT-GACATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGC
1 CTGAAGCAAGATCCAAGATGATTTAG-CATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGC
* * *
186674656 TAATTTGGCTTTCATGTGCTTACGATGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCA
65 TAATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
186674721 GAGAACAAA
130 GAGAACAAA
186674730 CCAAAGAAGT
Statistics
Matches: 505, Mismatches: 37, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
204 3 0.01
205 372 0.74
206 130 0.26
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (205 bp):
CTGAAGCAAGATCCAAGATGATTTAGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCT
AATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
AGAACAAATCGAAGTCTGGCATCTCCACTTCAACGGGAGCAGATACATAGTAGATCTCACCTTCA
GATGTTTATA
Found at i:186676456 original size:13 final size:13
Alignment explanation
Indices: 186676401--186676457 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
186676391 ATCTTATTTT
186676401 TATATTATATTATA
1 TATATTA-ATTATA
*
186676415 TA-ATT-ATTTTA
1 TATATTAATTATA
*
186676426 T-TATTTATTAT-
1 TATATTAATTATA
186676437 TCATATTAATTATA
1 T-ATATTAATTATA
186676451 TATATTA
1 TATATTA
186676458 TAAATTATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 11
0.71 0.06 0.22
Matches are distributed among these distances:
11 10 0.29
12 4 0.11
13 18 0.51
14 3 0.09
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.60
Consensus pattern (13 bp):
TATATTAATTATA
Found at i:186676489 original size:45 final size:46
Alignment explanation
Indices: 186676400--186676500 Score: 113
Period size: 45 Copynumber: 2.3 Consensus size: 46
186676390 AATCTTATTT
* * *
186676400 TTATATTATATTATATAATTATTTTATTATTTATTATTCATATTAA
1 TTATATTATATTATATAATTATTTTAATATATACTATTCATATTAA
*
186676446 TTATA-TATATTATA-AATTATTTTTACATATATACT-TTCGTATT-A
1 TTATATTATATTATATAATTA-TTTTA-ATATATACTATTCATATTAA
186676490 -TATATTATATT
1 TTATATTATATT
186676501 TATTTTATAT
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
43 4 0.08
44 12 0.25
45 21 0.44
46 11 0.23
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.58
Consensus pattern (46 bp):
TTATATTATATTATATAATTATTTTAATATATACTATTCATATTAA
Found at i:186676545 original size:21 final size:21
Alignment explanation
Indices: 186676495--186676546 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
186676485 TATTATATAT
* * *
186676495 TATATTTATTTTATATTATTA
1 TATATTTTTTTTATACTACTA
*
186676516 TGTCA-TTTTTTTATACTACTA
1 TAT-ATTTTTTTTATACTACTA
186676537 TATATTTTTT
1 TATATTTTTT
186676547 ATCTATATTA
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
20 1 0.04
21 22 0.92
22 1 0.04
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (21 bp):
TATATTTTTTTTATACTACTA
Found at i:186676872 original size:7 final size:7
Alignment explanation
Indices: 186676860--186676893 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
186676850 TTTTTTTTGT
186676860 TATTATA
1 TATTATA
186676867 TATTATA
1 TATTATA
186676874 TATTATA
1 TATTATA
*
186676881 TATTAAA
1 TATTATA
186676888 TATTAT
1 TATTAT
186676894 TTTAAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TATTATA
Found at i:186676879 original size:14 final size:14
Alignment explanation
Indices: 186676860--186676919 Score: 74
Period size: 14 Copynumber: 4.6 Consensus size: 14
186676850 TTTTTTTTGT
*
186676860 TATTATATATTATA
1 TATTATATATTAAA
186676874 TATTATATATTAAA
1 TATTATATATTAAA
186676888 TATTAT-T-TTAAA
1 TATTATATATTAAA
186676900 -ATTAT-TATTAAA
1 TATTATATATTAAA
*
186676912 TATCATAT
1 TATTATAT
186676920 TTTTTTATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
11 6 0.15
12 10 0.24
13 5 0.12
14 20 0.49
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (14 bp):
TATTATATATTAAA
Found at i:186676920 original size:12 final size:12
Alignment explanation
Indices: 186676865--186676920 Score: 51
Period size: 12 Copynumber: 4.5 Consensus size: 12
186676855 TTTGTTATTA
*
186676865 TATATTATATATT
1 TATATTAAATA-T
186676878 ATATATTAAATAT
1 -TATATTAAATAT
*
186676891 TATTTTAAA-AT
1 TATATTAAATAT
186676902 TATTATTAAATAT
1 TA-TATTAAATAT
*
186676915 CATATT
1 TATATT
186676921 TTTTTATAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
11 4 0.11
12 18 0.50
13 4 0.11
14 10 0.28
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (12 bp):
TATATTAAATAT
Found at i:186679355 original size:33 final size:33
Alignment explanation
Indices: 186679313--186679378 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
186679303 ACCTTTATGC
* *
186679313 CTTAAATTGAAAATGATTTTTA-TATAGGGGGAG
1 CTTAAATTGAAAATGACTTTGACTA-AGGGGGAG
186679346 CTTAAATTGAAAATGACTTTGACTAAGGGGGAG
1 CTTAAATTGAAAATGACTTTGACTAAGGGGGAG
186679379 TAATCTATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (33 bp):
CTTAAATTGAAAATGACTTTGACTAAGGGGGAG
Found at i:186682694 original size:19 final size:19
Alignment explanation
Indices: 186682670--186682709 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
186682660 GTTAAATTGT
*
186682670 AAAGTTGTAAAATTTATGA
1 AAAGTTCTAAAATTTATGA
* *
186682689 AAAGTTCTAAATTTTGTGA
1 AAAGTTCTAAAATTTATGA
186682708 AA
1 AA
186682710 TACATTGGCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.03, G:0.15, T:0.38
Consensus pattern (19 bp):
AAAGTTCTAAAATTTATGA
Found at i:186685573 original size:40 final size:40
Alignment explanation
Indices: 186685518--186685683 Score: 183
Period size: 40 Copynumber: 4.2 Consensus size: 40
186685508 AATGATACCT
* * *
186685518 GGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATATCC
* *
186685558 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TCATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATCATATCC
* * * *
186685598 GGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATATCC
* * * * *
186685638 GGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATATCC
186685678 -GGCTAA
1 GGGCTAA
186685684 ATTCCGAAGA
Statistics
Matches: 104, Mismatches: 20, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
39 6 0.06
40 96 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATATCC
Found at i:186691069 original size:40 final size:39
Alignment explanation
Indices: 186690922--186691102 Score: 236
Period size: 39 Copynumber: 4.6 Consensus size: 39
