Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 6 of 770
Found at i:1592725 original size:3 final size:3
Alignment explanation
Indices: 1592719--1592751 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
1592709 GTACTACTCT
1592719 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1592752 CAGTCTGGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:1606359 original size:39 final size:40
Alignment explanation
Indices: 1606305--1606459 Score: 206
Period size: 39 Copynumber: 3.9 Consensus size: 40
1606295 TGTGTATGAA
* *
1606305 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
*
1606344 TGTGCGAGTTATGATATCCGGGATAAG-CCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
* * *
1606383 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
* * * *
1606423 TGTGCGGGTTATCATAACCGGGCTACGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGC
1606460 GTTTGAACGA
Statistics
Matches: 103, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 61 0.59
40 42 0.41
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (40 bp):
TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
Found at i:1606444 original size:79 final size:79
Alignment explanation
Indices: 1606305--1606459 Score: 222
Period size: 79 Copynumber: 2.0 Consensus size: 79
1606295 TGTGTATGAA
* *
1606305 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCGGGATAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATCATAACCGGGATAA
1606370 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * * *
1606383 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTATCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTATCATAACCGGGATA
*
1606448 CGTCCCGAAGGC
65 AGTCCCGAAGGC
1606460 GTTTGAACGA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
78 25 0.37
79 33 0.49
80 9 0.13
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATCATAACCGGGATAA
GTCCCGAAGGCAAT
Found at i:1606486 original size:79 final size:78
Alignment explanation
Indices: 1606315--1606497 Score: 206
Period size: 79 Copynumber: 2.3 Consensus size: 78
1606305 TGTGCGAATT
* * *
1606315 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCGGGATAAGCCCGAAGGC
1 GTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGTTATCATAACCGGGATAAGCCCGAAGGC
** *
1606380 AATTGTGCGAGTT
66 AATTGAACGAGTA
* * * *
1606393 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTATCATAACCGGGCTACGTCCCGAAG
1 GTGATATCCGGGTTAAG-CCCGAAGGCAATTGTGCGAGTTATCATAACCGGGATAAG-CCCGAAG
**
1606458 GCGTTTGAACGAGTA
64 GCAATTGAACGAGTA
* *
1606473 GTTATATCC-GGTTAAACTCCGAAGG
1 GTGATATCCGGGTTAAGC-CCGAAGG
1606498 TATGTGATTT
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 17 0.19
79 46 0.52
80 25 0.28
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.25
Consensus pattern (78 bp):
GTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGTTATCATAACCGGGATAAGCCCGAAGGC
AATTGAACGAGTA
Found at i:1614219 original size:39 final size:40
Alignment explanation
Indices: 1614165--1614319 Score: 215
Period size: 39 Copynumber: 3.9 Consensus size: 40
1614155 TGTGTATGAA
* *
1614165 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
1614204 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
* * *
1614243 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
* * * *
1614283 TGTGCGGGTTATCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGC
1614320 GTTTGAACGA
Statistics
Matches: 104, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 62 0.60
40 42 0.40
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (40 bp):
TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
Found at i:1614304 original size:79 final size:79
Alignment explanation
Indices: 1614165--1614319 Score: 231
Period size: 79 Copynumber: 2.0 Consensus size: 79
1614155 TGTGTATGAA
* *
1614165 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATCATAACCGGGCTAA
1614230 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * *
1614243 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTATCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTATCATAACCGGGCTA
*
1614308 TGTCCCGAAGGC
65 AGTCCCGAAGGC
1614320 GTTTGAACGA
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
78 25 0.37
79 34 0.50
80 9 0.13
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:1614339 original size:79 final size:78
Alignment explanation
Indices: 1614175--1614356 Score: 215
Period size: 79 Copynumber: 2.3 Consensus size: 78
1614165 TGTGCGAATT
* * *
1614175 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGC
1 GTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGTTATCATAACCGGGCTAAGCCCGAAGGC
** *
1614240 AATTGTGCGAGTT
66 AATTGAACGAGTA
* * *
1614253 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTATCATAACCGGGCTATGTCCCGAAG
1 GTGATATCCGGGTTAAG-CCCGAAGGCAATTGTGCGAGTTATCATAACCGGGCTAAG-CCCGAAG
**
1614318 GCGTTTGAACGAGTA
64 GCAATTGAACGAGTA
*
1614333 GT-ATATCC-GGTTAAACTCCGAAGG
1 GTGATATCCGGGTTAAGC-CCGAAGG
1614357 TATGTGATTT
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
77 1 0.01
78 29 0.33
79 40 0.45
80 19 0.21
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (78 bp):
GTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGTTATCATAACCGGGCTAAGCCCGAAGGC
AATTGAACGAGTA
Found at i:1618254 original size:23 final size:23
Alignment explanation
Indices: 1618227--1618293 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 23
1618217 CTGAACATTT
1618227 TTCTCTTCTATGACAACATCAAA
1 TTCTCTTCTATGACAACATCAAA
*
1618250 TTCTCACTCTA--AC-AC-T----
1 TTCTC-TTCTATGACAACATCAAA
1618266 TTCTCTTCTATGACAACATCAAA
1 TTCTCTTCTATGACAACATCAAA
1618289 TTCTC
1 TTCTC
1618294 ACTCTAACAC
Statistics
Matches: 33, Mismatches: 2, Indels: 18
0.62 0.04 0.34
Matches are distributed among these distances:
15 4 0.12
16 5 0.15
17 2 0.06
18 2 0.06
19 1 0.03
20 1 0.03
21 2 0.06
22 2 0.06
23 10 0.30
24 4 0.12
ACGTcount: A:0.30, C:0.30, G:0.03, T:0.37
Consensus pattern (23 bp):
TTCTCTTCTATGACAACATCAAA
Found at i:1618280 original size:39 final size:39
Alignment explanation
Indices: 1618226--1618303 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
1618216 GCTGAACATT
1618226 TTTCTCTTCTATGACAACATCAAATTCTCACTCTAACAC
1 TTTCTCTTCTATGACAACATCAAATTCTCACTCTAACAC
1618265 TTTCTCTTCTATGACAACATCAAATTCTCACTCTAACAC
1 TTTCTCTTCTATGACAACATCAAATTCTCACTCTAACAC
1618304 ATAGTTATGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.31, C:0.31, G:0.03, T:0.36
Consensus pattern (39 bp):
TTTCTCTTCTATGACAACATCAAATTCTCACTCTAACAC
Found at i:1620268 original size:40 final size:40
Alignment explanation
Indices: 1620202--1620388 Score: 308
Period size: 40 Copynumber: 4.7 Consensus size: 40
1620192 GCTACTTGCT
1620202 CAAATGCCTTC-GGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1620241 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
1620281 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
1620321 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
1620360 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1620389 CATCCGAATA
Statistics
Matches: 139, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
38 1 0.01
39 45 0.32
40 92 0.66
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:1620344 original size:79 final size:80
Alignment explanation
Indices: 1620202--1620384 Score: 300
Period size: 79 Copynumber: 2.3 Consensus size: 80
1620192 GCTACTTGCT
*
1620202 CAAATGCCTTC-GGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* *
1620266 -TTATAGTAACTCGCA
66 AAT-TAGTAACTAGCA
1620281 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
1620345 AATTAGTCACTAGCA
66 AATTAGTAACTAGCA
1620360 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
1620385 TTATCATCCG
Statistics
Matches: 98, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
79 56 0.57
80 42 0.43
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTAGCA
Found at i:1622919 original size:25 final size:25
Alignment explanation
Indices: 1622881--1622964 Score: 75
Period size: 25 Copynumber: 3.4 Consensus size: 25
1622871 TTCATATTCG
1622881 GGAATGCTCATTCGAGCACATA-AACA
1 GGAA-GCTCATTCGAGC-CATATAACA
* *
1622907 GGAAGCTCTTTCGAGCCATATAACG
1 GGAAGCTCATTCGAGCCATATAACA
** *
1622932 GGAAGCTCCA-GGGAGCCAT-TAACG
1 GGAAGCT-CATTCGAGCCATATAACA
1622956 GGAAGCTCA
1 GGAAGCTCA
1622965 CACAAGCATA
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
23 2 0.04
24 16 0.31
25 28 0.55
26 5 0.10
ACGTcount: A:0.32, C:0.24, G:0.26, T:0.18
Consensus pattern (25 bp):
GGAAGCTCATTCGAGCCATATAACA
Found at i:1623047 original size:26 final size:25
Alignment explanation
Indices: 1623016--1623067 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 25
1623006 GAAGCTCCGG
1623016 AGAGCCATTAATC-GGAAAGCTCACAA
1 AGAGCC-TTAATCAGGAAA-CTCACAA
*
1623042 AGAGCCTTTATCAGGAAACTCACAA
1 AGAGCCTTAATCAGGAAACTCACAA
1623067 A
1 A
1623068 ATGCCATGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.42, C:0.23, G:0.17, T:0.17
Consensus pattern (25 bp):
AGAGCCTTAATCAGGAAACTCACAA
Found at i:1624268 original size:20 final size:20
Alignment explanation
Indices: 1624243--1624283 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
1624233 ATACCGTCGT
1624243 AACATAGACACATGAAATAC
1 AACATAGACACATGAAATAC
1624263 AACATAGACACATGAAATAC
1 AACATAGACACATGAAATAC
1624283 A
1 A
1624284 TTGTGAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.20, G:0.10, T:0.15
Consensus pattern (20 bp):
AACATAGACACATGAAATAC
Found at i:1634408 original size:47 final size:47
Alignment explanation
Indices: 1634162--1634519 Score: 209
Period size: 47 Copynumber: 7.6 Consensus size: 47
1634152 TTAAGTTGCT
* * *
1634162 GATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TC-TTCATCGAGGCC
1 GATG-CATGTCCCAGACATGGTCTTACACTAGC-ACTCATT--TCTATGCC
* * * * * *
1634211 GATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGTGCT
1 GATG-CATGTCCCAGACATGGTCTTACACTAGCACTCATTTCT-A-TGCC
