Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 597 of 770
Found at i:186863948 original size:27 final size:27
Alignment explanation
Indices: 186863888--186863952 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
186863878 CCCTCGATTT
*
186863888 ATTTTACCCTCGATTTACAGAATTATC
1 ATTTTACCCTCGATTTACAGAATTACC
* *
186863915 GTCTTACCCTCGATTTACAGAATTACC
1 ATTTTACCCTCGATTTACAGAATTACC
186863942 ATTTTACCCTC
1 ATTTTACCCTC
186863953 AATGTAAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.38
Consensus pattern (27 bp):
ATTTTACCCTCGATTTACAGAATTACC
Found at i:186863966 original size:97 final size:97
Alignment explanation
Indices: 186863791--186863967 Score: 291
Period size: 97 Copynumber: 1.8 Consensus size: 97
186863781 TAGAATTACC
* * *
186863791 ATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTC
1 ATTTTACCCTCGATTTACAAAATTATCGTCTTACCCTCGATTTACAGAATTACCATTTTACCCTC
* * *
186863856 AATTTACAGAATTACCGTTTTACCCTCGATTT
66 AATGTAAAAAATTACCGTTTTACCCTCGATTT
*
186863888 ATTTTACCCTCGATTTACAGAATTATCGTCTTACCCTCGATTTACAGAATTACCATTTTACCCTC
1 ATTTTACCCTCGATTTACAAAATTATCGTCTTACCCTCGATTTACAGAATTACCATTTTACCCTC
186863953 AATGTAAAAAATTAC
66 AATGTAAAAAATTAC
186863968 TGAAATACCC
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
97 73 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (97 bp):
ATTTTACCCTCGATTTACAAAATTATCGTCTTACCCTCGATTTACAGAATTACCATTTTACCCTC
AATGTAAAAAATTACCGTTTTACCCTCGATTT
Found at i:186864004 original size:54 final size:54
Alignment explanation
Indices: 186863919--186864058 Score: 147
Period size: 54 Copynumber: 2.6 Consensus size: 54
186863909 ATTATCGTCT
* * * *** * **
186863919 TACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAA-AAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTCAAT-CAATAAAATTACCAAAA
*
186863973 TACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAATAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTCAATCAATAAAATTACCAAAA
* **
186864027 TACCATTGGTTTGTAAAATTACCAAAATACCC
1 TACCCTTGGTTTACAAAATTACCAAAATACCC
186864059 CTGCTTTGTG
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 2 0.03
54 70 0.97
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.29
Consensus pattern (54 bp):
TACCCTTGGTTTACAAAATTACCAAAATACCCTCAATCAATAAAATTACCAAAA
Found at i:186864066 original size:27 final size:27
Alignment explanation
Indices: 186863960--186864085 Score: 101
Period size: 27 Copynumber: 4.7 Consensus size: 27
186863950 CTCAATGTAA
** * *
186863960 AAAATTACTGAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTAT
* **
186863987 AAAATTACCAAAATA-CCCTCGATCAAT
1 AAAATTACCAAAATACCCCT-GGTTTAT
** *
186864014 AAAATTACCAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTAT
* *
186864041 AAAATTACCAAAATACCCCTGCTTTGT
1 AAAATTACCAAAATACCCCTGGTTTAT
** *
186864068 GTAATTACCGAAATACCC
1 AAAATTACCAAAATACCC
186864086 TTGTAGGGTA
Statistics
Matches: 78, Mismatches: 19, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
26 3 0.04
27 73 0.94
28 2 0.03
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTAT
Found at i:186864100 original size:27 final size:27
Alignment explanation
Indices: 186864070--186864347 Score: 412
Period size: 27 Copynumber: 10.3 Consensus size: 27
186864060 TGCTTTGTGT
*
186864070 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
186864097 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
186864124 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
186864151 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
186864178 AATAACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
186864205 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
186864232 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * **
186864259 AATGATCGAAATACCTTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
186864286 AAATACCGAAATACCCTTATAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
186864313 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
186864340 AATTACCG
1 AATTACCG
186864348 TTTTGCCCCT
Statistics
Matches: 234, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 234 1.00
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:186864800 original size:31 final size:31
Alignment explanation
Indices: 186864748--186864850 Score: 165
Period size: 31 Copynumber: 3.4 Consensus size: 31
186864738 TTGCATTCAC
**
186864748 ATTCTGATTTTGA-T-TGTTACCTGATACCG
1 ATTCTGATTTTGATTCTGTTACCTGATACTA
*
186864777 ATTCTGATTTTGATTCTGTTACCTGAGACTA
1 ATTCTGATTTTGATTCTGTTACCTGATACTA
186864808 ATTCTGATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTTTGATTCTGTTACCTGATACTA
186864839 ATTCTGATTTTG
1 ATTCTGATTTTG
186864851 TCACCTAATT
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
29 13 0.19
30 1 0.01
31 54 0.79
ACGTcount: A:0.21, C:0.16, G:0.16, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTA
Found at i:186867673 original size:28 final size:28
Alignment explanation
Indices: 186867581--186867685 Score: 119
Period size: 27 Copynumber: 3.9 Consensus size: 28
186867571 AGGAAGCGTC
* *
186867581 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACGATTATCTGTAT
* *
186867608 CTGGTGGCTCTACCAC-ATATTTCTGT-T
1 CTGGTGGCTCTGCCACGAT-TATCTGTAT
186867635 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACGATTATCTGTAT
* *
186867663 CTGGTGACTCTGTCACG-TTATCT
1 CTGGTGGCTCTGCCACGATTATCT
186867686 ATTCTGGCAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
26 2 0.03
27 47 0.70
28 18 0.27
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACGATTATCTGTAT
Found at i:186867691 original size:54 final size:54
Alignment explanation
Indices: 186867581--186867692 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
186867571 AGGAAGCGTC
* * *
186867581 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTATT
* * ** *
186867635 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACGT-TATCTATT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTACCACATATATCTATT
186867689 CTGG
1 CTGG
186867693 CAACCATGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 33 0.67
55 16 0.33
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTATT
Found at i:186869562 original size:14 final size:14
Alignment explanation
Indices: 186869543--186869580 Score: 76
Period size: 14 Copynumber: 2.7 Consensus size: 14
186869533 TTGTTGAGTA
186869543 TGAGGCTGAGTTTC
1 TGAGGCTGAGTTTC
186869557 TGAGGCTGAGTTTC
1 TGAGGCTGAGTTTC
186869571 TGAGGCTGAG
1 TGAGGCTGAG
186869581 CCGGTATGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.16, C:0.13, G:0.39, T:0.32
Consensus pattern (14 bp):
TGAGGCTGAGTTTC
Found at i:186873626 original size:40 final size:40
Alignment explanation
Indices: 186873581--186873710 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
186873571 CGGAATACAA
186873581 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
186873621 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
186873661 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
186873701 CCGGATATAA
1 CCGGATATAA
186873711 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:186881603 original size:40 final size:40
Alignment explanation
Indices: 186881558--186881687 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
186881548 CGGAATACAA
186881558 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
186881598 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
186881638 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
186881678 CCGGATATAA
1 CCGGATATAA
186881688 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:186890593 original size:40 final size:40
Alignment explanation
Indices: 186890516--186890735 Score: 288
Period size: 40 Copynumber: 5.5 Consensus size: 40
186890506 ACCCAAGTAT
* *
186890516 CTTCGGGAT-TTAG-CCGGATATA-ACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
*
186890555 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
186890595 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
186890635 CTTCGGGTCTTAGCCCGGATATAG-CAACT-CCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
186890674 CTTCGGATCTTAGTCCGGATATAGTCACTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
186890714 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
186890736 CATTCGAATA
Statistics
Matches: 159, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
38 1 0.01
39 46 0.29
40 111 0.70
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:186890705 original size:79 final size:80
Alignment explanation
Indices: 186890516--186890735 Score: 299
Period size: 79 Copynumber: 2.8 Consensus size: 80
186890506 ACCCAAGTAT
* *
186890516 CTTCGGGAT-TTAGCCGGATATA-ACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGATCTTAGCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
* *
186890579 TCACTAGCATAAATGC
65 TCACTACCACAAATGC
*
186890595 CTTCGGGA-CTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGATCTTAG-CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
186890659 -CAACT-CCACAAATGC
65 TC-ACTACCACAAATGC
* *
186890674 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGATCTTAG-CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
186890736 CATTCGAATA
Statistics
Matches: 127, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
78 3 0.02
79 75 0.59
80 48 0.38
81 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGGATCTTAGCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTACCACAAATGC
Found at i:186890727 original size:119 final size:119
Alignment explanation
Indices: 186890516--186890735 Score: 363
Period size: 119 Copynumber: 1.8 Consensus size: 119
186890506 ACCCAAGTAT
*
186890516 CTTCGGGATTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC
1 CTTCGGGATTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTC
* *
186890581 ACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
66 ACTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
* *
186890635 CTTCGGG-TCTTAGCCCGGATATAGCAACTC-CACAAATGCCTTCGGATCTTAGTCCGGATATAG
1 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAG
186890698 TCACTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
64 TCACTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
186890736 CATTCGAATA
Statistics
Matches: 94, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
118 1 0.01
119 78 0.83
120 15 0.16
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (119 bp):
CTTCGGGATTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTC
ACTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
Found at i:186898716 original size:40 final size:40
Alignment explanation
Indices: 186898687--186898877 Score: 296
Period size: 40 Copynumber: 4.8 Consensus size: 40
186898677 ATAACAACTC
186898687 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* * *
186898727 GCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
*
186898767 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAG-CAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC-ACTA
* *
186898807 GCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
*
186898847 GCACAAA-GCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
186898878 CATTCGAATA
Statistics
Matches: 136, Mismatches: 13, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
39 22 0.16
40 113 0.83
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
Found at i:186898774 original size:80 final size:80
Alignment explanation
Indices: 186898659--186898877 Score: 306
Period size: 80 Copynumber: 2.8 Consensus size: 80
186898649 ACCCAAGTAT
* *
186898659 CTTCGGAT-TTAG-CCGGATATA-ACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGATCTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
186898721 TC-ACTAGCATAAATGC
65 -CAACTAGCACAAATGC
*
186898737 CTTCGGGA-CTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTC-GGATCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
186898801 CAACTCGCACAAATGC
65 CAACTAGCACAAATGC
* *
186898817 CTTCGGATCTTAGTCCGGATATAGTCACTAGCACAAA-GCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
186898878 CATTCGAATA
Statistics
Matches: 127, Mismatches: 8, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
78 4 0.03
79 34 0.27
80 88 0.69
81 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
AACTAGCACAAATGC
Found at i:186908735 original size:27 final size:28
Alignment explanation
Indices: 186908679--186908747 Score: 113
Period size: 27 Copynumber: 2.5 Consensus size: 28
186908669 TAATTTGTAC
186908679 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
186908707 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
186908734 AGCACTAAGTGTGC
1 AGCACTAAGTGTGC
186908748 ATACTCACTA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:186916716 original size:27 final size:27
Alignment explanation
Indices: 186916645--186916740 Score: 124
Period size: 29 Copynumber: 3.5 Consensus size: 27