186690912 GCGAATTGTA
* *
186690922 ATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAATTATG
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATG
* *
186690961 ATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAGCTATG
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATG
*
186691000 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATG
* * * **
186691039 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACC
1 ATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTATG
* *
186691079 ATAACCGGGCTATGTCCCGAAGGC
1 ATATCCGGGCTAAG-CCCGAAGGC
186691103 GTTTGAACGA
Statistics
Matches: 125, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 84 0.67
40 41 0.33
ACGTcount: A:0.25, C:0.23, G:0.31, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATG
Found at i:186699983 original size:29 final size:29
Alignment explanation
Indices: 186699950--186700052 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
186699940 CCTCCGAACT
** * * *
186699950 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
186699979 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
186700008 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
186700037 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
186700053 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:186707901 original size:29 final size:29
Alignment explanation
Indices: 186707873--186707975 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
186707863 CCTCCGAGCT
** * * *
186707873 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
186707902 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
186707931 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
186707960 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
186707976 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:186715842 original size:29 final size:29
Alignment explanation
Indices: 186715741--186715842 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
186715731 CCTCCGAACT
** * * *
186715741 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
186715770 TGCACACTTAGTGCCA-ATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
186715798 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
186715827 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
186715843 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 25 0.38
29 40 0.62
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:186715861 original size:57 final size:57
Alignment explanation
Indices: 186715750--186715861 Score: 127
Period size: 57 Copynumber: 2.0 Consensus size: 57
186715740 TCGCACACCC
* * ** * * *
186715750 AGTGCCGTATTTTTCCAGCTTGCACACTTAGTGCCAATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATATGTCCACCACACACACTT
* *
186715807 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATCTCGT-CACCATACACAC
1 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATAT-GTCCACCACACACAC
186715862 GTATTGCCCG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
57 44 0.98
58 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (57 bp):
AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATATGTCCACCACACACACTT
Found at i:186723756 original size:29 final size:29
Alignment explanation
Indices: 186723655--186723756 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
186723645 CCTCCGAGCT
** * * *
186723655 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
186723684 TGCACACTTAGTGCCA-ATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
186723712 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
186723741 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
186723757 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 25 0.38
29 40 0.62
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:186723775 original size:57 final size:57
Alignment explanation
Indices: 186723664--186723775 Score: 127
Period size: 57 Copynumber: 2.0 Consensus size: 57
186723654 TCGCACACCC
* * ** * * *
186723664 AGTGCCGTATTTTTCCAGCTTGCACACTTAGTGCCAATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATATGTCCACCACACACACTT
* *
186723721 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATCTCGT-CACCATACACAC
1 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATAT-GTCCACCACACACAC
186723776 GTATTGCCCG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
57 44 0.98
58 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (57 bp):
AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATATGTCCACCACACACACTT
Found at i:186726547 original size:41 final size:41
Alignment explanation
Indices: 186726502--186726619 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
186726492 TGAAAGATAA
186726502 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
186726543 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
186726573 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
186726614 ATGTAG
1 ATGTAG
186726620 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:186726558 original size:71 final size:71
Alignment explanation
Indices: 186726470--186726633 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
186726460 GAGATGTATC
186726470 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
186726535 AGGACA
66 AGGACA
186726541 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
186726606 AGGACA
66 AGGACA
186726612 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
186726634 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:186733651 original size:41 final size:41
Alignment explanation
Indices: 186733606--186733723 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
186733596 TGAAAGATAA
186733606 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
186733647 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
186733677 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
186733718 ATGTAG
1 ATGTAG
186733724 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:186733662 original size:71 final size:71
Alignment explanation
Indices: 186733574--186733737 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
186733564 GAGATGTATC
186733574 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
186733639 AGGACA
66 AGGACA
186733645 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