** **
1634261 GATGCATGTCCCAGACAT-GTCTTACACTAGCACGAAGCT-TA-GCC
1 GATGCATGTCCCAGACATGGTCTTACACTAGCACTCATTTCTATGCC
* ** * * *
1634305 GATGCATGTCCTAGACA-CATCTTACACTGGCTAC-CATCATT-GAGGCC
1 GATGCATGTCCCAGACATGGTCTTACACTAGC-ACTCAT--TTCTATGCC
* * * *
1634352 GATGTATGTCCCAGACAT-GTCTTACATTGGCACTCATTTCTATGCT
1 GATGCATGTCCCAGACATGGTCTTACACTAGCACTCATTTCTATGCC
* * ** *
1634398 GATGCCATGTCCTAGACATGGTCTTACACTAGCTA-TC-GTAATATAGCA
1 GATG-CATGTCCCAGACATGGTCTTACACTAGC-ACTCATTTCTAT-GCC
* * * * *
1634446 GATGCATGTCCTAGACAT-GTCTTACACTAGCCCTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGGTCTTACACTAGCACTCATTTCTATGCC
1634492 GATGCCATGTCCCAGACATGGTCTTACA
1 GATG-CATGTCCCAGACATGGTCTTACA
1634520 GTGGCTCTCA
Statistics
Matches: 243, Mismatches: 46, Indels: 41
0.74 0.14 0.12
Matches are distributed among these distances:
44 30 0.12
45 4 0.02
46 33 0.14
47 78 0.32
48 43 0.18
49 48 0.20
50 7 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGGTCTTACACTAGCACTCATTTCTATGCC
Found at i:1634450 original size:141 final size:140
Alignment explanation
Indices: 1634183--1634519 Score: 373
Period size: 141 Copynumber: 2.4 Consensus size: 140
1634173 CCAGACATGG
* * * *
1634183 TCTTACACTGGCTATCTTCATCGAGGCCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTC
1 TCTTACACTGGCTACCATCATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTC
* *
1634248 GTGTATAAGTGCTGATGCATGTCCCAGACATGTCTTACACTAGCACGAAGCTTAGCCGATGCATG
66 ATGTATAAGTGCTGATGCATGTCCCAGACATGTCTTACACTAGCACGAA-CTTAGCAGATGCATG
1634313 TCCTAGACACA
130 TCCTAGACACA
* * * *
1634324 TCTTACACTGGCTACCATCATTGAGGCCGATG-TATGTCCCAGACAT-GTCTTACATTGGCACTC
1 TCTTACACTGGCTACCATCATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTC
* * *
1634387 ATTTCT-A-TGCTGATGCCATGTCCTAGACATGGTCTTACACTAGCTATCGTAA-TATAGCAGAT
66 ATGTATAAGTGCTGATG-CATGTCCCAGACAT-GTCTTACACTAGC-A-CG-AACT-TAGCAGAT
**
1634449 GCATGTCCTAGACATG
125 GCATGTCCTAGACACA
* * * * *
1634465 TCTTACACTAGC-CCTCGTC-TCAATGCCGATGCCATGTCCCAGACATGGTCTTACA
1 TCTTACACTGGCTAC-CATCATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACA
1634520 GTGGCTCTCA
Statistics
Matches: 165, Mismatches: 22, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
137 8 0.05
138 14 0.08
139 30 0.18
140 24 0.15
141 79 0.48
142 10 0.06
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (140 bp):
TCTTACACTGGCTACCATCATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTC
ATGTATAAGTGCTGATGCATGTCCCAGACATGTCTTACACTAGCACGAACTTAGCAGATGCATGT
CCTAGACACA
Found at i:1634462 original size:94 final size:95
Alignment explanation
Indices: 1634162--1634519 Score: 338
Period size: 94 Copynumber: 3.8 Consensus size: 95
1634152 TTAAGTTGCT
* * * *
1634162 GATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCTTCATCGAGGCCGATGCCATGTTCC-A
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGC-ACTCATC-TCTATGCCGATGCCATG-TCCTA
* * *
1634225 GACATGGTCTTACACTAGCTCTCGTGTATAAGTGCT
61 GACATGGTCTTACACTAGCTATCGTATATAAG-GCA
** *
1634261 GATGCATGTCCCAGACATGTCTTACACTAGCACGAAGCT-TA-GCCGATG-CATGTCCTAGACA-
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTATGCCGATGCCATGTCCTAGACAT
** * * * * *
1634322 CATCTTACACTGGCTACCATCAT-TGAGGCC
66 GGTCTTACACTAGCTATCGT-ATATAAGGCA
* * * * *
1634352 GATGTATGTCCCAGACATGTCTTACATTGGCACTCATTTCTATGCTGATGCCATGTCCTAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTATGCCGATGCCATGTCCTAGACAT
1634417 GGTCTTACACTAGCTATCGTA-ATATA-GCA
66 GGTCTTACACTAGCTATCGTATATA-AGGCA
* * * * *
1634446 GATGCATGTCCTAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGATGCCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTATGCCGATGCCATGTCCTAGACAT
1634511 GGTCTTACA
66 GGTCTTACA
1634520 GTGGCTCTCA
Statistics
Matches: 210, Mismatches: 40, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
91 34 0.16
92 22 0.10
93 16 0.08
94 88 0.42
95 17 0.08
96 2 0.01
97 13 0.06
98 14 0.07
99 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (95 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTATGCCGATGCCATGTCCTAGACAT
GGTCTTACACTAGCTATCGTATATAAGGCA
Found at i:1637417 original size:13 final size:13
Alignment explanation
Indices: 1637399--1637424 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1637389 TCGGCAGGGA
1637399 CACGCCCGTGTGC
1 CACGCCCGTGTGC
1637412 CACGCCCGTGTGC
1 CACGCCCGTGTGC
1637425 GATTACTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.46, G:0.31, T:0.15
Consensus pattern (13 bp):
CACGCCCGTGTGC
Found at i:1657870 original size:13 final size:13
Alignment explanation
Indices: 1657852--1657877 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1657842 GCTCGGTAGG
1657852 GACACGCCCGTGT
1 GACACGCCCGTGT
1657865 GACACGCCCGTGT
1 GACACGCCCGTGT
1657878 TCGATTATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:1659895 original size:12 final size:12
Alignment explanation
Indices: 1659878--1659902 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1659868 AAATCTAATA
1659878 AAAATAAAAAGT
1 AAAATAAAAAGT
1659890 AAAATAAAAAGT
1 AAAATAAAAAGT
1659902 A
1 A
1659903 GTTTTAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATAAAAAGT
Found at i:1659950 original size:38 final size:38
Alignment explanation
Indices: 1659873--1659983 Score: 151
Period size: 38 Copynumber: 3.0 Consensus size: 38
1659863 TTCTAAAATC
* *
1659873 TAATAAAAA-TAAAAA-GTAAAATAA-AAAGT-AGT-TT
1 TAATAAAAATTAAAAACATAAAATAATAAA-TAAATGTT
*
1659907 TAATAAAAATTAAAAACATAAGATAATAAATAAATGTT
1 TAATAAAAATTAAAAACATAAAATAATAAATAAATGTT
1659945 TAATAAAAATTAAAAACATAAAATAATAAATAAATGTT
1 TAATAAAAATTAAAAACATAAAATAATAAATAAATGTT
1659983 T
1 T
1659984 TTAAACTCTT
Statistics
Matches: 68, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
34 9 0.13
35 6 0.09
36 8 0.12
37 5 0.07
38 40 0.59
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (38 bp):
TAATAAAAATTAAAAACATAAAATAATAAATAAATGTT
Found at i:1661550 original size:41 final size:41
Alignment explanation
Indices: 1661504--1661587 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
1661494 ATTAAAAGTA
1661504 AGTAGAATAGAGGTGAAAAGAGTAAACAAATGCTAAGGGAG
1 AGTAGAATAGAGGTGAAAAGAGTAAACAAATGCTAAGGGAG
1661545 AGTAGAATAGAGGTGAAAAGAGTAAACAAATGCTAAGGGAG
1 AGTAGAATAGAGGTGAAAAGAGTAAACAAATGCTAAGGGAG
1661586 AG
1 AG
1661588 AAATCGGGCG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.49, C:0.05, G:0.32, T:0.14
Consensus pattern (41 bp):
AGTAGAATAGAGGTGAAAAGAGTAAACAAATGCTAAGGGAG
Found at i:1675459 original size:24 final size:24
Alignment explanation
Indices: 1675374--1675461 Score: 81
Period size: 25 Copynumber: 3.6 Consensus size: 24
1675364 ATTTGAGAAT
* * *
1675374 GCTCATTTGAGCACATAAACAGGAA
1 GCTCATATGAGC-CATTAACGGGAA
*
1675399 GCTC-TTTCGAGCCATATAACGGGAA
1 GCTCATAT-GAGCCAT-TAACGGGAA
*
1675424 GCTCCAGA-GAGCCATTAACGGGAA
1 GCT-CATATGAGCCATTAACGGGAA
1675448 GCTCATATGAGCCA
1 GCTCATATGAGCCA
1675462 ATATAGAGAA
Statistics
Matches: 53, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
23 3 0.06
24 24 0.45
25 25 0.47
26 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.19
Consensus pattern (24 bp):
GCTCATATGAGCCATTAACGGGAA
Found at i:1675569 original size:26 final size:26
Alignment explanation
Indices: 1675512--1675566 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
1675502 AGAGAGACAT
* * * *
1675512 TAATCGGGAAGCTCACAAGGAGTCTT
1 TAATCGGGAAACTCACAAAGAGCCTG
1675538 TAATCGGGAAACTCACAAAGAGCCATG
1 TAATCGGGAAACTCACAAAGAGCC-TG
1675565 TA
1 TA
1675567 TCGAGACGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (26 bp):
TAATCGGGAAACTCACAAAGAGCCTG
Found at i:1677357 original size:49 final size:48
Alignment explanation
Indices: 1677296--1677467 Score: 166
Period size: 49 Copynumber: 3.5 Consensus size: 48
1677286 GCACTTACAC
* * *
1677296 CAATCTAGTTAGCAATTAACATGACCAACTAGTGGCCCACCTTATTTA
1 CAATCTAGTTAGCAACTAACATGCCCTACTAGTGGCCCACCTTATTTA
* * * * * *
1677344 CAGATCT-GATTAGCAACTAACATGCCCTGCTAGTGGTCTATCATATTTTC
1 CA-ATCTAG-TTAGCAACTAACATGCCCTACTAGTGGCCCACCTTA-TTTA
* **
1677394 CAATCTAGTTAGCAACTAACATGCCCTACCAGTGGCCCACCTTATTCGC
1 CAATCTAGTTAGCAACTAACATGCCCTACTAGTGGCCCACCTTATT-TA
* * *
1677443 CTATCTGGTTAGAAACTAACATGCC
1 CAATCTAGTTAGCAACTAACATGCC
1677468 TTACAAATGG
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
48 5 0.05
49 89 0.89
50 6 0.06
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (48 bp):
CAATCTAGTTAGCAACTAACATGCCCTACTAGTGGCCCACCTTATTTA
Found at i:1677428 original size:98 final size:98
Alignment explanation
Indices: 1677295--1677525 Score: 266
Period size: 98 Copynumber: 2.4 Consensus size: 98
1677285 AGCACTTACA
* * * * * *
1677295 CCAATCTAGTTAGCAATTAACATGACCAACTAGTGGCCCACCTTATTTACAGATCTGATTAGCAA
1 CCAATCTAGTTAGCAACTAACATGCCCTACCAGTGGCCCACCTTATTCACAGATCTGATTAGAAA
* * * * ***
1677360 CTAACATGCCCTGCTAGTGGTCTATCATATTTT
66 CTAACATGCCCTACAAATGGTCTATCACATCCG
* ** *
1677393 CCAATCTAGTTAGCAACTAACATGCCCTACCAGTGGCCCACCTTATTCGCCTATCTGGTTAGAAA
1 CCAATCTAGTTAGCAACTAACATGCCCTACCAGTGGCCCACCTTATTCACAGATCTGATTAGAAA
* *
1677458 CTAACATGCCTTACAAATGGTCTATCGCATCCG
66 CTAACATGCCCTACAAATGGTCTATCACATCCG
*
1677491 CCAAGT-TGGTTAGCAACTAACATGCCCTACCAGTG
1 CCAA-TCTAGTTAGCAACTAACATGCCCTACCAGTG
1677526 ATCCATCTTA
Statistics
Matches: 112, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
98 111 0.99
99 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (98 bp):
CCAATCTAGTTAGCAACTAACATGCCCTACCAGTGGCCCACCTTATTCACAGATCTGATTAGAAA
CTAACATGCCCTACAAATGGTCTATCACATCCG
Found at i:1681742 original size:76 final size:76
Alignment explanation
Indices: 1681615--1681838 Score: 214
Period size: 76 Copynumber: 2.9 Consensus size: 76
1681605 AAGGAGTGAT
* * * ** * *
1681615 TGATATTGTCCGTTTATCCGACTAGTGCCGGGCGCAAATCTTCGTCAGTATATCCAACTAAAGCT
1 TGATATCGTCAGTTTATTCGACTAGCACTGGGCGCAAATCTTCGTTAGTATATCCAACTAAAGCT
*
1681680 AGGTACATATA
66 AGGCACATATA
** * * * * ** *
1681691 TGATATCGTTGGTTTATTCGACTAGCATTGGGCGTAAATCTTTGTTGGTATATCCAACTAGTGTT
