Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 600 of 770
Found at i:187759366 original size:72 final size:71
Alignment explanation
Indices: 187759236--187759379 Score: 252
Period size: 72 Copynumber: 2.0 Consensus size: 71
187759226 TGAACAACGT
* * *
187759236 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGACTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGACTCAACTCACCTCTCGCAATAT
187759301 GAGTTG
66 GAGTTG
187759307 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGACCCGAGACTCAACTCACCTCTCGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGACTCAACTCACCTCTCGCAATA
187759372 TGAGTTG
65 TGAGTTG
187759379 A
1 A
187759380 TTTTGAAAAA
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
71 8 0.12
72 61 0.88
ACGTcount: A:0.40, C:0.24, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGACTCAACTCACCTCTCGCAATAT
GAGTTG
Found at i:187767830 original size:12 final size:12
Alignment explanation
Indices: 187767800--187767851 Score: 61
Period size: 12 Copynumber: 4.2 Consensus size: 12
187767790 GCGACCGAGT
187767800 ATGATATGCAT-A
1 ATGA-ATGCATGA
*
187767812 GATGAATGTATGA
1 -ATGAATGCATGA
187767825 ATGAATGCATGA
1 ATGAATGCATGA
*
187767837 ATGAATGCATAA
1 ATGAATGCATGA
187767849 ATG
1 ATG
187767852 TCAAATGTAG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
12 30 0.86
13 5 0.14
ACGTcount: A:0.42, C:0.06, G:0.23, T:0.29
Consensus pattern (12 bp):
ATGAATGCATGA
Found at i:187770996 original size:29 final size:29
Alignment explanation
Indices: 187770964--187771098 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
187770954 ATACCCTCCG
** * *
187770964 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
187770993 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
187771022 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
187771051 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
187771080 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
187771099 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:187771031 original size:58 final size:58
Alignment explanation
Indices: 187770910--187771099 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
187770900 TACTCGATTT
* * * *** *
187770910 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
187770968 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
187771026 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
187771084 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
187771100 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:187780430 original size:29 final size:28
Alignment explanation
Indices: 187780360--187780434 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
187780350 ATACTCGATT
* *
187780360 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
187780388 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
187780417 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
187780435 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:187780451 original size:29 final size:29
Alignment explanation
Indices: 187780418--187780491 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
187780408 CCTTCGAGCT
187780418 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
187780447 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
187780476 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
187780492 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:187788327 original size:29 final size:29
Alignment explanation
Indices: 187788294--187788367 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
187788284 CCTTCGAGCT
187788294 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
187788323 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
187788352 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
187788368 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:187788328 original size:58 final size:58
Alignment explanation
Indices: 187788235--187788367 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
187788225 ATACTCGATT
* * * * *
187788235 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
187788293 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
187788351 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
187788368 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:187791748 original size:8 final size:8
Alignment explanation
Indices: 187791732--187791764 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
187791722 CTATAACAGC
187791732 CCAAAAAT
1 CCAAAAAT
*
187791740 CCCAAAAT
1 CCAAAAAT
187791748 CCAAAAAT
1 CCAAAAAT
187791756 CCAAAAAT
1 CCAAAAAT
187791764 C
1 C
187791765 TTGAATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.58, C:0.30, G:0.00, T:0.12
Consensus pattern (8 bp):
CCAAAAAT
Found at i:187793873 original size:40 final size:38
Alignment explanation
Indices: 187793842--187793940 Score: 126
Period size: 39 Copynumber: 2.6 Consensus size: 38
187793832 CGGACTAGGA
187793842 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG
1 TCCGAAGGCATTCGTGCGAGTTAATAAATCC-GGCTAAG
* * * * * *
187793881 CCCGAAGGCATTTGTGCAAGTTACTAAACCCGGTTAAG
1 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGCTAAG
187793919 TCCCGAAGGCATTCGTGCGAGT
1 T-CCGAAGGCATTCGTGCGAGT
187793941 CACAATAACC
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
38 6 0.12
39 44 0.88
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (38 bp):
TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGCTAAG
Found at i:187793890 original size:39 final size:40
Alignment explanation
Indices: 187793790--187793971 Score: 160
Period size: 40 Copynumber: 4.6 Consensus size: 40
187793780 TCGAATGATG
* * *
187793790 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
187793830 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
*
187793870 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * *
187793909 -CCCGGTTAAGTCCCGAAGGCATTCGTGCGAGTCAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAA-A
* *
187793948 ACCGGGCTTCA-TCCCGAAGGCATT
1 TCCGGGC-TAAGTCCCGAAGGCATT
187793972 TGAGCGAGTC
Statistics
Matches: 115, Mismatches: 20, Indels: 14
0.77 0.13 0.09
Matches are distributed among these distances:
38 10 0.09
39 46 0.40
40 50 0.43
41 9 0.08
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:187793938 original size:78 final size:80
Alignment explanation
Indices: 187793790--187793940 Score: 211
Period size: 78 Copynumber: 1.9 Consensus size: 80
187793780 TCGAATGATG
* * *
187793790 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
187793855 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* *
187793870 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGG-TTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
187793931 TCGTGCGAGT
64 TCGTGCGAGT
187793941 CACAATAACC
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
77 1 0.02
78 23 0.36
79 22 0.34
80 18 0.28
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:187800206 original size:22 final size:21
Alignment explanation
Indices: 187800160--187800206 Score: 51
Period size: 22 Copynumber: 2.1 Consensus size: 21
187800150 TTCACTACTG
*
187800160 AAATCCATAACCAAAACATACC
1 AAATCAATAACCAAAACATA-C
187800182 AAATCAATATACCAAAATCAT-C
1 AAATCAATA-ACCAAAA-CATAC
187800204 AAA
1 AAA
187800207 CTTACATAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 12 0.55
23 7 0.32
24 3 0.14
ACGTcount: A:0.57, C:0.26, G:0.00, T:0.17
Consensus pattern (21 bp):
AAATCAATAACCAAAACATAC
Found at i:187801042 original size:43 final size:43
Alignment explanation
Indices: 187800986--187801068 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
187800976 CTTACATGTT
* * * * *
187800986 ATCACATATCGATGCCACTGTCCTAGACAGGGTCTTACACGAA
1 ATCAAATAACGATGCCAATGTCCCAAACAGGGTCTTACACGAA
* *
187801029 ATCAAATAACGATGCTAATGTCCCAAACATGGTCTTACAC
1 ATCAAATAACGATGCCAATGTCCCAAACAGGGTCTTACAC
187801069 ATAATCTCAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.24
Consensus pattern (43 bp):
ATCAAATAACGATGCCAATGTCCCAAACAGGGTCTTACACGAA
Found at i:187812454 original size:143 final size:141
Alignment explanation
Indices: 187812246--187812540 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
187812236 TGAGTTAAAT
*
187812246 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
187812311 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA--TGTGT
187812376 GTGTGCATGAGTA
129 GTGTGCATGAGTA
187812389 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
187812454 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
187812519 GTGCATGAGTA
131 GTGCATGAGTA
187812530 TTCGGCCATGC
1 TTCGGCCATGC
187812541 TATAGAATTT
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 29 0.19
143 122 0.81
ACGTcount: A:0.21, C:0.11, G:0.29, T:0.39
Consensus pattern (141 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
GTGCATGAGTA
Found at i:187813177 original size:29 final size:29
Alignment explanation
Indices: 187813144--187813274 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
187813134 GTGACGAGAT
*
187813144 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
187813173 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
187813202 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
187813231 -GACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
187813259 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
187813275 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
28 25 0.27
29 66 0.73
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:187813273 original size:57 final size:58
Alignment explanation
Indices: 187813145--187813265 Score: 163
Period size: 57 Copynumber: 2.1 Consensus size: 58
187813135 TGACGAGATT
* * * ** *
187813145 GGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATAA
* *
187813203 GGCACTAAGTGTGCATGCTGGAAAAATA-GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATAA
187813260 GGCACT
1 GGCACT
187813266 GGGTGTGCGA
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
57 29 0.53
58 26 0.47
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (58 bp):
GGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATAA
Found at i:187820368 original size:143 final size:140
Alignment explanation
Indices: 187820160--187820453 Score: 552
Period size: 143 Copynumber: 2.1 Consensus size: 140
187820150 TGAGTTAAAT
*
187820160 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
187820225 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAA-TTTGTGCCATTGAGTTCTTGTTGTTA--TGTGT
187820290 GTGTGCATGAGTA
128 GTGTGCATGAGTA
187820303 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
187820368 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTG
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTG
187820433 TGCATGAGTA
131 TGCATGAGTA
187820443 TTCGGCCATGC
1 TTCGGCCATGC
187820454 TATAGAATTT
Statistics
Matches: 150, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