186733710 AGGACA
66 AGGACA
186733716 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
186733738 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:186737557 original size:80 final size:80
Alignment explanation
Indices: 186737473--186737621 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
186737463 TATGGTAACC
* * * *
186737473 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
186737537 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
186737553 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
186737618 CCGG
66 CCGG
186737622 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:186737563 original size:40 final size:38
Alignment explanation
Indices: 186737514--186737621 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
186737504 ATCACGATTT
*
186737514 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
186737554 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
186737594 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
186737622 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:186742202 original size:41 final size:41
Alignment explanation
Indices: 186742157--186742274 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
186742147 TGAAAGATAA
186742157 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
186742198 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
186742228 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
186742269 ATGTAG
1 ATGTAG
186742275 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:186742213 original size:71 final size:71
Alignment explanation
Indices: 186742125--186742288 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
186742115 GAGATGTATC
186742125 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
186742190 AGGACA
66 AGGACA
186742196 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
186742261 AGGACA
66 AGGACA
186742267 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
186742289 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:186748422 original size:80 final size:80
Alignment explanation
Indices: 186748338--186748486 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
186748328 TATGGTAACC
* * * *
186748338 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
186748402 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
186748418 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
186748483 CCGG
66 CCGG
186748487 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:186748428 original size:40 final size:38
Alignment explanation
Indices: 186748379--186748486 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
186748369 ATCACGATTT
*
186748379 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
186748419 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
186748459 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
186748487 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:186750309 original size:43 final size:43
Alignment explanation
Indices: 186750262--186750361 Score: 105
Period size: 42 Copynumber: 2.3 Consensus size: 43
186750252 TCTCAGACGT
** ** *
186750262 GGTCTTACATGTAATTCAGTATA-GATGCCTCTGTCCCAGACAG
1 GGTCTTACATGTAAAACAG-ATACGATGCCGATGTCCCAAACAG
* * *
186750305 GGTCTTATACG-AAAACAGATACGATGCCGATGTCCCAAACAT
1 GGTCTTACATGTAAAACAGATACGATGCCGATGTCCCAAACAG
186750347 GGTCTTACATGTAAA
1 GGTCTTACATGTAAA
186750362 TTTCAAATCG
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
41 3 0.07
42 30 0.67
43 12 0.27
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (43 bp):
GGTCTTACATGTAAAACAGATACGATGCCGATGTCCCAAACAG
Found at i:186757454 original size:44 final size:43
Alignment explanation
Indices: 186757318--186757468 Score: 139
Period size: 42 Copynumber: 3.5 Consensus size: 43
186757308 CAATGGCGAC
* * * *
186757318 GTCCCAGACGTGGTCTTACATGT-AATTCAGTATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACGTAAATTCA-AATCGATGCCTGT
* * * * *
186757361 GTCCCAGACAGGGTCTTATATG-AAA-ACAGATACGATG-CTGAT
1 GTCCCAGACATGGTCTTACACGTAAATTCAAAT-CGATGCCTG-T
*
186757403 GTCCCAGACATGGTCTTACACGTAAATTTCAAATCGAGGCCTGT
1 GTCCCAGACATGGTCTTACACGTAAA-TTCAAATCGATGCCTGT
*
186757447 GTCCCAGACACGGTCTTACACG
1 GTCCCAGACATGGTCTTACACG
186757469 ATATCTCAGA
Statistics
Matches: 88, Mismatches: 13, Indels: 13
0.77 0.11 0.11
Matches are distributed among these distances:
41 4 0.05
42 27 0.31
43 24 0.27
44 26 0.30
45 7 0.08
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAAATTCAAATCGATGCCTGT
Found at i:186762896 original size:40 final size:40
Alignment explanation
Indices: 186762851--186763017 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
186762841 CGGAATATAA
186762851 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
186762891 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
186762931 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
186762971 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-ATTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
186763010 CCGGATAT
1 CCGGATAT
186763018 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 93 0.88
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:186770840 original size:40 final size:40
Alignment explanation
Indices: 186770795--186770961 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
186770785 CGGAATATAA
186770795 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
186770835 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
186770875 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
186770915 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-ATTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
186770954 CCGGATAT
1 CCGGATAT
186770962 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 93 0.88
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:186777092 original size:23 final size:23
Alignment explanation
Indices: 186777062--186777137 Score: 77
Period size: 23 Copynumber: 3.3 Consensus size: 23
186777052 TTTAGGATTT
186777062 TATGTGATGAATGTGAATGCATA
1 TATGTGATGAATGTGAATGCATA
* * *
186777085 TATGTGAT-AAGGCCGAATGGC-CA
1 TATGTGATGAATG-TGAAT-GCATA
*
186777108 -ATGTGATGAATGTGCATGCATA
1 TATGTGATGAATGTGAATGCATA
186777130 TATGTGAT
