Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 599 of 770
Found at i:187485314 original size:40 final size:39
Alignment explanation
Indices: 187485148--187485328 Score: 229
Period size: 39 Copynumber: 4.6 Consensus size: 39
187485138 AATGTTCGAG
* * *
187485148 TGATATCTGGGCTAAGCCCGAAGGCAATTGTGC-AATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
187485186 TGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
187485225 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
187485264 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
187485304 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
187485329 TGTTTGAACG
Statistics
Matches: 126, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
38 31 0.25
39 55 0.44
40 40 0.32
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:187487017 original size:22 final size:22
Alignment explanation
Indices: 187486965--187487029 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
187486955 TTAAAGCCTT
* * *
187486965 CTGATTATGACTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
187486987 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
187487009 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
187487030 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:187487218 original size:27 final size:27
Alignment explanation
Indices: 187487188--187487289 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 27
187487178 ATTTTGTTAA
* *
187487188 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
*
187487215 GTGGCTATGCCATAAATATCTG-TTCTG
1 GTGGCTATGCCA-CAATATCTGTTTCTG
* *
187487242 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
** * *
187487269 GTGATTCTGTCACAATATCTG
1 GTGGCTATGCCACAATATCTG
187487290 ATAACTGAGC
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 8 0.12
27 49 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.38
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:187487464 original size:6 final size:6
Alignment explanation
Indices: 187487426--187487545 Score: 68
Period size: 6 Copynumber: 19.3 Consensus size: 6
187487416 TTGCATTCAC
* * *
187487426 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
187487476 -TTACTTG ATACTA ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTT
1 ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
187487526 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
187487546 AATGTTTCTT
Statistics
Matches: 86, Mismatches: 16, Indels: 24
0.68 0.13 0.19
Matches are distributed among these distances:
5 6 0.07
6 63 0.73
7 14 0.16
8 3 0.03
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:187487472 original size:31 final size:31
Alignment explanation
Indices: 187487426--187487561 Score: 141
Period size: 31 Copynumber: 4.4 Consensus size: 31
187487416 TTGCATTCAC
*
187487426 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
* * *
187487458 ATTCTGATTTTGATTCTGTTACTTGATACTA
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * *
187487489 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* *
187487520 ATTCTTATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
187487550 TTTCTTATTCTG
1 ATTCTGATTCTG
187487562 GAATGGGTTA
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
30 17 0.19
31 63 0.71
32 9 0.10
ACGTcount: A:0.20, C:0.16, G:0.13, T:0.51
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:187492880 original size:27 final size:27
Alignment explanation
Indices: 187492843--187492907 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
187492833 ATTACCAAAG
*
187492843 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
187492870 TATCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
187492897 TACCCTCGATT
1 TACCCTCGATT
187492908 GTGAAATTAC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.25, C:0.18, G:0.11, T:0.46
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:187492969 original size:27 final size:27
Alignment explanation
Indices: 187492939--187493147 Score: 143
Period size: 27 Copynumber: 7.7 Consensus size: 27
187492929 TATAGGGTAG
187492939 AATTACCAAAATACCCTTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
**
187492966 AATTACCAAAATACCAC-TAGTTTGCGA
1 AATTACCAAAATACC-CTTAGTTTGTAA
* * *
187492993 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * **
187493020 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * *
187493047 AATTA-TAGAAATACCCTTGACTTTCTAAA
1 AATTACCA-AAATACCCTT-AGTTTGT-AA
*** * * **
187493076 AATTATGGAAATACCATTGGTTTACAA
1 AATTACCAAAATACCCTTAGTTTGTAA
** * *
187493103 AATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
187493130 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
187493148 GTAGGATGAA
Statistics
Matches: 142, Mismatches: 34, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
26 2 0.01
27 116 0.82
28 8 0.06
29 16 0.11
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTGTAA
Found at i:187492979 original size:54 final size:53
Alignment explanation
Indices: 187492897--187493038 Score: 153
Period size: 54 Copynumber: 2.7 Consensus size: 53
187492887 ATTATTGTTT
* * ** *
187492897 TACCCTCGA-TTGTGAAATTACTGAAATACCCCTA-TAGGGTAGAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTAGCG-A-AATTACCAAAA
* * * * *
187492950 TACCCTTAGTTTGTAAAATTACCAAAATACCACTAGTTTGCGAAATTACCGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAG-TAGCGAAATTACCAAAA
187493004 TACCCTCAATTTGTAAAATTACCAAAATACCCCTA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTA
187493039 ATTTACAAAA
Statistics
Matches: 73, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
53 6 0.08
54 63 0.86
55 1 0.01
56 3 0.04
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.28
Consensus pattern (53 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTAGCGAAATTACCAAAA
Found at i:187493050 original size:54 final size:54
Alignment explanation
Indices: 187492939--187493119 Score: 173
Period size: 54 Copynumber: 3.3 Consensus size: 54
187492929 TATAGGGTAG
* * * * * *
187492939 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCACTAGTTTGCGA
1 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTAATTTACAA
*
187492993 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAA
1 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTAATTTACAA
** * * * *** * **
187493047 AATTATAGAAATACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTACAA
1 AATTACCGAAATACCC-TCAATTTGT-AAAATTACCAAAATACCACTAATTTACAA
*
187493103 AATTACTGAAATACCCT
1 AATTACCGAAATACCCT
187493120 TGGTTTGTAG
Statistics
Matches: 104, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
54 61 0.59
55 7 0.07
56 36 0.35
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (54 bp):
AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTAATTTACAA
Found at i:187493209 original size:27 final size:27
Alignment explanation
Indices: 187493179--187493270 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
187493169 ACCCCTATTA
*
187493179 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* ** *
187493206 GGTAAAGTGATTGTAAAGCCCCTATAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
187493233 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
187493260 GGTAAAATGAC
1 GGTAAAATGAC
187493271 GAATATGCCC
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:187494099 original size:26 final size:26
Alignment explanation
Indices: 187494070--187494270 Score: 289
Period size: 26 Copynumber: 7.8 Consensus size: 26
187494060 GAGGAAGTGC
*
187494070 AAAAGGGCTTATGCCCCATTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
187494096 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
187494122 AAAAAGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
187494148 AAAAGTGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
187494174 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
187494200 AAAAGGGCTTATACCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
187494226 AAAAAGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
187494251 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
187494271 ATTAAAGAGG
Statistics
Matches: 154, Mismatches: 21, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
25 31 0.20
26 123 0.80
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:187494149 original size:52 final size:52
Alignment explanation
Indices: 187494070--187494282 Score: 344
Period size: 52 Copynumber: 4.2 Consensus size: 52
187494060 GAGGAAGTGC
* *
187494070 AAAAGGGCTTATGCCCCATTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAAGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
*
187494122 AAAAAGGCTTATGCCCCAGTTTACCGAAAAGTGCTTATGCCCCAGTTTATTG
1 AAAAAGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
* *
187494174 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATACCCCAGTTTATTG
1 AAAAAGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
187494226 AAAAAGGCTT-TGCCCCAGTTTACCGAAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAAGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
*
187494274 AAAGAGGCT
1 AAAAAGGCT
187494283 AGGCCTCCAG
Statistics
Matches: 152, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
48 8 0.05
49 5 0.03
50 7 0.05
51 25 0.16
52 107 0.70
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (52 bp):
AAAAAGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
Found at i:187494474 original size:42 final size:42
Alignment explanation
Indices: 187494415--187494506 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
187494405 TAGTCTCCCC
* ** *
187494415 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
*
187494457 AAATGGGCTTGTATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
187494499 AAATGGGC
1 AAATGGGC
187494507 CTAAGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:187494565 original size:31 final size:31
Alignment explanation
Indices: 187494530--187494610 Score: 144
Period size: 31 Copynumber: 2.6 Consensus size: 31
187494520 CATTTACAGT
*
187494530 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTAATATGATTTATGA
187494561 AAAGGCTTCGGCCCAGTAATATGATTTATGA
1 AAAGGCTTCGGCCCAGTAATATGATTTATGA
*
187494592 AAAGGCTTCGGTCCAGTAA
1 AAAGGCTTCGGCCCAGTAA
187494611 CCGTTAAACG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGATTTATGA
Found at i:187501962 original size:47 final size:47
Alignment explanation
Indices: 187501894--187502109 Score: 369
Period size: 47 Copynumber: 4.6 Consensus size: 47
187501884 CCTGTATATA
* *
187501894 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
187501941 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
187501988 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
**
187502035 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
* * *
187502082 TATATGTGGTAAGGCCGAATGGCTAATG
1 TATGTGTGATAAGGCCGAATGGCCAATG
187502110 CGAAATGTGT
Statistics
Matches: 162, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 162 1.00
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
Found at i:187502149 original size:46 final size:46
Alignment explanation
Indices: 187502083--187502172 Score: 135
Period size: 46 Copynumber: 2.0 Consensus size: 46
187502073 GAACATGTAT
* * *
187502083 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATAG
* *
187502129 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGAT
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGAT
187502173 GTATATATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATAG
Found at i:187504994 original size:40 final size:40
Alignment explanation
Indices: 187504456--187504975 Score: 884
Period size: 40 Copynumber: 13.1 Consensus size: 40
187504446 AGTTGTATAG
* * * *
187504456 CCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