186916635 CATGAGAATG
* * *
186916645 GCACTAAGTGTGCGGGTTTAATTTGTACA
1 GCACTAAGTGTGCGAGTTTGA-TT-TATA
186916674 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATT-TATA
186916702 GCACT-AGTGTGCGAG-TTGATTTATA
1 GCACTAAGTGTGCGAGTTTGATTTATA
186916727 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
186916741 GACTCACTAT
Statistics
Matches: 62, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
25 9 0.15
26 14 0.23
27 10 0.16
28 10 0.16
29 19 0.31
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTTGATTTATA
Found at i:186918318 original size:38 final size:38
Alignment explanation
Indices: 186918216--186918320 Score: 110
Period size: 38 Copynumber: 2.8 Consensus size: 38
186918206 GTCGCTAGCG
*
186918216 CAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCCCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGCAA--CCCA
* *
186918256 CAAATG-CTTC-GGATCTTAG-TCGGATATAGTCAA-GCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAG-CAACCCA
*
186918292 CAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CAAATGCCTTCGGGACTTAGCCCGGATAT
186918321 CATTCGAATA
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
36 7 0.13
37 9 0.16
38 21 0.38
39 12 0.22
40 6 0.11
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (38 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGCAACCCA
Found at i:186922887 original size:40 final size:40
Alignment explanation
Indices: 186922828--186923035 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 40
186922818 CAATTGAATG
* * * *
186922828 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
186922868 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
186922908 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * *
186922948 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAG-ACGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTA-ATT
* * **
186922988 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
186923028 ATATCCGG
1 ATATCCGG
186923036 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:186922966 original size:80 final size:79
Alignment explanation
Indices: 186922830--186923035 Score: 243
Period size: 80 Copynumber: 2.6 Consensus size: 79
186922820 ATTGAATGAT
* * ** * * *
186922830 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
186922895 TGTGCTAGTGAC-TAC
66 TGTGC-A-AGACGTAC
* * * *
186922910 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
186922975 TGTGCAAGACGTTAT
66 TGTGCAAGACG-TAC
* *
186922990 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
186923036 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
78 3 0.03
79 1 0.01
80 104 0.96
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (79 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGACGTAC
Found at i:186930857 original size:40 final size:40
Alignment explanation
Indices: 186930798--186931005 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 40
186930788 CAATTGAATG
* * * *
186930798 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
186930838 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
186930878 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * *
186930918 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAG-ATGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTA-ATT
* * **
186930958 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
186930998 ATATCCGG
1 ATATCCGG
186931006 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:186930936 original size:80 final size:80
Alignment explanation
Indices: 186930800--186931005 Score: 252
Period size: 80 Copynumber: 2.6 Consensus size: 80
186930790 ATTGAATGAT
* * ** * * *
186930800 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
186930865 TGTGCTAG-TGACTAC
66 TGTGCAAGATG-CTAC
* * * *
186930880 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* *
186930945 TGTGCAAGATGTTAT
66 TGTGCAAGATGCTAC
* *
186930960 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
186931006 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 106 0.98
81 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGATGCTAC
Found at i:186934655 original size:43 final size:43
Alignment explanation
Indices: 186934603--186934746 Score: 150
Period size: 43 Copynumber: 3.4 Consensus size: 43
186934593 ATATTCCTTT
* *
186934603 GACATTGGCATTGTATTGTGATTACGTGTAAGACCATATCTCG
1 GACATTGGCATTGTATTGTGATTACATGTAAGACCATATCTGG
* * * *
186934646 GACATTGGCATTGTTAAT-CGATTTCATGTAAGACCCTATCTGG
1 GACATTGGCATTG-TATTGTGATTACATGTAAGACCATATCTGG
* * * *
186934689 GATAGTGGCATCG-ATATGTGATAACATGTAAGACCATATCTGG
1 GACATTGGCATTGTAT-TGTGATTACATGTAAGACCATATCTGG
*
186934732 GATA-TGGCATTGTAT
1 GACATTGGCATTGTAT
186934747 GAGCTATATG
Statistics
Matches: 82, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
41 1 0.01
42 8 0.10
43 70 0.85
44 3 0.04
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (43 bp):
GACATTGGCATTGTATTGTGATTACATGTAAGACCATATCTGG
Found at i:186935567 original size:21 final size:21
Alignment explanation
Indices: 186935536--186935595 Score: 113
Period size: 21 Copynumber: 2.9 Consensus size: 21
186935526 CCCTTGAAAC
186935536 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
186935556 AGGGCAACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
186935577 AGGGCAACACGCCCGTGTG
1 AGGGCAACACGCCCGTGTG
186935596 ATCATTAAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
20 5 0.13
21 34 0.87
ACGTcount: A:0.22, C:0.30, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:186936581 original size:42 final size:42
Alignment explanation
Indices: 186936530--186936613 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
186936520 ACTATCCAAT
*
186936530 ACAATTTACATAGTATTCATTGAGCTCATATCTCAAACATTC
1 ACAATTTACATAGTATTCATTGAGATCATATCTCAAACATTC
186936572 ACAATTTACATAGTATTCATTGAGATCATATCTCAAACATTC
1 ACAATTTACATAGTATTCATTGAGATCATATCTCAAACATTC
186936614 CAAATAGGTA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.37, C:0.20, G:0.07, T:0.36
Consensus pattern (42 bp):
ACAATTTACATAGTATTCATTGAGATCATATCTCAAACATTC
Found at i:186943004 original size:20 final size:21
Alignment explanation
Indices: 186942979--186943017 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
186942969 CCCTTGAAAC
*
186942979 AGGGC-ACATGCCGGTGTGGA
1 AGGGCAACATGCCCGTGTGGA
186942999 AGGGCAACATGCCCGTGTG
1 AGGGCAACATGCCCGTGTG
186943018 ATCACTAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.21, C:0.23, G:0.41, T:0.15
Consensus pattern (21 bp):
AGGGCAACATGCCCGTGTGGA
Found at i:186945146 original size:13 final size:13
Alignment explanation
Indices: 186945128--186945152 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
186945118 CCAAAAATAC
186945128 AAAAATCATCAAG
1 AAAAATCATCAAG
186945141 AAAAATCATCAA
1 AAAAATCATCAA
186945153 AATCAATTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:186950118 original size:49 final size:47
Alignment explanation
Indices: 186950001--186950317 Score: 433
Period size: 47 Copynumber: 6.7 Consensus size: 47
186949991 GATTTTACGC
* *
186950001 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
186950048 GATGAATGTGAAGGTGTATATATGTGATAAGG-CTGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCT-AATGGCCAATGT
*
186950095 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCTAATGGCCAATGT
*
186950144 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCTAATGGCCA-ATGT
*
186950193 GATGAATGTGAAGGTGTATATATGTGATAAGG-CTGAATAGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCT-AATGGCCAATGT
* * * * *
186950240 GATGAATGTGAAGGTGTATATATGTGACAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
* * *
186950287 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAGGTGTATATATGTGATAAG
186950318 TCCCGAAGGG
Statistics
Matches: 244, Mismatches: 18, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
46 4 0.02
47 143 0.59
48 10 0.04
49 85 0.35
50 2 0.01
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
Found at i:186950125 original size:96 final size:93
Alignment explanation
Indices: 186950001--186950317 Score: 424
Period size: 96 Copynumber: 3.3 Consensus size: 93
186949991 GATTTTACGC
186950001 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
186950066 TATATGTGATAAGGCTGAATGGCCAATGT
65 TATATGTGATAAGGCTGAATGGCCAATGT
186950095 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTG-AA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
*
186950160 TATATATATGTGATAAGGCCT-AATGG-CAGATGT
61 TGTATATATGTGATAAGG-CTGAATGGCCA-ATGT
* *
186950193 GATGAATGTGAAGGTGTATATATGTGATAAGG-CTGAATAGCCAATGTGATGAATGTGAAGGTGT
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAGGTGT
* * * * *
186950257 ATATATGTGACAGGGCCGAGTGGCCAACGT
64 ATATATGTGATAAGGCTGAATGGCCAATGT
* *
186950287 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTG-AAGTGTATATATGTGATAAG
186950318 TCCCGAAGGG
Statistics
Matches: 201, Mismatches: 12, Indels: 20
0.86 0.05 0.09
Matches are distributed among these distances:
93 1 0.00
94 59 0.29
95 11 0.05
96 84 0.42
97 7 0.03
98 37 0.18
99 2 0.01
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.29
Consensus pattern (93 bp):
GATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTAT
ATATGTGATAAGGCTGAATGGCCAATGT
Found at i:186952305 original size:42 final size:41
Alignment explanation
Indices: 186952241--186952452 Score: 214
Period size: 40 Copynumber: 5.2 Consensus size: 41
186952231 CTCGACGATG
* * *
186952241 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGCGATATAT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTG-TATAT
* * * * *
186952283 ATCCGGGTTAAGTCCCGTAGAGCATTCGTGCTGGTGT-TAC
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
*
186952323 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTG-ATAT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
* *
186952363 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTG-ATGT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
* * ** * * *
186952403 ATCCGGACCAGGTTCCGAAGAGCAGTCATGCTGGTGATATGT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTG-TATAT
*
186952445 ATTCGGGC
1 ATCCGGGC
186952453 CTTCGAGCCT
Statistics
Matches: 147, Mismatches: 20, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
40 103 0.70
41 1 0.01
42 43 0.29
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
Found at i:186952483 original size:43 final size:43
Alignment explanation
Indices: 186952435--186952655 Score: 388
Period size: 43 Copynumber: 5.1 Consensus size: 43
186952425 CAGTCATGCT
186952435 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
*
186952478 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
186952521 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
186952564 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
* * * **
186952607 GGTGATATGTATTCGGGTCTTCGTGCTTAGCAGGCTTAATGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
186952650 GGTGAT
1 GGTGAT
186952656 TCGAGCAAGG
Statistics
Matches: 171, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 171 1.00
ACGTcount: A:0.14, C:0.22, G:0.33, T:0.32
Consensus pattern (43 bp):
GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
Found at i:186956511 original size:49 final size:47
Alignment explanation
Indices: 186956394--186956708 Score: 440
Period size: 47 Copynumber: 6.7 Consensus size: 47
186956384 GATTTTACGC
* *
186956394 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
186956441 GATGAATGTGAAGGTGTATATATGTGATAAGG-CTGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCT-AATGGCCAATGT
*
186956488 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCTAATGGCCAATGT
*
186956537 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCTAATGGCCA-ATGT
*
186956586 GATGAATGTGAAGGTGTATATATGTGATAAGG-CTGAT-GCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
* * * *
186956631 GATGAATGTGAAGGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
* * *
186956678 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAGGTGTATATATGTGATAAG
186956709 TCCCGAAGGG
Statistics
Matches: 244, Mismatches: 16, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
45 36 0.15
46 10 0.04
47 104 0.43
48 7 0.03
49 85 0.35
50 2 0.01
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.30
Consensus pattern (47 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
Found at i:186956518 original size:96 final size:93
Alignment explanation
Indices: 186956394--186956708 Score: 431
Period size: 96 Copynumber: 3.3 Consensus size: 93
186956384 GATTTTACGC
186956394 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
186956459 TATATGTGATAAGGCTGAATGGCCAATGT
65 TATATGTGATAAGGCTGAATGGCCAATGT
186956488 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTG-AA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
*
186956553 TATATATATGTGATAAGGCCT-AATGG-CAGATGT