1 TATGTGAT
186777138 AAGGCCGAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
21 2 0.05
22 14 0.34
23 23 0.56
24 2 0.05
ACGTcount: A:0.32, C:0.09, G:0.28, T:0.32
Consensus pattern (23 bp):
TATGTGATGAATGTGAATGCATA
Found at i:186777114 original size:22 final size:22
Alignment explanation
Indices: 186777086--186777202 Score: 82
Period size: 22 Copynumber: 5.2 Consensus size: 22
186777076 GAATGCATAT
186777086 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * * *
186777108 ATGTGATGAATG-TGCAT-GCATA
1 ATGTGAT-AAGGCCGAATGGC-CA
186777130 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* *
186777153 ATGTGATGAATGTG-AGCAT-G-CA
1 ATGTGAT-AA-G-GCCGAATGGCCA
186777175 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
186777198 ATGTG
1 ATGTG
186777203 GTGAATATGA
Statistics
Matches: 71, Mismatches: 12, Indels: 24
0.66 0.11 0.22
Matches are distributed among these distances:
20 1 0.01
21 6 0.08
22 31 0.44
23 26 0.37
24 6 0.08
25 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.31, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:186777115 original size:45 final size:45
Alignment explanation
Indices: 186777063--186777247 Score: 254
Period size: 45 Copynumber: 4.1 Consensus size: 45
186777053 TTAGGATTTT
186777063 ATGTGATGAATGTGAATGCAT-ATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-GCATCATATGTGATAAGGCCGAATGGCCA
*
186777108 ATGTGATGAATGTGCATGCAT-ATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTG-AAGCATCATATGTGATAAGGCCGAATGGCCA
186777153 ATGTGATGAATGTG-AGCATGCATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAGCAT-CATATGTGATAAGGCCGAATGGCCA
* * * *
186777198 ATGTGGTGAATATGAA-CATGCATATGTGGTAAAGCCGAATGG-CA
1 ATGTGATGAATGTGAAGCAT-CATATGTGATAAGGCCGAATGGCCA
186777242 ATGTGA
1 ATGTGA
186777248 AATATATATA
Statistics
Matches: 129, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
43 4 0.03
44 7 0.05
45 116 0.90
46 2 0.02
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (45 bp):
ATGTGATGAATGTGAAGCATCATATGTGATAAGGCCGAATGGCCA
Found at i:186777292 original size:92 final size:92
Alignment explanation
Indices: 186777084--186777350 Score: 285
Period size: 90 Copynumber: 2.9 Consensus size: 92
186777074 GTGAATGCAT
* * *
186777084 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG--CATGCATATATGTGATAAGGCCGAA
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC--ATATGTGGTAAAGCCGAA
* *
186777147 TGGCCAATGTG--AT-GAATGTGAGCATGC
64 TGG-CAATGTGAAATATAATATGAGCATGC
*
186777174 ATATGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATGTGGTAAAGCCGAATG
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATGTGGTAAAGCCGAATG
186777239 GCAATGTGAAATATATATATGAG-ATGC
66 GCAATGTGAAATATA-ATATGAGCATGC
* * * * * *
186777266 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
1 ATATGTGATAAGGCCGAATGGCCAATGTG--AT-GA-ATATGA-ACATGCATATGTGGTAAAGCC
*
186777331 GAATGGCTAGTGTGAAATAT
61 GAATGGC-AATGTGAAATAT
186777351 GTAGGCGATG
Statistics
Matches: 151, Mismatches: 14, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
89 7 0.05
90 55 0.36
91 2 0.01
92 36 0.24
93 6 0.04
94 1 0.01
95 1 0.01
96 6 0.04
97 26 0.17
98 11 0.07
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.27
Consensus pattern (92 bp):
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATGTGGTAAAGCCGAATG
GCAATGTGAAATATAATATGAGCATGC
Found at i:186777295 original size:48 final size:48
Alignment explanation
Indices: 186777165--186777350 Score: 222
Period size: 50 Copynumber: 3.9 Consensus size: 48
186777155 GTGATGAATG
* * * * *
186777165 TGAGCATGCATATGTGATAAGGCCGAATGGCCAATGTG--GT-GA-ATA
1 TGAGAATGCATATGTGGTAAAGCCGAATGG-CAATGTGAAATATATATA
186777210 TGA-ACATGCATATGTGGTAAAGCCGAATGGCAATGTGAAATATATATA
1 TGAGA-ATGCATATGTGGTAAAGCCGAATGGCAATGTGAAATATATATA
186777258 TGAG-ATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATA
1 TGAGAATGCATATGTGGTAAAGCCGAATGG-CAATGTGAAATATATATA
* *
186777306 TGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 TGAGA-ATGCATATGTGGTAAAGCCGAATGGC-AATGTGAAATAT
186777351 GTAGGCGATG
Statistics
Matches: 124, Mismatches: 7, Indels: 15
0.85 0.05 0.10
Matches are distributed among these distances:
44 7 0.06
45 26 0.21
46 1 0.01
47 26 0.21
48 28 0.23
49 1 0.01
50 35 0.28
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.28
Consensus pattern (48 bp):
TGAGAATGCATATGTGGTAAAGCCGAATGGCAATGTGAAATATATATA
Found at i:186777368 original size:50 final size:50
Alignment explanation
Indices: 186777219--186777374 Score: 157
Period size: 50 Copynumber: 3.2 Consensus size: 50
186777209 ATGAACATGC
186777219 ATATGTGGTAAAGCCGAATGGC-AATGTGAAATATATAT-ATGA-GATGC--
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA-GATG-TGCGT
*
186777266 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATAT--GT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATGTGCGT
* * * *
186777316 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGCGATGTGCGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTGCGT
186777366 ATATTGTGG
1 ATA-TGTGG
186777375 CCGAACGACC
Statistics
Matches: 91, Mismatches: 6, Indels: 20
0.78 0.05 0.17
Matches are distributed among these distances:
47 21 0.23
48 17 0.19
49 4 0.04
50 42 0.46
51 7 0.08
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (50 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTGCGT
Found at i:186777608 original size:37 final size:37
Alignment explanation
Indices: 186777500--186777608 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
186777490 GGAAATATAT
*
186777500 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
186777537 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
186777574 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
186777609 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:186779104 original size:119 final size:119
Alignment explanation
Indices: 186778878--186779186 Score: 505
Period size: 119 Copynumber: 2.6 Consensus size: 119
186778868 GAGAATTGAG
186778878 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGC-AAGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGCTAAGTCCCGA
186778942 AGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
66 AGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