187504496 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
187504536 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
187504576 CCGGACTAAATCCCGAAGAGCATTTGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
187504616 CCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
187504656 CCGGACTAAATCCCGAAGAGCATTTGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
187504696 CCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
187504736 CCGGACTAAAT-CCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
187504775 CCGGACTAAAT-CCGAAGAGCATTTGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
187504814 CCGGACTAAATCCCG-AGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
187504853 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
187504893 CCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
187504933 CTGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
187504973 CCG
1 CCG
187504976 AGCTGGGTCC
Statistics
Matches: 457, Mismatches: 21, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
39 115 0.25
40 342 0.75
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:187508513 original size:47 final size:47
Alignment explanation
Indices: 187508445--187508660 Score: 369
Period size: 47 Copynumber: 4.6 Consensus size: 47
187508435 CCTGTATATA
* *
187508445 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
187508492 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
187508539 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
**
187508586 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
* * *
187508633 TATATGTGGTAAGGCCGAATGGCTAATG
1 TATGTGTGATAAGGCCGAATGGCCAATG
187508661 CGAAATGTGT
Statistics
Matches: 162, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 162 1.00
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
Found at i:187508700 original size:46 final size:46
Alignment explanation
Indices: 187508634--187508723 Score: 135
Period size: 46 Copynumber: 2.0 Consensus size: 46
187508624 GAACATGTAT
* * *
187508634 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATAG
* *
187508680 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGAT
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGAT
187508724 GTATATATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATAG
Found at i:187508732 original size:2 final size:2
Alignment explanation
Indices: 187508725--187508751 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
187508715 GTATGAGATG
187508725 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
187508752 TGTGGCCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:187511775 original size:59 final size:59
Alignment explanation
Indices: 187511683--187511814 Score: 219
Period size: 59 Copynumber: 2.2 Consensus size: 59
187511673 GACAAGATTG
* * * *
187511683 GCACTAAGTGTGCGGGTTTAAAATTGTATAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAACTGAAAATATATA
*
187511742 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAACTGAAAATATATA
187511801 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
187511815 GATTCACTAT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 68 1.00
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.27
Consensus pattern (59 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:187511826 original size:29 final size:29
Alignment explanation
Indices: 187511683--187511814 Score: 201
Period size: 30 Copynumber: 4.5 Consensus size: 29
187511673 GACAAGATTG
* * * *
187511683 GCACTAAGTGTGCGGGTTTAAAATTGTATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
*
187511713 GCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
187511742 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
187511772 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
187511801 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
187511815 GATTCACTAT
Statistics
Matches: 95, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
29 47 0.49
30 48 0.51
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.27
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:187519682 original size:59 final size:60
Alignment explanation
Indices: 187519589--187519721 Score: 214
Period size: 59 Copynumber: 2.2 Consensus size: 60
187519579 GACAAGATTG
* * *
187519589 GCACTAAGTGTGCGGGTTTAAAAATTGTATAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATATAGCACTAAGTGTGCGAACTGAAAATATATA
* *
187519649 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATATAGCACTAAGTGTGCGAACTGAAAATATATA
187519708 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
187519722 GATTCACTAT
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
59 53 0.78
60 15 0.22
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATATAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:187519733 original size:29 final size:29
Alignment explanation
Indices: 187519589--187519721 Score: 194
Period size: 29 Copynumber: 4.5 Consensus size: 29
187519579 GACAAGATTG
* * * *
187519589 GCACTAAGTGTGCGGGTTTAAAAATTGTATA
1 GCACTAAGTGTGCGAG-CTGAAAA-TATATA
*
187519620 GCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
187519649 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
187519679 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
187519708 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
187519722 GATTCACTAT
Statistics
Matches: 95, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
29 47 0.49
30 34 0.36
31 14 0.15
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:187521848 original size:41 final size:41
Alignment explanation
Indices: 187521803--187521920 Score: 96
Period size: 41 Copynumber: 3.1 Consensus size: 41
187521793 TGAAAGATAA
187521803 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * * * *
187521844 ATGTAG--A-----CAAGAGAGA-T--ACGTGAAAGATA-A
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
187521874 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
187521915 ATGTAG
1 ATGTAG
187521921 ACAAGAGAGC
Statistics
Matches: 52, Mismatches: 14, Indels: 22
0.59 0.16 0.25
Matches are distributed among these distances:
30 6 0.12
31 9 0.17
32 1 0.02
33 1 0.02
34 6 0.12
37 6 0.12
38 1 0.02
39 1 0.02
40 9 0.17
41 12 0.23
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:187521864 original size:71 final size:71
Alignment explanation
Indices: 187521771--187521934 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
187521761 GAGATGTATC
187521771 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
187521836 AGGACA
66 AGGACA
*
187521842 CCATGTAGACAAGAGAGATACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
187521907 AGGACA
66 AGGACA
187521913 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
187521935 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:187526109 original size:8 final size:8
Alignment explanation
Indices: 187526096--187526123 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
187526086 GATAGCTCAT
187526096 TTTTCAGC
1 TTTTCAGC
187526104 TTTTCAGC
1 TTTTCAGC
187526112 TTTTCAGC
1 TTTTCAGC
187526120 TTTT
1 TTTT
187526124 GCCATTTCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.11, C:0.21, G:0.11, T:0.57
Consensus pattern (8 bp):
TTTTCAGC
Found at i:187528255 original size:20 final size:20
Alignment explanation
Indices: 187528230--187528267 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
187528220 AGTTCATACT
187528230 AACTTACCTCGATAACTACA
1 AACTTACCTCGATAACTACA
187528250 AACTTACCTCGATAACTA
1 AACTTACCTCGATAACTA
187528268 TTGTTGCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.29, G:0.05, T:0.26
Consensus pattern (20 bp):
AACTTACCTCGATAACTACA
Found at i:187528824 original size:21 final size:21
Alignment explanation
Indices: 187528800--187528840 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
187528790 AAAATAATCA
187528800 AAACGAAATTAAAATTACTTG
1 AAACGAAATTAAAATTACTTG
*
187528821 AAACGAAATTAGAATTACTT
1 AAACGAAATTAAAATTACTT
187528841 ACATGCAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.51, C:0.10, G:0.10, T:0.29
Consensus pattern (21 bp):
AAACGAAATTAAAATTACTTG
Found at i:187529487 original size:16 final size:16
Alignment explanation
Indices: 187529466--187529497 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
187529456 CATATTCACC
*
187529466 CAAAATAAGCAAATAG
1 CAAAATAAGAAAATAG
187529482 CAAAATAAGAAAATAG
1 CAAAATAAGAAAATAG
187529498 GCGGATTGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.66, C:0.09, G:0.12, T:0.12
Consensus pattern (16 bp):
CAAAATAAGAAAATAG
Found at i:187536754 original size:40 final size:40
Alignment explanation
Indices: 187536705--187536952 Score: 268
Period size: 40 Copynumber: 6.2 Consensus size: 40
187536695 TCTTCGGAAT
* * *
187536705 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
187536744 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
187536784 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGAGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
187536824 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCAGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
* * * *
187536864 TTAGCCCGGGTATAACAACTCGCACGAATGCCTTTGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
187536904 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
187536944 TTAGCCCGG
1 TTAGCCCGG
187536953 GTATCATTCA
Statistics
Matches: 169, Mismatches: 36, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
39 4 0.02
40 163 0.96
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:187536832 original size:80 final size:80
Alignment explanation
Indices: 187536696--187536952 Score: 338
Period size: 80 Copynumber: 3.2 Consensus size: 80
187536686 AACCGAGTCT
* * * ** * * **
187536696 CTTCGGAATTTAG-CCGGATATAACCACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAA
* * *
187536759 TAACTTGCACAAATGC
65 TCACTAGCATAAATGC
* *
187536775 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGAGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
187536840 CACTAGCATAAATGC
66 CACTAGCATAAATGC
* * *
187536855 CTTCAGGACTTAGCCCGGGTATAACAACTCGCACGAATGCCTTTGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
187536920 CACTAGCATAAATGC
66 CACTAGCATAAATGC
187536935 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
187536953 GTATCATTCA
Statistics
Matches: 156, Mismatches: 20, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
79 10 0.06
80 144 0.92
81 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
CACTAGCATAAATGC
Found at i:187536953 original size:80 final size:80
Alignment explanation
Indices: 187536732--187536956 Score: 342
Period size: 80 Copynumber: 2.8 Consensus size: 80
187536722 CAAGCACAAT
* * ** * * * * *
187536732 TGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
187536797 AACAACTCGCACGAA
66 AACAACTCGCACGAA
* *
187536812 TGCCTTCGAGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCAGGACTTAGCCCGGGTAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
187536877 AACAACTCGCACGAA
66 AACAACTCGCACGAA
*
187536892 TGCCTTTGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
187536957 CATTCAAATG
Statistics
Matches: 131, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
80 131 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
AACAACTCGCACGAA
Found at i:187556348 original size:110 final size:110
Alignment explanation
Indices: 187556155--187556374 Score: 440
Period size: 110 Copynumber: 2.0 Consensus size: 110
187556145 ATTATGTGAG
187556155 ATGAAATATGGATGTGTATGATTATTGATTATGTGTGTATGAGTATTTGAATTCCACCCGGGCTA
1 ATGAAATATGGATGTGTATGATTATTGATTATGTGTGTATGAGTATTTGAATTCCACCCGGGCTA
187556220 AGTCCCGAAGGCGAATATGCTAATGATTACAATTGTGTTTGAGCC
66 AGTCCCGAAGGCGAATATGCTAATGATTACAATTGTGTTTGAGCC
