Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 602 of 770
Found at i:188356329 original size:17 final size:18
Alignment explanation
Indices: 188356287--188356335 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
188356277 AGTTGAAAAG
188356287 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
188356306 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
188356323 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
188356336 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:188357224 original size:40 final size:40
Alignment explanation
Indices: 188357158--188357324 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
188357148 AAATTGAATG
* * *
188357158 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
188357197 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
188357237 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
188357277 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
188357317 ATATCCGG
1 ATATCCGG
188357325 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:188364328 original size:17 final size:18
Alignment explanation
Indices: 188364286--188364334 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
188364276 AGTTGAAAAG
188364286 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
188364305 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
188364322 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
188364335 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:188365223 original size:40 final size:40
Alignment explanation
Indices: 188365157--188365323 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
188365147 AAATTGAATG
* * *
188365157 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
188365196 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
188365236 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
188365276 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
188365316 ATATCCGG
1 ATATCCGG
188365324 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:188368028 original size:46 final size:46
Alignment explanation
Indices: 188367978--188368199 Score: 261
Period size: 46 Copynumber: 4.8 Consensus size: 46
188367968 TGTTTGGGCA
*
188367978 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
188368024 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *** *
188368070 TCCGAACTCATTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GAA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* * *
188368117 TCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * **
188368163 CCCGAGCTTGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
188368200 GCGGGTTACA
Statistics
Matches: 151, Mismatches: 18, Indels: 14
0.83 0.10 0.08
Matches are distributed among these distances:
43 1 0.01
44 4 0.03
45 1 0.01
46 109 0.72
47 30 0.20
48 1 0.01
49 4 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:188379815 original size:46 final size:48
Alignment explanation
Indices: 188379747--188380013 Score: 204
Period size: 46 Copynumber: 5.8 Consensus size: 48
188379737 GGGAAAGGTA
*
188379747 CCGATGCCATGTCCAAGACATGGTCTTACACTGGCTCAT-ATCTC-AAG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAG
* *
188379794 CCGATGCATGTCCCAGACATGGTCTTACA---ACT-ATCATCTCGTAG
1 CCGATGCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAG
* * *
188379838 CCGATGCATGTCCCAGACAT-GTCTTACACTGGCTTA-CGTCTCGATG
1 CCGATGCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAG
* ** * * **
188379884 CCAACACATGTCCCAGACAT-GTCTTACACTAGCAC-TCATCTCG-TT
1 CCGATGCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAG
* * *
188379929 CTCAATGCCATGTTCCAGACATGGTCTTACACTGGCTC-TCATAATGCG--G
1 C-CGATG-CATGTCCCAGACATGGTCTTACACTGGCTCATCAT-CT-CGAAG
* * * *
188379978 CTGATGAATGTCCCAAACAT-GTCTTACACTAGCTCA
1 CCGATGCATGTCCCAGACATGGTCTTACACTGGCTCA
188380014 CAATAACCCC
Statistics
Matches: 179, Mismatches: 28, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
42 2 0.01
43 15 0.08
44 22 0.12
45 2 0.01
46 83 0.46
47 31 0.17
48 20 0.11
49 2 0.01
50 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
CCGATGCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAG
Found at i:188379852 original size:44 final size:45
Alignment explanation
Indices: 188379747--188379865 Score: 147
Period size: 44 Copynumber: 2.6 Consensus size: 45
188379737 GGGAAAGGTA
* *
188379747 CCGATGCCATGTCCAAGACATGGTCTTAC-ACTGGCTCATATCTCAAG
1 CCGATG-CATGTCCCAGACATGGTCTTACAACT-GATCA-ATCTCAAG
*
188379794 CCGATGCATGTCCCAGACATGGTCTTACAACT-ATC-ATCTCGTAG
1 CCGATGCATGTCCCAGACATGGTCTTACAACTGATCAATCTC-AAG
188379838 CCGATGCATGTCCCAGACAT-GTCTTACA
1 CCGATGCATGTCCCAGACATGGTCTTACA
188379866 CTGGCTTACG
Statistics
Matches: 67, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
43 13 0.19
44 22 0.33
45 2 0.03
46 21 0.31
47 9 0.13
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGGTCTTACAACTGATCAATCTCAAG
Found at i:188382774 original size:28 final size:28
Alignment explanation
Indices: 188382709--188382809 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
188382699 ATAGTGAATC
*
188382709 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
188382738 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
188382766 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
188382796 CGCACACTTAGTGC
1 CGCACACTTAGTGC
188382810 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:188390715 original size:28 final size:28
Alignment explanation
Indices: 188390653--188390750 Score: 108
Period size: 28 Copynumber: 3.4 Consensus size: 28
188390643 GGTGAATCCG
*
188390653 ACACTTAGTGCTATATGTATTC-AACTCGC
1 ACACTTAGTGCTATA--TAATCAAACTCGC
188390682 ACACTTAGTGCTATATAATCAAACTCGC
1 ACACTTAGTGCTATATAATCAAACTCGC
* * * *
188390710 ACACTTAGTGCTGTACAATTTTAAACCCGC