61 TGTATATATGTGATAAGG-CTGAATGGCCA-ATGT
* *
186956586 GATGAATGTGAAGGTGTATATATGTGATAAGG-CTGAT-GCCAATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
* * * *
186956649 TATATGTGATAGGGCCGAGTGGCCAACGT
65 TATATGTGATAAGGCTGAATGGCCAATGT
* *
186956678 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTG-AAGTGTATATATGTGATAAG
186956709 TCCCGAAGGG
Statistics
Matches: 201, Mismatches: 11, Indels: 20
0.87 0.05 0.09
Matches are distributed among these distances:
91 1 0.00
92 50 0.25
93 7 0.03
94 27 0.13
95 6 0.03
96 64 0.32
97 7 0.03
98 37 0.18
99 2 0.01
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.30
Consensus pattern (93 bp):
GATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTAT
ATATGTGATAAGGCTGAATGGCCAATGT
Found at i:186960279 original size:29 final size:27
Alignment explanation
Indices: 186960245--186960347 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
186960235 TACTCAATCA
*
186960245 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
186960274 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
186960303 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
186960332 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
186960348 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:186980367 original size:40 final size:40
Alignment explanation
Indices: 186980322--186980489 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
186980312 CGGAATATAA
186980322 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
186980362 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
186980402 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
186980442 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
186980482 CCGGATAT
1 CCGGATAT
186980490 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:186986880 original size:28 final size:28
Alignment explanation
Indices: 186986848--186986915 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
186986838 ATATGTGTGG
186986848 CACTTAGTGTGCGAAATATTGAGAATGGA
1 CACTTAGTGTGCGAAATATTGAGAAT-GA
* * *
186986877 -ACTTGGTGTGCGAGATATTGAGTATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
*
186986904 CACCTAGTGTGC
1 CACTTAGTGTGC
186986916 AAGACATTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
27 2 0.06
28 31 0.94
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.29
Consensus pattern (28 bp):
CACTTAGTGTGCGAAATATTGAGAATGA
Found at i:186996683 original size:39 final size:39
Alignment explanation
Indices: 186996590--186996738 Score: 149
Period size: 38 Copynumber: 3.8 Consensus size: 39
186996580 AAATTGAATG
* * * **
186996590 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGAT
* * * *
186996628 TTAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGAT
* *
186996667 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGAT
* *
186996707 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
186996739 AAATCGTGAT
Statistics
Matches: 91, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
38 30 0.33
39 29 0.32
40 30 0.33
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGAT
Found at i:186996753 original size:40 final size:38
Alignment explanation
Indices: 186996590--186996770 Score: 143
Period size: 40 Copynumber: 4.6 Consensus size: 38
186996580 AAATTGAATG
* * *
186996590 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAGTGT
* * * *
186996629 -TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG-T
* *
186996667 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TG-T
* *
186996707 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GT
* * *
186996746 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
186996771 CTTGGTGCGG
Statistics
Matches: 114, Mismatches: 21, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
35 2 0.02
36 4 0.04
37 2 0.02
38 20 0.18
39 31 0.27
40 55 0.48
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (38 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGT
Found at i:186996797 original size:80 final size:79
Alignment explanation
Indices: 186996629--186996815 Score: 189
Period size: 80 Copynumber: 2.4 Consensus size: 79
186996619 TGCTGAAATT
* * *
186996629 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGCTATATCCGGGCTAAGACCCGAAGGCATT
1 TAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATGCTATATCCGGGCTAAGACCCGAAGGCATT
***
186996694 CGTGCGAGTTGTTA
66 CGTGCGAGTTACCA
* * * *
186996708 -AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-CGTGATATCCGGGTTAAGTCCCGTAGGC
1 TAA-CCGGGCTAAGACCCGAAGGCAATTGTGCAAATGC-T-ATATCCGGGCTAAGACCCGAAGGC
* * *
186996771 CTTGGTGCGGGTTACCA
63 ATTCGTGCGAGTTACCA
* * *
186996788 TAACCGGGCTATGTCCCGAAGGCGATTG
1 TAACCGGGCTAAGACCCGAAGGCAATTG
186996816 AACGAGTACG
Statistics
Matches: 87, Mismatches: 17, Indels: 7
0.78 0.15 0.06
Matches are distributed among these distances:
78 3 0.03
79 29 0.33
80 53 0.61
81 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.24
Consensus pattern (79 bp):
TAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATGCTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCGAGTTACCA
Found at i:187004760 original size:40 final size:39
Alignment explanation
Indices: 187004592--187004762 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
187004582 AGAAATTGAA
* *
187004592 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
187004632 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
187004672 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
187004712 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
187004752 TGATATCCGGG
1 TGATATCCGGG
187004763 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:187007856 original size:27 final size:27
Alignment explanation
Indices: 187007808--187008074 Score: 284
Period size: 27 Copynumber: 9.9 Consensus size: 27
187007798 AATACTTTAG
* *** *
187007808 TTTACCAAATTACTGAAATACCGTCGA
1 TTTACAAAATTACTGTTTTACCCTCGA
* *
187007835 TTTATAAAATTACTGTTTTACCCTTGA
1 TTTACAAAATTACTGTTTTACCCTCGA
* *
187007862 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACTGTTTTACCCTCGA
187007889 TTTACAAAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACTGTTTTACCCTCGA
* *
187007916 TTTACAAAACTACCGTTTTACCCTC-A
1 TTTACAAAATTACTGTTTTACCCTCGA
* *
187007942 TTTGACAGAATTACTATTTTACCCTCGA
1 TTT-ACAAAATTACTGTTTTACCCTCGA
*
187007970 TTTATAAAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACTGTTTTACCCTCGA
* * * *
187007997 TTTAAAAAATTAATATTTTACCCTCAA
1 TTTACAAAATTACTGTTTTACCCTCGA
* * **
187008024 TTTACAGAATTACCGTTTTGACCCTTAA
1 TTTACAAAATTACTGTTTT-ACCCTCGA
* **
187008052 TTTATAAAATTACCATTTTACCC
1 TTTACAAAATTACTGTTTTACCC
187008075 CTAGGGTGTT
Statistics
Matches: 202, Mismatches: 35, Indels: 6
0.83 0.14 0.02
Matches are distributed among these distances:
26 4 0.02
27 171 0.85
28 27 0.13
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.40
Consensus pattern (27 bp):
TTTACAAAATTACTGTTTTACCCTCGA
Found at i:187007950 original size:81 final size:80
Alignment explanation
Indices: 187007808--187008074 Score: 318
Period size: 81 Copynumber: 3.3 Consensus size: 80
187007798 AATACTTTAG
* *** * * *
187007808 TTTACCAAATTACTGAAATACCGTCGATTTATAAAATTACTGTTTTACCCTTGATTTACAGAATT
1 TTTACAAAATTACTGTTTTACCCTCGATTTAAAAAATTACTGTTTTACCC-TCATTTACAGAATT
187007873 ACCGTTTTACCCTCGA
65 ACCGTTTTACCCTCGA
* * *
187007889 TTTACAAAATTACTGTTTTACCCTCGATTTACAAAACTACCGTTTTACCCTCATTTGACAGAATT
1 TTTACAAAATTACTGTTTTACCCTCGATTTAAAAAATTACTGTTTTACCCTCATTT-ACAGAATT
**
187007954 ACTATTTTACCCTCGA
65 ACCGTTTTACCCTCGA
* * *
187007970 TTTATAAAATTACTGTTTTACCCTCGATTTAAAAAATTAATATTTTACCCTCAATTTACAGAATT
1 TTTACAAAATTACTGTTTTACCCTCGATTTAAAAAATTACTGTTTTACCCTC-ATTTACAGAATT
**
187008035 ACCGTTTTGACCCTTAA
65 ACCGTTTT-ACCCTCGA
* **
187008052 TTTATAAAATTACCATTTTACCC
1 TTTACAAAATTACTGTTTTACCC
187008075 CTAGGGTGTT
Statistics
Matches: 160, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
80 5 0.03
81 124 0.77
82 31 0.19
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.40
Consensus pattern (80 bp):
TTTACAAAATTACTGTTTTACCCTCGATTTAAAAAATTACTGTTTTACCCTCATTTACAGAATTA
CCGTTTTACCCTCGA
Found at i:187008356 original size:27 final size:26
Alignment explanation
Indices: 187008312--187008363 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
187008302 CTTGCTGCAA
*
187008312 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
187008339 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
187008364 CCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:187013974 original size:40 final size:40
Alignment explanation
Indices: 187013930--187014058 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
187013920 TGCTGGAAAT
* * *
187013930 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
* *
187013970 TATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGAC
* * *
187014010 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGAC
187014050 TATATCCGG
1 TATATCCGG
187014059 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
39 4 0.05
40 71 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
Found at i:187017753 original size:28 final size:28
Alignment explanation
Indices: 187017707--187017774 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
187017697 CTATTTACGA
*
187017707 CACTTAGTGTGCAAGATATCGAGTGTGG
1 CACTTAGTGTGCAAGATATCGAGTATGG
** * *
187017735 CACTTAGTGTGTGATATATGGAGTATGG
1 CACTTAGTGTGCAAGATATCGAGTATGG
187017763 CACTTAGTGTGC
1 CACTTAGTGTGC
187017775 GAGGCATAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.24, C:0.13, G:0.31, T:0.32
Consensus pattern (28 bp):
CACTTAGTGTGCAAGATATCGAGTATGG
Found at i:187020764 original size:52 final size:52
Alignment explanation
Indices: 187020699--187020814 Score: 196
Period size: 52 Copynumber: 2.2 Consensus size: 52
187020689 GATATGACAT
* *
187020699 TGTGCTAACTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGACCACGGCATCTAAGTGAAATAAGTCCATGGCAA
* *
187020751 TGTGCTAAGTGAAATAAGTCCACGGCATCTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGACCACGGCATCTAAGTGAAATAAGTCCATGGCAA
187020803 TGTGCTAAGTGA
1 TGTGCTAAGTGA
187020815 GAAATTTCCT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 60 1.00
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.25
Consensus pattern (52 bp):
TGTGCTAAGTGAAATAAGACCACGGCATCTAAGTGAAATAAGTCCATGGCAA
Found at i:187020767 original size:28 final size:27
Alignment explanation
Indices: 187020699--187020814 Score: 145
Period size: 24 Copynumber: 4.4 Consensus size: 27
187020689 GATATGACAT
* *
187020699 TGTGCTAACTGAAATAAGACCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
187020726 --T-CTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGC-A
*
187020751 TGTGCTAAGTGAAATAAGTCCACGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
187020778 --T-CTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
187020802 TTGTGCTAAGTGA
1 -TGTGCTAAGTGA
187020815 GAAATTTCCT
Statistics
Matches: 77, Mismatches: 4, Indels: 15
0.80 0.04 0.16
Matches are distributed among these distances:
24 42 0.55
25 3 0.04
27 3 0.04
28 29 0.38
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.25
Consensus pattern (27 bp):
TGTGCTAAGTGAAATAAGTCCATGGCA
Found at i:187020907 original size:51 final size:51
Alignment explanation
Indices: 187020844--187021084 Score: 335
Period size: 51 Copynumber: 4.7 Consensus size: 51
187020834 TTAGGGATAA
* * *
187020844 AATAGCTTTGGACACAAGTTTGGTACTGTGTGAAGGCCACTTTCTGAATAT
1 AATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATAT
* * * *
187020895 AATAGGTTTGGACACAAGTGTGGTACTATGTAAAGGCCACTTTTTAAATAT
1 AATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATAT
*
187020946 AATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATAA
1 AATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATAT
* *
187020997 AATGGCTCTT-GATACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATGA-
1 AATAGCT-TTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAT-AT
*
187021048 AATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGC
1 AATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGC
187021085 AACCGTGTAT
Statistics
Matches: 170, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
50 2 0.01
51 165 0.97
52 3 0.02
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (51 bp):
AATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATAT
Found at i:187023888 original size:22 final size:21
Alignment explanation
Indices: 187023860--187023924 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
187023850 GCAAATACGT
187023860 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
*
187023882 TTGGCACAGAGCCATATAT-AGG
1 TTGGCACA-AACCATA-ATCAGG
*
187023904 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAA-CCATAATCAG
187023925 AATAATTGGC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 3 0.08
22 31 0.86