187556265 ATGAAATATGGATGTGTATGATTATTGATTATGTGTGTATGAGTATTTGAATTCCACCCGGGCTA
1 ATGAAATATGGATGTGTATGATTATTGATTATGTGTGTATGAGTATTTGAATTCCACCCGGGCTA
187556330 AGTCCCGAAGGCGAATATGCTAATGATTACAATTGTGTTTGAGCC
66 AGTCCCGAAGGCGAATATGCTAATGATTACAATTGTGTTTGAGCC
187556375 TTAGTAACGA
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 110 1.00
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.35
Consensus pattern (110 bp):
ATGAAATATGGATGTGTATGATTATTGATTATGTGTGTATGAGTATTTGAATTCCACCCGGGCTA
AGTCCCGAAGGCGAATATGCTAATGATTACAATTGTGTTTGAGCC
Found at i:187556530 original size:40 final size:40
Alignment explanation
Indices: 187556443--187556673 Score: 217
Period size: 40 Copynumber: 5.8 Consensus size: 40
187556433 AATTGAATGA
* * * **
187556443 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* * *
187556483 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
187556524 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
* *
187556563 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
187556604 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
187556643 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
187556674 AAATCGTGAT
Statistics
Matches: 158, Mismatches: 19, Indels: 28
0.77 0.09 0.14
Matches are distributed among these distances:
38 2 0.01
39 10 0.06
40 138 0.87
41 7 0.04
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:187556656 original size:120 final size:119
Alignment explanation
Indices: 187556486--187556705 Score: 291
Period size: 120 Copynumber: 1.8 Consensus size: 119
187556476 GAAATTATAA
* *
187556486 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GCTACATCCGGGCTAAGACCCGAAGGCATTCG
* * **
187556551 TGCGAGTCATTCTATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAT
65 TGCAAATCATGATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAT
*
187556606 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT-CATTCTATCCGGGCTAAGACCCGAAGGCATT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGC-TAC-ATCCGGGCTAAGACCCGAAGGCATT
* * * *
187556669 TGTGCAAATCGTGATATCCGGGTTAAGTCCCGTAGGC
63 CGTGCAAATCATGATATCCGGGTTAAGACCCGAAGGC
187556706 CTTGGTGCGG
Statistics
Matches: 86, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
118 1 0.01
119 5 0.06
120 80 0.93
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.22
Consensus pattern (119 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGCTACATCCGGGCTAAGACCCGAAGGCATTCGT
GCAAATCATGATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAT
Found at i:187556687 original size:40 final size:39
Alignment explanation
Indices: 187556442--187556705 Score: 199
Period size: 40 Copynumber: 6.6 Consensus size: 39
187556432 AAATTGAATG
* * * *
187556442 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAGTCGT
* * * * *
187556482 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG-T
* * * *
187556522 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTC-GT
* * * * *
187556562 CTATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG-T
* * * *
187556602 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTC-GT
* *
187556642 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGT
* * *
187556681 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
187556706 CTTGGTGCGG
Statistics
Matches: 175, Mismatches: 42, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
37 4 0.02
38 2 0.01
39 3 0.02
40 166 0.95
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGT
Found at i:187556714 original size:80 final size:80
Alignment explanation
Indices: 187556486--187556673 Score: 358
Period size: 80 Copynumber: 2.4 Consensus size: 80
187556476 GAAATTATAA
187556486 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCG
187556551 TGCGAGTCATTCTAT
66 TGCGAGTCATTCTAT
187556566 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCG
187556631 TGCGAGTCATTCTAT
66 TGCGAGTCATTCTAT
* *
187556646 CCGGGCTAAGACCCGAAGGCATTTGTGC
1 CCGGGTTAAGACCCGAAGGCAATTGTGC
187556674 AAATCGTGAT
Statistics
Matches: 106, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 106 1.00
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (80 bp):
CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATTCTAT
Found at i:187556730 original size:120 final size:120
Alignment explanation
Indices: 187556439--187556769 Score: 286
Period size: 120 Copynumber: 2.8 Consensus size: 120
187556429 GAGAAATTGA
* * * * ** * *
187556439 ATGATATCCGGGCTAAGCCCCGAAGACAATTATGC--TGGAAATTATAACCGGGTTAAGACCCGA
1 ATGATATCCGGGTTAAGACCCGAAGGCAATTGTGCAGTGGCTA-CATAACCGGGCTAAGACCCGA
* * *
187556502 AGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTC
65 AGGCAATTGTGCGAGT-GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATC
**
187556559 ATTCTATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAT--CCGGGCTAAGACCCGA
1 ATGATATCCGGGTTAAGACCCGAAGGCAATTGTGC-AGTGGCTACATAACCGGGCTAAGACCCGA
* *
187556622 AGGC-ATTCGTGCGAGT-CATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC
65 AGGCAATT-GTGCGAGTGC-TAC-ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATC
* * * * * * *
187556679 GTGATATCCGGGTTAAGTCCCGTAGGC-CTTGGTGC-G-GGTTACCATAACCGGGCTATGTCCCG
1 ATGATATCCGGGTTAAGACCCGAAGGCAATT-GTGCAGTGGCTA-CATAACCGGGCTAAGACCCG
* *
187556741 AAGGCGATTGAT-CGAGTAGCGACATCCGG
64 AAGGCAATTG-TGCGAGT-GCTACATCCGG
187556770 TTAAACTCCG
Statistics
Matches: 171, Mismatches: 26, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
117 4 0.02
118 5 0.03
119 7 0.04
120 143 0.84
121 5 0.03
122 3 0.02
123 4 0.02
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (120 bp):
ATGATATCCGGGTTAAGACCCGAAGGCAATTGTGCAGTGGCTACATAACCGGGCTAAGACCCGAA
GGCAATTGTGCGAGTGCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATC
Found at i:187560006 original size:31 final size:31
Alignment explanation
Indices: 187559958--187560072 Score: 205
Period size: 31 Copynumber: 3.7 Consensus size: 31
187559948 TTAGTCTTGA
*
187559958 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
187559988 CATATCACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
187560019 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
187560050 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
187560073 ACTGTAAACG
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 5 0.06
31 76 0.94
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:187560147 original size:42 final size:42
Alignment explanation
Indices: 187560096--187560187 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
187560086 TGGCCCTTAG
*
187560096 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
187560138 GCCTATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
187560180 GCCCATTT
1 GCCCATTT
187560188 GGGGAGACTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:187560363 original size:25 final size:25
Alignment explanation
Indices: 187560335--187560404 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
187560325 CTCTTTTAAT
187560335 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
187560360 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
187560385 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
187560405 AGCATTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:187561365 original size:27 final size:27
Alignment explanation
Indices: 187561335--187561468 Score: 96
Period size: 27 Copynumber: 4.9 Consensus size: 27
187561325 GTAAATCTAC
187561335 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
187561362 AAACCAATGGTATATTTA-TAATTTT-T
1 AAACCAAGGGTAT-TTCAGTAATTTTGT
*
187561388 AAAAAGTCAAGGGTATTTCTA-TAATTTTGT
1 --AAA-CCAAGGGTATTTC-AGTAATTTTGT
* * * **
187561418 AAATCAGGGGTATTTTAGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
**
187561445 AAAATAAGGGTATTTC-GATAATTT
1 AAACCAAGGGTATTTCAG-TAATTT
187561469 CACAAACCAG
Statistics
Matches: 86, Mismatches: 13, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
26 3 0.03
27 55 0.64
28 11 0.13
29 16 0.19
30 1 0.01
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:187561430 original size:56 final size:54
Alignment explanation
Indices: 187561312--187561501 Score: 174
Period size: 54 Copynumber: 3.5 Consensus size: 54
187561302 TTTCATCCTA
* * * * *
187561312 CAAGGGTGTTTTGGTAAATCTAC-AAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAATCAAGGGTATTTCA-TAATTTTGTAAAC
* *
187561366 CAATGGTATATTTA-TAATTTTTA-AAAAGTCAAGGGTATTTCTATAATTTTGTAAAT
1 CAAGGGTAT-TTTAGTAA-TTTTACAAAA-TCAAGGGTATTTC-ATAATTTTGTAAAC
* ***
187561422 CAGGGGTATTTTAGTAATTTTACAAAAT-AAGGGTATTTCGATAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAATCAAGGGTATTTC-ATAATTTTGTAAAC
*
187561476 C-AGTGGTATTTTGGTAATTTTACAAA
1 CAAG-GGTATTTTAGTAATTTTACAAA
187561502 CTAGGGGTAT
Statistics
Matches: 112, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
53 1 0.01
54 53 0.47
55 19 0.17
56 38 0.34
57 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.38
Consensus pattern (54 bp):
CAAGGGTATTTTAGTAATTTTACAAAATCAAGGGTATTTCATAATTTTGTAAAC
Found at i:187561460 original size:54 final size:53
Alignment explanation
Indices: 187561340--187561513 Score: 190
Period size: 54 Copynumber: 3.2 Consensus size: 53
187561330 TCTACAAACC
*
187561340 AAGGGTATTTCAGTAATTTTGTAAACCAATGGTATATTTA-TAATTTTTA-AAAAGT
1 AAGGGTATTTCA-TAATTTTGTAAACCAGTGGTAT-TTTAGTAA-TTTTACAAAA-T
* *
187561395 CAAGGGTATTTCTATAATTTTGTAAATCAGGGGTATTTTAGTAATTTTACAAAAT
1 -AAGGGTATTTC-ATAATTTTGTAAACCAGTGGTATTTTAGTAATTTTACAAAAT
*** * *
187561450 AAGGGTATTTCGATAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTC-ATAATTTTGTAAACCAGTGGTATTTTAGTAATTTTACAAAAT
*
187561504 AGGGGTATTT
1 AAGGGTATTT
187561514 TGGTAATTCT
Statistics
Matches: 103, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
54 55 0.53
55 10 0.10
56 37 0.36
57 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.40
Consensus pattern (53 bp):
AAGGGTATTTCATAATTTTGTAAACCAGTGGTATTTTAGTAATTTTACAAAAT
Found at i:187561483 original size:27 final size:27
Alignment explanation
Indices: 187561398--187561513 Score: 81
Period size: 27 Copynumber: 4.3 Consensus size: 27
187561388 AAAAAGTCAA
* *** *
187561398 GGGTATTTCTATAATTTTGTAAATCAG
1 GGGTATTTCGATAATTTCACAAACCAG
* * ** *
187561425 GGGTATTT-TAGTAATTTTACAAAATAA
1 GGGTATTTCGA-TAATTTCACAAACCAG
187561452 GGGTATTTCGATAATTTCACAAACCAG
1 GGGTATTTCGATAATTTCACAAACCAG
* * * * *
187561479 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTCGATAATTTCACAAACCAG
187561506 GGGTATTT
1 GGGTATTT
187561514 TGGTAATTCT
Statistics
Matches: 71, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
26 2 0.03
27 68 0.96
28 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGATAATTTCACAAACCAG
Found at i:187561514 original size:27 final size:27
Alignment explanation
Indices: 187561423--187561521 Score: 126
Period size: 27 Copynumber: 3.7 Consensus size: 27
187561413 TTTGTAAATC
* *
187561423 AGGGGTATTTTAGTAATTTTACAAAAT
1 AGGGGTATTTTGGTAATTTTACAAACT
* * * * *
187561450 AAGGGTATTTCGATAATTTCACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
*
187561477 AGTGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
187561504 AGGGGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
187561522 CTACCCTATA
Statistics
Matches: 58, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:187561561 original size:27 final size:27
Alignment explanation
Indices: 187561419--187561561 Score: 82
Period size: 27 Copynumber: 5.3 Consensus size: 27
187561409 TAATTTTGTA
*
187561419 AATC-AGGGGTATTTTAGTAATTTTACAA
1 AATCAAGGGGTATTTTAGTAA-TTT-CAC
*
187561447 AAT-AA-GGGTA-TTTCGATAATTTCAC
1 AATCAAGGGGTATTTTAG-TAATTTCAC
* * * * *
187561472 AAACCAGTGGTATTTTGGTAATTTTAC
1 AATCAAGGGGTATTTTAGTAATTTCAC
* * *
187561499 AAACTAGGGGTATTTTGGTAA-TTCTAC
1 AATCAAGGGGTATTTTAGTAATTTC-AC