186778996 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT-CGGACTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG-CTAAGTCCCG
* *
186779060 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
65 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** * * * *
186779115 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC-GGCTAAGTCCCG
186779180 AAGAGCA
65 AAGAGCA
186779187 ATCATGCTGG
Statistics
Matches: 178, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
117 3 0.02
118 51 0.29
119 105 0.59
120 17 0.10
121 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGCTAAGTCCCGA
AGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:186779180 original size:159 final size:158
Alignment explanation
Indices: 186778878--186779186 Score: 512
Period size: 159 Copynumber: 1.9 Consensus size: 158
186778868 GAGAATTGAG
*
186778878 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGCAAGTCCCGAA
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGCAAGTCCCGAA
**
186778943 GAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCC
66 GAGCATTCGTGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTCGTGCTAGTGATATATCC
186779008 GGGCTAAGTCCCGAAGAGCATTCGTGCT
131 GGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
186779036 AGTGATGTAT-CGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCG
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC-GGC-AAGTCCCG
* * *
186779100 AAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATAT
64 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTCGTGCTAGTGATATAT
*
186779165 CCGGGCTAGGTCCCGAAGAGCA
129 CCGGGCTAAGTCCCGAAGAGCA
186779187 ATCATGCTGG
Statistics
Matches: 140, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
157 40 0.29
158 12 0.09
159 88 0.63
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (158 bp):
AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGCAAGTCCCGAA
GAGCATTCGTGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTCGTGCTAGTGATATATCC
GGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:186779198 original size:40 final size:40
Alignment explanation
Indices: 186778878--186779186 Score: 498
Period size: 40 Copynumber: 7.8 Consensus size: 40
186778868 GAGAATTGAG
186778878 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
186778918 AGTGATGTATCC-GGC-AAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
186778956 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
186778996 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
186779036 AGTGATGTAT-CGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
186779075 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
186779115 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
186779155 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
186779187 ATCATGCTGG
Statistics
Matches: 249, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
38 34 0.14
39 44 0.18
40 171 0.69
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:186783442 original size:25 final size:25
Alignment explanation
Indices: 186783367--186783442 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
186783357 ATGCATATAT
186783367 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
186783392 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
186783414 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
186783439 GTGA
1 GTGA
186783443 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:186783471 original size:92 final size:94
Alignment explanation
Indices: 186783363--186783584 Score: 235
Period size: 92 Copynumber: 2.4 Consensus size: 94
186783353 TGTGATGCAT
* * * *
186783363 ATATGTGATAAGGCCGAATGGCCAATGTG-ATGA-ATGTGAG-CATGCATATGTGTGATAAGGCC
1 ATATGTGGTAAAGCCGAATGGCCAATGTGAAT-ATATATGAGACATGCATATGTG-G-TAAAGCC
*
186783425 GAATGGCCAATGTG-GTGA-ATATGA-ACATGC
63 GAATGGCCAATGTGAAT-ATATATGAGACATGC
*
186783455 ATATGTGGTAAAGCCGAATGG-CAATGTGAAATATATATGAGATATGCATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCCAATGTG-AATATATATGAGACATGCATATGTGGTAAAGCCGA
* * *
186783519 ATGGTCAATGTGAAATATATATGAGATATGT
65 ATGGCCAATGTG-AATATATATGAGACATGC
* *
186783550 ATATGTGGTAAAGCCGAATGGCTAGTGTGAA-ATAT
1 ATATGTGGTAAAGCCGAATGGCCAATGTGAATATAT
186783585 GTAGGCGATG
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
91 7 0.06
92 39 0.35
93 10 0.09
94 22 0.20
95 27 0.25
96 5 0.05
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (94 bp):
ATATGTGGTAAAGCCGAATGGCCAATGTGAATATATATGAGACATGCATATGTGGTAAAGCCGAA
TGGCCAATGTGAATATATATGAGACATGC
Found at i:186783547 original size:48 final size:47
Alignment explanation
Indices: 186783363--186783584 Score: 235
Period size: 47 Copynumber: 4.7 Consensus size: 47
186783353 TGTGATGCAT
* * *
186783363 ATATGTGATAAGGCCGAATGGCCAATGTG--ATGA-ATGTGAG-CATGC
1 ATATGTGGTAAAGCCGAATGG-CAATGTGAAAT-ATATATGAGACATGC
* *
186783408 ATATGTGTGATAAGGCCGAATGGCCAATGTG--GTGA-ATATGA-ACATGC
1 ATATGTG-G-TAAAGCCGAATGG-CAATGTGAAAT-ATATATGAGACATGC
*
186783455 ATATGTGGTAAAGCCGAATGGCAATGTGAAATATATATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCAATGTGAAATATATATGAGACATGC
* *
186783502 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGG-CAATGTGAAATATATATGAGACATGC
*
186783550 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 ATATGTGGTAAAGCCGAATGGC-AATGTGAAATAT
186783585 GTAGGCGATG
Statistics
Matches: 160, Mismatches: 8, Indels: 15
0.87 0.04 0.08
Matches are distributed among these distances:
44 7 0.04
45 20 0.12
46 8 0.05
47 68 0.43
48 57 0.36
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (47 bp):
ATATGTGGTAAAGCCGAATGGCAATGTGAAATATATATGAGACATGC
Found at i:186783624 original size:95 final size:94
Alignment explanation
Indices: 186783455--186783628 Score: 206
Period size: 95 Copynumber: 1.8 Consensus size: 94
186783445 ATGAACATGC
* *
186783455 ATATGTGGTAAAGCCGAATGGCAATGTGAAATATATATGAGATATGCATATGTGGTAAAGCCGAA
1 ATATGTGGTAAAGCCGAATGGCAATGTGAAATATATAGGAGATATGCATATATGGT-AAGCCGAA
* **
186783520 TGGTCAATGTGAAATATATATGAGATATGT
65 CGACCAATGTGAAATATATATGAGATATGT
* * * * * * *
186783550 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGCGATGTGCGTATATTGT-GGCCGAA
1 ATATGTGGTAAAGCCGAATGGC-AATGTGAAATATATAGGAGATATGCATATATGGTAAGCCGAA