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:187024133 original size:41 final size:42
Alignment explanation
Indices: 187024064--187024184 Score: 174
Period size: 41 Copynumber: 2.9 Consensus size: 42
187024054 CTTAAAAGCC
* * *
187024064 ACCGGTGGATCCACAGTCATCAAGCAACCATGCAATCCTT-A
1 ACCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTCA
* * *
187024105 ATCGGTGGACCCACGGTCGTCAAACAACCATGCGAT-CTTCA
1 ACCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTCA
187024146 ACCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCT
1 ACCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCT
187024185 CACTTTCTTC
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
40 3 0.04
41 64 0.93
42 2 0.03
ACGTcount: A:0.27, C:0.32, G:0.21, T:0.19
Consensus pattern (42 bp):
ACCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTCA
Found at i:187026524 original size:40 final size:40
Alignment explanation
Indices: 187026475--187026647 Score: 188
Period size: 40 Copynumber: 4.3 Consensus size: 40
187026465 TCTTCGGAAT
* *
187026475 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
187026514 TTAACCCGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * * *
187026554 TTAGCCCGGATATGACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
187026594 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
187026634 TTAGCCCGGATATA
1 TTAGCCCGGATATA
187026648 TTCAAATGCT
Statistics
Matches: 109, Mismatches: 22, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 5 0.05
40 102 0.94
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:187034918 original size:40 final size:40
Alignment explanation
Indices: 187034873--187035040 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
187034863 TCGGATATAA
187034873 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
187034913 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
187034953 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
187034993 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
187035033 CCGGATAT
1 CCGGATAT
187035041 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:187040856 original size:13 final size:13
Alignment explanation
Indices: 187040838--187040866 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
187040828 GGTTGTTTAT
187040838 TAAACTAATTAAC
1 TAAACTAATTAAC
187040851 TAAACTAATTAAC
1 TAAACTAATTAAC
187040864 TAA
1 TAA
187040867 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:187043822 original size:6 final size:6
Alignment explanation
Indices: 187043796--187043834 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
187043786 AATAAAATTG
* *
187043796 AAATGA AAATAA AAATAA AAAGAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
187043835 GATAAGAGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.13
Consensus pattern (6 bp):
AAATAA
Found at i:187043822 original size:18 final size:18
Alignment explanation
Indices: 187043801--187043836 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
187043791 AATTGAAATG
187043801 AAAATAAAAATAAAAAGA
1 AAAATAAAAATAAAAAGA
187043819 AAAATAAAAATAAAAAGA
1 AAAATAAAAATAAAAAGA
187043837 TAAGAGGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.11
Consensus pattern (18 bp):
AAAATAAAAATAAAAAGA
Found at i:187058094 original size:35 final size:35
Alignment explanation
Indices: 187058052--187058121 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
187058042 ACTAAGATAG
187058052 GATAAACCAATATTTAGTCCTAAATGAAATAATTT
1 GATAAACCAATATTTAGTCCTAAATGAAATAATTT
187058087 GATAAACCAATATTTAGTCCTAAATGAAATAATTT
1 GATAAACCAATATTTAGTCCTAAATGAAATAATTT
187058122 TTTTCATCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.34
Consensus pattern (35 bp):
GATAAACCAATATTTAGTCCTAAATGAAATAATTT
Found at i:187063940 original size:44 final size:44
Alignment explanation
Indices: 187063880--187064688 Score: 401
Period size: 44 Copynumber: 18.7 Consensus size: 44
187063870 CACCATCCTA
* * * *
187063880 TCTCTCTAAACAGTAGTGGAGTAGGTTGAAGATTGTAGATCTTG
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATCTTG
* * **
187063924 TCTCCCTAAGCAGTAGTGGAGCAGATCGAA-AATGGCGAATCTTG
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAG-ATCTTG
* * ** * ***
187063968 TCTTCCTAAGCAGTAGTGGAGCAGATTTAAG---CCACCATCCCA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTA-GATCTTG
* * **
187064010 TCTCCCTAAACAGTAGTGGAGTAGGCTGAAGATTGTAGATCTTG
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATCTTG
* * * * * * * *
187064054 TCTCCCTAAGTAGTACTAGAGCAGATCGAAAATGGAAAATCTTG
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATCTTG
* * ** * * *
187064098 TCTCCCTAAGCAGTAATGGAGCAGATTTAAG---CCACCATCATA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTA-GATCTTG
* * * ** *
187064140 TCTCCCTGAGTAGTAGTGGAGTAGGCTGAAGATTGTAGATCTTC
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATCTTG
* * * * *
187064184 TCTCCCTAAGTATTAGTGGAGCAGATCGAAAATGGT-GAATCTTG
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAG-ATCTTG
* * * ** * *
187064228 TCTCCCTAAGCAGTAGTAGAGGAGATTTAAG---CCACCATC-TA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTA-GATCTTG
* ** **
187064269 TCTTCCTAAGCAGTAGTGGAATAGGCTGAAGATTGTAGATCTTG
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATCTTG
* * * *
187064313 TCTCCTTAAGTAGTAGTGGAGCAGATCGAA-AATGTAGAATCTTG
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAG-ATCTTG
* * ** * * *
187064357 TCT-CCTAAGCAGTAGTGGAGTAGATTTAAG---CCACCATCCTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTA-GATCTTG
* * ** ** *
187064398 CCTCCTTAAGCAGTAGTGGAGTGGGCTGAAGATTGTAGTTCTTG
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATCTTG
* * * **
187064442 TCTCCCTAAGCAGTAGTGCAGCAGATCGAA-AATGGCGAATCTTG
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAG-ATCTTG
* * ** * *
187064486 TCTCCCTAAGAAGTAGTGGAGCTA-ATT-TA-A-TCCACCATCTTA
1 TCTCCCTAAGCAGTAGTGGAGC-AGATTGAAGATTGTA-GATCTTG
* **
187064528 TCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGTAGATCTTG
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATCTTG
** * * *
187064572 TCTCCCTAAGCAGTAGTGGAGCAGATTTG-AG---CCACCATCCTA
1 TCTCCCTAAGCAGTAGTGGAGCAGA-TTGAAGATTGTA-GATCTTG
** * ** *
187064614 TCTCCCTAAATAGTAGTGGAGTAGGCTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATCTTG
* *
187064658 TCTCTCTAAGTAGTAGTGGAGCAGATTGAAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAG
187064689 CCATCAGCCT
Statistics
Matches: 549, Mismatches: 179, Indels: 74
0.68 0.22 0.09
Matches are distributed among these distances:
41 37 0.07
42 135 0.25
43 42 0.08
44 326 0.59
45 9 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (44 bp):
TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATCTTG
Found at i:187063969 original size:130 final size:130
Alignment explanation
Indices: 187063763--187064597 Score: 1181
Period size: 130 Copynumber: 6.4 Consensus size: 130
187063753 CTTGAGTAGC
* * * * * * *
187063763 AGTGGAGCAGGCTGAACATTGTAGATCTTATCTCCATAAGGTAGCAATGGAGCAGATCGAAGATG
1 AGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTAA-GTAGTAGTGGAGCAGATCGAAAATG
* * * * ** * *
187063828 GGGAATCTTGTCTCCTTAAACAGTTGTAAAGTAGATTTAAGCCACCATCCTATCTCTCTAAACAG
65 GAGAATCTTGTCTCCCTAAGCAGTAGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGCAG
187063893 T
130 T
* *
187063894 AGTGGAGTAGGTTGAAGATTGTAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGG
1 AGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTAAGTAGTAGTGGAGCAGATCGAAAATGG
* * * * *
187063959 CGAATCTTGTCTTCCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATCCCATCTCCCTAAACAGT
66 AGAATCTTGTCTCCCTAAGCAGTAGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGCAGT
* *
187064024 AGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTAAGTAGTACTAGAGCAGATCGAAAATGG
1 AGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTAAGTAGTAGTGGAGCAGATCGAAAATGG
* * * * * *
187064089 AAAATCTTGTCTCCCTAAGCAGTAATGGAGCAGATTTAAGCCACCATCATATCTCCCTGAGTAGT
66 AGAATCTTGTCTCCCTAAGCAGTAGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGCAGT
* *
187064154 AGTGGAGTAGGCTGAAGATTGTAGATCTTCTCTCCCTAAGTATTAGTGGAGCAGATCGAAAATGG
1 AGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTAAGTAGTAGTGGAGCAGATCGAAAATGG
* * * *
187064219 TGAATCTTGTCTCCCTAAGCAGTAGTAGAGGAGATTTAAGCCACCAT-CTATCTTCCTAAGCAGT
66 AGAATCTTGTCTCCCTAAGCAGTAGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGCAGT
* * *
187064283 AGTGGAATAGGCTGAAGATTGTAGATCTTGTCTCCTTAAGTAGTAGTGGAGCAGATCGAAAATGT
1 AGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTAAGTAGTAGTGGAGCAGATCGAAAATGG
* *
187064348 AGAATCTTGTCT-CCTAAGCAGTAGTGGAGTAGATTTAAGCCACCATCCTACCTCCTTAAGCAGT
66 AGAATCTTGTCTCCCTAAGCAGTAGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGCAGT
* * * *
187064412 AGTGGAGTGGGCTGAAGATTGTAGTTCTTGTCTCCCTAAGCAGTAGTGCAGCAGATCGAAAATGG
1 AGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTAAGTAGTAGTGGAGCAGATCGAAAATGG
* * * *
187064477 CGAATCTTGTCTCCCTAAGAAGTAGTGGAGCTA-ATTTAATCCACCATCTTATCTCCCTAAGCAG
66 AGAATCTTGTCTCCCTAAGCAGTAGTGGAG-TAGATTTAAGCCACCATCCTATCTCCCTAAGCAG
187064541 T
130 T
*
187064542 AGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGAT
1 AGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTAAGTAGTAGTGGAGCAGAT
187064598 TTGAGCCACC
Statistics
Matches: 629, Mismatches: 72, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
128 32 0.05
129 167 0.27
130 394 0.63
131 36 0.06
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (130 bp):
AGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTAAGTAGTAGTGGAGCAGATCGAAAATGG
AGAATCTTGTCTCCCTAAGCAGTAGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGCAGT
Found at i:187064474 original size:388 final size:390
Alignment explanation
Indices: 187063723--187064597 Score: 1265
Period size: 388 Copynumber: 2.2 Consensus size: 390
187063713 AGGTAGCAAG
* * * * * * *
187063723 GGAGCAGATTTAAGCCACTAGCCTTGTCTCCTTGAGTAGCAGTGGAGCAGGCTGAACATTGTAGA
1 GGAGCAGATTTAAGCCACCA-TCTTATCTCCCTGAGTAGTAGTGGAGTAGGCTGAAGATTGTAGA
* * * * * *
187063788 TCTTATCTCCATAAGGTAGCAATGGAGCAGATCGAAGATGGGGAATCTTGTCTCCTTAAACAGTT
65 TCTTATCTCCCTAA-GTAGTAGTGGAGCAGATCGAAAATGGGGAATCTTGTCTCCCTAAACAGTA
* * *
187063853 GTAAAGTAGATTTAAGCCACCATCCTATCTCTCTAAACAGTAGTGGAGTAGGTTGAAGATTGTAG
129 GTAAAGGAGATTTAAGCCACCATCCTATCTCTCTAAACAGTAGTGGAATAGGCTGAAGATTGTAG
*
187063918 ATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCGAATCTTGTCTTCCTAAGCAGTA
194 ATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGAGAATCTTGTCTTCCTAAGCAGTA
*
187063983 GTGGAGCAGATTTAAGCCACCATCCCATCTCCCTAAACAGTAGTGGAGTAGGCTGAAGATTGTAG
259 GTGGAGCAGATTTAAGCCACCATCCCACCTCCCTAAACAGTAGTGGAGTAGGCTGAAGATTGTAG
* *
187064048 ATCTTGTCTCCCTAAGTAGTACTAGAGCAGATCGAAAATGGAAAATCTTGTCTCCCTAAGCAGTA
324 ATCTTGTCTCCCTAAGCAGTACTAGAGCAGATCGAAAATGGAAAATCTTGTCTCCCTAAGAAGTA
187064113 AT
389 AT
*
187064115 GGAGCAGATTTAAGCCACCATCATATCTCCCTGAGTAGTAGTGGAGTAGGCTGAAGATTGTAGAT
1 GGAGCAGATTTAAGCCACCATCTTATCTCCCTGAGTAGTAGTGGAGTAGGCTGAAGATTGTAGAT
* * * *
187064180 CTTCTCTCCCTAAGTATTAGTGGAGCAGATCGAAAATGGTGAATCTTGTCTCCCTAAGCAGTAGT
66 CTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAAATGGGGAATCTTGTCTCCCTAAACAGTAGT
* *
187064245 AGAGGAGATTTAAGCCACCAT-CTATCT-TCCTAAGCAGTAGTGGAATAGGCTGAAGATTGTAGA
131 AAAGGAGATTTAAGCCACCATCCTATCTCT-CTAAACAGTAGTGGAATAGGCTGAAGATTGTAGA
* * *
187064308 TCTTGTCTCCTTAAGTAGTAGTGGAGCAGATCGAAAATGTAGAATCTTGTC-TCCTAAGCAGTAG
195 TCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGAGAATCTTGTCTTCCTAAGCAGTAG
* * * * * *
187064372 TGGAGTAGATTTAAGCCACCATCCTACCTCCTTAAGCAGTAGTGGAGTGGGCTGAAGATTGTAGT
260 TGGAGCAGATTTAAGCCACCATCCCACCTCCCTAAACAGTAGTGGAGTAGGCTGAAGATTGTAGA
* **
187064437 TCTTGTCTCCCTAAGCAGTAGT-GCAGCAGATCGAAAATGGCGAATCTTGTCTCCCTAAGAAGTA
325 TCTTGTCTCCCTAAGCAGTACTAG-AGCAGATCGAAAATGGAAAATCTTGTCTCCCTAAGAAGTA
*
187064501 GT
389 AT
* * *
187064503 GGAGCTA-ATTTAATCCACCATCTTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGTAGA
1 GGAGC-AGATTTAAGCCACCATCTTATCTCCCTGAGTAGTAGTGGAGTAGGCTGAAGATTGTAGA
* *
187064567 TCTTGTCTCCCTAAGCAGTAGTGGAGCAGAT
65 TCTTATCTCCCTAAGTAGTAGTGGAGCAGAT
187064598 TTGAGCCACC
Statistics
Matches: 433, Mismatches: 47, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
387 1 0.00
388 216 0.50
389 85 0.20
390 63 0.15
391 49 0.11
392 19 0.04
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (390 bp):
GGAGCAGATTTAAGCCACCATCTTATCTCCCTGAGTAGTAGTGGAGTAGGCTGAAGATTGTAGAT
CTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAAATGGGGAATCTTGTCTCCCTAAACAGTAGT
AAAGGAGATTTAAGCCACCATCCTATCTCTCTAAACAGTAGTGGAATAGGCTGAAGATTGTAGAT
CTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGAGAATCTTGTCTTCCTAAGCAGTAGT
GGAGCAGATTTAAGCCACCATCCCACCTCCCTAAACAGTAGTGGAGTAGGCTGAAGATTGTAGAT
CTTGTCTCCCTAAGCAGTACTAGAGCAGATCGAAAATGGAAAATCTTGTCTCCCTAAGAAGTAAT