1 ACACTTAGTGCTATATAA--TCAAACTCGC
188390740 ACACTTAGTGC
1 ACACTTAGTGC
188390751 CAATTTGTCA
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.07
28 23 0.38
29 15 0.25
30 19 0.31
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.31
Consensus pattern (28 bp):
ACACTTAGTGCTATATAATCAAACTCGC
Found at i:188394765 original size:40 final size:40
Alignment explanation
Indices: 188394708--188394890 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
188394698 TCGAATGATG
* *
188394708 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
188394748 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
188394788 TCC-GGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
188394825 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
188394866 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
188394891 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
37 19 0.15
38 15 0.12
39 16 0.13
40 67 0.53
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:188394842 original size:77 final size:80
Alignment explanation
Indices: 188394709--188394888 Score: 244
Period size: 77 Copynumber: 2.3 Consensus size: 80
188394699 CGAATGATGT
*
188394709 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
*
188394774 TGCGAGTTACTA-ATT
66 TGCGAGTTACTATA-A
* * **
188394789 CC-GGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTT
188394850 GTGCGAGTTACTATAA
65 GTGCGAGTTACTATAA
*
188394866 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
188394889 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
76 1 0.01
77 45 0.51
78 22 0.25
79 19 0.21
80 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTATAA
Found at i:188402772 original size:40 final size:40
Alignment explanation
Indices: 188402715--188402898 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
188402705 TCGAATGATG
* *
188402715 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
188402755 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
188402795 TCCAGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
188402833 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
188402874 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
188402899 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
38 25 0.20
39 19 0.15
40 73 0.57
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:188402850 original size:78 final size:80
Alignment explanation
Indices: 188402719--188402896 Score: 238
Period size: 78 Copynumber: 2.2 Consensus size: 80
188402709 ATGATGTCCG
*
188402719 GGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGC
*
188402784 GAGTTACTA-ATTCCA
66 GAGTTACTATA-ACCA
* * **
188402799 GGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTG
*
188402861 CGAGTTACTATAACCG
65 CGAGTTACTATAACCA
*
188402877 GGCTATGTCCCGAAGGCATT
1 GGCTAAGTCCCGAAGGCATT
188402897 TGAACGAGTA
Statistics
Matches: 87, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
77 1 0.01
78 51 0.59
79 28 0.32
80 7 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGC
GAGTTACTATAACCA
Found at i:188409331 original size:47 final size:47
Alignment explanation
Indices: 188409277--188409470 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
188409267 TTAGGATTTT
** * *
188409277 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
188409324 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
188409371 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
188409418 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
188409465 ATGTGA
1 ATGTGA
188409471 AATATGTATG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:188409377 original size:22 final size:22
Alignment explanation
Indices: 188409306--188409377 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
188409296 GTATATATGA
188409306 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
188409328 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
188409353 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
188409375 GAT
1 GAT
188409378 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:188409426 original size:25 final size:25
Alignment explanation
Indices: 188409351--188409426 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
188409341 ATGCATATAT
188409351 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
188409376 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
188409398 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
188409423 GTGA
1 GTGA
188409427 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:188409551 original size:52 final size:52
Alignment explanation
Indices: 188409440--188409575 Score: 192
Period size: 52 Copynumber: 2.7 Consensus size: 52
188409430 TGAACATGCA
*
188409440 TATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATGAGATATG
* *
188409488 CATATGTGGTAAAGCCAAATGG-TCAATGTGAAATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATATGAGATATG
*
188409540 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
188409576 GTAGGCGATG
Statistics
Matches: 76, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
47 1 0.01
48 26 0.34
50 1 0.01
51 1 0.01
52 46 0.61
53 1 0.01
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (52 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATGAGATATG
Found at i:188411379 original size:49 final size:49
Alignment explanation
Indices: 188411298--188411555 Score: 430
Period size: 49 Copynumber: 5.3 Consensus size: 49
188411288 CCCTTCGGGA
* * * * *
188411298 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGC
188411345 CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGC
*
188411394 CTTCTCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGC
*
188411443 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGC
*