140 29 0.19
142 26 0.17
143 95 0.63
ACGTcount: A:0.21, C:0.11, G:0.29, T:0.39
Consensus pattern (140 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTG
TGCATGAGTA
Found at i:187821130 original size:29 final size:29
Alignment explanation
Indices: 187821098--187821228 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
187821088 TGACGAGATT
* *
187821098 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAC
* *
187821127 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAC
*
187821156 GGCACTAAGTGTGCATGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAC
* * **
187821185 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAC
**
187821214 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
187821229 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAC
Found at i:187825170 original size:26 final size:26
Alignment explanation
Indices: 187825136--187825208 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
187825126 CTCTTTTAAT
* *
187825136 AACTGGGGCAAAAGCTCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
187825162 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
187825188 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
187825209 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:187830235 original size:55 final size:53
Alignment explanation
Indices: 187830126--187830381 Score: 233
Period size: 55 Copynumber: 4.8 Consensus size: 53
187830116 CATTAGGGTT
** *
187830126 CAAGGATACCATGTAAGACCATG-CTAAGGTATGGTAATTGGTAAGGTTTC-TAAGG
1 CAAGGATACCATGTAAGACCATGTC-AAGACATGG-CATTGGTAA-G-TTCATAAGG
* * *
187830181 CAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGG
* * * *
187830236 CAAAGG-TCCCATGTAAGACCATG-CGAAGGCATAGCATTGGTGAGTTCATAAGG
1 C-AAGGATACCATGTAAGACCATGTC-AAGACATGGCATTGGTAAGTTCATAAGG
*
187830289 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA--
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCAT-AAGG
* * * *
187830339 -AAGGATACCATGTAAGACCATGACAAGTCATCGCAATGGTAAG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
187830382 GTACCTGTGT
Statistics
Matches: 171, Mismatches: 21, Indels: 24
0.79 0.10 0.11
Matches are distributed among these distances:
49 40 0.23
51 1 0.01
52 8 0.05
53 42 0.25
54 10 0.06
55 65 0.38
56 5 0.03
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (53 bp):
CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGG
Found at i:187830302 original size:108 final size:110
Alignment explanation
Indices: 187830134--187830334 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
187830124 TTCAAGGATA
* * * *
187830134 CCATGTAAGACCATGCTAAGGTATGGTAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCGAAGGCATAGTAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
187830199 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
187830244 CCATGTAAGACCATGCGAAGGCATAG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCGAAGGCATAGTAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
187830306 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
187830335 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 7 0.09
110 23 0.28
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCGAAGGCATAGTAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:187830599 original size:16 final size:16
Alignment explanation
Indices: 187830578--187830608 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
187830568 ATAAATTTGA
*
187830578 TTAAGTAAGTTAGTAT
1 TTAAGTAAGTGAGTAT
187830594 TTAAGTAAGTGAGTA
1 TTAAGTAAGTGAGTA
187830609 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.23, T:0.39
Consensus pattern (16 bp):
TTAAGTAAGTGAGTAT
Found at i:187832128 original size:46 final size:46
Alignment explanation
Indices: 187832078--187832253 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
187832068 TGGTTGAGCA
187832078 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
187832124 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
187832169 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
187832217 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
187832254 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:187832234 original size:93 final size:93
Alignment explanation
Indices: 187832075--187832246 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
187832065 GGATGGTTGA
* *
187832075 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
187832140 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
187832168 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
187832233 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
187832247 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:187849739 original size:40 final size:39
Alignment explanation
Indices: 187849694--187849901 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
187849684 CGGAATACAA
*
187849694 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
187849734 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
187849774 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
187849814 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
187849854 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
187849894 CCGGATAT
1 CCGGATAT
187849902 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:187849834 original size:80 final size:80
Alignment explanation
Indices: 187849694--187849900 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
187849684 CGGAATACAA
* * *
187849694 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
187849758 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
187849774 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
187849838 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
187849854 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
187849901 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:187851914 original size:40 final size:39
Alignment explanation
Indices: 187851850--187852037 Score: 214
Period size: 39 Copynumber: 4.8 Consensus size: 39
187851840 GCTACTCGTT
* * * ** *
187851850 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
187851890 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
187851930 CAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * *
187851969 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * *
187852008 CAATTGCCTTCGGGCTTTGCCCGGTTATCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCA
187852038 CTCGAACATT
Statistics
Matches: 131, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 86 0.66
40 45 0.34
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:187851967 original size:39 final size:39
Alignment explanation
Indices: 187851886--187852038 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
187851876 TATGGTAACC
* *
187851886 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
187851926 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
187851965 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
187852004 CGCACAATTGCCTTCGGGCTTTGCCCGGTTATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
187852039 TCGAACATTC
Statistics
Matches: 104, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 87 0.84
40 17 0.16
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:187857645 original size:27 final size:27
Alignment explanation
Indices: 187857610--187857925 Score: 362
Period size: 27 Copynumber: 11.7 Consensus size: 27
187857600 TTAGTTTACC
* * *
187857610 AAATTACCAAAATACCCCCGATTAGCA
1 AAATTACCAAAATACCCCTGATTTGTA
* * * *
187857637 AAATTACC-AAATGCCCTTGATTAGCA
1 AAATTACCAAAATACCCCTGATTTGTA
* *
187857663 AAATTACCAAAAATACCCTTGGTTTGTA
1 AAATTACC-AAAATACCCCTGATTTGTA
187857691 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
*
187857718 AAATTACTAAAATACCCCTTG-TTTGTA
1 AAATTACCAAAATACCCC-TGATTTGTA
187857745 AAATTACCAAAATACCCCTTG-TTTGCT-
1 AAATTACCAAAATACCCC-TGATTTG-TA
*
187857772 AAATTACCAAAAT-CCCCT-AGTTGGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
* *
187857798 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
*
187857825 AAATTACCAAAATA-CCCTCGATTAGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
187857852 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
187857879 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
187857906 AAATTACTAAAATACCCCTG
1 AAATTACCAAAATACCCCTG
187857926 TAAGGTAGAA
Statistics
Matches: 255, Mismatches: 19, Indels: 30
0.84 0.06 0.10
Matches are distributed among these distances:
25 2 0.01
26 48 0.19
27 175 0.69
28 30 0.12
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:187857757 original size:81 final size:82
Alignment explanation
Indices: 187857610--187857922 Score: 401
Period size: 81 Copynumber: 3.9 Consensus size: 82
187857600 TTAGTTTACC
* * * * * *
187857610 AAATTACCAAAATACCCC-CGATTAGCAAAATTACC-AAAT-GCCCTTGATTAGCAAAATTACCA
1 AAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCCTTGATTTGTAAAATTACC-
187857672 AAAATACCCTTGGTTTGTA
64 AAAATACCCTTGGTTTGTA
*
187857691 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTTG-TTTGTAAAATTACCAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTTGATTTGTAAAATTACCAA
187857755 AATACCCCTT-GTTTGCT-
66 AATA-CCCTTGGTTTG-TA
* * *
187857772 AAATTACCAAAAT-CCCCTAGTTGGTAAAATTACCAAAATACCCC-TAATTTGTGAAATTACCAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTTGATTTGTAAAATTACCAA
* * *
187857835 AATACCCTCGATTAGTA
66 AATACCCTTGGTTTGTA
*
187857852 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCC-TGATTTGTAAAATTACTAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTTGATTTGTAAAATTACCAA
187857916 AATACCC
66 AATACCC
187857923 CTGTAAGGTA
Statistics
Matches: 205, Mismatches: 18, Indels: 18
0.85 0.07 0.07
Matches are distributed among these distances:
79 6 0.03
80 64 0.31
81 106 0.52
82 23 0.11
83 6 0.03
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.29
Consensus pattern (82 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTTGATTTGTAAAATTACCAA
AATACCCTTGGTTTGTA
Found at i:187857937 original size:27 final size:27
Alignment explanation
Indices: 187857610--187858047 Score: 224
Period size: 27 Copynumber: 16.3 Consensus size: 27
187857600 TTAGTTTACC
* * *
187857610 AAATTACCAAAATACCCCCGATTA-GCA
1 AAATTACCAAAATACCCCTG-TAAGGTA
* * * *
187857637 AAATTACC-AAATGCCCTTGATTA-GCA
1 AAATTACCAAAATACCCCTG-TAAGGTA
* **
187857663 AAATTACCAAAAATACCCTTGGT-TTGTA
1 AAATTACC-AAAATACCCCT-GTAAGGTA
**
187857691 AAATTACCAAAATACCCCTAGT-TTGTA
1 AAATTACCAAAATACCCCT-GTAAGGTA
* **
187857718 AAATTACTAAAATACCCCTTGT-TTGTA
1 AAATTACCAAAATACCCC-TGTAAGGTA
** *
187857745 AAATTACCAAAATACCCCTTGTTTGCT-
1 AAATTACCAAAATACCCC-TGTAAGGTA
*
187857772 AAATTACCAAAAT-CCCCTAGT-TGGTA
1 AAATTACCAAAATACCCCT-GTAAGGTA
* *
187857798 AAATTACCAAAATACCCC--TAATTTGTG
1 AAATTACCAAAATACCCCTGTAA--GGTA
*
187857825 AAATTACCAAAATA-CCCTCGATTA-GTA
1 AAATTACCAAAATACCCCT-G-TAAGGTA