** *
187561526 CCT-ATAGGGGTATTTCAGTAATTTCAC
1 AATCA-AGGGGTATTTTAGTAATTTCAC
187561553 AATCAAGGG
1 AATCAAGGG
187561562 TAAAACGGTA
Statistics
Matches: 88, Mismatches: 18, Indels: 19
0.70 0.14 0.15
Matches are distributed among these distances:
25 4 0.05
26 10 0.11
27 62 0.70
28 12 0.14
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (27 bp):
AATCAAGGGGTATTTTAGTAATTTCAC
Found at i:187561583 original size:27 final size:27
Alignment explanation
Indices: 187561553--187561644 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
187561543 GTAATTTCAC
* *
187561553 AATCAAGGGTAAAACGGTAATTTTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
*
187561580 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* *
187561607 AATCAAGGGTAAAACAGTGATTCTATA
1 AATCAAGGGTAAAACAGTAATTCTGTA
*
187561634 AATCTAGGGTA
1 AATCAAGGGTA
187561645 CTTTGGTAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCAAGGGTAAAACAGTAATTCTGTA
Found at i:187561876 original size:17 final size:17
Alignment explanation
Indices: 187561854--187561897 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
187561844 AACTTATCCA
*
187561854 ATTGGGCTCATAGGCCC
1 ATTGGGCCCATAGGCCC
187561871 ATTGGGCCCATAGGCCC
1 ATTGGGCCCATAGGCCC
187561888 ATTGGGCCCA
1 ATTGGGCCCA
187561898 CATGGCCCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.20
Consensus pattern (17 bp):
ATTGGGCCCATAGGCCC
Found at i:187565925 original size:40 final size:40
Alignment explanation
Indices: 187565868--187566008 Score: 176
Period size: 40 Copynumber: 3.5 Consensus size: 40
187565858 TGAATGATAC
* *
187565868 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
* * *
187565908 CTGGGCTAAGAGCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* * *
187565948 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* *
187565988 CCGAGTTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
187566009 ATTGTGCTTG
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 87 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:187566025 original size:80 final size:80
Alignment explanation
Indices: 187565868--187566028 Score: 189
Period size: 80 Copynumber: 2.0 Consensus size: 80
187565858 TGAATGATAC
* * * * * * * *
187565868 CCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATATCTGGGCTAAGAGCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGAGCTAAGACCCGAAGGCAATTG
*
187565933 TGCGAGTTGTTATAT
66 TGCGAGTGGTTATAT
* *
187565948 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGAGTTAAGACCCGAAGGCAATT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGAGCTAAGACCCGAAGGCAATT
**
187566012 GTGCTTGTGGTTATAT
65 GTGCGAGTGGTTATAT
187566028 C
1 C
187566029 TGGCTAAATT
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
80 65 0.97
81 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGAGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:187574460 original size:40 final size:40
Alignment explanation
Indices: 187574415--187574582 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
187574405 CGGAATATAA
187574415 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
187574455 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
187574495 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
187574535 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
187574575 CCGGATAT
1 CCGGATAT
187574583 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:187582440 original size:40 final size:40
Alignment explanation
Indices: 187582395--187582561 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
187582385 CGGAATATAA
187582395 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
187582435 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
187582475 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
187582515 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
187582554 CCGGATAT
1 CCGGATAT
187582562 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:187591174 original size:9 final size:9
Alignment explanation
Indices: 187591162--187591238 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
187591152 TTTGATAAAC
187591162 ATGATATGT
1 ATGATATGT
*
187591171 ATGATATGCAC
1 ATGATATG--T
187591182 ATGATATGT
1 ATGATATGT
*
187591191 ATGATATGCAC
1 ATGATATG--T
*
187591202 ATGACATGT
1 ATGATATGT
*
187591211 ATGATATGCAC
1 ATGATATG--T
187591222 ATGATATGT
1 ATGATATGT
187591231 ATGATATG
1 ATGATATG
187591239 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:187591187 original size:11 final size:11
Alignment explanation
Indices: 187591171--187591242 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
187591161 CATGATATGT
187591171 ATGATATGCAC
1 ATGATATGCAC
*
187591182 ATGATATG--T
1 ATGATATGCAC
187591191 ATGATATGCAC
1 ATGATATGCAC
* *
187591202 ATGACATG--T
1 ATGATATGCAC
187591211 ATGATATGCAC
1 ATGATATGCAC
*
187591222 ATGATATG--T
1 ATGATATGCAC
187591231 ATGATATGCAC
1 ATGATATGCAC
187591242 A
1 A
187591243 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:187591250 original size:20 final size:20
Alignment explanation
Indices: 187591160--187591242 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
187591150 ATTTTGATAA
187591160 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
187591180 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
187591200 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
187591220 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
187591240 ACA
1 ACA
187591243 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:187591371 original size:47 final size:48
Alignment explanation
Indices: 187591296--187591416 Score: 210
Period size: 47 Copynumber: 2.6 Consensus size: 48
187591286 GAGGAAGTGC
187591296 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATGA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATGA
* *
187591344 TAAAGGGCTTATG-CCCAGTTATTAAAGGGCTTATGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATGA
187591391 AAAAGGGCTT-TGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
187591417 AGAGGCTAGG
Statistics
Matches: 69, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
46 2 0.03
47 55 0.80
48 12 0.17
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATGA
Found at i:187591423 original size:24 final size:24
Alignment explanation
Indices: 187591296--187591437 Score: 195
Period size: 23 Copynumber: 6.0 Consensus size: 24
187591286 GAGGAAGTGC
187591296 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
187591320 -AAAGGGCTTATGCCCCAGTTATG
1 AAAAGGGCTTATGCCCCAGTTATT
187591343 ATAAAGGGCTTATG-CCCAGTTATT
1 A-AAAGGGCTTATGCCCCAGTTATT
187591367 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
187591390 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
187591414 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
187591438 ATGATAAAGC
Statistics
Matches: 107, Mismatches: 3, Indels: 15
0.86 0.02 0.12
Matches are distributed among these distances:
22 12 0.11
23 38 0.36
24 28 0.26
25 29 0.27
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:187609999 original size:135 final size:134
Alignment explanation
Indices: 187609796--187610140 Score: 422
Period size: 135 Copynumber: 2.6 Consensus size: 134
187609786 TGTATCTGAC
** * * * *
187609796 CTGCTCCACTTTTGTTCAGCGGAGATAAGATCTGATATATTTAGCCTGCTTCACTCCTGCTCATT
1 CTGCTCCACTCCTGCTCAGCGAAGATAAGATCT-ATATATTTAGCCTGCTTCACTCCTACTCAGT
** * *
187609861 GAAGATAAGTCTGATGATTGGAATCTGCTCCATCGCTAG-TACAGGGAGATAAGATTCACCAAAA
65 GAAGATAAGGATGATGATTAGAATCTGCTCCATCGC-AGATACAGGGAGATAAGACTCACCAAAA
187609925 TTCGAT
129 TTCGAT
* * *
187609931 CTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTACTATACTTAGCCTGCTTCACTGCTACTCAGT
1 CTGCTCCACTCCTGCTCAGCGAAGATAAGATCTA-TATATTTAGCCTGCTTCACTCCTACTCAGT
* * * *
187609996 GAAGATAAGGATGATGATTAGAATCTGCTCCATTGCCGATACATGGAGATAAGACTCGCCAAAAT
65 GAAGATAAGGATGATGATTAGAATCTGCTCCATCGCAGATACAGGGAGATAAGACTCACCAAAAT
*
187610061 TTGAT
130 TCGAT
* * * ** * *
187610066 CTGCTTCACTCCTGCTCAGTGAAGAAAAGATCGGGTATGTTTAGCCTGCTCCACTCCTACTCAGT
1 CTGCTCCACTCCTGCTCAGCGAAGATAAGATC-TATATATTTAGCCTGCTTCACTCCTACTCAGT
187610131 GAAGATAAGG
65 GAAGATAAGG
187610141 CTGGTGGCTG
Statistics
Matches: 179, Mismatches: 28, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
134 2 0.01
135 177 0.99
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (134 bp):
CTGCTCCACTCCTGCTCAGCGAAGATAAGATCTATATATTTAGCCTGCTTCACTCCTACTCAGTG
AAGATAAGGATGATGATTAGAATCTGCTCCATCGCAGATACAGGGAGATAAGACTCACCAAAATT
CGAT
Found at i:187610173 original size:44 final size:44
Alignment explanation
Indices: 187610111--187610230 Score: 204
Period size: 44 Copynumber: 2.7 Consensus size: 44
187610101 TATGTTTAGC
* *
187610111 CTGCTCCACTCCTACTCAGTGAAGATAAGGCTGGTGGCTGAAAT
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGACTGGTGGCTGAAAT
*
187610155 TTGCTCCACTCCTGCTCAGTGAAGATAAGACTGGTGGCTGAAAT
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGACTGGTGGCTGAAAT
*
187610199 CTGCTCCACTCCTGCTCAGTAAAGATAAGACT
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGACT
187610231 CGCCAAAATT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 71 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (44 bp):
CTGCTCCACTCCTGCTCAGTGAAGATAAGACTGGTGGCTGAAAT
Found at i:187610181 original size:135 final size:134
Alignment explanation
Indices: 187609796--187610186 Score: 382
Period size: 135 Copynumber: 2.9 Consensus size: 134
187609786 TGTATCTGAC
** * * * * *
187609796 CTGCTCCACTTTTGTTCAGCGGAGATAAGATCTGA-TATATTTAGCCTGCTTCACTCCTGCTCAT
1 CTGCTCCACTCCTGCTCAGCGAAGAAAAGATC-GACTATATTTAGCCTGCTTCACTCCTACTCAG
* * *
187609860 TGAAGATAAGTCTGAT-GATTGGAATCTGCTCCATCGCTAGTACAG-GGAGATAAGATTCACCAA
65 TGAAGATAAGGCTGATGGA-TGAAATCTGCTCCATC-CT-GTACAGTGGAGATAAGACTCACCAA
187609923 AATTCGAT
127 AATTCGAT
* * * * *
187609931 CTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTACTATACTTAGCCTGCTTCACTGCTACTCAGT
1 CTGCTCCACTCCTGCTCAGCGAAGAAAAGATCGACTATATTTAGCCTGCTTCACTCCTACTCAGT
* * *
187609996 GAAGATAAGGATGAT-GATTAGAATCTGCTCCATTGCC-GATACA-TGGAGATAAGACTCGCCAA
66 GAAGATAAGGCTGATGGATGA-AATCTGCTCCA-T-CCTG-TACAGTGGAGATAAGACTCACCAA
*
187610058 AATTTGAT
127 AATTCGAT
* * ** * *
187610066 CTGCTTCACTCCTGCTCAGTGAAGAAAAGATCGGGTATGTTTAGCCTGCTCCACTCCTACTCAGT
1 CTGCTCCACTCCTGCTCAGCGAAGAAAAGATCGACTATATTTAGCCTGCTTCACTCCTACTCAGT
* * * *
187610131 GAAGATAAGGCTGGTGGCTGAAATTTGCTCCACTCCTGCT-CAGTGAAGATAAGACT
66 GAAGATAAGGCTGATGGATGAAATCTGCTCCA-TCCTG-TACAGTGGAGATAAGACT
187610187 GGTGGCTGAA
Statistics
Matches: 211, Mismatches: 36, Indels: 18
0.80 0.14 0.07
Matches are distributed among these distances:
134 7 0.03
135 198 0.94
136 5 0.02
137 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (134 bp):
CTGCTCCACTCCTGCTCAGCGAAGAAAAGATCGACTATATTTAGCCTGCTTCACTCCTACTCAGT
GAAGATAAGGCTGATGGATGAAATCTGCTCCATCCTGTACAGTGGAGATAAGACTCACCAAAATT
CGAT
Found at i:187610310 original size:45 final size:45
Alignment explanation
Indices: 187610066--187610318 Score: 182
Period size: 45 Copynumber: 5.6 Consensus size: 45
187610056 AAAATTTGAT
* *
187610066 CTGCTTCACTCCTGCTCAGTGAAGAAAAGATCGGGTATGTTTAGC
1 CTGCTTCACTCCTGCTCAGTGAAGATAAGATCGGGTAAGTTTAGC
* * * * *
187610111 CTGCTCCACTCCTACTCAGTGAAGATAAGGCTGGTGGCTGAAATTT-G-
1 CTGCTTCACTCCTGCTCAGTGAAGATAA-GATCG-GG-T-AAGTTTAGC
* * ** **
187610158 CT-C--CACTCCTGCTCAGTGAAGATAAGA-CTGGT-GGCTGAAAT
1 CTGCTTCACTCCTGCTCAGTGAAGATAAGATCGGGTAAG-TTTAGC
* * *** * *
187610199 CTGCTCCACTCCTGCTCAGTAAAGATAAGACTCGCCAAAATTT-GAT
1 CTGCTTCACTCCTGCTCAGTGAAGATAAGA-TCGGGTAAGTTTAG-C
*
187610245 CTGCTTCACTCCTGCTCAGTGAAGATAAGATCGGGTATGTTTAGCC
1 CTGCTTCACTCCTGCTCAGTGAAGATAAGATCGGGTAAGTTTAG-C
187610291 CT-CTTCACTCCTGCTCAGTGAAGATAAG
1 CTGCTTCACTCCTGCTCAGTGAAGATAAG
187610319 GCTGATGATA
Statistics