1 TGATATCGTCAGTTTATTCGACTAGCACTGGGCGCAAATCTTCGTTAGTATATCCAACTAAAGCT
* *
1681756 GGGCACATATT
66 AGGCACATATA
** * * * **
1681767 TGATATCGTCAGTTTATTCGACTAGTGCTGGGCACAAATCTTCGTTTGTATATCCAATTAGTGCT
1 TGATATCGTCAGTTTATTCGACTAGCACTGGGCGCAAATCTTCGTTAGTATATCCAACTAAAGCT
1681832 AGGCACA
66 AGGCACA
1681839 AATCATTGTC
Statistics
Matches: 118, Mismatches: 30, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
76 118 1.00
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (76 bp):
TGATATCGTCAGTTTATTCGACTAGCACTGGGCGCAAATCTTCGTTAGTATATCCAACTAAAGCT
AGGCACATATA
Found at i:1681857 original size:36 final size:36
Alignment explanation
Indices: 1681787--1681874 Score: 97
Period size: 36 Copynumber: 2.4 Consensus size: 36
1681777 AGTTTATTCG
* **
1681787 ACTAGTGCTGGGCACAAATCTTCGTTTGTATATCCA
1 ACTAGTGCTAGGCACAAATCTTCGTCGGTATATCCA
* * *
1681823 ATTAGTGCTAGGCACAAATCATT-GTCGGTTTATCCG
1 ACTAGTGCTAGGCACAAATC-TTCGTCGGTATATCCA
*
1681859 GCTAGTGCTAGGCACA
1 ACTAGTGCTAGGCACA
1681875 CATTTGATAT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
36 41 0.95
37 2 0.05
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.31
Consensus pattern (36 bp):
ACTAGTGCTAGGCACAAATCTTCGTCGGTATATCCA
Found at i:1703067 original size:16 final size:16
Alignment explanation
Indices: 1703048--1703078 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1703038 CTTCTTCACT
1703048 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
1703064 TACTTACTTACTTAA
1 TACTCACTTACTTAA
1703079 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:1703084 original size:20 final size:20
Alignment explanation
Indices: 1703045--1703084 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
1703035 AAACTTCTTC
* *
1703045 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
1703065 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
1703085 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:1703463 original size:108 final size:109
Alignment explanation
Indices: 1703317--1703517 Score: 307
Period size: 108 Copynumber: 1.8 Consensus size: 109
1703307 ATCCTTTTGA
* *
1703317 AACTTATCATTGACATGTCTCGACATGGTCTTACATGGTATCATTGCCTTATG-AGCTCACCAA-
1 AACTTATCAATGACATGTCTCGACATGGTCTTACATGGTATCATTGCCTTA-GAACCTCACCAAT
1703380 TGCCATGCCTTGGCATGGTCTTACATGGGACATTTGCCTTATAGT
65 TGCCATGCCTTGGCATGGTCTTACATGGGACATTTGCCTTATAGT
* * * *
1703425 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTTACCAAT
1 AACTTATCAATGACATGTCTCGACATGGTCTTACATGGTATCATTGCCTTAG-AACCTCACCAAT
*
1703490 TGCCATGCCTTGGCATGTTCTTACATGG
65 TGCCATGCCTTGGCATGGTCTTACATGG
1703518 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.57
109 8 0.10
110 27 0.33
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.34
Consensus pattern (109 bp):
AACTTATCAATGACATGTCTCGACATGGTCTTACATGGTATCATTGCCTTAGAACCTCACCAATT
GCCATGCCTTGGCATGGTCTTACATGGGACATTTGCCTTATAGT
Found at i:1703518 original size:55 final size:54
Alignment explanation
Indices: 1703270--1703524 Score: 233
Period size: 55 Copynumber: 4.8 Consensus size: 54
1703260 ACATGAGTAC
* * *
1703270 CTTACC-ATTTCCATGACTTGTCATGGTCTTACATGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* * * * * *
1703319 CTTATC-ATTGACATGTCTCGACATGGTCTTACATGGTATCATTGCCTTATG-AG
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * * *
1703372 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGA-CATTTGCCTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATC-CTTGCC-T-TAGAAA
* *
1703427 CTTATCAA-TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
1703480 CCTTACCAATTGCCATGCCTTGGCATGTTCTTACATGGTATCCTT
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
1703525 AAACCCTAAT
Statistics
Matches: 165, Mismatches: 28, Indels: 20
0.77 0.13 0.09
Matches are distributed among these distances:
49 36 0.22
52 3 0.02
53 40 0.24
54 12 0.07
55 73 0.44
56 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:1704394 original size:21 final size:20
Alignment explanation
Indices: 1704359--1704399 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
1704349 TGAATATATA
1704359 TCTGTTTGTTAGAACATTCTG
1 TCTGTTTGTTAGAAC-TTCTG
1704380 TCTGTTTGTGT-GAACTTCTG
1 TCTGTTTGT-TAGAACTTCTG
1704400 GAAATTGACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.26
21 13 0.68
22 1 0.05
ACGTcount: A:0.15, C:0.15, G:0.22, T:0.49
Consensus pattern (20 bp):
TCTGTTTGTTAGAACTTCTG
Found at i:1706383 original size:50 final size:50
Alignment explanation
Indices: 1706321--1706442 Score: 226
Period size: 50 Copynumber: 2.4 Consensus size: 50
1706311 GCCAATGCCA
*
1706321 TGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTATTCTGATGTCG
1 TGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTAGTCTGATGTCG
*
1706371 TGTCCCAAACATGGTCTTACACAAGCTCTAGCATATCTAGTCTGATGTCG
1 TGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTAGTCTGATGTCG
1706421 TGTCCCAGACATGGTCTTACAC
1 TGTCCCAGACATGGTCTTACAC
1706443 TGACACATCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 69 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (50 bp):
TGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTAGTCTGATGTCG
Found at i:1706490 original size:44 final size:45
Alignment explanation
Indices: 1706421--1706533 Score: 158
Period size: 46 Copynumber: 2.5 Consensus size: 45
1706411 TCTGATGTCG
* *
1706421 TGTCCCAGACATGGTCTTACACTGAC-ACATCTTGTA-GCCGATGCA
1 TGTCTCAGACAT-GTCTTACACTGACTACATCTCG-AGGCCGATGCA
*
1706466 TGTCTCAGACATGTCTTACACTGACTTACGTCTCGAGGCCGATGCA
1 TGTCTCAGACATGTCTTACACTGAC-TACATCTCGAGGCCGATGCA
1706512 TGTCTCAGACATGTCTTACACT
1 TGTCTCAGACATGTCTTACACT
1706534 AGCACTCGTC
Statistics
Matches: 62, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
44 13 0.21
45 12 0.19
46 37 0.60
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (45 bp):
TGTCTCAGACATGTCTTACACTGACTACATCTCGAGGCCGATGCA
Found at i:1706544 original size:46 final size:45
Alignment explanation
Indices: 1706457--1706629 Score: 156
Period size: 46 Copynumber: 3.7 Consensus size: 45
1706447 ACATCTTGTA
1706457 GCCGATGCATGTCTCAGACATGTCTTACACT-G-ACTTACGTCTCGAG
1 GCCGATGCATGTCTCAGACATGTCTTACACTAGCAC-T-CGTCTC-AG
*
1706503 GCCGATGCATGTCTCAGACATGTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCTCAGACATGTCTTACACTAGCACTCGTCTC-AG
* * * * * *
1706549 GCCGATG-TTGTGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-ATG
1 GCCGATGCATGTCT-C-AGACAT-GTCTTACACTAGCACTCGT-CTCA-G
* *
1706597 GCCGATACATGTCCCAGACATGTCTTACACTAG
1 GCCGATGCATGTCTCAGACATGTCTTACACTAG
1706630 TTCACAATAA
Statistics
Matches: 105, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
45 4 0.04
46 57 0.54
47 15 0.14
48 25 0.24
49 4 0.04
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCTCAGACATGTCTTACACTAGCACTCGTCTCAG
Found at i:1709621 original size:25 final size:25
Alignment explanation
Indices: 1709593--1709644 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
1709583 TGGGCTATGA
*
1709593 ATTTTACTATTATAAATGATGCTAC
1 ATTTCACTATTATAAATGATGCTAC
1709618 ATTTCACTATTATAAATGATGCTAC
1 ATTTCACTATTATAAATGATGCTAC
1709643 AT
1 AT
1709645 ACTGCATAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.42
Consensus pattern (25 bp):
ATTTCACTATTATAAATGATGCTAC
Found at i:1727443 original size:22 final size:22
Alignment explanation
Indices: 1727396--1727450 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 22
1727386 TGTATTATTT
* * *
1727396 TTATATG-ATTTTTTTTATAATT
1 TTATATGTA-TTTTTATAAAATC
1727418 TTATATGTATTTTTATAAAATC
1 TTATATGTATTTTTATAAAATC
1727440 -T-TATGTATTTT
1 TTATATGTATTTT
1727451 AATTAAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 10 0.34
21 1 0.03
22 17 0.59
23 1 0.03
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.64
Consensus pattern (22 bp):
TTATATGTATTTTTATAAAATC
Found at i:1727852 original size:29 final size:29
Alignment explanation
Indices: 1727810--1727868 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
1727800 ATTATAAAAG
1727810 TATAAAAAATTGGTAAAACACAACTACCT
1 TATAAAAAATTGGTAAAACACAACTACCT
1727839 TATAAAAAATTGGTAAAACACAACTACCT
1 TATAAAAAATTGGTAAAACACAACTACCT
1727868 T
1 T
1727869 GAAGTTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.51, C:0.17, G:0.07, T:0.25
Consensus pattern (29 bp):
TATAAAAAATTGGTAAAACACAACTACCT
Found at i:1728283 original size:39 final size:38
Alignment explanation
Indices: 1728232--1728316 Score: 127
Period size: 39 Copynumber: 2.2 Consensus size: 38
1728222 AAATTATATT
*
1728232 TAATACAATAAAATATTTATTATATTTATTTG-TATTTTG
1 TAATATAATAAAATATTTATTATATTTA--TGATATTTTG
*
1728271 TAATATAATAAAATATTTATTATATTTATGATATTTTT
1 TAATATAATAAAATATTTATTATATTTATGATATTTTG
1728309 TAATATAA
1 TAATATAA
1728317 ATATTTTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
37 2 0.05
38 14 0.33
39 27 0.63
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (38 bp):
TAATATAATAAAATATTTATTATATTTATGATATTTTG
Found at i:1730839 original size:24 final size:23
Alignment explanation
Indices: 1730783--1730827 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
1730773 AACAAAAAGT
* *
1730783 ATTTATGAGTATAATATATTTAG
1 ATTTATTAGCATAATATATTTAG
1730806 CATTTATTAGCATAATATATTT
1 -ATTTATTAGCATAATATATTT
1730828 GAGTTTGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.49
Consensus pattern (23 bp):
ATTTATTAGCATAATATATTTAG
Found at i:1734160 original size:35 final size:35
Alignment explanation
Indices: 1734121--1734232 Score: 88
Period size: 35 Copynumber: 3.1 Consensus size: 35
1734111 TTGAGATGAA
1734121 AGATTTGGGACCAGCAAAGAAGATACTTGGTATGG
1 AGATTTGGGACCAGCAAAGAAGATACTTGGTATGG
* * * * *
1734156 AGATTCTCAGAGA-TAGAAAAGCAAG-TAAATT-GT-TGAA
1 AGATT-T--GGGACCAGCAAAG-AAGAT-ACTTGGTATG-G
*
1734193 AGATTTAGGACCAGCAAAGAAGATACTTGGTATGG
1 AGATTTGGGACCAGCAAAGAAGATACTTGGTATGG
1734228 AGATT
1 AGATT
1734233 CTTAGAGATA
Statistics
Matches: 56, Mismatches: 11, Indels: 20
0.64 0.13 0.23
Matches are distributed among these distances:
34 8 0.14
35 19 0.34
36 6 0.11