**
187857852 AAATTACCAAAATACCCCTAGT-TTGTA
1 AAATTACCAAAATACCCCT-GTAAGGTA
**
187857879 AAATTACCAAAATACCCCTG-ATTTGTA
1 AAATTACCAAAATACCCCTGTA-AGGTA
*
187857906 AAATTACTAAAATACCCCTGTAAGGTA
1 AAATTACCAAAATACCCCTGTAAGGTA
* * * * * *
187857933 GAATTAACGAAATACCCTTATAGGGTA
1 AAATTACCAAAATACCCCTGTAAGGTA
* ** *
187857960 GAATTACTGAAATACCCCTATAAGGTA
1 AAATTACCAAAATACCCCTGTAAGGTA
** *
187857987 GAAA-TACTGAAATACCCCTATAAGGTA
1 -AAATTACCAAAATACCCCTGTAAGGTA
* ** *
187858014 GAATTACTGAAATACCCCTATAAGGTA
1 AAATTACCAAAATACCCCTGTAAGGTA
*
187858041 GAATTAC
1 AAATTAC
187858048 TGAGATACCC
Statistics
Matches: 352, Mismatches: 36, Indels: 46
0.81 0.08 0.11
Matches are distributed among these distances:
24 1 0.00
25 4 0.01
26 48 0.14
27 265 0.75
28 31 0.09
29 1 0.00
30 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGTAAGGTA
Found at i:187857938 original size:54 final size:54
Alignment explanation
Indices: 187857611--187858047 Score: 281
Period size: 54 Copynumber: 8.1 Consensus size: 54
187857601 TAGTTTACCA
* * * * * * * *
187857611 AATTACCAAAATACCCCCGATTAGCAAAATTACC-AAATGCCCTTGATTA-GCAA
1 AATTACCAAAATACCCCTGATTGGTAAAATTACCAAAATACCCCTG-TAAGGTAG
* * * ** *
187857664 AATTACCAAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACC-AAAATACCCCTGATTGGTAAAATTACCAAAATACCCCT-GTAAGGTAG
* * ** *
187857719 AATTACTAAAATACCCCTTG-TTTGTAAAATTACCAAAATACCCCTTGTTTGCTA-
1 AATTACCAAAATACCCC-TGATTGGTAAAATTACCAAAATACCCC-TGTAAGGTAG
*
187857773 AATTACCAAAAT-CCCCT-AGTTGGTAAAATTACCAAAATACCCC--TAATTTGT-G
1 AATTACCAAAATACCCCTGA-TTGGTAAAATTACCAAAATACCCCTGTAA--GGTAG
* ** *
187857825 AAATTACCAAAATA-CCCTCGATTAGTAAAATTACCAAAATACCCCTAGT-TTGTAA
1 -AATTACCAAAATACCCCT-GATTGGTAAAATTACCAAAATACCCCT-GTAAGGTAG
* *
187857880 AATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCCTGTAAGGTAG
1 AATTACCAAAATACCCCTGATTGGTAAAATTACCAAAATACCCCTGTAAGGTAG
* * * * * ** *
187857934 AATTAACGAAATA-CCCTTATAGGGTAGAATTACTGAAATACCCCTATAAGGTAG
1 AATTACCAAAATACCCCTGAT-TGGTAAAATTACCAAAATACCCCTGTAAGGTAG
* ** * * ** *
187857988 AAATACTGAAATACCCCT-ATAAGGTAGAATTACTGAAATACCCCTATAAGGTAG
1 AATTACCAAAATACCCCTGAT-TGGTAAAATTACCAAAATACCCCTGTAAGGTAG
187858042 AATTAC
1 AATTAC
187858048 TGAGATACCC
Statistics
Matches: 320, Mismatches: 40, Indels: 47
0.79 0.10 0.12
Matches are distributed among these distances:
50 1 0.00
52 2 0.01
53 58 0.18
54 224 0.70
55 33 0.10
56 1 0.00
57 1 0.00
ACGTcount: A:0.41, C:0.21, G:0.11, T:0.28
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGATTGGTAAAATTACCAAAATACCCCTGTAAGGTAG
Found at i:187857938 original size:81 final size:81
Alignment explanation
Indices: 187857610--187858033 Score: 357
Period size: 81 Copynumber: 5.2 Consensus size: 81
187857600 TTAGTTTACC
* * * * * * *
187857610 AAATTACCAAAATACCCC-CGATTAGCAAAATTACC-AAATGCCCTTGATTAGCAAAATTACCAA
1 AAATTACCAAAATACCCCTAG-TTGGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACC-A
* **
187857673 AAATACCCTTGGT-TTGTA
64 AAATACCCCT-GTAAGGTA
* *
187857691 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTTG-TTTGTAAAATTACCAA
1 AAATTACCAAAATACCCCTAGTTGGTAAAATTACCAAAATACCCC-TGATTTGTAAAATTACCAA
** *
187857755 AATACCCCTTGTTTGCT-
65 AATACCCC-TGTAAGGTA
* *
187857772 AAATTACCAAAAT-CCCCTAGTTGGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTGGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAA
*
187857836 ATA-CCCTCGATTA-GTA
66 ATACCCCT-G-TAAGGTA
* *
187857852 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTAGTTGGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAA
187857917 ATACCCCTGTAAGGTA
66 ATACCCCTGTAAGGTA
* * * * * * ** ** *
187857933 GAATTAACGAAATACCCTTA-TAGGGTAGAATTACTGAAATACCCCT-ATAAGGTAGAAA-TACT
1 AAATTACCAAAATACCCCTAGT-TGGTAAAATTACCAAAATACCCCTGAT-TTGTA-AAATTACC
* *
187857995 GAAATACCCCTATAAGGTA
63 AAAATACCCCTGTAAGGTA
* **
187858014 GAATTACTGAAATACCCCTA
1 AAATTACCAAAATACCCCTA
187858034 TAAGGTAGAA
Statistics
Matches: 290, Mismatches: 38, Indels: 30
0.81 0.11 0.08
Matches are distributed among these distances:
78 1 0.00
79 6 0.02
80 68 0.23
81 183 0.63
82 30 0.10
83 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAGTTGGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAA
ATACCCCTGTAAGGTA
Found at i:187858067 original size:27 final size:27
Alignment explanation
Indices: 187857907--187858057 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
187857897 TGATTTGTAA
* *
187857907 AATTACTAAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTATAAGGTAG
* *
187857934 AATTAAC-GAAATACCCTTATAGGGTAG
1 AATT-ACTGAAATACCCCTATAAGGTAG
187857961 AATTACTGAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTATAAGGTAG
*
187857988 AAATACTGAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTATAAGGTAG
187858015 AATTACTGAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTATAAGGTAG
*
187858042 AATTACTGAGATACCC
1 AATTACTGAAATACCC
187858058 TCGTGGGGTA
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
26 2 0.02
27 109 0.96
28 2 0.02
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (27 bp):
AATTACTGAAATACCCCTATAAGGTAG
Found at i:187858073 original size:54 final size:54
Alignment explanation
Indices: 187857903--187858074 Score: 222
Period size: 54 Copynumber: 3.2 Consensus size: 54
187857893 CCCCTGATTT
* * *
187857903 GTAAAATTACTAAAATACCCCTGTAAGGTAGAATTAAC-GAAATACCCTTATAGG
1 GTAAAATTACTGAAATACCCCTATAAGGTAGAATT-ACTGAAATACCCTCATAGG
* * *
187857957 GTAGAATTACTGAAATACCCCTATAAGGTAGAAATACTGAAATACCC-CTATAAG
1 GTAAAATTACTGAAATACCCCTATAAGGTAGAATTACTGAAATACCCTC-ATAGG
* * * *
187858011 GTAGAATTACTGAAATACCCCTATAAGGTAGAATTACTGAGATACCCTCGTGGG
1 GTAAAATTACTGAAATACCCCTATAAGGTAGAATTACTGAAATACCCTCATAGG
187858065 GTAAAATTAC
1 GTAAAATTAC
187858075 CATTTTTCCC
Statistics
Matches: 103, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
53 2 0.02
54 100 0.97
55 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (54 bp):
GTAAAATTACTGAAATACCCCTATAAGGTAGAATTACTGAAATACCCTCATAGG
Found at i:187858729 original size:27 final size:26
Alignment explanation
Indices: 187858691--187858742 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
187858681 CTCGCTGCAA
*
187858691 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
*
187858718 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
187858743 CTAGCCTCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:187862849 original size:29 final size:29
Alignment explanation
Indices: 187862784--187862882 Score: 157
Period size: 28 Copynumber: 3.5 Consensus size: 29
187862774 AATGAGATTG
*
187862784 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATAGTATA
*
187862812 GCACTAAGTGTGTGAGTTTGAATAGTATA
1 GCACTAAGTGTGCGAGTTTGAATAGTATA
*
187862841 GCACTAAGTGTGCGAGTTTGAATATTA-A
1 GCACTAAGTGTGCGAGTTTGAATAGTATA
187862869 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
187862883 GACTTACTGT
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
28 33 0.50
29 33 0.50
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.32
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATAGTATA
Found at i:187864948 original size:40 final size:39
Alignment explanation
Indices: 187864884--187865070 Score: 223
Period size: 39 Copynumber: 4.8 Consensus size: 39
187864874 GCTACTCGTT
* * * ** *
187864884 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
187864924 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
*
187864964 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * * *
187865003 C-ATTGCCTTCGGGCTTAGCCCGGATATCACAATTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
*
187865041 CAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCA
187865071 CTCGCACATT
Statistics
Matches: 132, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 35 0.27
39 52 0.39
40 45 0.34
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:187864999 original size:39 final size:39
Alignment explanation
Indices: 187864920--187865071 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
187864910 TATGGTAACC
* *
187864920 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
187864960 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
187864999 CGCAC-ATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
187865037 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
187865072 TCGCACATTC
Statistics
Matches: 105, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
38 35 0.33
39 53 0.50
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:187865034 original size:77 final size:79
Alignment explanation
Indices: 187864889--187865070 Score: 260
Period size: 77 Copynumber: 2.3 Consensus size: 79
187864879 TCGTTCAAAC
* * **
187864889 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
187864954 ACAACTCGCACAATT
65 ACAACTCGCACAATT
* * *
187864969 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCAC-ATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
* *
187865032 CAATTTGCACAATT
66 CAACTCGCACAATT
187865046 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
187865071 CTCGCACATT
Statistics
Matches: 93, Mismatches: 9, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
77 52 0.56
78 11 0.12
79 21 0.23
80 9 0.10
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
CAACTCGCACAATT
Found at i:187872077 original size:80 final size:80
Alignment explanation
Indices: 187871993--187872141 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
187871983 TATGGTAACC
* * * *
187871993 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
187872057 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
187872073 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
187872138 CCGG
66 CCGG
187872142 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:187872083 original size:40 final size:38
Alignment explanation
Indices: 187872034--187872141 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
187872024 ATCACGATTT
*
187872034 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
187872074 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
187872114 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
187872142 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:187875887 original size:40 final size:39
Alignment explanation
Indices: 187875843--187876024 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
187875833 CGTTCAAAAC
* * ** * *
187875843 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* *
187875883 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
187875923 GCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
* * *
187875962 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
187876001 GCCTTCGGGCTTAG-CCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
187876025 CTCGACATTC
Statistics
Matches: 127, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
38 10 0.08
39 76 0.60
40 41 0.32
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:187875955 original size:39 final size:39