Matches: 158, Mismatches: 35, Indels: 30
0.71 0.16 0.13
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 4 0.03
42 1 0.01
43 1 0.01
44 44 0.28
45 58 0.37
46 38 0.24
47 4 0.03
48 2 0.01
49 4 0.03
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (45 bp):
CTGCTTCACTCCTGCTCAGTGAAGATAAGATCGGGTAAGTTTAGC
Found at i:187618028 original size:21 final size:21
Alignment explanation
Indices: 187618004--187618048 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
187617994 GCTGGCTCAT
*
187618004 CATGTTGTTCTGTGACTCCAG
1 CATGTTGTTCTGGGACTCCAG
* *
187618025 CATGTTTTTCTGGGACTCTAG
1 CATGTTGTTCTGGGACTCCAG
187618046 CAT
1 CAT
187618049 TTGATCCTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (21 bp):
CATGTTGTTCTGGGACTCCAG
Found at i:187624432 original size:20 final size:20
Alignment explanation
Indices: 187624409--187624446 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
187624399 CACATCCAAA
*
187624409 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
187624429 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
187624447 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:187630751 original size:26 final size:28
Alignment explanation
Indices: 187630685--187630751 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
187630675 TTTAAAACCC
*
187630685 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
187630712 TAGGGGTAATTTCGGTAATTTTG-TCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
187630739 TA-GGGTAATTTCG
1 TAGGGGTAATTTCG
187630752 TTCTACGTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
26 11 0.29
27 13 0.34
28 14 0.37
ACGTcount: A:0.19, C:0.09, G:0.27, T:0.45
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:187632397 original size:20 final size:20
Alignment explanation
Indices: 187632374--187632412 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
187632364 CCACATCCAA
*
187632374 ATACAAAATTTTAAAAATCT
1 ATACAAAATATTAAAAATCT
*
187632394 ATACAAAATATTGAAAATC
1 ATACAAAATATTAAAAATC
187632413 GCGAATAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.56, C:0.10, G:0.03, T:0.31
Consensus pattern (20 bp):
ATACAAAATATTAAAAATCT
Found at i:187637755 original size:23 final size:23
Alignment explanation
Indices: 187637729--187637776 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
187637719 CACGCTTATT
187637729 TGGAGGTAAAGCACACA-CCCGTG
1 TGGAGGTAAAGCACA-AGCCCGTG
*
187637752 TGGAGGTAAAGTACAAGCCCGTG
1 TGGAGGTAAAGCACAAGCCCGTG
187637775 TG
1 TG
187637777 CATGGGGACA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 1 0.04
23 22 0.96
ACGTcount: A:0.29, C:0.21, G:0.33, T:0.17
Consensus pattern (23 bp):
TGGAGGTAAAGCACAAGCCCGTG
Found at i:187644876 original size:38 final size:38
Alignment explanation
Indices: 187644828--187645067 Score: 354
Period size: 38 Copynumber: 6.3 Consensus size: 38
187644818 GGCACGAAGG
* * * *
187644828 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
187644866 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* ** *
187644904 CCCAGATATTTTACCAGCACGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTTAA
*
187644943 CCCCGGATATAATACCAGCATGAAGCCTGCGGGATTTAA
1 -CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
187644982 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
187645020 CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
187645058 CTCGGATATA
1 CCCGGATATA
187645068 CATCGAATAT
Statistics
Matches: 182, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
38 144 0.79
39 10 0.05
40 28 0.15
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:187645037 original size:116 final size:116
Alignment explanation
Indices: 187644828--187645048 Score: 363
Period size: 116 Copynumber: 1.9 Consensus size: 116
187644818 GGCACGAAGG
* *
187644828 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGGATATAATACCAGCACGAAGCCT
1 CCCGAATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
**
187644893 GCGGGATTTAACCCAGATATTTTACCAGCACGAAGCCTGCGGGTCTTTAAC
66 GCGGGATTTAACCCAGATATAATACCAGCACGAAGCCTGCGGGTCTTTAAC
* *
187644944 CCCGGATATAATACCAGCA-TGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCC
1 CCCGAATATAATACCAGCACT-AAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCC
*
187645008 TGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGC
65 TGCGGGATTTAACCCAGATATAATACCAGCACGAAGCCTGC
187645049 AGGATTTAAC
Statistics
Matches: 97, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
115 1 0.01
116 96 0.99
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (116 bp):
CCCGAATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
GCGGGATTTAACCCAGATATAATACCAGCACGAAGCCTGCGGGTCTTTAAC
Found at i:187652908 original size:23 final size:23
Alignment explanation
Indices: 187652881--187652930 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 23
187652871 TAGATACAAA
187652881 TTTTATTTTCAGTAATT-TTTTAT
1 TTTTA-TTTCAGTAATTATTTTAT
*
187652904 TTTTATTTCAGTTATTAATTTTAT
1 TTTTATTTCAGTAATT-ATTTTAT
187652928 TTT
1 TTT
187652931 AAATTCTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 10 0.42
23 5 0.21
24 9 0.38
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.70
Consensus pattern (23 bp):
TTTTATTTCAGTAATTATTTTAT
Found at i:187655618 original size:28 final size:28
Alignment explanation
Indices: 187655553--187655653 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
187655543 ATAGTGAATC
*
187655553 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
187655582 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
187655610 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
187655640 CGCACACTTAGTGC
1 CGCACACTTAGTGC
187655654 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:187660660 original size:40 final size:39
Alignment explanation
Indices: 187660495--187660678 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
187660485 AAATTGAATG
* * *
187660495 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
187660535 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
187660575 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
187660615 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
187660654 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
187660679 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:187660703 original size:80 final size:81
Alignment explanation
Indices: 187660535--187660723 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
187660525 GCTGGAAATT
* * * *
187660535 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
187660600 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
187660616 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
187660679 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
187660695 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
187660724 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:187668770 original size:40 final size:39
Alignment explanation
Indices: 187668605--187668788 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
187668595 AAATTGAATG
* * *
187668605 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
187668645 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
187668685 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
187668725 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
187668764 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
187668789 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:187668813 original size:80 final size:81
Alignment explanation
Indices: 187668645--187668833 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
187668635 GCTGGAAATT
* * * *
187668645 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
187668710 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
187668726 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
187668789 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
187668805 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
187668834 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:187674957 original size:27 final size:27
Alignment explanation
Indices: 187674799--187674956 Score: 181
Period size: 27 Copynumber: 5.8 Consensus size: 27
187674789 ACATACATCA
* * *
187674799 CATAGGGGCAAAACAGTCATCTTACCA
1 CATAAGGGCAAAACAGTCATTTTACCC
* * * * *
187674826 TAAAAGGGCAGAACAATCATTTTACCA
1 CATAAGGGCAAAACAGTCATTTTACCC
* *
187674853 TATAATGGCAAAACAGTCATTTTACCC
1 CATAAGGGCAAAACAGTCATTTTACCC
187674880 CATAAGGGCAAAACAGTCATTTTACCC
1 CATAAGGGCAAAACAGTCATTTTACCC
* *
187674907 TAAAAGGGCAAAACAGTCATTTTACCC
1 CATAAGGGCAAAACAGTCATTTTACCC
* *
187674934 CATAAGGGGAAAAATAGTCATTT
1 CATAA-GGGCAAAACAGTCATTT
187674957 ATCAATTCTA
Statistics
Matches: 111, Mismatches: 19, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
27 96 0.86
28 15 0.14
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (27 bp):
CATAAGGGCAAAACAGTCATTTTACCC
Found at i:187679390 original size:18 final size:16
Alignment explanation
Indices: 187679317--187679390 Score: 58
Period size: 17 Copynumber: 4.2 Consensus size: 16
187679307 AGCAAAAAAT
187679317 AAAAGAAATTGAGAGAAGA
1 AAAAGAAATT--GA-AAGA
* *
187679336 AACAAAAAAATGAAAGA
1 AA-AAGAAATTGAAAGA
187679353 AAAAGAAATTGAAAGCA
1 AAAAGAAATTGAAAG-A
**
187679370 AAAGAGAGCTTGAAAGA
1 AAA-AGAAATTGAAAGA
187679387 AAAA
1 AAAA
187679391 AGAATGGAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
16 12 0.26
17 14 0.30
18 12 0.26
19 2 0.04
20 6 0.13
ACGTcount: A:0.66, C:0.04, G:0.20, T:0.09
Consensus pattern (16 bp):
AAAAGAAATTGAAAGA
Found at i:187684079 original size:40 final size:40
Alignment explanation
Indices: 187684020--187684227 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
187684010 CAATTGAATG
* * * *
187684020 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
187684060 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
187684100 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
187684140 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
187684180 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
187684220 ATATCCGG
1 ATATCCGG
187684228 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:187684158 original size:80 final size:80
Alignment explanation
Indices: 187684021--187684227 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
187684011 AATTGAATGA
* * ** * * *
187684021 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
187684086 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
187684099 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
187684164 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
187684181 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
187684228 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:187692159 original size:40 final size:40
Alignment explanation
Indices: 187692035--187692240 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 40
187692025 CAATTGAATG
* * ** * **
187692035 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * *
187692075 ATATCCGGG-T-TGACCCGAAGGCAATT-GTGCTAG-TGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
*
187692113 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * * *
187692153 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * *
187692193 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
187692233 ATATCCGG
1 ATATCCGG
187692241 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
38 24 0.17
39 8 0.06
40 104 0.75
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
Found at i:187701616 original size:40 final size:40
Alignment explanation
Indices: 187701556--187701718 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
187701546 TGAATGATAC
* * *
187701556 CCGGGCTAAG-TCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