Found at i:187064532 original size:86 final size:86
Alignment explanation
Indices: 187064437--187064707 Score: 269
Period size: 86 Copynumber: 3.1 Consensus size: 86
187064427 AGATTGTAGT
* *
187064437 TCTTGTCTCCCTAAGCAGTAGTGCAGCA-GATCGAAAATGGCGA-ATCTTGTCTCCCTAAGAAGT
1 TCTTATCTCCCTAAGCAGTAGTGCAGCAGGCT-GAAAATGG-GAGATCTTGTCTCCCTAAGAAGT
*
187064500 AGTGGAGCTA-ATTTAATCCACCA
64 AGTGGAGC-AGATTTAAGCCACCA
* * * * * *
187064523 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCCCTAAGCAGTAG
1 TCTTATCTCCCTAAGCAGTAGTGCAGCAGGCTGAAAATGGGAGATCTTGTCTCCCTAAGAAGTAG
*
187064588 TGGAGCAGATTTGAGCCACCA
66 TGGAGCAGATTTAAGCCACCA
* ** * * * * * * * *
187064609 TCCTATCTCCCTAAATAGTAGTGGAGTAGGCTGAAGATTGTAGATCTTATCTCTCTAAGTAGTAG
1 TCTTATCTCCCTAAGCAGTAGTGCAGCAGGCTGAAAATGGGAGATCTTGTCTCCCTAAGAAGTAG
* *
187064674 TGGAGCAGATTGAAGCCATCA
66 TGGAGCAGATTTAAGCCACCA
*
187064695 GCCTTATCTCCCT
1 -TCTTATCTCCCT
187064708 GAAGTTCCAG
Statistics
Matches: 160, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
85 2 0.01
86 146 0.91
87 12 0.08
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (86 bp):
TCTTATCTCCCTAAGCAGTAGTGCAGCAGGCTGAAAATGGGAGATCTTGTCTCCCTAAGAAGTAG
TGGAGCAGATTTAAGCCACCA
Found at i:187064757 original size:45 final size:43
Alignment explanation
Indices: 187064694--187064816 Score: 140
Period size: 45 Copynumber: 2.8 Consensus size: 43
187064684 TGAAGCCATC
*
187064694 AGCCTTATCTCCCTGAAGTTCCAGTGGAGCAGACTAAAGATAGCA
1 AGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATA--A
* * * ** * *
187064739 AGCTTTATCTTCCC-GAAGTAGTAGTGGAGCAGGTTGAAGTTAA
1 AGCCTTATC-TCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAA
187064782 AGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT
1 AGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT
187064817 GAAGCTACAA
Statistics
Matches: 63, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
42 4 0.06
43 26 0.41
45 29 0.46
46 4 0.06
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (43 bp):
AGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAA
Found at i:187067684 original size:39 final size:40
Alignment explanation
Indices: 187067602--187067753 Score: 143
Period size: 39 Copynumber: 3.9 Consensus size: 40
187067592 AAATTGAATG
* * * **
187067602 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA--ATTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC--AAGTAGCT
* *
187067642 ATATCCGGGTTAAGACCCGAA-GCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGCT
* *
187067681 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAGCT
* *
187067721 AAATCC-GGCTAAGACCCGAAGGCATTTGTGCAA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAA
187067754 ATCGTGATAT
Statistics
Matches: 94, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
37 1 0.01
39 56 0.60
40 37 0.39
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGCT
Found at i:187069864 original size:28 final size:28
Alignment explanation
Indices: 187069832--187069930 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
187069822 GCCATAAGCC
*
187069832 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
187069860 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
187069888 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
187069917 CGCACACTTAGTGC
1 CGCACACTTAGTGC
187069931 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:187077528 original size:28 final size:28
Alignment explanation
Indices: 187077496--187077594 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
187077486 GCCATAAGCC
*
187077496 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
187077524 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
187077552 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
187077581 CGCACACTTAGTGC
1 CGCACACTTAGTGC
187077595 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:187079844 original size:55 final size:56
Alignment explanation
Indices: 187079779--187079893 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
187079769 AGCATGGCTG
* * *
187079779 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCA-AAACAGATAATTTGTGGCA-TAGCCA
* * * *
187079835 CCAGA-ACAGATATATGTGGCAGGGCCACCAAAATAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAAAACAGATAATTTGTGGCATAGCCA
187079890 CCAG
1 CCAG
187079894 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAAAACAGATAATTTGTGGCATAGCCA
Found at i:187079856 original size:27 final size:27
Alignment explanation
Indices: 187079804--187079893 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 27
187079794 GTGACAGAGT
187079804 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
187079833 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
* *
187079860 CACCAAAATAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
187079888 CACCAG
1 CACCAG
187079894 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 22 0.42
28 23 0.44
29 7 0.13
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:187079889 original size:28 final size:27
Alignment explanation
Indices: 187079812--187079892 Score: 83
Period size: 27 Copynumber: 2.9 Consensus size: 27
187079802 GTCACCAGAT
* *
187079812 ACAGATATTTTGTGGCAGTGCCACCAGA
1 ACAGATAATTTGTGGCA-TGCCACCAAA
* *
187079840 ACAGAT-ATATGTGGCAGGGCCACCAAA
1 ACAGATAATTTGTGGCA-TGCCACCAAA
*
187079867 ATAGATAATTTGTGGCATAGCCACCA
1 ACAGATAATTTGTGGCAT-GCCACCA
187079893 GGACGCTTCC
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
27 22 0.50
28 22 0.50
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.22
Consensus pattern (27 bp):
ACAGATAATTTGTGGCATGCCACCAAA
Found at i:187082916 original size:47 final size:47
Alignment explanation
Indices: 187082845--187083240 Score: 217
Period size: 46 Copynumber: 8.5 Consensus size: 47
187082835 GACTAGTTCT
* *
187082845 AGACATGGTCTTACACTGGTTCATATCCCAAGCCGATGCCATGTCCT
1 AGACATGGTCTTACACTGGCTCATATCCCAAGCCGATGCCATGTCCC
* * *
187082892 AGACATGGTCTTACAATGGCTCATATCCTAAGTCGATGCCATGTCCCCC
1 AGACATGGTCTTACACTGGCTCATATCCCAAGCCGATGCCATGT--CCC
* **
187082941 AGACATGGTCTTACACTGACT-ATCATCTCGTAGCCGATG-CATGTCCC
1 AGACATGGTCTTACACTGGCTCAT-ATC-CCAAGCCGATGCCATGTCCC
* * ** * * *
187082988 AAACAT-GTCTTACACTGGCTTACGTCTCGAGGTCGATG-CATGTCCC
1 AGACATGGTCTTACACTGGCTCATATC-CCAAGCCGATGCCATGTCCC
* * * * * * * *
187083034 AAACAT-TTCTTACACTAGAACTCGTCT-CGATGTCGATGCCATGT-CC
1 AGACATGGTCTTACACT-G-GCTCATATCCCAAGCCGATGCCATGTCCC
* **
187083080 AGACATGGTCTTACACTGACT-ATCATCTCGTAGCCGATG-CATGTCCC
1 AGACATGGTCTTACACTGGCTCAT-ATC-CCAAGCCGATGCCATGTCCC
* * ** * * *
187083127 AAACAT-GTCTTACACTGGCTTACGTCTCGAGGTCGATG-CATGTCCC
1 AGACATGGTCTTACACTGGCTCATATC-CCAAGCCGATGCCATGTCCC
* * * * * * * *
187083173 AAACAT-TTCTTACACTAGAACTCGTCT-CGATGTCGATGCCATGT-CC
1 AGACATGGTCTTACACT-G-GCTCATATCCCAAGCCGATGCCATGTCCC
187083219 AGACATGGTCTTACACTGGCTC
1 AGACATGGTCTTACACTGGCTC
187083241 TCATAATATG
Statistics
Matches: 283, Mismatches: 48, Indels: 38
0.77 0.13 0.10
Matches are distributed among these distances:
44 1 0.00
45 7 0.02
46 135 0.48
47 95 0.34
48 8 0.03
49 29 0.10
50 8 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
AGACATGGTCTTACACTGGCTCATATCCCAAGCCGATGCCATGTCCC
Found at i:187083004 original size:46 final size:46
Alignment explanation
Indices: 187082923--187083280 Score: 301
Period size: 46 Copynumber: 7.7 Consensus size: 46
187082913 CATATCCTAA
* *
187082923 GTCGATGCCATGTCCCCCAGACATGGTCTTACACTGACTATCATCTCGTA-
1 GTCGATG-CATGT--CCCAAACAT-GTCTTACACTGACTATCGTCTCG-AG
* *
187082973 GCCGATGCATGTCCCAAACATGTCTTACACTGGCT-TACGTCTCGAG
1 GTCGATGCATGTCCCAAACATGTCTTACACTGACTAT-CGTCTCGAG
* *
187083019 GTCGATGCATGTCCCAAACATTTCTTACACTAGA--ACTCGTCTCGAT
1 GTCGATGCATGTCCCAAACATGTCTTACACT-GACTA-TCGTCTCGAG
* *
187083065 GTCGATGCCATGT-CCAGACATGGTCTTACACTGACTATCATCTCGTA-
1 GTCGATG-CATGTCCCAAACAT-GTCTTACACTGACTATCGTCTCG-AG
* *
187083112 GCCGATGCATGTCCCAAACATGTCTTACACTGGCT-TACGTCTCGAG
1 GTCGATGCATGTCCCAAACATGTCTTACACTGACTAT-CGTCTCGAG
* *
187083158 GTCGATGCATGTCCCAAACATTTCTTACACTAGA--ACTCGTCTCGAT
1 GTCGATGCATGTCCCAAACATGTCTTACACT-GACTA-TCGTCTCGAG
* * * * *
187083204 GTCGATGCCATGT-CCAGACATGGTCTTACACTGGCTCTCATAAT--ATG
1 GTCGATG-CATGTCCCAAACAT-GTCTTACACTGACTATCGT-CTCGA-G
*
187083251 GCCGATG-ATGTCCCAAACATGTCTTACACT
1 GTCGATGCATGTCCCAAACATGTCTTACACT
187083281 AGCTCACGTT
Statistics
Matches: 257, Mismatches: 28, Indels: 51
0.76 0.08 0.15
Matches are distributed among these distances:
45 18 0.07
46 156 0.61
47 69 0.27
48 3 0.01
49 5 0.02
50 6 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
GTCGATGCATGTCCCAAACATGTCTTACACTGACTATCGTCTCGAG
Found at i:187083111 original size:139 final size:139
Alignment explanation
Indices: 187082923--187083289 Score: 621
Period size: 139 Copynumber: 2.6 Consensus size: 139
187082913 CATATCCTAA
187082923 GTCGATGCCATGTCCCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCC
1 GTCGATGCCATGT---CCAGACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCC
187082988 AAACATGTCTTACACTGGCTTACGTCTCGAGGTCGATGCATGTCCCAAACATTTCTTACACTAGA
63 AAACATGTCTTACACTGGCTTACGTCTCGAGGTCGATGCATGTCCCAAACATTTCTTACACTAGA
187083053 ACTCGTCTCGAT
128 ACTCGTCTCGAT
187083065 GTCGATGCCATGTCCAGACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAAA
1 GTCGATGCCATGTCCAGACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAAA
187083130 CATGTCTTACACTGGCTTACGTCTCGAGGTCGATGCATGTCCCAAACATTTCTTACACTAGAACT
66 CATGTCTTACACTGGCTTACGTCTCGAGGTCGATGCATGTCCCAAACATTTCTTACACTAGAACT
187083195 CGTCTCGAT
131 CGTCTCGAT
* * * * *
187083204 GTCGATGCCATGTCCAGACATGGTCTTACACTGGCTCTCATAAT-ATGGCCGATG-ATGTCCCAA
1 GTCGATGCCATGTCCAGACATGGTCTTACACTGACTATCAT-CTCGTAGCCGATGCATGTCCCAA
* *
187083267 ACATGTCTTACACTAGCTCACGT
65 ACATGTCTTACACTGGCTTACGT
187083290 TAACCCATAT
Statistics
Matches: 217, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
138 30 0.14
139 173 0.80
140 1 0.00
142 13 0.06
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (139 bp):
GTCGATGCCATGTCCAGACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAAA
CATGTCTTACACTGGCTTACGTCTCGAGGTCGATGCATGTCCCAAACATTTCTTACACTAGAACT
CGTCTCGAT
Found at i:187083239 original size:93 final size:89
Alignment explanation
Indices: 187082923--187083236 Score: 305
Period size: 93 Copynumber: 3.4 Consensus size: 89
187082913 CATATCCTAA
* * *
187082923 GTCGATGCCATGTCCCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCC
1 GTCGATG-CATGT--CCCAAACAT-GTCTTACACTGACTA-CGTCTCG-AGTCGATGCATGTCCC
* *
187082988 AAACATGTCTTACACTGGCTTACGTCTCGAG
60 AAACATGTCTTACACTGACTT-CGTCTCGAT
* *
187083019 GTCGATGCATGTCCCAAACATTTCTTACACTAGAACT-CGTCTCGATGTCGATGCCATGT-CCAG
1 GTCGATGCATGTCCCAAACATGTCTTACACT-G-ACTACGTCTCGA-GTCGATG-CATGTCCCAA
*
187083082 ACATGGTCTTACACTGACTATCATCTCG-T
62 ACAT-GTCTTACACTGACT-TCGTCTCGAT
* *
187083111 AGCCGATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAGGTCGATGCATGTCCCAAA
1 -GTCGATGCATGTCCCAAACATGTCTTACACTGAC-TACGTCTCGA-GTCGATGCATGTCCCAAA
*
187083176 CATTTCTTACACTAGAAC-TCGTCTCGAT
63 CATGTCTTACACT-G-ACTTCGTCTCGAT
*
187083204 GTCGATGCCATGT-CCAGACATGGTCTTACACTG
1 GTCGATG-CATGTCCCAAACAT-GTCTTACACTG
187083237 GCTCTCATAA
Statistics
Matches: 186, Mismatches: 17, Indels: 33
0.79 0.07 0.14
Matches are distributed among these distances:
91 2 0.01
92 64 0.34
93 102 0.55
94 6 0.03
95 5 0.03
96 7 0.04
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (89 bp):
GTCGATGCATGTCCCAAACATGTCTTACACTGACTACGTCTCGAGTCGATGCATGTCCCAAACAT
GTCTTACACTGACTTCGTCTCGAT
Found at i:187090587 original size:40 final size:40
Alignment explanation
Indices: 187090529--187090638 Score: 175
Period size: 40 Copynumber: 2.8 Consensus size: 40
187090519 TATCTCATAT
* * *
187090529 ACTAAGTGTCGTACATAGCCGAAGCTATCTCAAATCGCAC
1 ACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCGCAC
187090569 ACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCGCAC
1 ACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCGCAC
* *
187090609 ACTAAGTGCCATATATAGTCGAACCTATCT
1 ACTAAGTGCCATATATAGCCGAAGCTATCT
187090639 TGATCTCGCA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (40 bp):
ACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCGCAC
Found at i:187107579 original size:40 final size:40
Alignment explanation
Indices: 187107434--187107680 Score: 358
Period size: 40 Copynumber: 6.2 Consensus size: 40
187107424 CGGGATTTAA
* * * * *
187107434 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
187107474 CCGGATTTGGT-GACTTGCACAAAGGCCTTC-GGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
187107513 CCGGATATATC-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
187107552 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
187107592 CCGGATATATCAACTCGCACGAATGCCTT-GGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
187107631 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
187107671 CCGGATATAT
1 CCGGATATAT