186783614 CGACCAAATGTGAAA
65 CGACC-AATGTGAAA
186783629 GGTGTGTATT
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
94 8 0.12
95 31 0.48
96 26 0.40
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.28
Consensus pattern (94 bp):
ATATGTGGTAAAGCCGAATGGCAATGTGAAATATATAGGAGATATGCATATATGGTAAGCCGAAC
GACCAATGTGAAATATATATGAGATATGT
Found at i:186783842 original size:37 final size:37
Alignment explanation
Indices: 186783734--186783842 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
186783724 GGAAATATAT
*
186783734 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
186783771 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
186783808 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
186783843 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:186798515 original size:29 final size:29
Alignment explanation
Indices: 186798483--186798555 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
186798473 CTTCGAGCTC
*
186798483 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
186798512 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
186798541 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
186798556 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:186806651 original size:29 final size:29
Alignment explanation
Indices: 186806619--186806691 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
186806609 CTTCGAGCTC
*
186806619 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
186806648 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
186806677 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
186806692 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:186817430 original size:79 final size:80
Alignment explanation
Indices: 186817268--186817451 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 80
186817258 AATTGAATGA
* * * *
186817268 TATCCGGGCTAAGTCCCGA--AGATTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
186817331 TTGTGCTAGTGGCTAC
66 TTGTGCGAGT-GCTAC
*
186817347 -ATCCGGGCTAAGTCCCGAGGACATTTATGCTAG-TATTATATCCGGGCTAAGACCCGAAGGC-A
1 TATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
186817409 TTCGTGCGAGT-CATTC
66 TT-GTGCGAGTGC-TAC
*
186817425 TATCCGGGCTAAGACCCGAAGG-CATTT
1 TATCCGGGCTAAGTCCCG-AGGACATTT
186817452 GTGCAAATCG
Statistics
Matches: 91, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 23 0.25
79 54 0.59
80 13 0.14
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCGAGTGCTAC
Found at i:186817471 original size:40 final size:38
Alignment explanation
Indices: 186817304--186817457 Score: 148
Period size: 40 Copynumber: 3.9 Consensus size: 38
186817294 TGCTGGAAAT
* * * *
186817304 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT--A
* * * *
186817344 TACATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTA
1 TATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTA
* *
186817382 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-A
*
186817422 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
186817458 ATCGTGATAT
Statistics
Matches: 96, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 31 0.32
40 65 0.68
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (38 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTA
Found at i:186819700 original size:2 final size:2
Alignment explanation
Indices: 186819693--186819723 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
186819683 TTTAGATCTT
186819693 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
186819724 TAATTCTCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:186819936 original size:24 final size:24
Alignment explanation
Indices: 186819899--186819997 Score: 94
Period size: 24 Copynumber: 4.0 Consensus size: 24
186819889 ATGATTTTCT
186819899 TTTTATATACATTATTTATTTTAAAC
1 TTTTATAT--ATTATTTATTTTAAAC
* *
186819925 TTTTACATATTATTTATTTCAAA-
1 TTTTATATATTATTTATTTTAAAC
* * *
186819948 TTTATATACATTATGTA-GTTAAAC
1 TTT-TATATATTATTTATTTTAAAC
186819972 TATTTTATATATTATTTATTTTAAAC
1 --TTTTATATATTATTTATTTTAAAC
186819998 CCTCTTTATT
Statistics
Matches: 58, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
23 7 0.12
24 24 0.41
25 11 0.19
26 16 0.28
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.56
Consensus pattern (24 bp):
TTTTATATATTATTTATTTTAAAC
Found at i:186819988 original size:49 final size:48
Alignment explanation
Indices: 186819900--186819992 Score: 134
Period size: 49 Copynumber: 1.9 Consensus size: 48
186819890 TGATTTTCTT
* *
186819900 TTTATATACATTATTTATTTTAAACTTTTACATATTATTTATTTCAAA
1 TTTATATACATTATGTATGTTAAACTTTTACATATTATTTATTTCAAA
*
186819948 TTTATATACATTATGTA-GTTAAACTATTTTATATATTATTTATTT
1 TTTATATACATTATGTATGTTAAAC--TTTTACATATTATTTATTT
186819993 TAAACCCTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
47 6 0.15
48 16 0.40
49 18 0.45
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.57
Consensus pattern (48 bp):
TTTATATACATTATGTATGTTAAACTTTTACATATTATTTATTTCAAA
Found at i:186833950 original size:15 final size:16
Alignment explanation
Indices: 186833920--186833952 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
186833910 TTCAATTTAA
*
186833920 TTCAAATTTCATACTT
1 TTCAAAATTCATACTT
186833936 TTCAAAATT-ATACTT
1 TTCAAAATTCATACTT
186833951 TT
1 TT
186833953 ACCCCTAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52
Consensus pattern (16 bp):
TTCAAAATTCATACTT
Found at i:186836289 original size:40 final size:40
Alignment explanation
Indices: 186836232--186836379 Score: 199
Period size: 40 Copynumber: 3.7 Consensus size: 40
186836222 TGAATGATAC
* * * *
186836232 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
186836272 CCGGGTTAAGACTCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
186836312 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
186836352 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGTTAAGACCCGAAGGCATTTGTGC
186836380 TTGTGGTTAT
Statistics
Matches: 96, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 94 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:186837777 original size:68 final size:70
Alignment explanation
Indices: 186837705--186837902 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
186837695 ACACCCTGTA
* * * *