187701595 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
187701635 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
187701675 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
187701715 CCGG
1 CCGG
187701719 TTGAATCCCG
Statistics
Matches: 102, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
39 13 0.13
40 84 0.82
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:187709734 original size:40 final size:40
Alignment explanation
Indices: 187709674--187709836 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
187709664 TGAATGATAC
* * *
187709674 CCGGGCTAAG-TCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
187709713 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
187709753 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
187709793 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
187709833 CCGG
1 CCGG
187709837 TTGAATCCCG
Statistics
Matches: 102, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
39 13 0.13
40 84 0.82
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:187712231 original size:75 final size:74
Alignment explanation
Indices: 187712160--187712428 Score: 306
Period size: 75 Copynumber: 3.6 Consensus size: 74
187712150 GATTTATTCA
* * *
187712160 ACTAGTGCTCGGCACACCATTATATTTTTTGGTTCATCCGACTAGTGTTGGGCGCAACTTTTGTC
1 ACTAGTGCTGGGCACACCATTATATTTTTTGGTTTATCCGACTAGCGTTGGGCGCAACTTTT-TC
187712225 AGTTTATCTG
65 AGTTTATCTG
* * * *
187712235 AGTAGTGCTGGGCACACCATGATATTTTTCGGTTTATCTGACTAGCGTTGGGCGCAACTTTCTTC
1 ACTAGTGCTGGGCACACCATTATATTTTTTGGTTTATCCGACTAGCGTTGGGCGCAACTTT-TTC
*
187712300 AGTTTATTTG
65 AGTTTATCTG
* * * * * * * * * *
187712310 ACTAGTGATGAGCACACTATTGTAATTTTTAGTTTATCCGACTAGCGCTGGGTGCACCTTTCATC
1 ACTAGTGCTGGGCACACCATTATATTTTTTGGTTTATCCGACTAGCGTTGGGCGCAACTTT-TTC
187712375 AGTTTATCTG
65 AGTTTATCTG
* * * *
187712385 ACTAGTGCTGGGCACATCATTATATCTGTCGGTTTATCC-ACTAG
1 ACTAGTGCTGGGCACACCATTATATTTTTTGGTTTATCCGACTAG
187712429 TGCGAGGCAC
Statistics
Matches: 160, Mismatches: 33, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
74 5 0.03
75 154 0.96
76 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (74 bp):
ACTAGTGCTGGGCACACCATTATATTTTTTGGTTTATCCGACTAGCGTTGGGCGCAACTTTTTCA
GTTTATCTG
Found at i:187712241 original size:35 final size:34
Alignment explanation
Indices: 187712199--187712316 Score: 101
Period size: 35 Copynumber: 3.2 Consensus size: 34
187712189 TGGTTCATCC
187712199 GACTAGTGTTGGGCGCAACTTTTGTCAGTTTATCT
1 GACTAGTGTTGGGCGCAACTTTT-TCAGTTTATCT
* * * * *
187712234 GAGTAGTGCTGGGCACACCATGATATTTTTCGGTTTATCT
1 GACTAGTGTTGGG--C-GCA--A-CTTTTTCAGTTTATCT
* *
187712274 GACTAGCGTTGGGCGCAACTTTCTTCAGTTTATTT
1 GACTAGTGTTGGGCGCAACTTT-TTCAGTTTATCT
187712309 GACTAGTG
1 GACTAGTG
187712317 ATGAGCACAC
Statistics
Matches: 63, Mismatches: 13, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
34 3 0.05
35 29 0.46
37 3 0.05
38 3 0.05
40 21 0.33
41 4 0.06
ACGTcount: A:0.19, C:0.18, G:0.25, T:0.38
Consensus pattern (34 bp):
GACTAGTGTTGGGCGCAACTTTTTCAGTTTATCT
Found at i:187719620 original size:40 final size:40
Alignment explanation
Indices: 187719545--187719726 Score: 266
Period size: 40 Copynumber: 4.6 Consensus size: 40
187719535 AACCCAAGTA
*
187719545 CCTTCGGGAT-TTAG-CCGGATATAG-CAACTCA-CACAAATA
1 CCTTCGGG-TCTTAGCCCGGATATAGTC-ACT-AGCACAAATG
187719584 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
187719624 CCTTCGGGAT-TTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATG
*
187719664 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
*
187719704 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGTCTTAGCCCGGATAT
187719727 CATTCAAATA
Statistics
Matches: 135, Mismatches: 2, Indels: 11
0.91 0.01 0.07
Matches are distributed among these distances:
38 1 0.01
39 13 0.10
40 119 0.88
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:187719662 original size:80 final size:80
Alignment explanation
Indices: 187719545--187719726 Score: 298
Period size: 80 Copynumber: 2.3 Consensus size: 80
187719535 AACCCAAGTA
*
187719545 CCTTCGGGATTTAG-CCGGATATAGCAACTCACACAAATACCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGATTTAGCCCGGATATAGCAACTCACACAAATACCTTCGGGACTTAGCCCGGATATAG
187719609 TCACTAGCACAAATG
66 TCACTAGCACAAATG
*
187719624 CCTTCGGGATTTAGCCCGGATATAGTC-ACT-AGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGATTTAGCCCGGATATAG-CAACTCA-CACAAATACCTTCGGGACTTAGCCCGGATAT
187719687 AGTCACTAGCACAAATG
64 AGTCACTAGCACAAATG
*
187719704 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGATTTAGCCCGGATAT
187719727 CATTCAAATA
Statistics
Matches: 97, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
79 15 0.15
80 81 0.84
81 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGATTTAGCCCGGATATAGCAACTCACACAAATACCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:187721527 original size:40 final size:39
Alignment explanation
Indices: 187721482--187721591 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 39
187721472 CTGGAAATTA
* * *
187721482 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--ATAC
*
187721523 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTATAC
*
187721561 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
187721592 ACGTGATTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
38 2 0.03
39 29 0.48
40 30 0.49
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTATAC
Found at i:187721576 original size:39 final size:37
Alignment explanation
Indices: 187721482--187721591 Score: 130
Period size: 39 Copynumber: 2.8 Consensus size: 37
187721472 CTGGAAATTA
* *
187721482 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGGC
**
187721520 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTATTC
1 T--ATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGT-GGC
187721561 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCA-TTGTGC
187721592 ACGTGATTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
38 1 0.02
39 30 0.48
40 30 0.48
41 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (37 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGGC
Found at i:187729520 original size:40 final size:39
Alignment explanation
Indices: 187729475--187729584 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 39
187729465 CTGGAAATTA
* * *
187729475 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--ATAC
*
187729516 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTATAC
*
187729554 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
187729585 ACGTGATTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
38 2 0.03
39 29 0.48
40 30 0.49
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTATAC
Found at i:187729569 original size:39 final size:37
Alignment explanation
Indices: 187729475--187729584 Score: 130
Period size: 39 Copynumber: 2.8 Consensus size: 37
187729465 CTGGAAATTA
* *
187729475 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGGC
**
187729513 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTATTC
1 T--ATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGT-GGC
187729554 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCA-TTGTGC
187729585 ACGTGATTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
38 1 0.02
39 30 0.48
40 30 0.48
41 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (37 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGGC
Found at i:187740102 original size:3 final size:3
Alignment explanation
Indices: 187740094--187740144 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
187740084 TATTAATACC
187740094 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
187740142 TAA
1 TAA
187740145 ACATGGATAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:187740619 original size:21 final size:20
Alignment explanation
Indices: 187740580--187740636 Score: 80
Period size: 21 Copynumber: 2.9 Consensus size: 20
187740570 TTAGGGAAGG
*
187740580 GGAGAAAGAAAAAAAGGAGA
1 GGAGAAAGAGAAAAAGGAGA
*
187740600 GGAGAAGAGAGAAAAGGGAGA
1 GGAGAA-AGAGAAAAAGGAGA
187740621 GGAGAAAG-GAAAAAGG
1 GGAGAAAGAGAAAAAGG
187740637 GGGACTGCCG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
19 7 0.21
20 8 0.24
21 18 0.55
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (20 bp):
GGAGAAAGAGAAAAAGGAGA
Found at i:187749214 original size:44 final size:44
Alignment explanation
Indices: 187749153--187749617 Score: 626
Period size: 44 Copynumber: 10.6 Consensus size: 44
187749143 GAGACAATGT
* *
187749153 AGATCGAAGATAACAGATTTGGCGTCTCTGTATTGTCAAAGAGT
1 AGATCGAAGATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* * *
187749197 AGATCGAAGAGAACAGATTTGGCATCTCTGTATTGTCAGAGAGT
1 AGATCGAAGATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGC
*
187749241 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* *
187749285 AGATCGAAGATAACAGATTTGGCGTCTTTGTATTGACAGAGAGC
1 AGATCGAAGATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* *
187749329 AGATCGAAGATAATAGATTTGGCGTCTCTGTATTGAT-AGAGAGT
1 AGATCGAAGATAACAGATTTGGCGTCTCTGTATTG-TCAGAGAGC
* *
187749373 AGATCGAAGATGACAGATTTGGCGTCTCTGTATTGTCAAAGAGC
1 AGATCGAAGATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* * *
187749417 AGATCGAAGATAACAGATCTGGTGTCTCTGTATTATCAGAGAGC
1 AGATCGAAGATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* * * *
187749461 AGATCAAAGATAGCTGATTTGGCGTCTTTGTATTGTCAGAGAGC
1 AGATCGAAGATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* * * * * *
187749505 AGATCGAAAATAGCGGGTTTGACATCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* * * * *
187749549 AGATTGAAAATAGCAGATTTGCCGTTTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* *
187749593 AGATCGAGGATAATAGATTTGGCGT
1 AGATCGAAGATAACAGATTTGGCGT
187749618 TCTTGAGTTT
Statistics
Matches: 370, Mismatches: 49, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
43 1 0.00
44 369 1.00
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (44 bp):
AGATCGAAGATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGC
Found at i:187751281 original size:12 final size:12
Alignment explanation
Indices: 187751264--187751328 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
187751254 TTTTATTTAA
*
187751264 ATATTATTCATT
1 ATATTATACATT
**
187751276 ATATTAT-TTTT
1 ATATTATACATT
187751287 ATTATTATACATT
1 A-TATTATACATT
* *
187751300 TTATTTATAAATT
1 ATA-TTATACATT
*
187751313 TTATTATACATT
1 ATATTATACATT
187751325 ATAT
1 ATAT
187751329 ATTTTACTAC
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
11 3 0.07
12 26 0.62
13 13 0.31
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (12 bp):
ATATTATACATT
Found at i:187751307 original size:25 final size:24
Alignment explanation
Indices: 187751265--187751328 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 24
187751255 TTTATTTAAA
* **
187751265 TATTATTCATTATATTAT-TTTTAT
1 TATTATACATTATATTATAAATT-T
*
187751289 TATTATACATTTTATTTATAAATTT
1 TATTATACATTATA-TTATAAATTT
187751314 TATTATACATTATAT
1 TATTATACATTATAT
187751329 ATTTTACTAC
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
24 13 0.39
25 18 0.55
26 2 0.06
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (24 bp):
TATTATACATTATATTATAAATTT
Found at i:187753684 original size:18 final size:18
Alignment explanation
Indices: 187753658--187753701 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
187753648 CAATTTTGGG
187753658 CCCAAAACAAATAACCTA
1 CCCAAAACAAATAACCTA
*
187753676 CCTAAAACAAATAACCTA
1 CCCAAAACAAATAACCTA
187753694 CCCAAAAC
1 CCCAAAAC
187753702 CAATTAACCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.55, C:0.34, G:0.00, T:0.11
Consensus pattern (18 bp):
CCCAAAACAAATAACCTA
Found at i:187754825 original size:21 final size:22
Alignment explanation