187107681 TTCCAATGTT
Statistics
Matches: 188, Mismatches: 14, Indels: 10
0.89 0.07 0.05
Matches are distributed among these distances:
38 16 0.09
39 73 0.39
40 99 0.53
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:187107625 original size:79 final size:79
Alignment explanation
Indices: 187107434--187107680 Score: 356
Period size: 79 Copynumber: 3.1 Consensus size: 79
187107424 CGGGATTTAA
* * * * * * * * * *
187107434 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAACCCGGATTTGGT-GACTTGCACAAAG
1 CCGGATATATC-ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATAT-ATCAACTCGCACGAAT
187107498 GCCTTC-GGTCTTAGC
64 GCCTTCGGGTCTTAGC
187107513 CCGGATATATCACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGC
1 CCGGATATATCACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGC
187107578 CTTCGGGTCTTAGC
66 CTTCGGGTCTTAGC
187107592 CCGGATATATCAACTCGCACGAATGCCTT-GGGTCTTAGCCCGGATATATCAACTCGCACGAATG
1 CCGGATATATC-ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATG
187107656 CCTTCGGGTCTTAGC
65 CCTTCGGGTCTTAGC
187107671 CCGGATATAT
1 CCGGATATAT
187107681 TTCCAATGTT
Statistics
Matches: 155, Mismatches: 10, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
77 1 0.01
78 47 0.30
79 90 0.58
80 17 0.11
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.26
Consensus pattern (79 bp):
CCGGATATATCACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGC
CTTCGGGTCTTAGC
Found at i:187119336 original size:40 final size:40
Alignment explanation
Indices: 187119284--187119380 Score: 119
Period size: 40 Copynumber: 2.4 Consensus size: 40
187119274 CTATCTCGGT
187119284 ATCGCACACTTAGTGCCTTA-TATAGCCGAAGATA-TTCCA
1 ATCGCACACTTAGTG-CTTACTATAGCCGAAGATATTTCCA
* **
187119323 ATTCGCACACTTAGTG-TTATCTATAGCCGAAGCTATTTTTA
1 A-TCGCACACTTAGTGCTTA-CTATAGCCGAAGATATTTCCA
187119364 ATCGCACACTTAGTGCT
1 ATCGCACACTTAGTGCT
187119381 GAACAAAGCC
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
38 3 0.06
39 1 0.02
40 41 0.82
41 5 0.10
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (40 bp):
ATCGCACACTTAGTGCTTACTATAGCCGAAGATATTTCCA
Found at i:187120943 original size:27 final size:27
Alignment explanation
Indices: 187120898--187121053 Score: 152
Period size: 27 Copynumber: 5.8 Consensus size: 27
187120888 ATTACCAAAG
*
187120898 TACCCTC-ATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * * *
187120924 TACCCTCAATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
187120951 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* * ** *
187120978 TACCCTCGATTTATAGAATTATTATAT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
187121005 TACCATTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
*
187121032 TACGCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
187121054 TAAAATACCC
Statistics
Matches: 109, Mismatches: 20, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
26 7 0.06
27 102 0.94
ACGTcount: A:0.33, C:0.20, G:0.06, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:187121071 original size:27 final size:27
Alignment explanation
Indices: 187120978--187121336 Score: 208
Period size: 27 Copynumber: 13.3 Consensus size: 27
187120968 ATTACCGTTT
* * * * *
187120978 TACCCTCGATTTATAGAATTATTATAT
1 TACCCTTGATTTATAAAATTACTAAAA
* * ***
187121005 TACCATTGATTTACAAAATTACTATTT
1 TACCCTTGATTTATAAAATTACTAAAA
* * *
187121032 TACGCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* *
187121059 TACCCTTGGTTTATAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* *
187121086 TACCCTCGA-TTAGTAAAATTGCTAAAA
1 TACCCTTGATTTA-TAAAATTACTAAAA
* * **
187121113 TACCC-TGGTTTGTAAAATTACCGAAA
1 TACCCTTGATTTATAAAATTACTAAAA
** *
187121139 TACCCTCAATTTGTAAAATTACTAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* * * * *
187121166 TACCCCTAATTTGTAAAATTACCAATA
1 TACCCTTGATTTATAAAATTACTAAAA
* * * **
187121193 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGATTTATAAAATTACTAAAA
** * *
187121220 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
**
187121247 TACCC-TGATTTATAAAGCTAC-AGAAA
1 TACCCTTGATTTATAAAATTACTA-AAA
* *
187121273 TACCCTTGACTTTCTAAAAATTA-TGGAAA
1 TACCCTTGA-TTTAT-AAAATTACT-AAAA
* * * *
187121302 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTATAAAATTACTAAAA
187121329 TACCCTTG
1 TACCCTTG
187121337 GTTTGTAGAT
Statistics
Matches: 260, Mismatches: 60, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
25 1 0.00
26 40 0.15
27 195 0.75
28 9 0.03
29 15 0.06
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTTGATTTATAAAATTACTAAAA
Found at i:187121077 original size:54 final size:54
Alignment explanation
Indices: 187120885--187121189 Score: 217
Period size: 54 Copynumber: 5.7 Consensus size: 54
187120875 CTCAAATTGT
* * * *
187120885 AAAATTACCAAAGTACCC-TCATTTATAAAATTACCATTTTACCCTCAATTTAC
1 AAAATTACTAAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGATTTAC
* ** * * * *
187120938 AGAATTATCGT--TTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTAT
1 AAAATTA-C-TAAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGATTTAC
* * * * * * * *
187120992 AGAATTATTATATTACCATTGATTTACAAAATTACTATTTTACGCTCGATTTAC
1 AAAATTACTAAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGATTTAC
* *** *
187121046 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGA-TTAGT
1 AAAATTACTAAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGATTTA-C
* * * ** * **
187121100 AAAATTGCTAAAATACCC-TGGTTTGTAAAATTACCGA-AATACCCTCAATTTGT
1 AAAATTACTAAAATACCCTTGATTTATAAAATTACC-ATTTTACCCTCGATTTAC
* * *
187121153 AAAATTACTAAAATACCCCTAATTTGTAAAATTACCA
1 AAAATTACTAAAATACCCTTGATTTATAAAATTACCA
187121190 ATATACCACT
Statistics
Matches: 203, Mismatches: 40, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
52 1 0.00
53 59 0.29
54 143 0.70
ACGTcount: A:0.38, C:0.19, G:0.07, T:0.36
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGATTTAC
Found at i:187121206 original size:54 final size:53
Alignment explanation
Indices: 187121036--187121262 Score: 251
Period size: 54 Copynumber: 4.2 Consensus size: 53
187121026 CTATTTTACG
** ** *
187121036 CTCGATTTACAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACC
1 CTCGATTTGTAAAATTACTAAAATACCC-TAATTTGTAAAATTACCAAAATACC
* * ** *
187121090 CTCGATTAGTAAAATTGCTAAAATACCCTGGTTTGTAAAATTACCGAAATACC
1 CTCGATTTGTAAAATTACTAAAATACCCTAATTTGTAAAATTACCAAAATACC
* *
187121143 CTCAATTTGTAAAATTACTAAAATACCCCTAATTTGTAAAATTACCAATATACC
1 CTCGATTTGTAAAATTACTAAAATA-CCCTAATTTGTAAAATTACCAAAATACC
* * **
187121197 ACT-GGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACC
1 -CTCGATTTGTAAAATTACTAAAATACCCT-AATTTGTAAAATTACCAAAATACC
*
187121251 CT-GATTTATAAA
1 CTCGATTTGTAAA
187121263 GCTACAGAAA
Statistics
Matches: 148, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
53 58 0.39
54 88 0.59
55 2 0.01
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (53 bp):
CTCGATTTGTAAAATTACTAAAATACCCTAATTTGTAAAATTACCAAAATACC
Found at i:187121229 original size:81 final size:81
Alignment explanation
Indices: 187121072--187121251 Score: 274
Period size: 81 Copynumber: 2.2 Consensus size: 81
187121062 CCTTGGTTTA
* * *
187121072 TAAAATTACCAAAATA-CCCTCGATTAGTAAAATTGCTAAAATACCCTGGTTTGTAAAATTACCG
1 TAAAATTACCAAAATACCCCTCAATTAGTAAAATTACCAAAATACCCTGGTTTGTAAAATTACCG
187121136 AAATACCCTCAATTTG
66 AAATACCCTCAATTTG
* * * *
187121152 TAAAATTACTAAAATACCCCT-AATTTGTAAAATTACCAATATACCACTGGTTTGTGAAATTACC
1 TAAAATTACCAAAATACCCCTCAATTAGTAAAATTACCAAAATACC-CTGGTTTGTAAAATTACC
187121216 GAAATACCCTCAATTTG
65 GAAATACCCTCAATTTG
187121233 TAAAATTACCAAAATACCC
1 TAAAATTACCAAAATACCC
187121252 TGATTTATAA
Statistics
Matches: 90, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
80 34 0.38
81 56 0.62
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (81 bp):
TAAAATTACCAAAATACCCCTCAATTAGTAAAATTACCAAAATACCCTGGTTTGTAAAATTACCG
AAATACCCTCAATTTG
Found at i:187121291 original size:54 final size:54
Alignment explanation
Indices: 187121036--187121334 Score: 243
Period size: 54 Copynumber: 5.5 Consensus size: 54
187121026 CTATTTTACG
* * *
187121036 CTCGATTTACAAAATTACTAAAATACCCTTG-GTTTATAAAATTACCAAAATACC
1 CTCGATTTATAAAATTACTAAAATACCC-TGAATTTGTAAAATTACCAAAATACC
* * *
187121090 CTCGA-TTAGTAAAATTGCTAAAATACCCTG-GTTTGTAAAATTACCGAAATACC
1 CTCGATTTA-TAAAATTACTAAAATACCCTGAATTTGTAAAATTACCAAAATACC
* * *
187121143 CTCAATTTGTAAAATTACTAAAATACCCCT-AATTTGTAAAATTACCAATATACC
1 CTCGATTTATAAAATTACTAAAATA-CCCTGAATTTGTAAAATTACCAAAATACC
* * * ** *
187121197 ACT-GGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACC
1 -CTCGATTTATAAAATTACTAAAATACCCTGAATTTGTAAAATTACCAAAATACC
** * * ***
187121251 CT-GATTTATAAAGCTAC-AGAAATACCCTTGACTTTCTAAAAATTATGGAAATACC
1 CTCGATTTATAAAATTACTA-AAATACCC-TGAATTTGT-AAAATTACCAAAATACC
* * * * *
187121306 ATTGGTTTACAAAATTACTGAAATACCCT
1 CTCGATTTATAAAATTACTAAAATACCCT
187121335 TGGTTTGTAG
Statistics
Matches: 200, Mismatches: 34, Indels: 21
0.78 0.13 0.08
Matches are distributed among these distances:
53 69 0.34
54 94 0.47
55 18 0.09
56 19 0.09
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31
Consensus pattern (54 bp):
CTCGATTTATAAAATTACTAAAATACCCTGAATTTGTAAAATTACCAAAATACC
Found at i:187121485 original size:27 final size:27
Alignment explanation
Indices: 187121394--187121485 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
187121384 TCCCCTATTA
*
187121394 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
*
187121421 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
187121448 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
187121475 GGTAAAATGAC
1 GGTAAAATGAC
187121486 GAATATGCCC
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
27 59 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:187122338 original size:52 final size:51
Alignment explanation
Indices: 187122281--187122415 Score: 213
Period size: 51 Copynumber: 2.7 Consensus size: 51
187122271 GAGGAAGTGC
* *
187122281 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGTTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAA-GGCTTATGCCCCAGTTTACCG
187122333 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGCTTATGCCCCAGTTTACCG
187122384 AAAAGGGCTT-TGCCCCAG-TTATT-AAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAA-AGGCT
187122416 AGGCCTCCAG
Statistics
Matches: 80, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
48 3 0.04
49 10 0.12
50 8 0.10
51 30 0.38
52 29 0.36
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGCTTATGCCCCAGTTTACCG
Found at i:187122372 original size:25 final size:26
Alignment explanation
Indices: 187122281--187122403 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
187122271 GAGGAAGTGC
*
187122281 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
187122307 AAAAGGGTTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
187122333 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
187122359 AAAA-GGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
187122384 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
187122404 ATTAAAGAGG
Statistics
Matches: 87, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
25 33 0.38
26 54 0.62
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:187122606 original size:41 final size:41
Alignment explanation
Indices: 187122548--187122636 Score: 124
Period size: 41 Copynumber: 2.1 Consensus size: 41
187122538 TAGTCTCCCC
* ** * *
187122548 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATGTTG
1 AAAT-GGCTTGCATACATCCATTGACATTACATGTGATATTG
187122590 AAATGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGCTTGCATACATCCATTGACATTACATGTGATATTG
187122631 AAATGG
1 AAATGG
187122637 GCCTAAGGGC
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
41 38 0.90
42 4 0.10
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.36
Consensus pattern (41 bp):
AAATGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:187124991 original size:27 final size:27
Alignment explanation
Indices: 187124961--187125020 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
187124951 AAAATTGTAA
187124961 AATTACCAAAGTACCCTTGATTTACAG
1 AATTACCAAAGTACCCTTGATTTACAG
* **** *
187124988 AATTATCGTTTTACCCTTGATTTATAG
1 AATTACCAAAGTACCCTTGATTTACAG
187125015 AATTAC
1 AATTAC
187125021 TGTTTTACCC
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.38
Consensus pattern (27 bp):
AATTACCAAAGTACCCTTGATTTACAG
Found at i:187125020 original size:54 final size:54
Alignment explanation
Indices: 187124960--187125144 Score: 140
Period size: 54 Copynumber: 3.4 Consensus size: 54
187124950 TAAAATTGTA
* *
187124960 AAATTACCAAAGTACCCTTGATTTACAGAATTATCGTTTTACCCTTGATTTAT-
1 AAATTACCAAAGTACCCTCGATTTACAGAATTATCATTTTACCCTTGATTTATG
***** * *
187125013 AGAATTACTGTTTTACCCTCGATTTATAGAATTATTATTTTACCCTTGATTTATG
1 A-AATTACCAAAGTACCCTCGATTTACAGAATTATCATTTTACCCTTGATTTATG