186837705 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
186837767 ATAAAT
65 ATAAAT
*
186837773 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
186837838 ATAAAT
65 ATAAAT
*
186837844 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
186837903 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:186837816 original size:41 final size:41
Alignment explanation
Indices: 186837771--186837888 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
186837761 TGAAAGATAA
186837771 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
186837812 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
186837842 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
186837883 ATGTAG
1 ATGTAG
186837889 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:186837828 original size:71 final size:71
Alignment explanation
Indices: 186837739--186837902 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
186837729 GAGATGTATC
186837739 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
186837804 AGGACA
66 AGGACA
186837810 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
186837875 AGGACA
66 AGGACA
186837881 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
186837903 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:186845347 original size:68 final size:70
Alignment explanation
Indices: 186845275--186845472 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
186845265 ACACCCTGTA
* * * *
186845275 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
186845337 ATAAAT
65 ATAAAT
*
186845343 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
186845408 ATAAAT
65 ATAAAT
*
186845414 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
186845473 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:186845386 original size:41 final size:41
Alignment explanation
Indices: 186845341--186845458 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
186845331 TGAAAGATAA
186845341 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
186845382 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
186845412 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
186845453 ATGTAG
1 ATGTAG
186845459 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:186845398 original size:71 final size:71
Alignment explanation
Indices: 186845309--186845472 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
186845299 GAGATGTATC
186845309 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
186845374 AGGACA
66 AGGACA
186845380 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
186845445 AGGACA
66 AGGACA
186845451 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
186845473 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:186847072 original size:40 final size:40
Alignment explanation
Indices: 186846944--186847074 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
186846934 TATGCTGGAA
* * * *
186846944 ATTATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
186846984 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
186847024 ATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
186847064 ATTATATCCGG
1 ATTATATCCGG
186847075 TTATATCCGA
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:186848464 original size:15 final size:17
Alignment explanation
Indices: 186848431--186848464 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
186848421 TACACAAATT
186848431 ATATATATTAATTTATA
1 ATATATATTAATTTATA
186848448 ATATA-ATTAATTT-TA
1 ATATATATTAATTTATA
186848463 AT
1 AT
186848465 TTTAATCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 8 0.47
17 5 0.29
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
ATATATATTAATTTATA
Found at i:186851850 original size:124 final size:124
Alignment explanation
Indices: 186851628--186851852 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
186851618 GAATTATGTG
* * * * * * *
186851628 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
186851693 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
186851752 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
186851817 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
186851853 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:186851974 original size:40 final size:40
Alignment explanation
Indices: 186851847--186851976 Score: 149
Period size: 40 Copynumber: 3.2 Consensus size: 40
186851837 TTGCTGGAAA
* *
186851847 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGC-GG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGA-CTGG
* * * *
186851887 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGACTGG
*
186851927 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAC-TGG
186851967 TTATATCCGG
1 TTATATCCGG
186851977 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
39 4 0.05
40 71 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGACTGG
Found at i:186853401 original size:40 final size:39
Alignment explanation
Indices: 186853346--186853499 Score: 195
Period size: 40 Copynumber: 3.9 Consensus size: 39
186853336 GGTTCGGGGT
*
186853346 GTTAC-AATATCCGGACTAAGATCCGAAGGCATTAGTGCGA
1 GTTACTAA-ATCCGGACTAAG-TCCGAAGGCATTTGTGCGA
186853386 GTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGA
1 GTTACTAAATCCGGACTAAG-TCCGAAGGCATTTGTGCGA
**
186853426 GTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA
1 GTTACTAAATCCGGACTAAGT-CCGAAGGCATTTGTGCGA
* * *
186853466 GTTACTATAA-CCGGGCTATGTCCCAAGGCATTTG
1 GTTACTA-AATCCGGACTAAGTCCGAAGGCATTTG
186853500 AATGAGTAGC
Statistics
Matches: 105, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
39 13 0.12
40 88 0.84
41 4 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (39 bp):
GTTACTAAATCCGGACTAAGTCCGAAGGCATTTGTGCGA
Found at i:186861661 original size:40 final size:40
Alignment explanation
Indices: 186861487--186861672 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
186861477 TCGAATGATG
* * *
186861487 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
186861527 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
186861567 TCCGGACTAAGAT-ACGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
186861607 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
186861648 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