Alignment explanation
Indices: 187875874--187876025 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
187875864 TATGGTAACC
* *
187875874 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
187875914 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
187875953 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
187875992 TGCACAATTGCCTTCGGGCTTAG-CCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
187876026 TCGACATTCA
Statistics
Matches: 104, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 11 0.11
39 76 0.73
40 17 0.16
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:187881140 original size:20 final size:22
Alignment explanation
Indices: 187881115--187881159 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
187881105 CGGATTTAAC
187881115 GAATGCCTTC-G-CTTAGCCCG
1 GAATGCCTTCGGTCTTAGCCCG
187881135 GAATGCCTTCGGGTCTTAGCCCG
1 GAATGCCTTC-GGTCTTAGCCCG
187881158 GA
1 GA
187881160 TATAGCACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 10 0.45
22 1 0.05
23 11 0.50
ACGTcount: A:0.16, C:0.31, G:0.29, T:0.24
Consensus pattern (22 bp):
GAATGCCTTCGGTCTTAGCCCG
Found at i:187881237 original size:40 final size:39
Alignment explanation
Indices: 187881138--187881241 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 39
187881128 TAGCCCGGAA
*
187881138 TGCCTTCGGGTCTTAGCCCGGATATAGCACTAGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAGAACTAGCACAAT
* * *
187881177 TGCCTTCGGGTCTTAACCCGGATATA-AATTTCAGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAGAA-CT-AGCACAAT
* *
187881217 TGTCTTCGGGGCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
187881242 CATTCAATTT
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
38 1 0.02
39 26 0.46
40 29 0.52
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (39 bp):
TGCCTTCGGGTCTTAGCCCGGATATAGAACTAGCACAAT
Found at i:187889151 original size:40 final size:40
Alignment explanation
Indices: 187889092--187889260 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
187889082 CGGGACTTTA
* * *
187889092 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
187889132 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
187889172 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
187889212 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
187889252 CCCGGATAT
1 CCCGGATAT
187889261 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:187890107 original size:17 final size:19
Alignment explanation
Indices: 187890084--187890129 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
187890074 AAGAAGCATG
187890084 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
187890102 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
187890120 AATCATGCTC
1 AATCATGCTC
187890130 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:187896194 original size:8 final size:8
Alignment explanation
Indices: 187896181--187896213 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
187896171 AAATTAGCCC
187896181 TCACATTT
1 TCACATTT
187896189 TCACATTT
1 TCACATTT
187896197 TCACATTT
1 TCACATTT
*
187896205 TAACATTT
1 TCACATTT
187896213 T
1 T
187896214 AGTCCCTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.27, C:0.21, G:0.00, T:0.52
Consensus pattern (8 bp):
TCACATTT
Found at i:187912456 original size:28 final size:28
Alignment explanation
Indices: 187912380--187912460 Score: 99
Period size: 29 Copynumber: 2.9 Consensus size: 28
187912370 CATGATTATG
* * *
187912380 AATATGACTGGGCCTAACGGGCTATATA
1 AATATGATTGGGCCTAATGGGCCATATA
* *
187912408 AATTTGATTTGGGCCTAATGGGCCATATC
1 AATATGA-TTGGGCCTAATGGGCCATATA
*
187912437 AATATGATTGGGCTTAATGGGCCA
1 AATATGATTGGGCCTAATGGGCCA
187912461 GATACAGGTA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 22 0.49
29 23 0.51
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (28 bp):
AATATGATTGGGCCTAATGGGCCATATA
Found at i:187918030 original size:40 final size:40
Alignment explanation
Indices: 187917975--187918226 Score: 351
Period size: 40 Copynumber: 6.5 Consensus size: 40
187917965 CGGATGATAA
* *
187917975 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
187918015 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
187918055 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
187918095 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
187918135 CCGGGCTAAGT-CC-AAGACATTTGTGCGA---ACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
187918170 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
187918209 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
187918227 TACTTGGTTT
Statistics
Matches: 199, Mismatches: 8, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
35 18 0.09
36 2 0.01
37 13 0.07
38 28 0.14
39 10 0.05
40 127 0.64
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:187926050 original size:40 final size:40
Alignment explanation
Indices: 187925999--187926242 Score: 361
Period size: 40 Copynumber: 6.1 Consensus size: 40
187925989 GGATGATAAT
*
187925999 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
*
187926038 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
*
187926078 TTCC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
*
187926118 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
* *
187926158 TCCGGGCTAAGTCCCGAAGACATTTGTGCGAACT-ACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTATA
* *
187926198 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
187926238 TCCGG
1 TCCGG
187926243 TTAAAGCCCG
Statistics
Matches: 192, Mismatches: 8, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
39 37 0.19
40 153 0.80
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
Found at i:187929348 original size:40 final size:40
Alignment explanation
Indices: 187929304--187929488 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
187929294 GCTACTCGTT
* *
187929304 CAAATGCCTTTGGGACATAGCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
187929344 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
187929384 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
187929423 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
187929464 CAAA-GCCTTCGGGCCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
187929489 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 76 0.61
41 14 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:187929415 original size:79 final size:81
Alignment explanation
Indices: 187929306--187929488 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
187929296 TACTCGTTCA
* * *
187929306 AATGCCTTTGGGACATAGCCC-GATTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
187929369 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
187929386 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
187929449 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
* *
187929465 AAAGCCTTCGGGCCTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
187929489 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.64
80 29 0.33
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:187932523 original size:9 final size:9
Alignment explanation
Indices: 187932505--187932744 Score: 176
Period size: 9 Copynumber: 27.6 Consensus size: 9
187932495 TATTTATGTA
187932505 TTATGTAAG
1 TTATGTAAG
*
187932514 TTAAGTAAG
1 TTATGTAAG
*
187932523 TTTTGTAAG
1 TTATGTAAG
187932532 TTATGTAAG
1 TTATGTAAG
* *
187932541 ATATGATATG
1 TTATG-TAAG
* * *
187932551 ATATAT-AT
1 TTATGTAAG
*
187932559 TTATGTAAC
1 TTATGTAAG
187932568 TTATGTAAG
1 TTATGTAAG
* *
187932577 TTATAT-AT
1 TTATGTAAG
* *
187932585 TTATCTAAA
1 TTATGTAAG
*
187932594 TTATATAAG
1 TTATGTAAG
187932603 TTATGTAAG
1 TTATGTAAG
187932612 TTATGTAAG
1 TTATGTAAG
*
187932621 TTATGATATG
1 TTATG-TAAG
* *
187932631 ATATAT-A-
1 TTATGTAAG
187932638 TTA--TAAG
1 TTATGTAAG
187932645 TTATGTAAG
1 TTATGTAAG
* *
187932654 TTATAT-AT
1 TTATGTAAG
*
187932662 TTATCTAAG
1 TTATGTAAG
187932671 TTATGTAAG
1 TTATGTAAG
187932680 TTATGTAAG
1 TTATGTAAG
*
187932689 TTATGTAAA
1 TTATGTAAG
*
187932698 TTA--T-AT
1 TTATGTAAG
*
187932704 TTATATAAG
1 TTATGTAAG
*
187932713 TTATATAAG
1 TTATGTAAG
*
187932722 TTATGTAAA
1 TTATGTAAG
187932731 TTATGTAAG
1 TTATGTAAG
187932740 TTATG
1 TTATG
187932745 ATATGATATA
Statistics
Matches: 183, Mismatches: 36, Indels: 24
0.75 0.15 0.10
Matches are distributed among these distances:
5 1 0.01
6 5 0.03
7 6 0.03
8 17 0.09
9 141 0.77
10 13 0.07
ACGTcount: A:0.38, C:0.01, G:0.15, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:187932650 original size:33 final size:32
Alignment explanation
Indices: 187932608--187932726 Score: 116
Period size: 33 Copynumber: 3.6 Consensus size: 32
187932598 ATAAGTTATG
187932608 TAAGTTATGTAAGTTATGATATGATATATATTA
1 TAAGTTATGTAAGTTATGATAT-ATATATATTA
* *
187932641 TAAGTTATGTAAGTTAT-ATATTTATCTAAGTTA
1 TAAGTTATGTAAGTTATGATATATATAT-A-TTA
* *
187932674 TGTAAGTTATGTAAGTTATG-TAAATTATATTTATA
1 --TAAGTTATGTAAGTTATGATATA-TATATAT-TA
*
187932709 TAAGTTATATAAGTTATG
1 TAAGTTATGTAAGTTATG
187932727 TAAATTATGT
Statistics
Matches: 72, Mismatches: 7, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
31 4 0.06
32 5 0.07
33 37 0.51
34 1 0.01
35 21 0.29
36 4 0.06
ACGTcount: A:0.38, C:0.01, G:0.14, T:0.47
Consensus pattern (32 bp):
TAAGTTATGTAAGTTATGATATATATATATTA
Found at i:187932656 original size:42 final size:41
Alignment explanation
Indices: 187932519--187932758 Score: 177
Period size: 42 Copynumber: 6.0 Consensus size: 41
187932509 GTAAGTTAAG
*
187932519 TAAGTTTTGTAAGTTATGTAAG----ATATGATATGATA-TA
1 TAAGTTATGTAAGTTATGTAAGTTATATATGATAT-ATATTA
* * * * *
187932556 T-ATTTATGTAACTTATGTAAGTTATATATTTATCTAAATTATA
1 TAAGTTATGTAAGTTATGTAAGTTATATA-TGATATATA-T-TA
187932599 TAAGTTATGTAAGTTATGTAAGTTATGATATGATATATATTA
1 TAAGTTATGTAAGTTATGTAAGTTAT-ATATGATATATATTA
* * *
187932641 TAAGTTATGTAAGTTATAT-A-TT-TATCT-A-AGT-TA-TG
1 TAAGTTATGTAAGTTATGTAAGTTATATATGATA-TATATTA
* *
187932676 TAAGTTATGTAAGTTATGTAAATTATAT-TTATATA-AGTTATA
1 TAAGTTATGTAAGTTATGTAAGTTATATATGATATATA--T-TA
*
187932718 TAAGTTATGTAAATTATGTAAGTTATGATATGATATATATT
1 TAAGTTATGTAAGTTATGTAAGTTAT-ATATGATATATATT
187932759 TAACATTAAG
Statistics
Matches: 160, Mismatches: 19, Indels: 43
0.72 0.09 0.19
Matches are distributed among these distances:
35 19 0.12
36 21 0.13
37 6 0.04
38 9 0.06
39 2 0.01
40 7 0.04
41 5 0.03
42 46 0.29
43 7 0.04
44 34 0.21
45 4 0.03
ACGTcount: A:0.38, C:0.01, G:0.14, T:0.47
Consensus pattern (41 bp):
TAAGTTATGTAAGTTATGTAAGTTATATATGATATATATTA
Found at i:187932684 original size:77 final size:78
Alignment explanation
Indices: 187932505--187932734 Score: 306
Period size: 77 Copynumber: 2.9 Consensus size: 78
187932495 TATTTATGTA
* * * * *
187932505 TTATGTAAGTTAAGTAAGTTTTGTAAGTTATGTAAGATATGATATGATATATATTTATGTAACTT
1 TTATCTAAGTTATGTAAGTTATGTAAGTTATGTAAGTTATGATATGATATATATTTA--TAAGTT
187932570 ATGTAAGTTATATAT