37 14 0.25
38 9 0.16
ACGTcount: A:0.39, C:0.10, G:0.27, T:0.24
Consensus pattern (35 bp):
AGATTTGGGACCAGCAAAGAAGATACTTGGTATGG
Found at i:1734204 original size:72 final size:72
Alignment explanation
Indices: 1734117--1734258 Score: 266
Period size: 72 Copynumber: 2.0 Consensus size: 72
1734107 GAATTTGAGA
*
1734117 TGAAAGATTTGGGACCAGCAAAGAAGATACTTGGTATGGAGATTCTCAGAGATAGAAAAGCAAGT
1 TGAAAGATTTAGGACCAGCAAAGAAGATACTTGGTATGGAGATTCTCAGAGATAGAAAAGCAAGT
1734182 AAATTGT
66 AAATTGT
*
1734189 TGAAAGATTTAGGACCAGCAAAGAAGATACTTGGTATGGAGATTCTTAGAGATAGAAAAGCAAGT
1 TGAAAGATTTAGGACCAGCAAAGAAGATACTTGGTATGGAGATTCTCAGAGATAGAAAAGCAAGT
1734254 AAATT
66 AAATT
1734259 ATACCTAAGT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.42, C:0.09, G:0.25, T:0.24
Consensus pattern (72 bp):
TGAAAGATTTAGGACCAGCAAAGAAGATACTTGGTATGGAGATTCTCAGAGATAGAAAAGCAAGT
AAATTGT
Found at i:1736250 original size:15 final size:17
Alignment explanation
Indices: 1736216--1736254 Score: 57
Period size: 15 Copynumber: 2.5 Consensus size: 17
1736206 TCCAATAAAA
1736216 TAAA-TAAATAATTAAT
1 TAAATTAAATAATTAAT
1736232 TAAATTAAA-AATT-AT
1 TAAATTAAATAATTAAT
1736247 TAAATTAA
1 TAAATTAA
1736255 TAGAATGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 10 0.45
16 8 0.36
17 4 0.18
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TAAATTAAATAATTAAT
Found at i:1736486 original size:23 final size:23
Alignment explanation
Indices: 1736433--1736489 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 23
1736423 TTAATTACTT
*
1736433 ATTTAGCTTTTTTTAAAAATTAA
1 ATTTAGATTTTTTTAAAAATTAA
* *
1736456 ATTT--ATTTTTTTTAGAATTAA
1 ATTTAGATTTTTTTAAAAATTAA
*
1736477 CTTTAGATTTTTT
1 ATTTAGATTTTTT
1736490 AGTAAAAGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 17 0.61
23 11 0.39
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.60
Consensus pattern (23 bp):
ATTTAGATTTTTTTAAAAATTAA
Found at i:1739622 original size:69 final size:70
Alignment explanation
Indices: 1739492--1739622 Score: 151
Period size: 69 Copynumber: 1.9 Consensus size: 70
1739482 GTTTTATTAG
* ** *
1739492 TTTTTTTACAATTTAGGCCCCTAAATTCTATTTAAATTTTGATTCAATCCTTTTTATATTTATTC
1 TTTTATTACAATTTAGGCCCCTAAATTCTATTTAAATTTCAATTCAATCCTTTTTACATTTATTC
1739557 ATTTA
66 ATTTA
* * * *
1739562 TTTTATTATAATTTAGG-CTCTAAATT-TCATTTTAATTTCAATTTAATCCTTTATT-CATTTA
1 TTTTATTACAATTTAGGCCCCTAAATTCT-ATTTAAATTTCAATTCAATCCTTT-TTACATTTA
1739623 ATTTCAACCT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
68 1 0.02
69 33 0.65
70 17 0.33
ACGTcount: A:0.28, C:0.13, G:0.04, T:0.55
Consensus pattern (70 bp):
TTTTATTACAATTTAGGCCCCTAAATTCTATTTAAATTTCAATTCAATCCTTTTTACATTTATTC
ATTTA
Found at i:1739678 original size:4 final size:4
Alignment explanation
Indices: 1739669--1739716 Score: 60
Period size: 4 Copynumber: 12.0 Consensus size: 4
1739659 TCTGTTCTGT
* * * *
1739669 TTTA TTTA TTTA TTTA TTTA TGTA TTCA TTCA TTTA TTTA TTTC TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1739717 ATGTTTTTGT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:1743541 original size:19 final size:20
Alignment explanation
Indices: 1743498--1743543 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
1743488 TTGCATTCAT
1743498 TTTTCATTCATCAGCATTACA
1 TTTTCA-TCATCAGCATTACA
1743519 -TTTCATCAT-ATGCATTA-A
1 TTTTCATCATCA-GCATTACA
1743537 TTTTCAT
1 TTTTCAT
1743544 AAAAAGGTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
18 2 0.09
19 16 0.70
20 5 0.22
ACGTcount: A:0.28, C:0.20, G:0.04, T:0.48
Consensus pattern (20 bp):
TTTTCATCATCAGCATTACA
Found at i:1746383 original size:21 final size:22
Alignment explanation
Indices: 1746350--1746390 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
1746340 TTCATTTATG
*
1746350 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
1746371 TTTCATTTCCACATACATCA
1 TTTCATTGCCACATACATCA
1746391 CAATACATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:1746792 original size:28 final size:28
Alignment explanation
Indices: 1746761--1746829 Score: 66
Period size: 28 Copynumber: 2.5 Consensus size: 28
1746751 GAATCATTCG
**
1746761 ATATTTCGCACACCAAGTGTTATTCTCA
1 ATATTTCGCACACCAAGTGCCATTCTCA
* * * *
1746789 ATATCTCACACGCTAAGTGCCATTCTCA
1 ATATTTCGCACACCAAGTGCCATTCTCA
* *
1746817 AAATTTCGTACAC
1 ATATTTCGCACAC
1746830 TGAGAGCCAT
Statistics
Matches: 30, Mismatches: 11, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.30, C:0.28, G:0.10, T:0.32
Consensus pattern (28 bp):
ATATTTCGCACACCAAGTGCCATTCTCA
Found at i:1752773 original size:7 final size:7
Alignment explanation
Indices: 1752761--1752789 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
1752751 TATAAAACCT
1752761 ACCCTAA
1 ACCCTAA
1752768 ACCCTAA
1 ACCCTAA
1752775 ACCCTAA
1 ACCCTAA
1752782 ACCCTAA
1 ACCCTAA
1752789 A
1 A
1752790 TGTTTGGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.41, G:0.00, T:0.14
Consensus pattern (7 bp):
ACCCTAA
Found at i:1754011 original size:35 final size:35
Alignment explanation
Indices: 1753967--1754299 Score: 326
Period size: 35 Copynumber: 9.5 Consensus size: 35
1753957 GGCAAAGTGC
*
1753967 GAAACGTAGGTATGGTATCATCCATACCGAGTTGT
1 GAAACGTAGGTATGGTATTATCCATACCGAGTTGT
* * **
1754002 GAAATGTAGGTATGGTATTAACCATATTGAGTTGT
1 GAAACGTAGGTATGGTATTATCCATACCGAGTTGT
*
1754037 GAAACGTAGGTATGGTATCATCCATACCGAGTTGT
1 GAAACGTAGGTATGGTATTATCCATACCGAGTTGT
* *
1754072 GAAACGTAGGTATGGTATTAACCATATCGAGTTGT
1 GAAACGTAGGTATGGTATTATCCATACCGAGTTGT
* * * ** *
1754107 GAAACATAGGTATGGTATTAACCATACTGAACTAT
1 GAAACGTAGGTATGGTATTATCCATACCGAGTTGT
** ** * * *
1754142 GAAACGTAGGTATGGCGTCGTCCATACTGAGCTAT
1 GAAACGTAGGTATGGTATTATCCATACCGAGTTGT
* * ** * *
1754177 GATACGTAGGTATGGCATCGTCCATACTGAGTTAT
1 GAAACGTAGGTATGGTATTATCCATACCGAGTTGT
** * * * **
1754212 GAAATATAGCTATGGTCTTTTCCATACCGAG-CAT
1 GAAACGTAGGTATGGTATTATCCATACCGAGTTGT
* * *
1754246 GAAAAGTAGGTATGGTGTTTTCCATACCGAGTTGT
1 GAAACGTAGGTATGGTATTATCCATACCGAGTTGT
1754281 GAAACGTAGGTATGGTATT
1 GAAACGTAGGTATGGTATT
1754300 TCAATGAGGA
Statistics
Matches: 250, Mismatches: 47, Indels: 2
0.84 0.16 0.01
Matches are distributed among these distances:
34 29 0.12
35 221 0.88
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (35 bp):
GAAACGTAGGTATGGTATTATCCATACCGAGTTGT
Found at i:1754145 original size:105 final size:104
Alignment explanation
Indices: 1753967--1754298 Score: 396
Period size: 105 Copynumber: 3.2 Consensus size: 104
1753957 GGCAAAGTGC
* *
1753967 GAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTAACCATATTGA
1 GAAACGTAGGTATGGTATCATCCATA-CGAGTTGTGAAATATAGGTATGGTATTAACCATACTGA
* * *
1754032 GTTGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGT
65 GCTATGAAACGTAGGTATGGTGTCATCCATACCGAGTTGT
* * *
1754072 GAAACGTAGGTATGGTATTAACCATATCGAGTTGTGAAACATAGGTATGGTATTAACCATACTGA
1 GAAACGTAGGTATGGTATCATCCATA-CGAGTTGTGAAATATAGGTATGGTATTAACCATACTGA
* * * * * *
1754137 ACTATGAAACGTAGGTATGGCGTCGTCCATACTGAGCTAT
65 GCTATGAAACGTAGGTATGGTGTCATCCATACCGAGTTGT
* * * * * * ** *
1754177 GATACGTAGGTATGGCATCGTCCATACTGAGTTATGAAATATAGCTATGGTCTTTTCCATACCGA
1 GAAACGTAGGTATGGTATCATCCATAC-GAGTTGTGAAATATAGGTATGGTATTAACCATACTGA
* **
1754242 GC-ATGAAAAGTAGGTATGGTGTTTTCCATACCGAGTTGT
65 GCTATGAAACGTAGGTATGGTGTCATCCATACCGAGTTGT
1754281 GAAACGTAGGTATGGTAT
1 GAAACGTAGGTATGGTAT
1754299 TTCAATGAGG
Statistics
Matches: 189, Mismatches: 37, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
104 47 0.25
105 142 0.75
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (104 bp):
GAAACGTAGGTATGGTATCATCCATACGAGTTGTGAAATATAGGTATGGTATTAACCATACTGAG
CTATGAAACGTAGGTATGGTGTCATCCATACCGAGTTGT
Found at i:1759685 original size:1 final size:1
Alignment explanation
Indices: 1759674--1759703 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
1759664 GGGGTAGTTG
*
1759674 TTTTGTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1759704 GTGGGATTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.03, T:0.97
Consensus pattern (1 bp):
T
Found at i:1761382 original size:30 final size:30
Alignment explanation
Indices: 1761317--1761388 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
1761307 GACAAATTTT
* **
1761317 GCAGCAACTACAACTACAGCAACTGTGACA
1 GCAGCAACAACAACTACAGCAACTACGACA
* *
1761347 ACAGCAACAACGACTACAGCAACTACGACA
1 GCAGCAACAACAACTACAGCAACTACGACA
*
1761377 GCAGCAAGAACA
1 GCAGCAACAACA
1761389 GCTGTGTCGT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.44, C:0.31, G:0.17, T:0.08
Consensus pattern (30 bp):
GCAGCAACAACAACTACAGCAACTACGACA
Found at i:1761383 original size:15 final size:15
Alignment explanation
Indices: 1761318--1761375 Score: 71
Period size: 15 Copynumber: 3.9 Consensus size: 15
1761308 ACAAATTTTG
*
1761318 CAGCAACTACAACTA
1 CAGCAACTACGACTA
** *
1761333 CAGCAACTGTGACAA
1 CAGCAACTACGACTA
*
1761348 CAGCAACAACGACTA
1 CAGCAACTACGACTA
1761363 CAGCAACTACGAC
1 CAGCAACTACGAC
1761376 AGCAGCAAGA
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.43, C:0.33, G:0.14, T:0.10
Consensus pattern (15 bp):
CAGCAACTACGACTA
Found at i:1766234 original size:14 final size:14
Alignment explanation
Indices: 1766215--1766245 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
1766205 AACATTTTAA
*
1766215 TGGAATGTAATTTT
1 TGGAATGTAATTGT
1766229 TGGAATGTAATTGT
1 TGGAATGTAATTGT
1766243 TGG
1 TGG
1766246 GGGAAAAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45
Consensus pattern (14 bp):
TGGAATGTAATTGT
Found at i:1768258 original size:11 final size:11
Alignment explanation
Indices: 1768242--1768266 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1768232 GTATAAATGT
1768242 AATATCCCTAA
1 AATATCCCTAA
1768253 AATATCCCTAA
1 AATATCCCTAA
1768264 AAT
1 AAT
1768267 TGATATCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (11 bp):
AATATCCCTAA
Found at i:1769613 original size:2 final size:2
Alignment explanation
Indices: 1769606--1769652 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