186861673 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 117 0.92
41 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:186863652 original size:27 final size:27
Alignment explanation
Indices: 186863621--186863770 Score: 178
Period size: 27 Copynumber: 5.6 Consensus size: 27
186863611 TTAGTTTACC
* *
186863621 AAATTACTGAAATACCCTCAACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
186863648 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
** *
186863675 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
186863702 AAATTACAGAAATACCCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTGTA
186863729 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
186863756 AAATTACTGAAATAC
1 AAATTACTGAAATAC
186863771 TCCTGTAAGA
Statistics
Matches: 105, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.04
27 96 0.91
28 5 0.05
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:186863769 original size:81 final size:82
Alignment explanation
Indices: 186863621--186863774 Score: 204
Period size: 81 Copynumber: 1.9 Consensus size: 82
186863611 TTAGTTTACC
* *
186863621 AAATTACTGAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
1 AAATTACAGAAATACCCTCAACTTGCAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
186863686 ATA-TCCTCGATTTGTA
66 ATACTCCTCGATTTGTA
** * * * **
186863702 AAATTACAGAAATACCCTCAGTTTGCAAAATTACTGAAA-TACCCTCGATTTGTAAAATTACTGA
1 AAATTACAGAAATACCCTCAACTTGCAAAATTAC-CAAAGTACCCCCGATTTATAAAATTACCCA
186863766 AATACTCCT
65 AATACTCCT
186863775 GTAAGATAGA
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 55 0.89
82 7 0.11
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (82 bp):
AAATTACAGAAATACCCTCAACTTGCAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
ATACTCCTCGATTTGTA
Found at i:186863788 original size:54 final size:51
Alignment explanation
Indices: 186863621--186863789 Score: 135
Period size: 54 Copynumber: 3.1 Consensus size: 51
186863611 TTAGTTTACC
* * * * *
186863621 AAATTACTGAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCCG-ATTTAT
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACGAAA-TA-CCCTGTA-TGAT
** * *
186863674 AAAATTACCCAAATATCCTCGATTTGTAAAATTACAGAAATACCCTCAGTTTGCA-
1 -AAATTACTGAAATACCCTCGATTTGTAAAATTAC-GAAATACCCT--GTATG-AT
*
186863729 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACTCCTGTAAGAT
1 AAATTACTGAAATACCCTCGATTTGTAAAATTAC-GAAATAC-CCTGTATGAT
186863782 AGAATTAC
1 A-AATTAC
186863790 CATTTTACCC
Statistics
Matches: 92, Mismatches: 15, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
52 1 0.01
53 7 0.08
54 75 0.82
55 8 0.09
56 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (51 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTACGAAATACCCTGTATGAT
Found at i:186863814 original size:27 final size:27
Alignment explanation
Indices: 186863782--186863888 Score: 151
Period size: 27 Copynumber: 4.0 Consensus size: 27
186863772 CCTGTAAGAT
186863782 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * * *
186863809 AAAATTATCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
* *
186863836 AGAATTACTATTTTACCCTCAATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
186863863 AGAATTACCGTTTTACCCTCGATTTA
1 AGAATTACCATTTTACCCTCGATTTA
186863889 TTTTACCCTC
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:186863838 original size:54 final size:54
Alignment explanation
Indices: 186863780--186863966 Score: 207
Period size: 54 Copynumber: 3.7 Consensus size: 54
186863770 CTCCTGTAAG
*
186863780 ATAGAATTACCATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCAATTTACAAAATTATCGTTTTACCCTCGATTT
* * *
186863834 ATAGAATTACTATTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCG----
1 ATAGAATTACCATTTTACCCTCAATTTACAAAATTATCGTTTTACCCTCGATTT
* * *
186863884 AT----TT---ATTTTACCCTCGATTTACAGAATTATCGTCTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCAATTTACAAAATTATCGTTTTACCCTCGATTT
* * *
186863931 ACAGAATTACCATTTTACCCTCAATGTAAAAAATTA
1 ATAGAATTACCATTTTACCCTCAATTTACAAAATTA
186863967 CTGAAATACC
Statistics
Matches: 110, Mismatches: 12, Indels: 22
0.76 0.08 0.15
Matches are distributed among these distances:
43 36 0.33
46 2 0.02
47 1 0.01
50 2 0.02
51 2 0.02
54 67 0.61
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.39
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTCAATTTACAAAATTATCGTTTTACCCTCGATTT
Found at i:186863891 original size:43 final size:43
Alignment explanation
Indices: 186863844--186863931 Score: 149
Period size: 43 Copynumber: 2.0 Consensus size: 43
186863834 ATAGAATTAC
*
186863844 TATTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCGATT
1 TATTTTACCCTCAATTTACAGAATTACCGTCTTACCCTCGATT
* *
186863887 TATTTTACCCTCGATTTACAGAATTATCGTCTTACCCTCGATT
1 TATTTTACCCTCAATTTACAGAATTACCGTCTTACCCTCGATT
186863930 TA
1 TA
186863932 CAGAATTACC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.25, C:0.25, G:0.08, T:0.42
Consensus pattern (43 bp):
TATTTTACCCTCAATTTACAGAATTACCGTCTTACCCTCGATT
Found at i:186863892 original size:16 final size:16
Alignment explanation
Indices: 186863873--186863904 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
186863863 AGAATTACCG
186863873 TTTTACCCTCGATTTA
1 TTTTACCCTCGATTTA
186863889 TTTTACCCTCGATTTA
1 TTTTACCCTCGATTTA
186863905 CAGAATTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.25, G:0.06, T:0.50
Consensus pattern (16 bp):
TTTTACCCTCGATTTA
Found at i:186863922 original size:70 final size:70
Alignment explanation
Indices: 186863819--186863952 Score: 207
Period size: 70 Copynumber: 1.9 Consensus size: 70
186863809 AAAATTATCG
* * *
186863819 TTTTACCCTCGATTTATAGAATTACTATTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCG
1 TTTTACCCTCGATTTACAGAATTACTATCTTACCCTCAATTTACAGAATTACCATTTTACCCTCG
186863884 ATTTA
66 ATTTA
* *
186863889 TTTTACCCTCGATTTACAGAATTA-TCGTCTTACCCTCGATTTACAGAATTACCATTTTACCCTC
1 TTTTACCCTCGATTTACAGAATTACT-ATCTTACCCTCAATTTACAGAATTACCATTTTACCCTC
186863953 AATGTAAAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
69 1 0.02
70 57 0.98
ACGTcount: A:0.26, C:0.25, G:0.07, T:0.41
Consensus pattern (70 bp):
TTTTACCCTCGATTTACAGAATTACTATCTTACCCTCAATTTACAGAATTACCATTTTACCCTCG
ATTTA
Done.