***** * *** * **
187125068 AAATTACTGTTTTACCCTCGATTTACAAAATTA-CTAAAATACCCTTGGTTTACA
1 AAATTACCAAAGTACCCTCGATTTACAGAATTATC-ATTTTACCCTTGATTTATG
*
187125122 AAATTACCAAAATACCCTCGATT
1 AAATTACCAAAGTACCCTCGATT
187125145 AGTAAAATTA
Statistics
Matches: 106, Mismatches: 23, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
53 1 0.01
54 104 0.98
55 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (54 bp):
AAATTACCAAAGTACCCTCGATTTACAGAATTATCATTTTACCCTTGATTTATG
Found at i:187125025 original size:27 final size:27
Alignment explanation
Indices: 187124972--187125102 Score: 167
Period size: 27 Copynumber: 4.9 Consensus size: 27
187124962 ATTACCAAAG
*
187124972 TACCCTTGATTTACAGAATTA-TCGTTT
1 TACCCTTGATTTATAGAATTACT-GTTT
187124999 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTTGATTTATAGAATTACTGTTT
* * *
187125026 TACCCTCGATTTATAGAATTATTATTT
1 TACCCTTGATTTATAGAATTACTGTTT
187125053 TACCCTTGATTTAT-GAAATTACTGTTT
1 TACCCTTGATTTATAG-AATTACTGTTT
* * *
187125080 TACCCTCGATTTACAAAATTACT
1 TACCCTTGATTTATAGAATTACT
187125103 AAAATACCCT
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
26 1 0.01
27 89 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.09, T:0.45
Consensus pattern (27 bp):
TACCCTTGATTTATAGAATTACTGTTT
Found at i:187125110 original size:27 final size:27
Alignment explanation
Indices: 187125080--187125323 Score: 161
Period size: 27 Copynumber: 9.2 Consensus size: 27
187125070 ATTACTGTTT
*
187125080 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
187125107 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
187125134 TACCCTCGA-TTAGTAAAATTACTAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAA
* ** *
187125161 TACCC-CTGGTTTGTAAAATTACCGAAA
1 TACCCTC-GATTTACAAAATTACCAAAA
* *
187125188 TACCCTC-AATT-CGTAAATTACCAAAA
1 TACCCTCGATTTAC-AAAATTACCAAAA
187125214 TACCCT-G-TTGT--AAAATTACCAAAA
1 TACCCTCGATT-TACAAAATTACCAAAA
* *** *
187125238 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTACAAAATTACCAAAA
* **
187125265 TA-CCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
*
187125291 TACCC-CTGATTTACAAAGTTA-CAGAAA
1 TACCCTC-GATTTACAAAATTACCA-AAA
187125318 TACCCT
1 TACCCT
187125324 TGACTTTCTA
Statistics
Matches: 173, Mismatches: 28, Indels: 31
0.75 0.12 0.13
Matches are distributed among these distances:
24 16 0.09
25 7 0.04
26 48 0.28
27 99 0.57
28 3 0.02
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:187125127 original size:81 final size:81
Alignment explanation
Indices: 187124972--187125127 Score: 172
Period size: 81 Copynumber: 1.9 Consensus size: 81
187124962 ATTACCAAAG
* * * ****
187124972 TACCCTTGATTTACAGAATTATCGTTTTACCCTTGATTTATAGAATTACTGTTTTACCCTCGATT
1 TACCCTTGATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTCGATT
* *
187125037 TATAGAATTATTATTT
66 TACAAAATTATTATTT
* * *
187125053 TACCCTTGATTTA-TGAAATTA-CTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGG
1 TACCCTTGATTTACAG-AATTATC-GTTTTACCCTCGATTTACAAAATTACTAAAATACCCTCGA
187125116 TTTACAAAATTA
64 TTTACAAAATTA
187125128 CCAAAATACC
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
80 2 0.03
81 59 0.97
ACGTcount: A:0.31, C:0.17, G:0.09, T:0.43
Consensus pattern (81 bp):
TACCCTTGATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTCGATT
TACAAAATTATTATTT
Found at i:187125205 original size:26 final size:27
Alignment explanation
Indices: 187125080--187125295 Score: 212
Period size: 27 Copynumber: 8.2 Consensus size: 27
187125070 ATTACTGTTT
** *
187125080 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * **
187125107 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* *
187125134 TACCCTCGATTAGTAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* *
187125161 TACCC-CTGGTTTGTAAAATTACCGAAA
1 TACCCTC-GATTTGTAAAATTACCAAAA
* *
187125188 TACCCTCAATTCGT-AAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
187125214 TACCCT-G--TTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * *
187125238 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTGTAAAATTACCAAAA
*
187125265 TA-CCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
187125291 TACCC
1 TACCC
187125296 CTGATTTACA
Statistics
Matches: 156, Mismatches: 25, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
23 3 0.02
24 16 0.10
25 5 0.03
26 37 0.24
27 94 0.60
28 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:187125247 original size:77 final size:80
Alignment explanation
Indices: 187125121--187125295 Score: 277
Period size: 77 Copynumber: 2.2 Consensus size: 80
187125111 CTTGGTTTAC
* *
187125121 AAAATTACCAAAATACCCTCGATTAGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCGA
1 AAAATTACCAAAATACCCTCGATTAGTAAAATTACCAAAATACCACTGGTTTGTAAAATTACCGA
187125186 AATACCCTCAATTCGT
66 AATA-CCTCAATTCGT
*
187125202 -AAATTACCAAAATACCCT-G-TT-GTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGA
1 AAAATTACCAAAATACCCTCGATTAGTAAAATTACCAAAATACCACTGGTTTGTAAAATTACCGA
*
187125263 AATACCTCAATTTGT
66 AATACCTCAATTCGT
187125278 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
187125296 CTGATTTACA
Statistics
Matches: 89, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
76 10 0.11
77 58 0.65
78 2 0.02
79 1 0.01
80 18 0.20
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.28
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTCGATTAGTAAAATTACCAAAATACCACTGGTTTGTAAAATTACCGA
AATACCTCAATTCGT
Found at i:187125318 original size:53 final size:53
Alignment explanation
Indices: 187125121--187125321 Score: 143
Period size: 53 Copynumber: 3.8 Consensus size: 53
187125111 CTTGGTTTAC
* * **
187125121 AAAATTACCAAAATACC-CTCGATTAGTA-AAATTACTA-AAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCACT-GATTTG-ACAAATTAC-AGAAATACCTC-AATTTGT
* * * *
187125175 AAAATTACCGAAATACC-CTCAATTCG-TAAATTACCA-AAATACC-C--TGTTGT
1 AAAATTACCAAAATACCACT-GATTTGACAAATTA-CAGAAATACCTCAAT-TTGT
* ** *
187125225 AAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCTCAATTTGT
1 AAAATTACCAAAATACCACTGATTTGACAAATTACAGAAATACCTCAATTTGT
*
187125278 AAAATTACCAAAATACCCCTGATTT-ACAAAGTTACAGAAATACC
1 AAAATTACCAAAATACCACTGATTTGACAAA-TTACAGAAATACC
187125322 CTTGACTTTC
Statistics
Matches: 123, Mismatches: 14, Indels: 21
0.78 0.09 0.13
Matches are distributed among these distances:
49 1 0.01
50 24 0.20
51 15 0.12
52 5 0.04
53 53 0.43
54 25 0.20
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACCAAAATACCACTGATTTGACAAATTACAGAAATACCTCAATTTGT
Found at i:187125385 original size:27 final size:27
Alignment explanation
Indices: 187125080--187125385 Score: 148
Period size: 27 Copynumber: 11.4 Consensus size: 27
187125070 ATTACTGTTT
* * *
187125080 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
187125107 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * * *
187125134 TACCC-TCGATTAGTAAAATTACTAAAA
1 TACCCTTGGTTTA-CAAAATTACCAAAA
* ** *
187125161 TACCCCTGGTTTGTAAAATTACCGAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
*** *
187125188 TACCC-TCAATT-CGTAAATTACCAAAA
1 TACCCTTGGTTTAC-AAAATTACCAAAA
187125214 TACCC-T-GTTGT--AAAATTACCAAAA
1 TACCCTTGGTT-TACAAAATTACCAAAA
*** *
187125238 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGGTTTACAAAATTACCAAAA
*** **
187125265 TA-CCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * *
187125291 TACCCCTGATTTACAAAGTTA-CAGAAA
1 TACCCTTGGTTTACAAAATTACCA-AAA
* ***
187125318 TACCCTTGACTTT-CTAAAAATTATTGAAA
1 TACCCTTG-GTTTAC--AAAATTACCAAAA
* * **
187125347 TACCATTCGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
187125374 TACCCTTGGTTT
1 TACCCTTGGTTT
187125386 GTAGATTTAC
Statistics
Matches: 218, Mismatches: 45, Indels: 32
0.74 0.15 0.11
Matches are distributed among these distances:
24 16 0.07
25 5 0.02
26 50 0.23
27 121 0.56
28 10 0.05
29 16 0.07
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACCAAAA
Found at i:187125470 original size:27 final size:27
Alignment explanation
Indices: 187125439--187125530 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
187125429 TCCTCTATTA
*
187125439 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
187125466 GGTAAAGTGACCATAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
187125493 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
187125520 GGTAAAATGAC
1 GGTAAAATGAC
187125531 GAATATGCCC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 57 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:187126361 original size:26 final size:26
Alignment explanation
Indices: 187126332--187126506 Score: 237
Period size: 26 Copynumber: 6.8 Consensus size: 26
187126322 GAGGAAGTGC
* *
187126332 AAAAGGGCTTATGCCTCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
* * *
187126358 AAAAGGGCTTATACCCCATTTTACTA
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
187126384 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
* *
187126410 AAAAAGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
* *
187126436 AAAAGGGCTTATGCCCCAGGTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
187126462 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
187126487 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
187126507 ATTAAAGAGG
Statistics
Matches: 130, Mismatches: 19, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
25 32 0.25
26 98 0.75
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACTG
Found at i:187126394 original size:52 final size:52
Alignment explanation
Indices: 187126332--187126506 Score: 273
Period size: 52 Copynumber: 3.4 Consensus size: 52
187126322 GAGGAAGTGC
* * * **
187126332 AAAAGGGCTTATGCCTCAGTTTATTGAAAAGGGCTTATACCCCATTTTACTA
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
187126384 AAAAGGGCTTATGCCCCAGTTTATTGAAAAAGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
187126436 AAAAGGGCTTATGCCCCAGGTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
187126487 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
187126507 ATTAAAGAGG
Statistics
Matches: 114, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
50 9 0.08
51 25 0.22
52 80 0.70
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:187126698 original size:42 final size:42
Alignment explanation
Indices: 187126651--187126742 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
187126641 TAGTCTCCCC
* ** *
187126651 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
187126693 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
187126735 AAATGGGC
1 AAATGGGC
187126743 CTAGGGCCAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:187129667 original size:29 final size:28
Alignment explanation
Indices: 187129612--187129705 Score: 125
Period size: 28 Copynumber: 3.3 Consensus size: 28
187129602 ATTGCATGAC
* *
187129612 TATGAATGTGATTGGGCCCAATAGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
187129640 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGA-TTGGGCCTAATGGGCCA
* * *
187129669 TATGAAAGAGATTGGGCCTAGTGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
*
187129697 TATGCATGT
1 TATGAATGT
187129706 ATGTAGACTT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 33 0.58
29 24 0.42
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTAATGGGCCA
Found at i:187135748 original size:27 final size:27
Alignment explanation
Indices: 187135714--187135774 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
187135704 GGGCAAAATG
187135714 GTAA-TTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
187135740 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
187135767 GTAATTTT
1 GTAATTTT
187135775 TCAAACATGG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
26 4 0.13
27 27 0.87
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.39
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:187135824 original size:25 final size:26
Alignment explanation
Indices: 187135730--187135830 Score: 107
Period size: 26 Copynumber: 3.9 Consensus size: 26
187135720 TACCCCACAA
** ** *
187135730 GGGTATTTCAGTAATTTTACCCTACAG
1 GGGTATTTTGGTAATTTTA-CAAACAT
* *
187135757 GGGTATTTTAGTAATTTTTCAAACAT
1 GGGTATTTTGGTAATTTTACAAACAT
187135783 GGGTATTTTGGTAATTTTACAAAC-T
1 GGGTATTTTGGTAATTTTACAAACAT
187135808 AGGGTATTTTGGT-ATTTTACAAA
1 -GGGTATTTTGGTAATTTTACAAA
187135831 ATTGGGGGTA
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
25 11 0.17
26 38 0.58
27 17 0.26
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.43
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACAT
Found at i:187135876 original size:27 final size:27
Alignment explanation
Indices: 187135846--187136164 Score: 348
Period size: 27 Copynumber: 11.8 Consensus size: 27
187135836 GGGTATTTCT
* *
187135846 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * *
187135873 GTAATTCTGT-AATCAAGAG-AAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
187135898 GTAATTCTATAAATCG-GCGGTAAAA-A