1769596 AAATATGTAA
1769606 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1769648 AT AT A
1 AT AT A
1769653 GTAGATGAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1774329 original size:2 final size:2
Alignment explanation
Indices: 1774322--1774352 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1774312 TTTGTCAACT
1774322 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1774353 TATGTGATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1774622 original size:2 final size:2
Alignment explanation
Indices: 1774615--1774657 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
1774605 ATGAACCCTT
1774615 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1774657 T
1 T
1774658 GTTTTGTTAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1781030 original size:43 final size:45
Alignment explanation
Indices: 1780952--1781047 Score: 126
Period size: 43 Copynumber: 2.2 Consensus size: 45
1780942 AGCCTCAAGC
* *
1780952 CTTATCTCTCTGAGGTAGCAAGAGAGAAAGTTGAAGATTG-AG-T
1 CTTATCTCTCTGAGGTAGCAAGAAAGAAAGCTGAAGATTGAAGAT
* *
1780995 CTTATCTTTCTGAGGTAGCAAGAAAG-CAGACTGAAGATTGAAGAT
1 CTTATCTCTCTGAGGTAGCAAGAAAGAAAG-CTGAAGATTGAAGAT
1781040 CTTATCTC
1 CTTATCTC
1781048 CCTAAGCAGT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
42 2 0.04
43 33 0.73
44 2 0.04
45 8 0.18
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (45 bp):
CTTATCTCTCTGAGGTAGCAAGAAAGAAAGCTGAAGATTGAAGAT
Found at i:1781232 original size:176 final size:176
Alignment explanation
Indices: 1780907--1781293 Score: 476
Period size: 176 Copynumber: 2.2 Consensus size: 176
1780897 AAGAGGCAAA
** *
1780907 TCTTATCTTTATGTATCGGCAATGAAGCAGATTTAAGCCTCAAGCCTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCAATGAAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAGGTAGCA
* *
1780972 AGAGAGAAAGTTGAAGATTGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAA
66 AGAGAGAAAGTTGAAGATTGAGTCTTATCTTCCTGAGGAAGCAAGAAAGCAGACTGAAGATTGAA
1781037 GATCTTATCTCCCTAAGCAGTAGCGGAGAAGGTCGAAGATGGCTAG
131 GATCTTATCTCCCTAAGCAGTAGCGGAGAAGGTCGAAGATGGCTAG
* * * * * *
1781083 TCTTATCTCCATGTATCGGTAATGGAGTAGATTTTAGCCACTAGCCTTATCTCTCTGAGTTAGCA
1 TCTTATCTCCATGTATCGGCAATGAAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAGGTAGCA
* * ** *
1781148 AGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGAAGCAAGGAAGCAGACTGAAGATTGA
66 AGAGAGAAAGTTGAAGATTG-AGTCTTATCTTCCTGAGGAAGCAAGAAAGCAGACTGAAGATTGA
* * * ** * * *
1781213 AGATC-TATTTCCTTAAGCAGTTGTAGAGCA--TC-AAGGATGGCAAA
130 AGATCTTATCTCCCTAAGCAGTAGCGGAGAAGGTCGAA-GATGGCTAG
* * * *
1781257 TCTTATTTCTATGTATTGGCAATGGAGCAGATTTAAG
1 TCTTATCTCCATGTATCGGCAATGAAGCAGATTTAAG
1781294 TCCCCAAGAT
Statistics
Matches: 179, Mismatches: 30, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
173 2 0.01
174 40 0.22
176 91 0.51
177 46 0.26
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (176 bp):
TCTTATCTCCATGTATCGGCAATGAAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAGGTAGCA
AGAGAGAAAGTTGAAGATTGAGTCTTATCTTCCTGAGGAAGCAAGAAAGCAGACTGAAGATTGAA
GATCTTATCTCCCTAAGCAGTAGCGGAGAAGGTCGAAGATGGCTAG
Found at i:1782003 original size:10 final size:10
Alignment explanation
Indices: 1781990--1782014 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
1781980 ACAAGCAATG
1781990 GACAGCAAAT
1 GACAGCAAAT
1782000 GACAGCAAAT
1 GACAGCAAAT
1782010 GACAG
1 GACAG
1782015 TGATGAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.20, G:0.24, T:0.08
Consensus pattern (10 bp):
GACAGCAAAT
Found at i:1782349 original size:18 final size:18
Alignment explanation
Indices: 1782316--1782350 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
1782306 TTCGCATTTA
1782316 AAACAGAAAGAAAGAAAG
1 AAACAGAAAGAAAGAAAG
1782334 AAACA-AAAGAAGAGAAA
1 AAACAGAAAGAA-AGAAA
1782351 AAAAACTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.74, C:0.06, G:0.20, T:0.00
Consensus pattern (18 bp):
AAACAGAAAGAAAGAAAG
Found at i:1784355 original size:2 final size:2
Alignment explanation
Indices: 1784348--1784376 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1784338 TTTGTCAACT
1784348 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1784377 TATGTGATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1786732 original size:26 final size:26
Alignment explanation
Indices: 1786703--1786810 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
1786693 TGGTACAAAT
*
1786703 TGATAATAGG-TTAGGTAAATGTTTCA
1 TGATAAT-GGATTAGGTAAATGTTCCA
*
1786729 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
1786755 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
1786781 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
1786807 TGAT
1 TGAT
1786811 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 2 0.03
26 74 0.97
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:1788401 original size:27 final size:26
Alignment explanation
Indices: 1788361--1788501 Score: 169
Period size: 27 Copynumber: 5.2 Consensus size: 26
1788351 AGGAAGCGTC
*
1788361 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
1788388 CTGGTGGCTCTGCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACAT-TATCTGA-T
* *
1788415 CTGGTGGCTATGCCACGGTTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
1788442 CTGGTGGCTCTGCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACAT-TATCTGA-T
*
1788469 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
1788496 CTGGTG
1 CTGGTG
1788502 ACTTCGTCAC
Statistics
Matches: 100, Mismatches: 6, Indels: 16
0.82 0.05 0.13
Matches are distributed among these distances:
26 10 0.10
27 87 0.87
28 3 0.03
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:1788443 original size:54 final size:53
Alignment explanation
Indices: 1788361--1788501 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 53
1788351 AGGAAGCGTC
1788361 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
*
1788415 CTGGTGGCTATGCCACGGTTATCTGATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
* *
1788469 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
1788502 ACTTCGTCAC
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 6 0.07
54 75 0.93
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
Found at i:1791750 original size:25 final size:27
Alignment explanation
Indices: 1791713--1791765 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
1791703 TCAAACATGC
1791713 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
1791739 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
1791765 A
1 A
1791766 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:1793287 original size:26 final size:26
Alignment explanation
Indices: 1793251--1793334 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
1793241 CATGAAATTC
1793251 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
1793277 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
1793303 TTATCATGGAACGTTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
1793329 TTATCA
1 TTATCA
1793335 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:1795950 original size:12 final size:14
Alignment explanation
Indices: 1795933--1795969 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
1795923 TCAAGGACTT
1795933 ATTTAATCAC-C-A
1 ATTTAATCACTCTA
*
1795945 ATTTAATCTCTCTA
1 ATTTAATCACTCTA
1795959 ATTTAATCACT
1 ATTTAATCACT
1795970 TTACAAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
12 9 0.43
13 1 0.05
14 11 0.52
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (14 bp):
ATTTAATCACTCTA
Found at i:1796086 original size:27 final size:29
Alignment explanation
Indices: 1796030--1796096 Score: 93
Period size: 28 Copynumber: 2.3 Consensus size: 29
1796020 ATACTTAATA
*
1796030 ATTTATCTAATTTACTTACTAAATATTTTT
1 ATTT-TCTAATTTAATTACTAAATATTTTT
*
1796060 A-TTTCTAATTTAATTA-TTAATATTTTT
1 ATTTTCTAATTTAATTACTAAATATTTTT
1796087 ATTTTCTAAT
1 ATTTTCTAAT
1796097 CCCGCACTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 11 0.32
28 20 0.59
29 2 0.06
30 1 0.03
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (29 bp):
ATTTTCTAATTTAATTACTAAATATTTTT
Found at i:1797338 original size:9 final size:9
Alignment explanation
Indices: 1797326--1797377 Score: 54
Period size: 9 Copynumber: 5.6 Consensus size: 9
1797316 AACTTTTTCT
1797326 ATTTTTTGA
1 ATTTTTTGA
1797335 A-TTTTTGA
1 ATTTTTTGA
1797343 TTCATTTTTTTGA
1 ---A-TTTTTTGA
1797356 ATTTTTTGA
1 ATTTTTTGA
1797365 ATTTTTT-A
1 ATTTTTTGA
1797373 ATTTT
1 ATTTT
1797378 AAAAAAATTG
Statistics
Matches: 38, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
8 13 0.34
9 16 0.42
10 1 0.03
11 1 0.03
13 7 0.18
ACGTcount: A:0.21, C:0.02, G:0.08, T:0.69
Consensus pattern (9 bp):
ATTTTTTGA
Found at i:1797532 original size:19 final size:20
Alignment explanation
Indices: 1797508--1797547 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
1797498 ACAATTCACC
*
1797508 AAAATTTTTTATATTT-TAT
1 AAAATTTTTAATATTTATAT
1797527 AAAATTTTTAATATTTATAT
1 AAAATTTTTAATATTTATAT
1797547 A
1 A
1797548 TTATTATGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
AAAATTTTTAATATTTATAT
Found at i:1802175 original size:2 final size:2
Alignment explanation
Indices: 1802168--1802200 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
1802158 TAAATATTCT
*
1802168 TC TC TC TC TC CC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1802201 TTTAAGTAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
TC
Found at i:1813802 original size:2 final size:2
Alignment explanation
Indices: 1813797--1813837 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
1813787 CTGATGTGTG
1813797 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1813838 CTGATATCTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1818993 original size:44 final size:42
Alignment explanation
Indices: 1818943--1819142 Score: 242
Period size: 43 Copynumber: 4.6 Consensus size: 42
1818933 AAAAATTTGT
*