64 ATGTAAGTTATATAT
* *
187932585 TTATCTAAATTATATAAGTTATGTAAGTTATGTAAGTTATGATATGATATATA-TTATAAGTTAT
1 TTATCTAAGTTATGTAAGTTATGTAAGTTATGTAAGTTATGATATGATATATATTTATAAGTTAT
187932649 GTAAGTTATATAT
66 GTAAGTTATATAT
* *
187932662 TTATCTAAGTTATGTAAGTTATGTAAGTTATGTAAATTAT-AT-TTATATA-AGTTATATAAGTT
1 TTATCTAAGTTATGTAAGTTATGTAAGTTATGTAAGTTATGATATGATATATA-TT-TATAAGTT
*
187932724 ATGTAAATTAT
64 ATGTAAGTTAT
187932735 GTAAGTTATG
Statistics
Matches: 135, Mismatches: 12, Indels: 9
0.87 0.08 0.06
Matches are distributed among these distances:
74 1 0.01
75 6 0.04
76 3 0.02
77 75 0.56
79 3 0.02
80 47 0.35
ACGTcount: A:0.38, C:0.01, G:0.14, T:0.47
Consensus pattern (78 bp):
TTATCTAAGTTATGTAAGTTATGTAAGTTATGTAAGTTATGATATGATATATATTTATAAGTTAT
GTAAGTTATATAT
Found at i:187932712 original size:24 final size:24
Alignment explanation
Indices: 187932680--187932725 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
187932670 GTTATGTAAG
* *
187932680 TTATGTAAGTTATGTAAATTATAT
1 TTATATAAGTTATATAAATTATAT
*
187932704 TTATATAAGTTATATAAGTTAT
1 TTATATAAGTTATATAAATTAT
187932726 GTAAATTATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (24 bp):
TTATATAAGTTATATAAATTATAT
Found at i:187932886 original size:19 final size:19
Alignment explanation
Indices: 187932864--187932904 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
187932854 TATATTGATA
* *
187932864 AAAAATATTTATAAATTTT
1 AAAAATATTTAAAAATATT
187932883 AAAAATATTTAAAAATATT
1 AAAAATATTTAAAAATATT
187932902 AAA
1 AAA
187932905 TATTAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAAATATTTAAAAATATT
Found at i:187932893 original size:10 final size:10
Alignment explanation
Indices: 187932864--187932901 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
187932854 TATATTGATA
187932864 AAAAATATTT
1 AAAAATATTT
*
187932874 ATAAAT-TTT
1 AAAAATATTT
187932883 AAAAATATTT
1 AAAAATATTT
187932893 AAAAATATT
1 AAAAATATT
187932902 AAATATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 8 0.32
10 17 0.68
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
AAAAATATTT
Found at i:187932920 original size:22 final size:22
Alignment explanation
Indices: 187932893--187932934 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
187932883 AAAAATATTT
*
187932893 AAAAA-TATTAAATATTAAAATA
1 AAAAATTATT-AATATGAAAATA
187932915 AAAAATTATTAATATGAAAA
1 AAAAATTATTAATATGAAAA
187932935 ATTAATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAAATTATTAATATGAAAATA
Found at i:187932924 original size:16 final size:16
Alignment explanation
Indices: 187932905--187932943 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
187932895 AAATATTAAA
187932905 TATTAAAATAAAAAAT
1 TATTAAAATAAAAAAT
* *
187932921 TATTAATATGAAAAAT
1 TATTAAAATAAAAAAT
*
187932937 TAATAAA
1 TATTAAA
187932944 TATGATATAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (16 bp):
TATTAAAATAAAAAAT
Found at i:187932935 original size:23 final size:22
Alignment explanation
Indices: 187932893--187932946 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
187932883 AAAAATATTT
*
187932893 AAAAATATTAAATATTAAAATA
1 AAAAATATTAAATATAAAAATA
187932915 AAAAATTATT-AATATGAAAAATTA
1 AAAAA-TATTAAATAT-AAAAA-TA
*
187932939 ATAAATAT
1 AAAAATAT
187932947 GATATACTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 10 0.37
23 11 0.41
24 6 0.22
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAAATATTAAATATAAAAATA
Found at i:187932945 original size:17 final size:16
Alignment explanation
Indices: 187932895--187932948 Score: 51
Period size: 17 Copynumber: 3.5 Consensus size: 16
187932885 AAATATTTAA
* *
187932895 AAATATTAAATATTA-
1 AAATATGAAAAATTAT
187932910 AAATA--AAAAATTAT
1 AAATATGAAAAATTAT
*
187932924 TAATATGAAAAATTAAT
1 AAATATGAAAAATT-AT
187932941 AAATATGA
1 AAATATGA
187932949 TATACTATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
13 7 0.22
14 4 0.12
15 5 0.16
16 7 0.22
17 9 0.28
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (16 bp):
AAATATGAAAAATTAT
Found at i:187933469 original size:26 final size:23
Alignment explanation
Indices: 187933443--187933488 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
187933433 CTTTTTTATT
*
187933443 ATTATCAAATGAATTTTCTTAAC
1 ATTATCAAATAAATTTTCTTAAC
187933466 ATTATCAAATAAATTTTCTTAAC
1 ATTATCAAATAAATTTTCTTAAC
187933489 CAAATACTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.41, C:0.13, G:0.02, T:0.43
Consensus pattern (23 bp):
ATTATCAAATAAATTTTCTTAAC
Found at i:187933637 original size:2 final size:2
Alignment explanation
Indices: 187933630--187933662 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
187933620 GCATGTTTGT
187933630 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
187933663 ATATATATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:187934198 original size:25 final size:25
Alignment explanation
Indices: 187934170--187934232 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 25
187934160 AGAAGCAGCA
* *
187934170 AGGGGTGCCGACGGAGATGTAGTAG
1 AGGGATGCCGACGGAAATGTAGTAG
*
187934195 AGGGATGCCGATGGAAATGTAGTAG
1 AGGGATGCCGACGGAAATGTAGTAG
187934220 A-GGACTGCCGACG
1 AGGGA-TGCCGACG
187934233 ACGATGCCGA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 3 0.09
25 30 0.91
ACGTcount: A:0.27, C:0.14, G:0.43, T:0.16
Consensus pattern (25 bp):
AGGGATGCCGACGGAAATGTAGTAG
Found at i:187934247 original size:22 final size:22
Alignment explanation
Indices: 187934219--187934261 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
187934209 AAATGTAGTA
* *
187934219 GAGGACTGCCGACGACGATGCC
1 GAGGACTACCGAAGACGATGCC
*
187934241 GAGGACTACCGAAGGCGATGC
1 GAGGACTACCGAAGACGATGC
187934262 AGCAGACGTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.28, G:0.37, T:0.09
Consensus pattern (22 bp):
GAGGACTACCGAAGACGATGCC
Found at i:187934362 original size:14 final size:14
Alignment explanation
Indices: 187934343--187934387 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
187934333 AACAACCCAA
187934343 GATATATGCATATT
1 GATATATGCATATT
187934357 GATATATG--TA-T
1 GATATATGCATATT
*
187934368 -ATATAAGCATATT
1 GATATATGCATATT
187934381 GATATAT
1 GATATAT
187934388 ATATATATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
10 6 0.24
11 1 0.04
12 4 0.16
13 1 0.04
14 13 0.52
ACGTcount: A:0.40, C:0.04, G:0.13, T:0.42
Consensus pattern (14 bp):
GATATATGCATATT
Found at i:187934377 original size:24 final size:24
Alignment explanation
Indices: 187934344--187934396 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
187934334 ACAACCCAAG
* *
187934344 ATATATGCATATTGATATATGTAT
1 ATATAAGCATATTGATATATATAT
187934368 ATATAAGCATATTGATATATATAT
1 ATATAAGCATATTGATATATATAT
187934392 ATATA
1 ATATA
187934397 CATTACAATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.43
Consensus pattern (24 bp):
ATATAAGCATATTGATATATATAT
Found at i:187937564 original size:47 final size:46
Alignment explanation
Indices: 187937507--187937598 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
187937497 AACATCAGGA
187937507 AAAGGAAAAAAAGTTTAGAAAAAAAAAAAGAAAAACCCAAATGATT
1 AAAGGAAAAAAAGTTTAGAAAAAAAAAAAGAAAAACCCAAATGATT
*
187937553 AAAGGAAAAAAAGTTTAGAAAAAAGAAAAGAAAAACCCAAATGATT
1 AAAGGAAAAAAAGTTTAGAAAAAAAAAAAGAAAAACCCAAATGATT
187937599 TAACATGCAG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.13
Consensus pattern (46 bp):
AAAGGAAAAAAAGTTTAGAAAAAAAAAAAGAAAAACCCAAATGATT
Found at i:187939138 original size:22 final size:22
Alignment explanation
Indices: 187939096--187939155 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
187939086 TTTAATCAAT
187939096 TAACCCTT-AAACCCTATACAC
1 TAACCCTTAAAACCCTATACAC
*
187939117 TAACCCTTAAAACCTTGA-ACAC
1 TAACCCTTAAAACCCT-ATACAC
*
187939139 TAAGACCTT-AAACCCTA
1 TAA-CCCTTAAAACCCTA
187939156 AATACTTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
21 9 0.27
22 19 0.58
23 5 0.15
ACGTcount: A:0.40, C:0.33, G:0.03, T:0.23
Consensus pattern (22 bp):
TAACCCTTAAAACCCTATACAC
Found at i:187939473 original size:7 final size:7
Alignment explanation
Indices: 187939456--187939554 Score: 54
Period size: 7 Copynumber: 13.7 Consensus size: 7
187939446 ATATTATTTT
187939456 TTTAGGGG
1 TTTA-GGG
187939464 TTTAGGG
1 TTTAGGG
*
187939471 TTTTAGAG
1 -TTTAGGG
*
187939479 TTTATGG
1 TTTAGGG
* *
187939486 ATTAGTG
1 TTTAGGG
187939493 TTTAGGG
1 TTTAGGG
***
187939500 TTTATAT
1 TTTAGGG
***
187939507 TTTAAAA
1 TTTAGGG
187939514 TTTAGGG
1 TTTAGGG
187939521 TTTAGGG
1 TTTAGGG
**
187939528 TTTAATG
1 TTTAGGG
*
187939535 TTTAGGA
1 TTTAGGG
187939542 TTTAAGGG
1 TTT-AGGG
187939550 TTTAG
1 TTTAG
187939555 AGAAAGCCAT
Statistics
Matches: 67, Mismatches: 22, Indels: 5
0.71 0.23 0.05
Matches are distributed among these distances:
7 51 0.76
8 16 0.24
ACGTcount: A:0.23, C:0.00, G:0.29, T:0.47
Consensus pattern (7 bp):
TTTAGGG
Found at i:187941012 original size:20 final size:20
Alignment explanation
Indices: 187940927--187941003 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
187940917 TGCTTGTTGT
* *
187940927 TTTAAATTGATTCTTTGCTTA
1 TTTAAATTGATTCTTT-ATTG
* *
187940948 TTTGAATTGATTGTTTATTG
1 TTTAAATTGATTCTTTATTG
** * *
187940968 TTTGGATCGATTCATTATTG
1 TTTAAATTGATTCTTTATTG
187940988 TTTAAATTGATTCTTT
1 TTTAAATTGATTCTTT
187941004 GTTGGTTAAC
Statistics
Matches: 44, Mismatches: 12, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
20 30 0.68
21 14 0.32
ACGTcount: A:0.22, C:0.06, G:0.14, T:0.57
Consensus pattern (20 bp):
TTTAAATTGATTCTTTATTG
Found at i:187942634 original size:40 final size:39
Alignment explanation
Indices: 187942589--187942718 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
187942579 CGGAATATAA
187942589 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
187942629 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
187942669 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
187942709 CCGGATATAA
1 CCGGATATAA
187942719 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:187942733 original size:40 final size:40
Alignment explanation
Indices: 187942605--187942756 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
187942595 ATAACCATGT
* * *
187942605 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
187942645 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
187942685 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
187942725 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
187942757 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:187942739 original size:80 final size:80
Alignment explanation
Indices: 187942605--187942754 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
187942595 ATAACCATGT
*
187942605 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
187942669 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
187942685 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
187942748 CCCGGAT
64 CCCGGAT