1 GTAATTCTGTAAATCGAG-GGTAAAACA
*
187135924 CGATAATTTTGTAAATCGAGGGTAAAACA
1 -G-TAATTCTGTAAATCGAGGGTAAAACA
*
187135953 GTAATTCTGTAAATC-ATGGGTAAAAACG
1 GTAATTCTGTAAATCGA-GGGT-AAAACA
* *
187135981 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
187136008 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
187136035 GTATTATT-TATAAATCGAGGGTAAAACA
1 GTA--ATTCTGTAAATCGAGGGTAAAACA
*
187136063 GTAATTCTGT-AATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
187136089 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
187136116 GTAATTATGTAAATCGGGGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
187136142 GATAATTCTGTAAATCGGGGGTA
1 G-TAATTCTGTAAATCGAGGGTA
187136165 CTTTGGTAAT
Statistics
Matches: 253, Mismatches: 24, Indels: 30
0.82 0.08 0.10
Matches are distributed among these distances:
25 16 0.06
26 42 0.17
27 125 0.49
28 64 0.25
29 6 0.02
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACA
Found at i:187135966 original size:55 final size:54
Alignment explanation
Indices: 187135846--187136164 Score: 396
Period size: 55 Copynumber: 5.9 Consensus size: 54
187135836 GGGTATTTCT
* ** * * * *
187135846 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGT-AATCAAGAG-AAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* *
187135898 GTAATTCTATAAATCG-GCGGTAAAAACGATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAG-GGT-AAAACGGTAATTTTGTAAATCGAGGGTAAAACA
*
187135953 GTAATTCTGTAAATC-ATGGGTAAAAACGGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGA-GGGT-AAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* *
187136008 GTAATTCTGTAAATCGAGGGTAAAACGGTATTATTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAAT-TTTGTAAATCGAGGGTAAAACA
*
187136063 GTAATTCTGT-AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * * * *
187136116 GTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
187136165 CTTTGGTAAT
Statistics
Matches: 237, Mismatches: 21, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
51 1 0.00
52 17 0.07
53 41 0.17
54 71 0.30
55 105 0.44
56 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.29
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
Found at i:187136129 original size:108 final size:107
Alignment explanation
Indices: 187135846--187136164 Score: 394
Period size: 108 Copynumber: 3.0 Consensus size: 107
187135836 GGGTATTTCT
* ** * * * * *
187135846 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGT-AATCAAGAG-AAAATAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
*
187135909 AATCGGCGGTAAAAACGATAATTTTGTAAATCGAGGGTAAAACA
66 AATCGG-GGT-AAAACGATAATTTTATAAATCGAGGGTAAAACA
*
187135953 GTAATTCTGTAAATC-ATGGGTAAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTG
1 GTAATTCTGTAAATCGA-GGGT-AAAACGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTG
* *
187136017 TAAATCGAGGGTAAAACGGTATTATTTATAAATCGAGGGTAAAACA
64 TAAATCG-GGGTAAAACGATAAT-TTTATAAATCGAGGGTAAAACA
* *
187136063 GTAATTCTGT-AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
* * *
187136127 AATCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
66 AATC-GGGGTAAAACGATAATTTTATAAATCGAGGGTA
187136165 CTTTGGTAAT
Statistics
Matches: 184, Mismatches: 20, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
106 1 0.01
107 32 0.17
108 70 0.38
109 25 0.14
110 55 0.30
111 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.29
Consensus pattern (107 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
AATCGGGGTAAAACGATAATTTTATAAATCGAGGGTAAAACA
Found at i:187136155 original size:135 final size:137
Alignment explanation
Indices: 187135846--187136164 Score: 406
Period size: 135 Copynumber: 2.4 Consensus size: 137
187135836 GGGTATTTCT
* * * *
187135846 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGT-AATCAAGAG-AAAATAGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
*
187135909 AATCGGCGGTAAAAACGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCATGGGT
66 AATCGGCGGTAAAAACGATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCATGGGT
187135974 AAAAACG
131 AAAAACG
* *
187135981 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTATTATT-TA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTA--ATTCTA
* *
187136045 TAAATCGAG-GGT-AAAAC-AGTAATTCTGT-AATCGAGGGTAAAACGGTAATTTTGTAAATCGA
64 TAAATCG-GCGGTAAAAACGA-TAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATC-A
187136106 -GGGT-AAAACG
126 TGGGTAAAAACG
* * *
187136116 GTAATTATGTAAATCGGGGGTAAAAC-GATAATTCTGTAAATCGGGGGTA
1 GTAATTTTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTA
187136165 CTTTGGTAAT
Statistics
Matches: 163, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
134 1 0.01
135 84 0.52
136 41 0.25
137 21 0.13
138 12 0.07
139 4 0.02
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.29
Consensus pattern (137 bp):
GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
AATCGGCGGTAAAAACGATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCATGGGT
AAAAACG
Found at i:187136191 original size:27 final size:27
Alignment explanation
Indices: 187136170--187136258 Score: 117
Period size: 27 Copynumber: 3.3 Consensus size: 27
187136160 GGGTACTTTG
*
187136170 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
187136197 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
187136224 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
187136251 GTAATTTT
1 GTAATTTT
187136259 TAGTAAACTA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 52 0.96
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:187136211 original size:54 final size:54
Alignment explanation
Indices: 187136153--187136258 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 54
187136143 ATAATTCTGT
* * *
187136153 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
187136207 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTT
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTT
187136259 TAGTAAACTA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
53 6 0.14
54 38 0.86
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:187136269 original size:29 final size:27
Alignment explanation
Indices: 187136188--187136269 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
187136178 ACAAGTCGAA
* *
187136188 GGTATTTCAGTAATTTTACAAA-TCGAG
1 GGTATTTCAGTATTTTTACAAACT-AAG
187136215 GGTATTTCAGTATTTTTACAAACTAAG
1 GGTATTTCAGTATTTTTACAAACTAAG
* *
187136242 GGTATTTCGGTAATTTTTAGTAAACTAA
1 GGTATTTCAGT-ATTTTTA-CAAACTAA
187136270 AGTATTCTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
27 33 0.69
28 8 0.17
29 7 0.15
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (27 bp):
GGTATTTCAGTATTTTTACAAACTAAG
Found at i:187136449 original size:17 final size:18
Alignment explanation
Indices: 187136429--187136474 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
187136419 AACTTATCCA
187136429 ATTGGGCCCATA-GGCCC
1 ATTGGGCCCATATGGCCC
*
187136446 ATTGGGCCCACATGGCCC
1 ATTGGGCCCATATGGCCC
* *
187136464 TTTCGGCCCAT
1 ATTGGGCCCAT
187136475 CGCAGCCCCG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.15, C:0.37, G:0.26, T:0.22
Consensus pattern (18 bp):
ATTGGGCCCATATGGCCC
Found at i:187138412 original size:40 final size:40
Alignment explanation
Indices: 187138367--187138533 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
187138357 CGGAATATAA
187138367 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
187138407 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
187138447 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
187138487 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
187138526 CCGGATAT
1 CCGGATAT
187138534 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:187144558 original size:29 final size:29
Alignment explanation
Indices: 187144468--187144627 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
187144458 ACTCGATTTC
* * **
187144468 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
187144497 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
187144525 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
187144555 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
187144584 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
187144613 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
187144628 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:187152642 original size:29 final size:29
Alignment explanation
Indices: 187152552--187152711 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
187152542 ACTCGATTTC
* * **
187152552 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
187152581 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
187152609 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
187152639 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
187152668 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
187152697 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
187152712 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:187160236 original size:30 final size:30
Alignment explanation
Indices: 187160182--187160244 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
187160172 TATGATATGG
* * *
187160182 TATCTTGGATTTCTGTACCTTGGATATCTT
1 TATCTTGGATTCCTCTACCATGGATATCTT
* *
187160212 TATCTTGGATTCCTCTATCATGGATTTCTT
1 TATCTTGGATTCCTCTACCATGGATATCTT
187160242 TAT
1 TAT
187160245 TCTGGTTTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.51
Consensus pattern (30 bp):
TATCTTGGATTCCTCTACCATGGATATCTT
Found at i:187166461 original size:30 final size:30
Alignment explanation
Indices: 187166407--187166469 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
187166397 TATGATATGG
* * *
187166407 TATCTTGGATTTCTGTACCTTGGATATCTT
1 TATCTTGGATTCCTCTACCATGGATATCTT
* *
187166437 TATCTTGGATTCCTCTATCATGGATTTCTT
1 TATCTTGGATTCCTCTACCATGGATATCTT
187166467 TAT
1 TAT
187166470 TCTGGTTTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.51
Consensus pattern (30 bp):
TATCTTGGATTCCTCTACCATGGATATCTT
Found at i:187172911 original size:29 final size:29
Alignment explanation
Indices: 187172878--187172951 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
187172868 GTGACGAGAT
187172878 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
187172907 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
187172936 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
187172952 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:187172967 original size:29 final size:30
Alignment explanation
Indices: 187172935--187173010 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 30
187172925 CTGGAAATAT
* *
187172935 ATGGCACTAAGTGTGCGA-GCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGGCTCAAAGCGC
** * *
187172964 ATGGCACTGTGTGTGC-AGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGGCTCAAAGCGC
187172993 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
187173011 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
28 1 0.03
29 35 0.95
30 1 0.03
ACGTcount: A:0.24, C:0.20, G:0.34, T:0.22
Consensus pattern (30 bp):
ATGGCACTAAGTGTGCGAGGCTCAAAGCGC
Found at i:187172968 original size:58 final size:58
Alignment explanation
Indices: 187172878--187173010 Score: 142
Period size: 58 Copynumber: 2.3 Consensus size: 58
187172868 GTGACGAGAT
* * * * * *
187172878 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * *
187172936 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCAGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
187172994 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
187173011 AATCGAGTAT
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
57 4 0.06
58 58 0.94
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:187183734 original size:39 final size:39
Alignment explanation
Indices: 187183690--187183854 Score: 172
Period size: 39 Copynumber: 4.2 Consensus size: 39
187183680 CGGAATATAA
187183690 CCGGATATAACACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
187183729 CCGGATAGAATACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
187183768 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
187183808 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGC
187183847 CCGGATAT
1 CCGGATAT
187183855 CATTCAATTT
Statistics
Matches: 106, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 55 0.52
40 50 0.47
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:187188089 original size:40 final size:39
Alignment explanation
Indices: 187188044--187188173 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
187188034 CGGAATACAA
187188044 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
187188084 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
187188124 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
187188164 CCGGATATAA
1 CCGGATATAA
187188174 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Done.