1818943 GGCGTTTATTGGAAAAAACGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTT-TTGG-AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
*
1818987 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTT-TTGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
1819030 GGCGTTTGTTGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTT-TTGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
* * **
1819073 GGCGTTTGTGCGTAAAGCGCCGCTAAACATCTAA-GCTTTTAGC
1 GGCGTTTTTG-GAAAAGCGCCGCTAAAGGTC-AAGGCTTTTAGC
**
1819116 GGCGCTTTTTTTACAAA-CGCCGCTAAA
1 GGCG-TTTTTGGA-AAAGCGCCGCTAAA
1819143 TTTGGCAGAT
Statistics
Matches: 140, Mismatches: 12, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
42 2 0.01
43 119 0.85
44 19 0.14
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (42 bp):
GGCGTTTTTGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
Found at i:1819016 original size:43 final size:43
Alignment explanation
Indices: 1818956--1819119 Score: 258
Period size: 43 Copynumber: 3.8 Consensus size: 43
1818946 GTTTATTGGA
*
1818956 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
1818999 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTTGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
1819042 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGCG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
* **
1819085 TAAAGCGCCGCTAAACATCTAA-GCTTTTAGCGGCG
1 AAAAGCGCCGCTAAAGGTC-AAGGCTTTTAGCGGCG
1819120 CTTTTTTTAC
Statistics
Matches: 113, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
43 111 0.98
44 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
Found at i:1819137 original size:86 final size:85
Alignment explanation
Indices: 1818943--1819142 Score: 269
Period size: 86 Copynumber: 2.3 Consensus size: 85
1818933 AAAAATTTGT
* *
1818943 GGCGTTTATTGGAAAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCC
1 GGCGTTTGTTGG--AAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGCGAAAAGCGCC
**
1819008 GCTAAAGGTCAAGGCTTTTAGC
64 GCTAAACATCAAGGCTTTTAGC
*
1819030 GGCGTTTGTTGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGCGTAAAGCGCCG
1 GGCGTTTGTTGGAAAA-CGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGCGAAAAGCGCCG
1819095 CTAAACATCTAA-GCTTTTAGC
65 CTAAACATC-AAGGCTTTTAGC
**
1819116 GGCGCTTT-TTTTACAAACGCCGCTAAA
1 GGCG-TTTGTTGGA-AAACGCCGCTAAA
1819143 TTTGGCAGAT
Statistics
Matches: 102, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
85 4 0.04
86 79 0.77
87 19 0.19
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (85 bp):
GGCGTTTGTTGGAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGCGAAAAGCGCCGC
TAAACATCAAGGCTTTTAGC
Found at i:1819229 original size:31 final size:31
Alignment explanation
Indices: 1819194--1819274 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 31
1819184 TTTTCTGCAT
* *
1819194 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * * *
1819225 TAAAATGCAGCCAAAAACAGCAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
*
1819256 TAAAAAATACAACCAAAAA
1 T--AAAATCCAACCAAAAA
1819275 TATTAATTCT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 26 0.65
33 14 0.35
ACGTcount: A:0.62, C:0.19, G:0.04, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:1819547 original size:21 final size:21
Alignment explanation
Indices: 1819523--1819565 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
1819513 CGTGCCTCTA
*
1819523 CCTCTCTCGCTGCAGCCGCTG
1 CCTCCCTCGCTGCAGCCGCTG
* * *
1819544 CCTCCCTCTCTGCTGCCTCTG
1 CCTCCCTCGCTGCAGCCGCTG
1819565 C
1 C
1819566 TCTAAGTTGT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.02, C:0.51, G:0.19, T:0.28
Consensus pattern (21 bp):
CCTCCCTCGCTGCAGCCGCTG
Found at i:1825219 original size:9 final size:9
Alignment explanation
Indices: 1825205--1825420 Score: 125
Period size: 9 Copynumber: 23.6 Consensus size: 9
1825195 TATTTAAGTA
1825205 TTATGTAAG
1 TTATGTAAG
*
1825214 TTATGTAAT
1 TTATGTAAG
*
1825223 TTATGATATG
1 TTATG-TAAG
* * *
1825233 ATATAT-AT
1 TTATGTAAG
*
1825241 TTATGTAAA
1 TTATGTAAG
* *
1825250 TTATAT-AT
1 TTATGTAAG
*
1825258 TTATCTAAG
1 TTATGTAAG
*
1825267 TTATATAAG
1 TTATGTAAG
1825276 TTATGTAAG
1 TTATGTAAG
*
1825285 TTATGTAAA
1 TTATGTAAG
*
1825294 TTATGATATAAAA
1 TTATG---T-AAG
*
1825307 TATATTTAAG
1 T-TATGTAAG
1825317 TATTATGTAAG
1 --TTATGTAAG
* *
1825328 TTATAT-AT
1 TTATGTAAG
*
1825336 TTATCTAAG
1 TTATGTAAG
*
1825345 TTATATAAG
1 TTATGTAAG
*
1825354 TTATATAAG
1 TTATGTAAG
1825363 TTATGT-AG
1 TTATGTAAG
*
1825371 TTATATAAG
1 TTATGTAAG
1825380 TTATGTAAG
1 TTATGTAAG
* *
1825389 TTATATATG
1 TTATGTAAG
*
1825398 TTATATAAG
1 TTATGTAAG
*
1825407 TTATGTAAA
1 TTATGTAAG
1825416 TTATG
1 TTATG
1825421 ATATCAAATA
Statistics
Matches: 162, Mismatches: 33, Indels: 24
0.74 0.15 0.11
Matches are distributed among these distances:
8 23 0.14
9 115 0.71
10 7 0.04
11 8 0.05
12 2 0.01
13 4 0.02
14 3 0.02
ACGTcount: A:0.39, C:0.01, G:0.12, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:1825283 original size:71 final size:76
Alignment explanation
Indices: 1825205--1825369 Score: 241
Period size: 78 Copynumber: 2.2 Consensus size: 76
1825195 TATTTAAGTA
* *
1825205 TTATGTAAGTTATGTAATTTATGATAT-GATATA-T-A-T-TTATGTAAATTATATATTTATCTA
1 TTATGTAAGTTATGTAAATTATGATATAAATATATTAAGTATTATGTAAATTATATATTTATCTA
1825265 AGTTATATAAG
66 AGTTATATAAG
*
1825276 TTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAAGTTATATATTTATC
1 TTATGTAAGTTATGTAAATTATGATAT-AAATATA-TTAAGTATTATGTAAATTATATATTTATC
1825341 TAAGTTATATAAG
64 TAAGTTATATAAG
*
1825354 TTATATAAGTTATGTA
1 TTATGTAAGTTATGTA
1825370 GTTATATAAG
Statistics
Matches: 83, Mismatches: 4, Indels: 7
0.88 0.04 0.07
Matches are distributed among these distances:
71 26 0.31
73 5 0.06
75 1 0.01
76 1 0.01
77 1 0.01
78 49 0.59
ACGTcount: A:0.39, C:0.01, G:0.12, T:0.48
Consensus pattern (76 bp):
TTATGTAAGTTATGTAAATTATGATATAAATATATTAAGTATTATGTAAATTATATATTTATCTA
AGTTATATAAG
Found at i:1825284 original size:18 final size:18
Alignment explanation
Indices: 1825205--1825420 Score: 144
Period size: 18 Copynumber: 12.3 Consensus size: 18
1825195 TATTTAAGTA
* *
1825205 TTATGTAAGTTATGTAAT
1 TTATGTAAGTTATATAAG
* * *
1825223 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATATAAG
* *
1825241 TTATGTAAATTATAT-AT
1 TTATGTAAGTTATATAAG
*
1825258 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* *
1825276 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
*
1825294 TTATG--A--TATA-AAA
1 TTATGTAAGTTATATAAG
* *
1825307 TATATTTAAGTATTATGTAAG
1 T-TATGTAAG--TTATATAAG
* * *
1825328 TTATAT-ATTTATCTAAG
1 TTATGTAAGTTATATAAG
*
1825345 TTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAG
1825363 TTATGT-AGTTATATAAG
1 TTATGTAAGTTATATAAG
*
1825380 TTATGTAAGTTATATATG
1 TTATGTAAGTTATATAAG
* * *
1825398 TTATATAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
1825416 TTATG
1 TTATG
1825421 ATATCAAATA
Statistics
Matches: 158, Mismatches: 28, Indels: 24
0.75 0.13 0.11
Matches are distributed among these distances:
13 4 0.03
14 6 0.04
16 2 0.01
17 53 0.34
18 75 0.47
19 8 0.05
20 7 0.04
21 3 0.02
ACGTcount: A:0.39, C:0.01, G:0.12, T:0.48
Consensus pattern (18 bp):
TTATGTAAGTTATATAAG
Found at i:1825545 original size:15 final size:15
Alignment explanation
Indices: 1825525--1825580 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
1825515 AAGTAGCGGG
1825525 ATTAAATAATATTTA
1 ATTAAATAATATTTA
1825540 ATTAAATAATATTT-
1 ATTAAATAATATTTA
1825554 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
1825569 ATTAAATAATAT
1 ATTAAATAATAT
1825581 ACATGTCGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.44
16 6 0.17
17 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:1825785 original size:24 final size:24
Alignment explanation
Indices: 1825757--1825824 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
1825747 ACTTAAATGG
1825757 TAAAACGGACGATAATATTTGTAA
1 TAAAACGGACGATAATATTTGTAA
*
1825781 TAAAACGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTAA
*
1825805 TAAAACGGACGAGAATATTT
1 TAAAACGGACGATAATATTT
1825825 CAATAATAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.03
24 38 0.95
25 1 0.03
ACGTcount: A:0.46, C:0.07, G:0.19, T:0.28
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTAA
Found at i:1826797 original size:371 final size:373
Alignment explanation
Indices: 1825912--1826824 Score: 1803
Period size: 371 Copynumber: 2.5 Consensus size: 373
1825902 AATTGAAACA
1825912 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1825977 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
1826042 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
131 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
1826107 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
196 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
1826172 TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
261 TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
1826237 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
326 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
1826285 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1826350 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
1826415 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
131 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
1826480 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATAT-AAAAAATAGTAATTTGAATA
196 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
1826544 TAATAATAT-AAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
261 TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
1826608 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
326 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
1826656 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1826721 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
*
1826786 AATAAGGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTT
131 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTT
1826825 AATGGACAAG
Statistics
Matches: 539, Mismatches: 1, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
371 271 0.50
372 29 0.05
373 239 0.44
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (373 bp):
TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
Found at i:1827879 original size:21 final size:21
Alignment explanation
Indices: 1827853--1827892 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
1827843 ACACTAATTC
*
1827853 ATACTTAAGTTGAATCAAATA
1 ATACTTAAGTTGAACCAAATA
1827874 ATACTTAAGTTGAACCAAA
1 ATACTTAAGTTGAACCAAA
1827893 ATATAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (21 bp):
ATACTTAAGTTGAACCAAATA
Found at i:1830118 original size:134 final size:133
Alignment explanation
Indices: 1829948--1830200 Score: 479
Period size: 134 Copynumber: 1.9 Consensus size: 133
1829938 GAATTCAACA
1829948 ATATAAAACGTGAGCAACAAGACAACAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAACAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1830013 TAAGTTGGATAGAAACATGAAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTT
66 TAAGTTGGATAGAAACATG-AAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTT
1830078 TATT
130 TATT
*
1830082 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAACAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
*
1830147 TAAGTTGGATAGAAACATGAAAACAGACCAAAATAACATCTAAATAACCAAAAT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAAT
1830201 GGAATCACCA
Statistics
Matches: 117, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
133 34 0.29
134 83 0.71
ACGTcount: A:0.52, C:0.19, G:0.09, T:0.20
Consensus pattern (133 bp):
ATATAAAACGTGAGCAACAAGACAACAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
ATT
Found at i:1832996 original size:15 final size:15
Alignment explanation
Indices: 1832976--1833007 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
1832966 AAATAATATT
*
1832976 TTATATATATTTATC
1 TTATATACATTTATC
1832991 TTATATACATTTATC
1 TTATATACATTTATC
1833006 TT
1 TT
1833008 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:1834121 original size:38 final size:37
Alignment explanation
Indices: 1834073--1834150 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 37
1834063 GTTTTTAGCG
1834073 GCGTTTTACCTAAAGCGCCGCTAATGCTCTGGTTTTTA
1 GCGTTTTACCTAAAGCGCCGCTAATGCT-TGGTTTTTA
*
1834111 GCGTTTTACCTAAAGCGCCGCTAATGCTTTGTTTTTA
1 GCGTTTTACCTAAAGCGCCGCTAATGCTTGGTTTTTA
1834148 GCG
1 GCG
1834151 GCGTTTTAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
37 11 0.28
38 28 0.72
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (37 bp):
GCGTTTTACCTAAAGCGCCGCTAATGCTTGGTTTTTA
Found at i:1834872 original size:3 final size:3
Alignment explanation
Indices: 1834861--1834943 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
1834851 TTTATTTTTT
* *
1834861 TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
1834904 TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
1834944 ATATACCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 7 0.11
3 49 0.75
4 7 0.11
5 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:1834918 original size:21 final size:18
Alignment explanation
Indices: 1834865--1834947 Score: 87
Period size: 18 Copynumber: 4.4 Consensus size: 18
1834855 TTTTTTTTAT
* *
1834865 TTTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTA
1834884 TTTATATTATTATTATTA
1 TTTATATTATTATTATTA
*
1834902 TTTCTCATGTATATATTATTA
1 TTTAT-AT-TAT-TATTATTA
1834923 TTTATATTATTATTA-TA
1 TTTATATTATTATTATTA
1834940 TTATATAT
1 TT-TATAT
1834948 ACCCTCTCCA
Statistics
Matches: 56, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
17 4 0.07
18 26 0.46
19 9 0.16
20 5 0.09
21 12 0.21
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (18 bp):
TTTATATTATTATTATTA
Found at i:1835024 original size:3 final size:3
Alignment explanation
Indices: 1835018--1835073 Score: 53
Period size: 3 Copynumber: 18.0 Consensus size: 3
1835008 TTCTGACTAC
*
1835018 TAT TAT TAT TA- TAT ATAT ATAT GTAT TAT TGT T-T GTAT TAT TAT TAT
1 TAT TAT TAT TAT TAT -TAT -TAT -TAT TAT TAT TAT -TAT TAT TAT TAT
1835065 TAT TAT TAT
1 TAT TAT TAT
1835074 CACCCCTATT
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
2 3 0.06
3 33 0.70
4 11 0.23
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:1835068 original size:12 final size:13
Alignment explanation
Indices: 1835018--1835073 Score: 59
Period size: 12 Copynumber: 4.7 Consensus size: 13
1835008 TTCTGACTAC
*
1835018 TATTATTATTATA
1 TATTATTATTATG
1835031 TA-TA-TA-TATG
1 TATTATTATTATG
*
1835041 TATTATTGTT-TG
1 TATTATTATTATG
1835053 TATTATTATTAT-
1 TATTATTATTATG
1835065 TATTATTAT
1 TATTATTAT
1835074 CACCCCTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
10 5 0.14
11 4 0.11
12 23 0.64
13 4 0.11
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (13 bp):
TATTATTATTATG
Found at i:1836909 original size:61 final size:61
Alignment explanation
Indices: 1836843--1836979 Score: 158
Period size: 60 Copynumber: 2.3 Consensus size: 61
1836833 CAGTGTTAAC
* *
1836843 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAG-CCCCTTAC-AGTATC-AGAGTATAT
1 TGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGTCCCATTACAAG--TCGAGA-TATAT
* * * *
1836904 TGGGCC-TAGCCCATATCAGTATCAATTTGGGCCGTAGTCCTATTACAAGTCGAGATATAT
1 TGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGTCCCATTACAAGTCGAGATATAT
1836964 TGGGCCTTAG-CCATAT
1 TGGGCCTTAGCCCATAT
1836980 TAACATAGTT
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
60 46 0.70
61 18 0.27
62 2 0.03
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.30
Consensus pattern (61 bp):
TGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGTCCCATTACAAGTCGAGATATAT
Found at i:1838751 original size:26 final size:26
Alignment explanation
Indices: 1838722--1838829 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
1838712 TGGTACAAAT
1838722 TGATAATTGG-TTAGGTAAATGTTCCA
1 TGATAA-TGGATTAGGTAAATGTTCCA
*
1838748 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
1838774 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
1838800 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
1838826 TGAT
1 TGAT
1838830 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 3 0.04
26 74 0.96
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:1840863 original size:137 final size:137
Alignment explanation
Indices: 1840617--1841040 Score: 794
Period size: 137 Copynumber: 3.1 Consensus size: 137
1840607 GAGTAGTCTC
*
1840617 CCCAAATGGGCTTGCATATGTTTACTAATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
1840682 TATTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
1840747 ACTGTTA
131 ACTGTTA
*
1840754 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAT
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1840819 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
1840884 ACTGTTA
131 ACTGTTA
1840891 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
1840956 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAATACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
1841021 ACTGTTA
131 ACTGTTA
**
1841028 CCTGAATGGGCTT
1 CCCAAATGGGCTT
1841041 AGGCCCAATG
Statistics
Matches: 280, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 280 1.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:1842721 original size:19 final size:18
Alignment explanation
Indices: 1842684--1842727 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
1842674 ATATATGCAG
1842684 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
1842701 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
1842720 TACTAATT
1 TAATAATT
1842728 AAAATTTTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:1847308 original size:24 final size:24
Alignment explanation
Indices: 1847276--1847324 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
1847266 GTCTAATCAG
1847276 TTAGAGATCATCAGGTGTATAGAC
1 TTAGAGATCATCAGGTGTATAGAC
1847300 TTAGAGATCATCAGGTGTATAGAC
1 TTAGAGATCATCAGGTGTATAGAC
1847324 T
1 T
1847325 CTGATTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (24 bp):
TTAGAGATCATCAGGTGTATAGAC
Found at i:1850738 original size:17 final size:17
Alignment explanation
Indices: 1850726--1850766 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
1850716 TAAAAATATG
1850726 AAATTGAATAAAAGATC
1 AAATTGAATAAAAGATC
* *
1850743 AAATTGAATGAAACATC
1 AAATTGAATAAAAGATC
*
1850760 GAATTGA
1 AAATTGA
1850767 GTACTAACGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.54, C:0.07, G:0.15, T:0.24
Consensus pattern (17 bp):
AAATTGAATAAAAGATC
Found at i:1862389 original size:42 final size:42
Alignment explanation
Indices: 1862293--1862450 Score: 167
Period size: 44 Copynumber: 3.7 Consensus size: 42
1862283 TATGTGTTTC
* * *
1862293 TGTGTAAGAACACGTCTGGGACGTTGGTATCG-ACTTATGATTT
1 TGTGTAAGACCACGTCTGGGACATTGGCATCGTA-TT-TGATTT
*
1862336 ATGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTT
1 -TGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTT
* * * *
1862379 TGTGTAAGACC-TGTCTAGGACAGTGGCATCGATATTTGATTA
1 TGTGTAAGACCACGTCTGGGACATTGGCATCG-TATTTGATTT
** *
1862421 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTGTAAGACCACGTCTGGGACATTGGCAT
1862451 TGTACGAGCT
Statistics
Matches: 98, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
41 18 0.18
42 29 0.30
43 20 0.20
44 30 0.31
45 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (42 bp):
TGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTT
Found at i:1862406 original size:41 final size:44
Alignment explanation
Indices: 1862330--1862450 Score: 144
Period size: 42 Copynumber: 2.8 Consensus size: 44
1862320 TATCGACTTA
* *
1862330 TGATTTATGTGTAAGACCATGTCTGGGACATTGGCATCG-TATT
1 TGATTTATGTGTAAGACCATGTCTAGGACAGTGGCATCGATATT
1862373 TGATTT-TGTGTAAGACC-TGTCTAGGACAGTGGCATCGATATT