187942755 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:187950618 original size:40 final size:39
Alignment explanation
Indices: 187950573--187950702 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
187950563 CGGAATATAA
187950573 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
187950613 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
187950653 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
187950693 CCGGATATAA
1 CCGGATATAA
187950703 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:187950717 original size:40 final size:40
Alignment explanation
Indices: 187950589--187950739 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
187950579 ATAACCATGT
* * *
187950589 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
187950629 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
187950669 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
187950709 GCATAATTGTCTTCGGG-ATTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
187950740 CATTCAATTT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 14 0.16
40 74 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:187950723 original size:80 final size:79
Alignment explanation
Indices: 187950589--187950737 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
187950579 ATAACCATGT
* *
187950589 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-ATTAGCC
187950654 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
187950669 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTAGC
187950732 CCGGAT
64 CCGGAT
187950738 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 14 0.23
80 46 0.77
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTAGCCC
GGATGTAGCCACTA
Found at i:187956660 original size:40 final size:40
Alignment explanation
Indices: 187956533--187956662 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
187956523 ATGCTGGAAA
* * * *
187956533 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTAG
* * *
187956573 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA-
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-AG
*
187956613 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTAG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTAG
187956653 TTATATCCGG
1 TTATATCCGG
187956663 TTATATTCCG
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
39 2 0.03
40 73 0.97
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTAG
Found at i:187958301 original size:39 final size:39
Alignment explanation
Indices: 187958191--187958384 Score: 280
Period size: 39 Copynumber: 4.9 Consensus size: 39
187958181 TCGTTCAAAC
* * * * * *
187958191 GCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATT
*
187958231 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATT
* *
187958271 GCCTTTGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
187958310 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
*
187958349 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
187958385 TTCATACACA
Statistics
Matches: 141, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 100 0.71
40 41 0.29
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
Found at i:187962091 original size:23 final size:21
Alignment explanation
Indices: 187962058--187962103 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
187962048 TCATGCTTAT
*
187962058 AATCATATCAAAATCATGCCA
1 AATCATATCAAAATCATACCA
*
187962079 AATCATAATTCAAAGTCATACCA
1 AATCAT-A-TCAAAATCATACCA
187962102 AA
1 AA
187962104 ACGTAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
22 1 0.05
23 14 0.67
ACGTcount: A:0.50, C:0.22, G:0.04, T:0.24
Consensus pattern (21 bp):
AATCATATCAAAATCATACCA
Found at i:187969683 original size:63 final size:63
Alignment explanation
Indices: 187969603--187969784 Score: 195
Period size: 66 Copynumber: 2.9 Consensus size: 63
187969593 AGACATTATG
*
187969603 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * * *
187969666 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
187969731 A
63 A
** * * * * * *
187969732 AACTGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTATACAA-AGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGC
187969785 CGAACTATAT
Statistics
Matches: 96, Mismatches: 20, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
62 5 0.05
63 34 0.35
64 5 0.05
65 6 0.06
66 46 0.48
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:187970869 original size:2 final size:2
Alignment explanation
Indices: 187970862--187970892 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
187970852 TCATGACATG
187970862 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
187970893 GACTAGTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:187973290 original size:23 final size:21
Alignment explanation
Indices: 187973257--187973302 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
187973247 TCATGCTTAT
*
187973257 AATCATATCAAAATCATGCCA
1 AATCATATCAAAATCATACCA
*
187973278 AATCATAATTCAAAGTCATACCA
1 AATCAT-A-TCAAAATCATACCA
187973301 AA
1 AA
187973303 ACTTAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
22 1 0.05
23 14 0.67
ACGTcount: A:0.50, C:0.22, G:0.04, T:0.24
Consensus pattern (21 bp):
AATCATATCAAAATCATACCA
Found at i:187974199 original size:26 final size:26
Alignment explanation
Indices: 187974169--187974221 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
187974159 ACCATTATTA
187974169 AGTTTA-TATATTAT-TTCATTAAGGAT
1 AGTTTAGTA-ATTATGTT-ATTAAGGAT
*
187974195 AGTTTAGTAATTATGTTATTAATGAT
1 AGTTTAGTAATTATGTTATTAAGGAT
187974221 A
1 A
187974222 ATAAAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.36, C:0.02, G:0.13, T:0.49
Consensus pattern (26 bp):
AGTTTAGTAATTATGTTATTAAGGAT
Found at i:187975966 original size:29 final size:29
Alignment explanation
Indices: 187975934--187976036 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
187975924 ATGACGAGAT
* *
187975934 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
187975963 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
187975992 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
187976021 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
187976037 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:187978282 original size:40 final size:41
Alignment explanation
Indices: 187978216--187978326 Score: 104
Period size: 40 Copynumber: 2.8 Consensus size: 41
187978206 GACTATGTTT
** * *
187978216 GGCACTAAGTGTGC-ATTTCAAAATAGCTTCAGCTATAAAT-A
1 GGCACTAAGTGTGCGATACCGAGATAGCTTCAGCTAT--ATGA
* ** *
187978257 -GCACTAAGTGTGGGA-ATTGAGATAGCTTCGGCTATATGA
1 GGCACTAAGTGTGCGATACCGAGATAGCTTCAGCTATATGA
187978296 GGCACTAAGTGTGCGATACCGAGATAGCTTC
1 GGCACTAAGTGTGCGATACCGAGATAGCTTC
187978327 GGTTTATTGA
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
38 2 0.04
39 1 0.02
40 41 0.72
41 13 0.23
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (41 bp):
GGCACTAAGTGTGCGATACCGAGATAGCTTCAGCTATATGA
Found at i:187979593 original size:20 final size:21
Alignment explanation
Indices: 187979555--187979598 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
187979545 AGCATGAAAC
187979555 TGATTGATGATATTATGGA-T
1 TGATTGATGATATTATGGAGT
*
187979575 TGATTGAT-ATATCTTTGGAGT
1 TGATTGATGATAT-TATGGAGT
187979596 TGA
1 TGA
187979599 ATTTGGCTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 4 0.19
20 13 0.62
21 4 0.19
ACGTcount: A:0.27, C:0.02, G:0.25, T:0.45
Consensus pattern (21 bp):
TGATTGATGATATTATGGAGT
Found at i:187981085 original size:40 final size:40
Alignment explanation
Indices: 187981040--187981206 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
187981030 CGGAATATAA
187981040 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
187981080 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
187981120 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
187981160 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
187981199 CCGGATAT
1 CCGGATAT
187981207 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:187981190 original size:80 final size:79
Alignment explanation
Indices: 187981056--187981206 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
187981046 ATAATCACGT
*
187981056 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
187981121 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
187981136 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
187981199 CCGGATAT
64 CCGGATAT
187981207 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:187982055 original size:17 final size:19
Alignment explanation
Indices: 187982032--187982077 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
187982022 AAGAAGCATG
187982032 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
187982050 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
187982068 AATCATGCTC
1 AATCATGCTC
187982078 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:187991070 original size:29 final size:27
Alignment explanation
Indices: 187991036--187991138 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
187991026 TACTCGATCA
*
187991036 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
187991065 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
187991094 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
187991123 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
187991139 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:187999012 original size:29 final size:27
Alignment explanation
Indices: 187998978--187999080 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
187998968 TACTCGATCA
*
187998978 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
187999007 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
187999036 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
187999065 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
187999081 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:188006648 original size:40 final size:39
Alignment explanation
Indices: 188006604--188006784 Score: 229
Period size: 39 Copynumber: 4.6 Consensus size: 39
188006594 GTTCAAAACA
* * ** * *
188006604 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
188006644 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
188006684 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* * *
188006723 CCTTCGGGCTTAGCCC-GATATCACAATTCACACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
188006761 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
188006785 CTCGAACATT
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
38 34 0.27
39 51 0.41
40 40 0.32
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:188006757 original size:38 final size:39
Alignment explanation
Indices: 188006634--188006785 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
188006624 TATGGTAACC
* *
188006634 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