Indices: 187754778--187754821 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
187754768 ACTATTCTTG
*
187754778 TATTATTATTTTTAACATATTT
1 TATTATTATTTTAAACATATTT
187754800 TATTATTA-TTTAAACAT-TTT
1 TATTATTATTTTAAACATATTT
187754820 TA
1 TA
187754822 ATTAATACTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (22 bp):
TATTATTATTTTAAACATATTT
Found at i:187755745 original size:16 final size:15
Alignment explanation
Indices: 187755724--187755771 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
187755714 GATGTGAATA
187755724 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
187755740 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
187755755 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
187755771 A
1 A
187755772 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:187755747 original size:24 final size:24
Alignment explanation
Indices: 187755720--187755775 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
187755710 TAATGATGTG
*
187755720 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
187755744 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
187755768 AATAATAA
1 AATAATAA
187755776 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:187755754 original size:8 final size:8
Alignment explanation
Indices: 187755720--187755771 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
187755710 TAATGATGTG
*
187755720 AATAATAA
1 AATATTAA
187755728 AATATATAA
1 AATAT-TAA
187755737 AATA-TAA
1 AATATTAA
187755744 AATATTAA
1 AATATTAA
*
187755752 AATATCAA
1 AATATTAA
*
187755760 AATATTAG
1 AATATTAA
187755768 AATA
1 AATA
187755772 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:187756047 original size:25 final size:25
Alignment explanation
Indices: 187755921--187756077 Score: 88
Period size: 25 Copynumber: 6.1 Consensus size: 25
187755911 TAAATACGTG
*
187755921 ATAATATTAAAAATATGTACATAAT
1 ATAATATTAAAAATATATACATAAT
** * *
187755946 ATTGTGTTAAAAATACATACATAAT
1 ATAATATTAAAAATATATACATAAT
* * *
187755971 AT-A-GTT-AAGATATATACATAAG
1 ATAATATTAAAAATATATACATAAT
* *
187755993 ATAACATGTAAAAAATATATATATAAATAAT
1 ATAATAT-T---AAA-A-ATATATACATAAT
* *
187756024 ATAATATTAAAGATATATACATAAA
1 ATAATATTAAAAATATATACATAAT
* *
187756049 ATAGTA-TAAAATATATATATATATAT
1 ATAATATTAAAA-ATATATACATA-AT
187756075 ATA
1 ATA
187756078 TACGTAATAT
Statistics
Matches: 100, Mismatches: 21, Indels: 21
0.70 0.15 0.15
Matches are distributed among these distances:
22 15 0.15
23 4 0.04
24 5 0.05
25 49 0.49
26 4 0.04
27 3 0.03
29 2 0.02
30 1 0.01
31 17 0.17
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (25 bp):
ATAATATTAAAAATATATACATAAT
Found at i:187756051 original size:27 final size:27
Alignment explanation
Indices: 187755977--187756067 Score: 71
Period size: 29 Copynumber: 3.4 Consensus size: 27
187755967 TAATATAGTT
* *
187755977 AAGATATATACATAAGATAACATGTAA
1 AAGATATATACATAAAATAACATATAA
* * *
187756004 AAAATATATATATAAATAATATA-ATATTA
1 AAGATATATACAT-AA-AATA-ACATATAA
*
187756033 AAGATATATACATAAAAT-A-GTATAA
1 AAGATATATACATAAAATAACATATAA
*
187756058 AATATATATA
1 AAGATATATA
187756068 TATATATATA
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
25 14 0.27
27 14 0.27
28 4 0.08
29 18 0.35
30 1 0.02
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.32
Consensus pattern (27 bp):
AAGATATATACATAAAATAACATATAA
Found at i:187756068 original size:27 final size:27
Alignment explanation
Indices: 187755962--187756137 Score: 101
Period size: 27 Copynumber: 6.4 Consensus size: 27
187755952 TTAAAAATAC
* *
187755962 ATACATAATATAGT-TAAGATATATAC
1 ATACATAATATAGTATAAAATATATAT
* * *
187755988 ATAAGATAACAT-GTAAAAAATATATAT
1 AT-ACATAATATAGTATAAAATATATAT
* * * *
187756015 ATAAATAATATAATAT-TAA-AGATAT
1 ATACATAATATAGTATAAAATATATAT
*
187756040 ATACATAAAATAGTATAAAATATATAT
1 ATACATAATATAGTATAAAATATATAT
* * *
187756067 ATATATATATATACGTAATATAGAATTTAAAAT
1 ATACATA-ATATA-GT-ATA-A-AATAT-ATAT
* *
187756100 ATACATAATATATTAAAAGAATATATAT
1 ATACATAATATAGTATAA-AATATATAT
*
187756128 A-ATATAATAT
1 ATACATAATAT
187756138 TAAGAAATAT
Statistics
Matches: 113, Mismatches: 26, Indels: 21
0.71 0.16 0.13
Matches are distributed among these distances:
25 18 0.16
26 15 0.13
27 39 0.35
28 8 0.07
29 8 0.07
30 5 0.04
31 2 0.02
32 9 0.08
33 9 0.08
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.35
Consensus pattern (27 bp):
ATACATAATATAGTATAAAATATATAT
Found at i:187756077 original size:37 final size:37
Alignment explanation
Indices: 187756036--187756112 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 37
187756026 AATATTAAAG
*
187756036 ATATATACATAAAATAG-TATAAAATATATATATATAT
1 ATATATACATAAAATAGATATAAAATATACATA-ATAT
* * *
187756073 ATATATACGTAATATAGAATTTAAAATATACATAATAT
1 ATATATACATAAAATAG-ATATAAAATATACATAATAT
187756111 AT
1 AT
187756113 TAAAAGAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
37 15 0.44
38 6 0.18
39 13 0.38
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.38
Consensus pattern (37 bp):
ATATATACATAAAATAGATATAAAATATACATAATAT
Found at i:187756678 original size:30 final size:30
Alignment explanation
Indices: 187756642--187756786 Score: 236
Period size: 30 Copynumber: 4.8 Consensus size: 30
187756632 TAGGTACAAG
* * *
187756642 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
187756672 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
187756702 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
* *
187756732 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
187756762 TGGTGGTGGAAAATGAGTGGCTAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGT
187756787 TGAGAAAAGT
Statistics
Matches: 108, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 108 1.00
ACGTcount: A:0.23, C:0.03, G:0.48, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:187757616 original size:15 final size:14
Alignment explanation
Indices: 187757587--187757649 Score: 65
Period size: 14 Copynumber: 4.5 Consensus size: 14
187757577 GAGTTGATTT
* *
187757587 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
187757601 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
* *
187757616 TTGAAAAGCAAAAA
1 TTGAAAAACAGAAA
*
187757630 TT-AAAAACAGAAT
1 TTGAAAAACAGAAA
187757643 TTGAAAA
1 TTGAAAA
187757650 GACCTCAGTG
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
13 10 0.25
14 18 0.45
15 12 0.30
ACGTcount: A:0.63, C:0.05, G:0.11, T:0.21
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:187757622 original size:13 final size:13
Alignment explanation
Indices: 187757606--187757649 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
187757596 ATAAATTGAA
187757606 AAAACAGAAATTG
1 AAAACAGAAATTG
* *
187757619 AAAAGCAAAAATTA
1 AAAA-CAGAAATTG
*
187757633 AAAACAGAATTTG
1 AAAACAGAAATTG
187757646 AAAA
1 AAAA
187757650 GACCTCAGTG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.66, C:0.07, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAACAGAAATTG
Found at i:187757761 original size:75 final size:77
Alignment explanation
Indices: 187757672--187757939 Score: 418
Period size: 77 Copynumber: 3.5 Consensus size: 77
187757662 TGGCCCGAGA
*
187757672 CTCAACTCACCTCTCGCAATATGAGTTGA-T-TTTTGAAAAGCAGAAATTGAAAA-CGCCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAG-CTCAGC
** **
187757734 GTGTGACCCGAGG
65 ACGTGACCAAAGG
*
187757747 CTCAACTCATCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTCAGCA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTCAGCA
*
187757812 CGTGAGCAAAGG
66 CGTGACCAAAGG
*
187757824 CTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTCAGCA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTCAGCA
*
187757889 CGTGAGCAAAGG
66 CGTGACCAAAGG
187757901 CTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGAAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAA
187757940 CTTAACTTGA
Statistics
Matches: 180, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
75 28 0.16
76 9 0.05
77 142 0.79
78 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (77 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTCAGCA
CGTGACCAAAGG
Found at i:187758065 original size:30 final size:30
Alignment explanation
Indices: 187758029--187758090 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
187758019 TTTTGAAAAA
187758029 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
187758059 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
187758089 CA
1 CA
187758091 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:187758173 original size:251 final size:244
Alignment explanation
Indices: 187757737--187758674 Score: 941
Period size: 251 Copynumber: 3.8 Consensus size: 244
187757727 CCTCAGCGTG
*
187757737 TGACCCGAGGCTCAACTCATC-TCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTG-AA
1 TGACCCGAGGCTCAACTCA-CATCTCGCAATATGAGTTGATT-TTTTGAAAAACAGAAATTGAAA
* * * *
187757800 AA-TAGCTCAGCACGTGAG--C-AAAGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTTG
64 AACTAACTCA-CTC-TGAGATCTAAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* *
187757861 AAAAGCAGAAATTGAAAATAGCTCAGCACGTGAGCAAAGGCTCAACTCACCTCTCGCAATATGAG
126 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
** * * *
187757926 TTGATTTTTTG-AAACTTAA-CTTGAAAAGCAGATTTTGAAAATACCTCGATATG
191 TTGATTTTTTGAAAACAGAATC-TGAAAAACAGATTTTGAAAATACCTCGACATA
* * *
187757979 TGA-CTGAAGGTTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATT-AAAA
1 TGACCCG-AGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAA
187758041 GACTCAACTCAACTCTCGCAGAAAT-TAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATT
65 -ACT-AACTC-ACTCT-G-AG--ATCT--AAAGCTCAACTCACCTCTCGCAATATGAGTTG-ATT
* * * *
187758105 TTTTTGAAGAAAAAAAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTTGCA
120 TTTTTGAA-AAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCA
*
187758170 ATATGAGTTGA-TTTCTGAAAACAGAATCTGAAAAACAGATTTTGAAAATACCTCGACATA
184 ATATGAGTTGATTTTTTGAAAACAGAATCTGAAAAACAGATTTTGAAAATACCTCGACATA
* *
187758230 TGACCCGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAA
1 TGACCCGAGGCTCAACTCACATCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAAA
* * * * * * *
187758295 AGTACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAG
65 ACTAACTCACTCTGAGATCTAAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
*
187758360 ACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
130 ACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * ** * * *
187758425 TTTTTTTTTTGAAAGGCAGAAAT-TGAAAAACGGAAATTGAAAATACCTCGGCGTG
195 ----TTTTTTGAAA-ACAG-AATCTGAAAAACAGATTTTGAAAATACCTCGACATA
* * * * * *
187758480 TGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTTG-ACAACAGAAATTG--A
1 TGACCCGAGGCTCAACTCACATCTCGCAATATGAGTTGA--TTTTTTGAAAAACAGAAATTGAAA
* * * * * *
187758542 AATTACCTCA--GTGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
64 AACTAACTCACTCTGAGAT-CTAAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* * * ** ** *
187758604 AAATAGAAATTGAAAATACCTCAGCA--TG-TCTTGAGGCTCAACTCATTTCTCACAATATGAGT
128 AAACAGAAATTGAAAATAGCTCAGCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGT
187758666 TGATTTTTT
192 TGATTTTTT
187758675 TTTTTGAAAA
Statistics
Matches: 597, Mismatches: 64, Indels: 72
0.81 0.09 0.10
Matches are distributed among these distances:
240 26 0.04
241 5 0.01
242 34 0.06
243 8 0.01
244 95 0.16
245 12 0.02
246 102 0.17
247 2 0.00
248 11 0.02
249 37 0.06
250 92 0.15
251 143 0.24
252 7 0.01
253 19 0.03
254 4 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (244 bp):
TGACCCGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAAA
CTAACTCACTCTGAGATCTAAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA
CAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTGAAAACAGAATCTGAAAAACAGATTTTGAAAATACCTCGACATA