1 TGATTTATGTGTAAGACCATGTCTAGGACAGTGGCATCGATATT
** * *
1862415 TGA-TTACATGTAAGACCACGTCTGGGAC-GTTGGCAT
1 TGATTTATGTGTAAGACCATGTCTAGGACAG-TGGCAT
1862451 TGTACGAGCT
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
41 20 0.29
42 28 0.41
43 20 0.29
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (44 bp):
TGATTTATGTGTAAGACCATGTCTAGGACAGTGGCATCGATATT
Found at i:1864838 original size:46 final size:46
Alignment explanation
Indices: 1864788--1864963 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 46
1864778 TGTTTGGGCA
* * *
1864788 TCCGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
*** * ** ** *
1864834 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGTAAACG
* * *
1864881 TCCGAGCTCGTTGAGTTGAATCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* *
1864927 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1864964 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 26, Indels: 2
0.79 0.20 0.02
Matches are distributed among these distances:
46 70 0.68
47 33 0.32
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:1864943 original size:93 final size:93
Alignment explanation
Indices: 1864784--1864955 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
1864774 AGGATGTTTG
* * *
1864784 GGCATCCGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGACTTGAATCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
1864849 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * ** *
1864877 GGCATCCGAGCTCGTTGAGTTGAATCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGACTTGAATCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
1864942 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
1864956 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGACTTGAATCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:1866724 original size:26 final size:26
Alignment explanation
Indices: 1866687--1866822 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
1866677 TGATACAAAT
* *
1866687 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
1866713 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
1866739 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
1866765 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
1866791 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
1866817 TGATAA
1 TGATAA
1866823 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:1868843 original size:136 final size:136
Alignment explanation
Indices: 1868600--1868884 Score: 527
Period size: 136 Copynumber: 2.1 Consensus size: 136
1868590 GAGTAGTCTC
*
1868600 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1868665 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGG-TCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
1868729 CTGTTA
131 CTGTTA
1868735 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1868800 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
1868865 ACTGTTA
130 ACTGTTA
**
1868872 CCTGAATGGGCTT
1 CCCAAATGGGCTT
1868885 AGGCCCAATG
Statistics
Matches: 145, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
135 20 0.14
136 93 0.64
137 32 0.22
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:1872609 original size:26 final size:26
Alignment explanation
Indices: 1872572--1872707 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
1872562 TGATACAAAT
* *
1872572 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
1872598 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
1872624 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
1872650 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
1872676 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
1872702 TGATAA
1 TGATAA
1872708 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:1874733 original size:137 final size:135
Alignment explanation
Indices: 1874489--1874773 Score: 525
Period size: 137 Copynumber: 2.1 Consensus size: 135
1874479 GAGTAGTCTC
*
1874489 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGCCTATGGGCCATACTG
1 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGCCTATGGGCCATACTG
1874554 TTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
66 TTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
1874619 TGTTA
131 TGTTA
1874624 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAAT-GGCCTATGGGCCATAC
1874689 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
64 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
1874754 ACTGTTA
129 ACTGTTA
**
1874761 CCTGAATGGGCTT
1 CCCAAATGGGCTT
1874774 AGGCCCAATG
Statistics
Matches: 145, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
135 20 0.14
136 26 0.18
137 99 0.68
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (135 bp):
CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGCCTATGGGCCATACTG
TTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
TGTTA
Found at i:1878346 original size:71 final size:71
Alignment explanation
Indices: 1878262--1878425 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
1878252 CGATTTGTCT
1878262 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1878327 CTTTCA
66 CTTTCA
1878333 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1878398 CTTTCA
66 CTTTCA
1878404 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
1878426 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:1878463 original size:71 final size:70
Alignment explanation
Indices: 1878262--1878459 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
1878252 CGATTTGTCT
* * * *
1878262 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
1878327 CTTTCA
65 CTTTCA
* * * *
1878333 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
1878398 CTTTCA
65 CTTTCA
* *
1878404 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
1878460 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:1885925 original size:71 final size:71
Alignment explanation
Indices: 1885841--1886004 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
1885831 CGATTTGTCT
1885841 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1885906 CTTTCA
66 CTTTCA
1885912 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1885977 CTTTCA
66 CTTTCA
1885983 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
1886005 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:1886042 original size:71 final size:70
Alignment explanation
Indices: 1885841--1886038 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
1885831 CGATTTGTCT
* * * *
1885841 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
1885906 CTTTCA
65 CTTTCA
* * * *
1885912 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
1885977 CTTTCA
65 CTTTCA
* *
1885983 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
1886039 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:1889617 original size:51 final size:51
Alignment explanation
Indices: 1889554--1889686 Score: 167
Period size: 51 Copynumber: 2.6 Consensus size: 51
1889544 TAATCAAATC
* * * * *
1889554 TCTAAGAATATAAAATCATATCTTCTAAGATTACCTATCTTATCTAAGATA
1 TCTAAGATTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATA
* ** *
1889605 TGTAATCTTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATC
1 TCTAAGATTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATA
* *
1889656 TCTAAGATTATAAAATTATATCTTTTAAGAT
1 TCTAAGATTATAAAATAATATCTTATAAGAT
1889687 CATGTTTCCA
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (51 bp):
TCTAAGATTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATA
Found at i:1894823 original size:2 final size:2
Alignment explanation
Indices: 1894816--1894842 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1894806 AAACTATCAT
1894816 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1894843 TTTCTTTAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:1897482 original size:17 final size:17
Alignment explanation
Indices: 1897444--1897490 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
1897434 ATGGTAGATC
* *
1897444 GTGTGGGTCACAAGGTCT
1 GTGTGGGTCAC-ATGACT
1897462 -TGTGGGTCACATGACT
1 GTGTGGGTCACATGACT
1897478 GTGTGGGTCACAT
1 GTGTGGGTCACAT
1897491 AGGCATGTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 4 0.15
17 22 0.85
ACGTcount: A:0.17, C:0.17, G:0.36, T:0.30
Consensus pattern (17 bp):
GTGTGGGTCACATGACT
Found at i:1897499 original size:17 final size:17
Alignment explanation
Indices: 1897445--1897499 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
1897435 TGGTAGATCG
*
1897445 TGTGGGTCACA-AGGTCT
1 TGTGGGTCACATAGG-CA
* *
1897462 TGTGGGTCACAT-GACTG
1 TGTGGGTCACATAGGC-A
1897479 TGTGGGTCACATAGGCA
1 TGTGGGTCACATAGGCA
1897496 TGTG
1 TGTG
1897500 TCAGGTTGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 1 0.03
17 28 0.90
18 2 0.06
ACGTcount: A:0.18, C:0.16, G:0.36, T:0.29
Consensus pattern (17 bp):
TGTGGGTCACATAGGCA
Found at i:1899219 original size:32 final size:32
Alignment explanation
Indices: 1899182--1899245 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
1899172 TTAAAGAGTT
1899182 AAAATCAGGAAGAGAACCTCAGCAACAAAACC
1 AAAATCAGGAAGAGAACCTCAGCAACAAAACC
1899214 AAAATCAGGAAGAGAACCTCAGCAACAAAACC
1 AAAATCAGGAAGAGAACCTCAGCAACAAAACC
1899246 CTCCACCCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.53, C:0.25, G:0.16, T:0.06
Consensus pattern (32 bp):
AAAATCAGGAAGAGAACCTCAGCAACAAAACC
Found at i:1900579 original size:29 final size:28
Alignment explanation
Indices: 1900541--1900595 Score: 92
Period size: 29 Copynumber: 1.9 Consensus size: 28
1900531 AATATTATGT
*
1900541 TAAATGTAATAACTAATAGCATAATTTA
1 TAAATGTAATAACTAATAACATAATTTA
1900569 TAAATTGTAATAACTAATAACATAATT
1 TAAA-TGTAATAACTAATAACATAATT
1900596 ATACATAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 4 0.16
29 21 0.84
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.36
Consensus pattern (28 bp):
TAAATGTAATAACTAATAACATAATTTA
Done.