188006674 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
188006713 CGCACAATTGCCTTCGGGCTTAGCCC-GATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
188006751 CACACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
188006786 TCGAACATTC
Statistics
Matches: 103, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 34 0.33
39 52 0.50
40 17 0.17
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:188006767 original size:77 final size:79
Alignment explanation
Indices: 188006634--188006784 Score: 252
Period size: 77 Copynumber: 1.9 Consensus size: 79
188006624 TATGGTAACC
*
188006634 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCACACAATTGCCTTCGGGCTTAGCC
188006699 CGGATATCATAGCT
66 CGGATATCATAGCT
* * *
188006713 CGCACAATTGCCTTCGGG-CTTAGCCC-GATATCACAATTCACACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCACACAATTGCCTTCGGGCTTAGCC
188006776 CGGATATCA
66 CGGATATCA
188006785 CTCGAACATT
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
77 44 0.65
78 7 0.10
79 17 0.25
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.24
Consensus pattern (79 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCACACAATTGCCTTCGGGCTTAGCC
CGGATATCATAGCT
Found at i:188008541 original size:28 final size:26
Alignment explanation
Indices: 188008499--188008559 Score: 77
Period size: 28 Copynumber: 2.3 Consensus size: 26
188008489 GGCTGTCACA
* *
188008499 GTTCTGGTGGCTCTGCCGCGATTATCT
1 GTTCTGGTGACTCTGCCAC-ATTATCT
*
188008526 GTATCTGGTGACTCTGTCACATTATCT
1 GT-TCTGGTGACTCTGCCACATTATCT
188008553 GTTCTGG
1 GTTCTGG
188008560 CATCCATGCT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 5 0.17
27 11 0.37
28 14 0.47
ACGTcount: A:0.11, C:0.23, G:0.26, T:0.39
Consensus pattern (26 bp):
GTTCTGGTGACTCTGCCACATTATCT
Found at i:188017385 original size:40 final size:40
Alignment explanation
Indices: 188017193--188017378 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
188017183 TCGAATGATG
* * *
188017193 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
188017233 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
188017273 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
188017313 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
188017354 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
188017379 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:188017385 original size:80 final size:80
Alignment explanation
Indices: 188017193--188017411 Score: 245
Period size: 80 Copynumber: 2.8 Consensus size: 80
188017183 TCGAATGATG
* * ** *
188017193 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATC
188017257 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* *
188017273 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
188017336 CTGTGCGAGTTACTATAA
64 CTGTGCGAGTTACTA-AA
* **
188017354 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
188017412 TACGTGATTC
Statistics
Matches: 119, Mismatches: 12, Indels: 17
0.80 0.08 0.11
Matches are distributed among these distances:
79 17 0.14
80 92 0.77
81 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATCT
GTGCGAGTTACTAAA
Found at i:188025152 original size:40 final size:40
Alignment explanation
Indices: 188025095--188025252 Score: 160
Period size: 40 Copynumber: 4.0 Consensus size: 40
188025085 TCGAATGATG
* *
188025095 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-AAGTGACTAAA
* * *
188025135 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTGACTAAA
* *
188025175 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTGACTAAA
** * * *
188025215 TCCGGGTTAAG-TCCCGAAGGCATCTGTGCGAGTTACTA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGTGACTA
188025253 TANNNNNNNN
Statistics
Matches: 106, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 98 0.92
41 7 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTGACTAAA
Found at i:188025232 original size:80 final size:80
Alignment explanation
Indices: 188025095--188025252 Score: 198
Period size: 80 Copynumber: 2.0 Consensus size: 80
188025085 TCGAATGATG
* *
188025095 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCAT-T
1 TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATCT
188025159 CGTGCGAGTTACTAAA
66 -GTGCGAGTTACTAAA
* * **
188025175 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGACTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
188025237 TCTGTGCGAGTTACTA
63 TCTGTGCGAGTTACTA
188025253 TANNNNNNNN
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
79 1 0.01
80 58 0.85
81 9 0.13
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATCT
GTGCGAGTTACTAAA
Found at i:188027334 original size:25 final size:26
Alignment explanation
Indices: 188027255--188027365 Score: 125
Period size: 28 Copynumber: 4.2 Consensus size: 26
188027245 AGCATGGCTG
* *
188027255 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
188027281 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
188027309 CCAGAACAGAT-ATGTGGCAGACCCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* * *
188027334 CCAGATCAGATAATTTGTGGCATAGCTA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
188027362 CCAG
1 CCAG
188027366 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
25 21 0.29
26 8 0.11
27 15 0.21
28 29 0.40
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:188027338 original size:53 final size:54
Alignment explanation
Indices: 188027255--188027365 Score: 145
Period size: 53 Copynumber: 2.1 Consensus size: 54
188027245 AGCATGGCTG
**
188027255 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAA-TCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGACCCACCAGAT-CAGATAATTCGTGGCAGAGCCA
* * * *
188027309 CCAGAACAGAT-ATGTGGCAGACCCACCAGATCAGATAATTTGTGGCATAGCTA
1 CCAGAACAGATAATGTGACAGACCCACCAGATCAGATAATTCGTGGCAGAGCCA
188027362 CCAG
1 CCAG
188027366 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
52 7 0.14
53 32 0.64
54 11 0.22
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGACCCACCAGATCAGATAATTCGTGGCAGAGCCA
Found at i:188033732 original size:763 final size:757
Alignment explanation
Indices: 188031847--188034471 Score: 3710
Period size: 763 Copynumber: 3.5 Consensus size: 757
188031837 GGATGTTACA
* * *
188031847 CGTGTCTTGTGGCCGTGTGGATAAGTGAGTATGTATGCCCTGTTTTGCCACGGCCTAGACACACG
1 CGTGTCTTGTGGCCGTGTGGATAAGTTAGTATGTATGCCCTATTTCGCCACGGCCTAGACACACG
* * * * * *
188031912 GGCGTGTCTAATGCCGTGTGAGGCACAAGGTCTGTTCACACGGGCATGTGATATTTGTAGCTTAG
66 GGCGTGTCTAATGCCGTGTGAGGCACACGATCTGCTCACACGGGCGTGTGATCTTTGTAACTTAG
* * *
188031977 AAAAATTGTTAAGTTTCGAAAAAATTTTGTCTGTGTTCGGTTTAGTCCCGA-CTCTTCCTAATGC
131 AAAAATTGTTAAGTTTCAAAAAAAATTTGTATGTGTTCGGTTTAGTCCCGACCTCTTCCTAATGC
* **
188032041 ATGTTTATGGTCTCATTGACCTAAGAAAGGGACTTAATGTAAATGTTTGACTATGATATGATGAT
196 ATGTTTATGGTCTCATTGACCTAAGAAAGGGACTTAATGTTAATGTTTGACTATGATATGACAAT
* * * *
188032106 ACATGACTATTGATTTTGAAATGATTACGAAATGTTTCGATATGTCCGTTAATGCCTCTTAACCC
261 ACATGACTATTGATTGTGAAATGATTGCGAAATGTTCCGATATGTCCGGTAATGCCTCTTAACCC
* * *
188032171 TAGTCCGACGATGGATATGGGTTAGGGGTATATATATGTATCTGGCCAAGTGAAATGGTCATTTT
326 TAGTCAGACGATGGATACGGGTTAGGGGTATATATATGTATATGGCCAAGTGAAATGGTCATTTT
* **
188032236 GGTATGTCCATAGTTTGGAATTTGGTAATGTTTATAATGTGATTTTAATATGCTTTGATATAGAG
391 GGTATGTCCATAGTTAGGAATTTGGTAATGTTTAGCATGTGATTTTAATATGCTTTGATATAGAG
*
188032301 AATGAGCATGAAATTTC-TTGATGATATTATGAATTGATTGATAAATGTTT-GAGGTTGAGTTTG
456 AATGAGCATGAAA-TTCGTTGATGATATTATGAATTGATTGATACATGTTTGGA-GTTGAGTTTG
*
188032364 GCTGAAAATGTTGCATATATGATGCTTGATTTTGGAATTGTAGGGAGGATCCAAATGGGTGGCAT
519 GCTGAAAATGTTGCATATATGATGCTTGATTTTGGAATTGTAGGGAGGACCCAAATGGGTGGCAT
* * * * * *
188032429 CTTGTCCTTTTAAATGGCCTATTTTTGACCACACAGGCAAGGACACAGGCGTGTGTCTCTGTCGT
584 ATTGGCCTTGTAAATGGCCTATTTTTGCCCACAC-GGGAAGGACACGGGCGTGTGTCTCTGTCGT
* * *
188032494 GTTGCTCGAGGGCCATCTCGAAATGA-CTCTTGGTACACCACACAGT-CGAACACGCACAGCGTG
648 GTTGCTCGAGGGCCATTTCGAAATGAGCT-TGGGTAGACCACAC-GTGCGAACAC-CA-AG-GTG
* *
188032557 TGCCAGGCTGTGTGGCCAAGTAAGTTTCGACCACGGGCTAGACACACGGG
708 TGCCAGGCTATGTGGCCAAGTCAGTTTCGACCACGGGCTAGACACACGGG
* * *
188032607 CGTGTCTTGTGGCCATGTGGATAAGTCAGTATGTATGCCCTGTTTCGCCACGGCCTAGACACACG
1 CGTGTCTTGTGGCCGTGTGGATAAGTTAGTATGTATGCCCTATTTCGCCACGGCCTAGACACACG
* *
188032672 GGAGTGTCTAATGCCGTGTGAGGCACAC-AGTCTGCTCACACGGGCGTGTGATCTTTGTAGCTTA
66 GGCGTGTCTAATGCCGTGTGAGGCACACGA-TCTGCTCACACGGGCGTGTGATCTTTGTAACTTA
* * * * * * *
188032736 GAAAAATGGTTAAGTTTCAGAAAAATTTTGTCTGTGTTCTGTTTAGTCCTGACCTCTTCCTAATA
130 GAAAAATTGTTAAGTTTCAAAAAAAATTTGTATGTGTTCGGTTTAGTCCCGACCTCTTCCTAATG
*
188032801 CATGTTTATGGTCTCATTGACCTAAGAAATGGACTTAATGTTAAAT-TTTGACTATGATATGACA
195 CATGTTTATGGTCTCATTGACCTAAGAAAGGGACTTAATGTT-AATGTTTGACTATGATATGACA
* * * * *
188032865 ATAAATGACTATTGATTGTGAAATGATTCCGAAATGTTCTGATATGCCCTGTAATGCCTCTTAAC
259 ATACATGACTATTGATTGTGAAATGATTGCGAAATGTTCCGATATGTCCGGTAATGCCTCTTAAC
* * *
188032930 CCTAGTCCGACGATGGATACGGGTTAGGGGTACATATATGTATATGGCCAAGTAAAATGGTCATT
324 CCTAGTCAGACGATGGATACGGGTTAGGGGTATATATATGTATATGGCCAAGTGAAATGGTCATT
* *
188032995 TTGGTATGTCCATAGTTGGGAATTTGGTAATGTTTAGCATTTGATTTTAATATGCTTTGATATAG
389 TTGGTATGTCCATAGTTAGGAATTTGGTAATGTTTAGCATGTGATTTTAATATGCTTTGATATAG
* *
188033060 AGAATGAGCATGAAATTGGTTGATGATATTATGAATTGATTGATACATGTTTGGAGTTGAATTTG
454 AGAATGAGCATGAAATTCGTTGATGATATTATGAATTGATTGATACATGTTTGGAGTTGAGTTTG
*
188033125 GCTGAAAATGTTTCATATATGATGCTTGATTTTGGAATTGTAGGGAGGACCCAAATGGGTGGCAT
519 GCTGAAAATGTTGCATATATGATGCTTGATTTTGGAATTGTAGGGAGGACCCAAATGGGTGGCAT
* ** * * * * *
188033190 ATTGGCCTAGTAAATAACCTATTTTTGCCCGCACGGGTAGCGACACGGGCATGTGTCTCGGTCAT
584 ATTGGCCTTGTAAATGGCCTATTTTTGCCCACACGGGAAG-GACACGGGCGTGTGTCTCTGTCGT
* *
188033255 GTTGCTCGAGGGCCATTTTGTAATGAGCTTGGGTAGACCACACGGTTGCGAACACACAAGAGTGT
648 GTTGCTCGAGGGCCATTTCGAAATGAGCTTGGGTAGACCACAC-G-TGCGAACAC-CAAG-GTGT
* * * *
188033320 GCCAGGCTCTTTGGCAAAGTCAGTTTCGACCACGGGCTAGACACACTGG
709 GCCAGGCTATGTGGCCAAGTCAGTTTCGACCACGGGCTAGACACACGGG
* * * *
188033369 TGTGTCTTGTGGGCCGTGTGGATAAGTTAGTATGCATGCCCTATTTCGCCACAGCCTAGACACAT
1 CGTGTCTTGT-GGCCGTGTGGATAAGTTAGTATGTATGCCCTATTTCGCCACGGCCTAGACACAC
* * * * * *
188033434 GGGCGTGTCCAATGCCGTGTAAGGCACACGATTTGGTCACATGGGCGTGCGATCTTTGTAACTTA
65 GGGCGTGTCTAATGCCGTGTGAGGCACACGATCTGCTCACACGGGCGTGTGATCTTTGTAACTTA
*
188033499 GAAAAATTGTTATGTTTCAAAAAAAATTTGTATGTGTTCGGTTTAGTCCCGACCTCTTCCTAATG
130 GAAAAATTGTTAAGTTTCAAAAAAAATTTGTATGTGTTCGGTTTAGTCCCGACCTCTTCCTAATG
* * *
188033564 CATGTTTATGGTCTCATTGACCTAAGGAAGGGACTTAATATTGATGTTTGACTATGATATGACAA
195 CATGTTTATGGTCTCATTGACCTAAGAAAGGGACTTAATGTTAATGTTTGACTATGATATGACAA
** * * *
188033629 TGGATGACT-TTCGATTGTGAAATGATTGCAAAATGTTCCAATATGTCCGGTAATGCCTCTTTAC
260 TACATGACTATT-GATTGTGAAATGATTGCGAAATGTTCCGATATGTCCGGTAATGCCTCTTAAC
*
188033693 CCTAGTCTAG-CGATGGATACGGGTTAGGGGTATATATATGTATATGGCCAAGTGAAATGGTCAG
324 CCTAGTC-AGACGATGGATACGGGTTAGGGGTATATATATGTATATGGCCAAGTGAAATGGTCAT
* * *
188033757 TTTAGTATGTTCATAGCTAGGAATTTGGTAATGTTTAGCATGTGATTTTAATATGCTTTGATATA