Found at i:187758411 original size:77 final size:79
Alignment explanation
Indices: 187758237--187758707 Score: 331
Period size: 79 Copynumber: 5.9 Consensus size: 79
187758227 ATATGACCCG
* * * *
187758237 AGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAGTACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG-AAAAGTACCT
* * * *
187758302 CAGTGTGTGATCTGA
65 CAGCGCGTGAGCTCA
*
187758317 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAA-TAGCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAAGTACCTC
187758380 AGCGCGTGAGC-CA
66 AGCGCGTGAGCTCA
*
187758393 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGGCAGAAATTGAAAAACGG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAGACAGAAATTG-AAAA--G
** ** * *
187758458 AAATTGAAAATACCTCGGCGTGTGAC-CTG
60 ----T--ACCT-CAGC-GCGTGAG-CTC-A
* * * * *
187758487 AGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTTGACA-ACAGAAATTG-AAATTACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAGAAATTGAAAAGTACCT
* ** *
187758550 CA--GTGTGTCCT-G
65 CAGCGCGTGAGCTCA
* *
187758562 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTGAAAA-TACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAAGTACCTC
* * **
187758626 A--GCATG-TCTTG
66 AGCGCGTGAGCTCA
** * *
187758637 AGGCTCAACTCATTTCTCACAATATGAGTTGATTTTTTTTTTTGAAAAACAGAAATTGAAAA-TA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTTTGAAAGACAGAAATTGAAAAGTA
187758701 CCTCAGC
62 CCTCAGC
187758708 ATGTCTTGAG
Statistics
Matches: 324, Mismatches: 39, Indels: 55
0.78 0.09 0.13
Matches are distributed among these distances:
74 12 0.04
75 79 0.24
76 6 0.02
77 48 0.15
78 4 0.01
79 80 0.25
80 23 0.07
81 6 0.02
83 1 0.00
88 1 0.00
89 3 0.01
90 2 0.01
91 11 0.03
92 17 0.05
93 2 0.01
94 29 0.09
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.31
Consensus pattern (79 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAAGTACCTC
AGCGCGTGAGCTCA
Found at i:187758516 original size:94 final size:94
Alignment explanation
Indices: 187758353--187758526 Score: 251
Period size: 94 Copynumber: 1.9 Consensus size: 94
187758343 GTTGATTTTT
* * * *
187758353 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCACAATAC
187758418 GAGTTGATTTTTTTTTTGAAAGGCAGAAA
66 GAGTTGATTTTTTTTTTGAAAGGCAGAAA
* * * * *
187758447 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCTCTCACAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCACAATA
187758511 CGAGTTGATTTTTTTT
65 CGAGTTGATTTTTTTT
187758527 GACAACAGAA
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
93 2 0.03
94 68 0.97
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (94 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCACAATAC
GAGTTGATTTTTTTTTTGAAAGGCAGAAA
Found at i:187758690 original size:495 final size:487
Alignment explanation
Indices: 187757737--187758671 Score: 1121
Period size: 495 Copynumber: 1.9 Consensus size: 487
187757727 CCTCAGCGTG
*
187757737 TGACCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAA
1 TGACCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTCTTTTGAAAAACAGAAATTGAAAA
*
187757802 TAGCTCAGCACGTGAGCAAAGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGC
66 TACCTCAGCACGTGAGCAAAGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGC
187757867 AGAAATTGAAAATAGCTCAGCACGTGAGCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
131 AGAAATTGAAAATAGCTCAGCACGTGAGCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
** * * ** * *
187757932 TTTTGAAACTTAACTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGACTGAAGGTTCAACTC
196 TTTTGAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCGACATGTGACTGAAGGCTCAACTC
* *
187757997 ACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGACTCAACTCAACTCTCGCAG
261 ACCTCTCACAATACGAGTTGATTTTTGAAAAACAGAAATTAAAAGACTCAACTCAACTCTCGC--
*
187758062 AAATTAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAGAAAAAAAAATTGA
324 --ACT-AAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAGAAAAAAAAATTGA
* **
187758127 AAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTTGCAATATGAGTTGATTTCTGAAAAC
386 AAATACCTCAGCAC-TGAGCCAAGGCTCAACTCACTTCTCACAATATGAGTTGATTTCTGAAAAC
187758192 AG-AATCTGAAAAACAGATTTTGAAAATACCTCGACATA
450 AGAAAT-TGAAAAACAGATTTTGAAAATACCTCGACATA
* * *
187758230 TGACCCGAGGCTCAACTCA-CATCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAA
1 TGACCCGAGGCTCAACTCATC-TCTCGCAATATGAGTTGATTCTTTTGAAAAACAGAAATTG-AA
*** * * * *
187758294 AAGTACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-A
64 AA-TACCTCAGCACGTGAGC-AAAGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAA
* *
187758357 AAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
127 AAG-CAGAAATTGAAAATAGCTCAGCACGTGAGCAAAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
187758422 TGATTTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTG
191 TGA----TTTTTTGAAA--CAGAAATTGAAAAACAGAAATTGAAAATACCTCGACATGTGA-CTG
* * * *
187758487 -AGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTTG-ACAACAGAAATT-GAA-A-TTA
249 AAGGCTCAACTCACCTCTCACAATACGAGTTGA---TTTTTGAAAAACAGAAATTAAAAGACTCA
* * * * *
187758547 CCTC-AGTGT-GTC-CT-GAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTGAA-AA
311 ACTCAACTCTCG-CACTAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAGAA
* * * ** *
187758606 ATAGAAATTGAAAATACCTCAGCA-TG-TCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGA
375 AAAAAAATTGAAAATACCTCAGCACTGAGC-CAAGGCTCAACTCACTTCTCACAATATGAGTTGA
187758669 TTT
439 TTT
187758672 TTTTTTTTGA
Statistics
Matches: 379, Mismatches: 46, Indels: 39
0.82 0.10 0.08
Matches are distributed among these distances:
487 1 0.00
488 34 0.09
490 23 0.06
491 11 0.03
492 31 0.08
493 55 0.15
494 9 0.02
495 110 0.29
496 2 0.01
498 1 0.00
499 14 0.04
500 5 0.01
501 61 0.16
502 5 0.01
503 11 0.03
504 6 0.02
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (487 bp):
TGACCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTCTTTTGAAAAACAGAAATTGAAAA
TACCTCAGCACGTGAGCAAAGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGC
AGAAATTGAAAATAGCTCAGCACGTGAGCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTTGAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCGACATGTGACTGAAGGCTCAACTC
ACCTCTCACAATACGAGTTGATTTTTGAAAAACAGAAATTAAAAGACTCAACTCAACTCTCGCAC
TAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAGAAAAAAAAATTGAAAATA
CCTCAGCACTGAGCCAAGGCTCAACTCACTTCTCACAATATGAGTTGATTTCTGAAAACAGAAAT
TGAAAAACAGATTTTGAAAATACCTCGACATA
Found at i:187758707 original size:79 final size:76
Alignment explanation
Indices: 187758447--187758751 Score: 371
Period size: 75 Copynumber: 4.0 Consensus size: 76
187758437 AAGGCAGAAA
* * * * *
187758447 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGT--CCTGAGGCTCAACTCACCTCTCACAATAT
187758512 GAGTTGATTTTTT
64 GAGTTGATTTTTT
* * ** *
187758525 TTG-ACAACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGA
187758589 GTTGA-TTTTT
66 GTTGATTTTTT
* * **
187758599 TTGAAAAATAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGA
187758664 GTTGATTTTTTTTT
66 GTTGA---TTTTTT
* * ** *
187758678 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGA
*
187758743 GCTGATTTT
66 GTTGATTTT
187758752 GAAAAAGTAG
Statistics
Matches: 201, Mismatches: 21, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
74 8 0.04
75 90 0.45
76 4 0.02
77 25 0.12
78 3 0.01
79 71 0.35
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.32
Consensus pattern (76 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGA
GTTGATTTTTT
Found at i:187758725 original size:154 final size:148
Alignment explanation
Indices: 187758447--187758770 Score: 391
Period size: 154 Copynumber: 2.1 Consensus size: 148
187758437 AAGGCAGAAA
** * * *
187758447 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAATAGAAATTGAAAATACCTCAGCATGT-ACCTGAGGCTCAACTCACCTCTCACAATAC
* * ** *
187758512 GAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCT
65 GAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCT
*
187758577 CTCGCAATATGAGTTGATTTTT
130 CTCGCAATATGAGCTGA---TT
* ** *
187758599 TTGAAAAATAGAAATTGAAAATACCTCAGCATGT-CTTGAGGCTCAACTCATTTCTCACAATATG
1 TTGAAAAATAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCACAATACG
*
187758663 AGTTGATTTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAA
66 AGTTGA---TTTTTTTTG-AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAA
**
187758728 TTTCTCGCAATATGAGCTGATT
127 CCTCTCGCAATATGAGCTGATT
187758750 TTGAAAAAGTAGAAATT-AAAA
1 TTGAAAAA-TAGAAATTGAAAA
187758771 GGTTCAACCC
Statistics
Matches: 149, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
150 31 0.21
151 14 0.09
152 38 0.26
153 9 0.06
154 57 0.38
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (148 bp):
TTGAAAAATAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCACAATACG
AGTTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCTC
TCGCAATATGAGCTGATT
Found at i:187758832 original size:13 final size:13
Alignment explanation
Indices: 187758805--187758838 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
187758795 GAGTTGATTC
*
187758805 TTGAACAACATAAA
1 TTGAA-AACAGAAA
187758819 TTGAAAACAGAAA
1 TTGAAAACAGAAA
187758832 TTGAAAA
1 TTGAAAA
187758839 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:187758886 original size:140 final size:140
Alignment explanation
Indices: 187758682--187759303 Score: 1118
Period size: 140 Copynumber: 4.4 Consensus size: 140
187758672 TTTTTTTTGA
* * * * **
187758682 AAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGCTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
187758747 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACA
66 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACA
*
187758812 ACATAAATTG
131 ACGTAAATTG
*
187758822 AAAACAGAAATTGAAAATACCTCAGCGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
* * *
187758887 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTTTCGTAATATGAGTTGATTCTTGAACA
66 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACA
187758952 ACGTAAATTG
131 ACGTAAATTG
*
187758962 AAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
187759027 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACA
66 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACA
187759092 ACGTAAATTG
131 ACGTAAATTG
*
187759102 AAAACAGAAATTGAAAATACCTCAGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
187759167 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACA
66 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACA
187759232 ACGTAAATTG
131 ACGTAAATTG
*
187759242 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGACTCAACTCACCTCTCGCAATATGAG
1 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
187759304 TTGAAATTAA
Statistics
Matches: 464, Mismatches: 18, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
140 464 1.00
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.26
Consensus pattern (140 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACA
ACGTAAATTG
Found at i:187759100 original size:54 final size:54
Alignment explanation
Indices: 187759000--187759105 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
187758990 GACCTGAGGC
*
187759000 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
187759054 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
187759106 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:187759240 original size:54 final size:54
Alignment explanation
Indices: 187759140--187759245 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
187759130 GACCTGAGGC
*
187759140 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
187759194 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
187759246 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Done.