388 TTTGGTATGTCCATAGTTAGGAATTTGGTAATGTTTAGCATGTGATTTTAATATGCTTTGATATA
** * *
188033822 TCGATTGAGCATGAAATTCGTTGGTGATATTATGAATTGATTGATACATGTTTGGAGTTGAGTTT
453 GAGAATGAGCATGAAATTCGTTGATGATATTATGAATTGATTGATACATGTTTGGAGTTGAGTTT
*
188033887 GGCTGAAAATGTTGCATATATGATGCTTGATTTTGGAGTT-TCAGGGAGGACCCAAATGGGTGGC
518 GGCTGAAAATGTTGCATATATGATGCTTGATTTTGGAATTGT-AGGGAGGACCCAAATGGGTGGC
* * * *
188033951 ATATTGGCCTTGTAAATGGTCTATTTTTACCCACACGGGCAGTGACATGGGCGTGTGTCTCTGTC
582 ATATTGGCCTTGTAAATGGCCTATTTTTGCCCACACGGGAAG-GACACGGGCGTGTGTCTCTGTC
* *
188034016 GTGTTGCTCGAGGGCCATTTCGAAATGAGCCTGGGCAGACCACACG-G-G-----C---GTGTGC
646 GTGTTGCTCGAGGGCCATTTCGAAATGAGCTTGGGTAGACCACACGTGCGAACACCAAGGTGTGC
*
188034071 CAGGCTATGTGGCCAAGTCAGTTTCAACCACGGGCTAGACACACGGG
711 CAGGCTATGTGGCCAAGTCAGTTTCGACCACGGGCTAGACACACGGG
* * *
188034118 CGTGTGTTGTGGCCGTGTGGATAAGTTAGTATGTATGCCCTATTTCACCACGGCCTAGACACATG
1 CGTGTCTTGTGGCCGTGTGGATAAGTTAGTATGTATGCCCTATTTCGCCACGGCCTAGACACACG
* * * *
188034183 GGCGTGTCTAATGTCGTGTGAGGGACACGGTCTGCTCACATGGGCGTGTGATCTTTGTAACTTAG
66 GGCGTGTCTAATGCCGTGTGAGGCACACGATCTGCTCACACGGGCGTGTGATCTTTGTAACTTAG
188034248 AAAAATTGTTAAGTTTCAGAAAAAAATTT-TATGTGTTCGGTTTAGTCCCGACCTCTTCCTAATG
131 AAAAATTGTTAAGTTTCA-AAAAAAATTTGTATGTGTTCGGTTTAGTCCCGACCTCTTCCTAATG
* * * **
188034312 CAAGTTTATGGTCTCATTGACCTAAGAAAGGGTCTTAATGTTAATGTTTGACTATGATAAGATGA
195 CATGTTTATGGTCTCATTGACCTAAGAAAGGGACTTAATGTTAATGTTTGACTATGATATGACAA
* * * * *
188034377 TGCATGACTTTTGATTGTGAAATGGTTGCGAAATGTTTCGATATGTCCGGTAATGCTTCTTAACC
260 TACATGACTATTGATTGTGAAATGATTGCGAAATGTTCCGATATGTCCGGTAATGCCTCTTAACC
* *
188034442 TTAGT-ACGTCGATGGATACGGGTTAGGGGT
325 CTAGTCA-GACGATGGATACGGGTTAGGGGT
188034472 GTTACATTTG
Statistics
Matches: 1675, Mismatches: 171, Indels: 50
0.88 0.09 0.03
Matches are distributed among these distances:
746 1 0.00
747 1 0.00
748 298 0.18
749 68 0.04
753 1 0.00
759 1 0.00
760 173 0.10
761 447 0.27
762 73 0.04
763 610 0.36
764 2 0.00
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (757 bp):
CGTGTCTTGTGGCCGTGTGGATAAGTTAGTATGTATGCCCTATTTCGCCACGGCCTAGACACACG
GGCGTGTCTAATGCCGTGTGAGGCACACGATCTGCTCACACGGGCGTGTGATCTTTGTAACTTAG
AAAAATTGTTAAGTTTCAAAAAAAATTTGTATGTGTTCGGTTTAGTCCCGACCTCTTCCTAATGC
ATGTTTATGGTCTCATTGACCTAAGAAAGGGACTTAATGTTAATGTTTGACTATGATATGACAAT
ACATGACTATTGATTGTGAAATGATTGCGAAATGTTCCGATATGTCCGGTAATGCCTCTTAACCC
TAGTCAGACGATGGATACGGGTTAGGGGTATATATATGTATATGGCCAAGTGAAATGGTCATTTT
GGTATGTCCATAGTTAGGAATTTGGTAATGTTTAGCATGTGATTTTAATATGCTTTGATATAGAG
AATGAGCATGAAATTCGTTGATGATATTATGAATTGATTGATACATGTTTGGAGTTGAGTTTGGC
TGAAAATGTTGCATATATGATGCTTGATTTTGGAATTGTAGGGAGGACCCAAATGGGTGGCATAT
TGGCCTTGTAAATGGCCTATTTTTGCCCACACGGGAAGGACACGGGCGTGTGTCTCTGTCGTGTT
GCTCGAGGGCCATTTCGAAATGAGCTTGGGTAGACCACACGTGCGAACACCAAGGTGTGCCAGGC
TATGTGGCCAAGTCAGTTTCGACCACGGGCTAGACACACGGG
Found at i:188040047 original size:24 final size:24
Alignment explanation
Indices: 188040002--188040047 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
188039992 TGCATTATGG
**
188040002 AAGGAAAATAAAGAAATGAAAAAA
1 AAGGAAAATAAAGAAAAAAAAAAA
* *
188040026 AAGGAAAATGATGAAAAAAAAA
1 AAGGAAAATAAAGAAAAAAAAA
188040048 GAGTGTGGAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.17, T:0.09
Consensus pattern (24 bp):
AAGGAAAATAAAGAAAAAAAAAAA
Found at i:188041365 original size:29 final size:29
Alignment explanation
Indices: 188041332--188041462 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
188041322 GTGACGAGAT
188041332 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
188041361 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
188041390 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
188041419 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
188041448 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
188041463 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:188048102 original size:24 final size:24
Alignment explanation
Indices: 188048057--188048102 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
188048047 TGCATTATGG
**
188048057 AAGGAAAATAAAGAAATGAAAAAA
1 AAGGAAAATAAAGAAAAAAAAAAA
* *
188048081 AAGGAAAATGATGAAAAAAAAA
1 AAGGAAAATAAAGAAAAAAAAA
188048103 GTGTGGATGC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.17, T:0.09
Consensus pattern (24 bp):
AAGGAAAATAAAGAAAAAAAAAAA
Found at i:188049410 original size:29 final size:29
Alignment explanation
Indices: 188049377--188049536 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
188049367 GTGACGAGAT
188049377 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
188049406 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
188049435 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
188049464 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
188049493 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
188049522 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
188049537 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:188057557 original size:46 final size:46
Alignment explanation
Indices: 188057501--188057673 Score: 167
Period size: 46 Copynumber: 3.7 Consensus size: 46
188057491 TGGTTGAGCA
*
188057501 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
188057547 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
188057592 CATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
188057640 CCCGAGCTCATTGAGTTGAG-CCTGAGTTCACTTA
1 TCCGAACTCATTGAGTTGAGTCC-GAGTTCACTTA
188057674 GGGGTGGGTT
Statistics
Matches: 104, Mismatches: 13, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 56 0.54
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:188057657 original size:93 final size:93
Alignment explanation
Indices: 188057498--188057668 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
188057488 AGATGGTTGA
* * * * *
188057498 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
188057563 TGAGTCC-GAGTTCGTGAGATGTAACTAG
66 TGAG-CCTGAGTTCGTGAGATGTAACTAG
* *
188057591 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
188057656 TGAGCCTGAGTTC
66 TGAGCCTGAGTTC
188057669 ACTTAGGGGT
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGCCTGAGTTCGTGAGATGTAACTAG
Found at i:188057935 original size:19 final size:20
Alignment explanation
Indices: 188057898--188057935 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
188057888 ATAAGGTGGT
188057898 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
188057918 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
188057936 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:188063111 original size:49 final size:49
Alignment explanation
Indices: 188063051--188063401 Score: 562
Period size: 49 Copynumber: 7.4 Consensus size: 49
188063041 TACATATGTG
* * * *
188063051 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
188063100 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
188063149 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
188063198 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
188063247 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAA--G--TG--TA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
188063290 --TG-TAAGGCCTAATGGCCGATGTGGTGAATGT-AAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
188063335 TGTGAT-AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
188063383 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
188063402 TAATGTAAAA
Statistics
Matches: 283, Mismatches: 8, Indels: 22
0.90 0.03 0.07
Matches are distributed among these distances:
39 3 0.01
40 29 0.10
41 3 0.01
43 4 0.01
45 4 0.01
47 30 0.11
48 21 0.07
49 189 0.67
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:188063553 original size:37 final size:37
Alignment explanation
Indices: 188063503--188063587 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
188063493 GGAATATGTT
*
188063503 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
188063540 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
188063577 CCGGGTAAGAC
1 CCGGGTAAGAC
188063588 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:188065461 original size:40 final size:40
Alignment explanation
Indices: 188065404--188065648 Score: 346
Period size: 40 Copynumber: 6.1 Consensus size: 40
188065394 GAGAATTGAG
* *
188065404 AGTGATATATCCAGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
*
188065444 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
*
188065484 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
* * * *
188065524 AGTGATGTATCCGGGCAAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
* * * *
188065564 AGTGATGTATCCGGGCAAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
* * * *
188065604 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
188065644 AGTGA
1 AGTGA
188065649 CGTGTATTCG
Statistics
Matches: 195, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 195 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
Found at i:188065855 original size:29 final size:29
Alignment explanation
Indices: 188065822--188066014 Score: 341
Period size: 29 Copynumber: 6.7 Consensus size: 29
188065812 CGAATGAATA
188065822 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
188065851 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
188065880 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
188065909 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
188065938 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
* *
188065967 GAGGCACTACGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
188065996 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
188066015 TTTTTCAACA
Statistics
Matches: 158, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 158 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:188069452 original size:49 final size:49
Alignment explanation
Indices: 188069392--188069744 Score: 571
Period size: 49 Copynumber: 7.4 Consensus size: 49
188069382 TACATATGTG
* * * *
188069392 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
188069441 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
188069490 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
188069539 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
188069588 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAA--G--TG--TA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
188069631 --TG-TAAGGCCTAATGGCCGATGTGGTGAATGTAAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
188069677 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
188069726 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
188069745 TAATGTAAAA
Statistics
Matches: 285, Mismatches: 10, Indels: 18
0.91 0.03 0.06
Matches are distributed among these distances:
40 32 0.11
41 2 0.01
42 1 0.00
43 2 0.01
44 2 0.01
45 2 0.01
46 2 0.01
47 1 0.00
48 2 0.01
49 239 0.84
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Done.