188411492 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGC
188411541 CTTATCACATATATA
1 CTTATCACATATATA
188411556 TATCTCATAC
Statistics
Matches: 201, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 10 0.05
48 1 0.00
49 190 0.95
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGC
Found at i:188413855 original size:37 final size:37
Alignment explanation
Indices: 188413747--188413855 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
188413737 GGAAATATAT
* *
188413747 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
188413784 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
188413821 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
188413856 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:188420071 original size:40 final size:39
Alignment explanation
Indices: 188419995--188420176 Score: 183
Period size: 40 Copynumber: 4.6 Consensus size: 39
188419985 GAATGATGTC
* *
188419995 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAATT
1 CGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATT
*
188420035 CGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT-AATT
1 CGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATT
* * * *
188420074 CCGGGCTAAGCCCAAAGGCA-TTGTGTGAGTTATTAAATT
1 -CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATT
* *
188420113 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-C
1 CGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AATT
*
188420153 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGT-CCGAAGGCATTTG
188420177 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
38 20 0.17
39 24 0.20
40 65 0.55
41 10 0.08
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (39 bp):
CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATT
Found at i:188420128 original size:78 final size:80
Alignment explanation
Indices: 188419993--188420174 Score: 237
Period size: 78 Copynumber: 2.3 Consensus size: 80
188419983 TCGAATGATG
*
188419993 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATTCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATTCGGACTAAGATCCGAAGGCATTT
188420058 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * * * **
188420072 TTCCGGGCTAAG-CCCAAAGGCATTGTG-TGAGTTATTAAATTCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATTCGGACTAAGAT-CCGAAGGCAT
188420134 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* *
188420151 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
188420175 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
77 1 0.01
78 52 0.58
79 25 0.28
80 11 0.12
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATTCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:188422335 original size:51 final size:49
Alignment explanation
Indices: 188422211--188422405 Score: 201
Period size: 49 Copynumber: 3.9 Consensus size: 49
188422201 TAGTCAAAGC
* * ****
188422211 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATACAACCAAT
1 TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * *
188422260 TATCCGGTACACGTAGTAGGCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* ** * *
188422311 TATCGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * *
188422360 TATCATGTATACTTAGTATCCTGCACTTAGTACTACACACGTGACC
1 TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
188422406 TCACAATAGA
Statistics
Matches: 120, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 76 0.63
50 6 0.05
51 38 0.32
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (49 bp):
TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:188422358 original size:100 final size:100
Alignment explanation
Indices: 188422211--188422403 Score: 296
Period size: 100 Copynumber: 1.9 Consensus size: 100
188422201 TAGTCAAAGC
* *
188422211 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATACAACCAATTATCCGGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATACAACCAATTATCAGGTACACGTAG
*
188422276 TAGGCTGCACTTAGTACTACACACGTGATCGAAGT
66 TAGCCTGCACTTAGTACTACACACGTGATCGAAGT
* * * * * *
188422311 TATCGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCATGTATACTTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATACAACCAATTATCAGGTACACGTAG
*
188422376 TATCCTGCACTTAGTACTACACACGTGA
66 TAGCCTGCACTTAGTACTACACACGTGA
188422404 CCTCACAATA
Statistics
Matches: 83, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (100 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATACAACCAATTATCAGGTACACGTAG
TAGCCTGCACTTAGTACTACACACGTGATCGAAGT
Found at i:188423841 original size:295 final size:295
Alignment explanation
Indices: 188423309--188423865 Score: 893
Period size: 295 Copynumber: 1.9 Consensus size: 295
188423299 TTTTACCCAA
*
188423309 TGTGACAGCCCAAAATTGACCCTAGTCGGAATGTGGTCTCGGGACCACAAAATCGAGGCATAAAA
1 TGTGACAGCCCAAAATTGACCCTAGTCGGAATGTGGTCTCGGGACCACAAAACCGAGGCATAAAA
* * *
188423374 ATAATTTAAAATTTATTTTGATGCCTATAATATGTGTGTGCTCATGTGTGACATTTTTGATGTTT
66 ATAATTAAAAATTTATTTTGATGCCTATAATATGTGTGTGCTCATGTATGACATTTTTGATGATT
* *
188423439 CGATTTAGAGTTATAAAGGTAAATTTCACTAGAAAAGACCTAGTAGTAAACTTTGAAAGTATGAT
131 CGATTTAGAGTTATAAAGGTAAATTCCACAAGAAAAGACCTAGTAGTAAACTTTGAAAGTATGAT
* * * * * * *
188423504 GGGGAGATGTGTGATGACTAATTGATCATGCATGCAAAAATAAAGGATTTGCGTGTCAAATTTCC
196 AGGGAAATGTGTGATGACTAATTAAGCATGCATGCAAAAATAAAGGACTTGCATGTCAAATTCCC
188423569 CCAAAGGAAGCTTAGTGGCCGGCCATGACATGGTT
261 CCAAAGGAAGCTTAGTGGCCGGCCATGACATGGTT
*
188423604 TGTGACAGCCCAAAATTGACCCTAGTCGGAATGTGGTTTCGGGACCACAAAACCGAGGCATAAAA
1 TGTGACAGCCCAAAATTGACCCTAGTCGGAATGTGGTCTCGGGACCACAAAACCGAGGCATAAAA
188423669 ATAATTAAAAATTTATTTTGATGCCTATAATATGTGTGTGCTCATGTATGACATTTTATGATGAT
66 ATAATTAAAAATTTATTTTGATGCCTATAATATGTGTGTGCTCATGTATGACATTTT-TGATGAT
* * * * * *
188423734 T-GATTTAGTGTTATAAGGGTGAATTCCACAAGAAAGGACTTAGTAGTGAACTTTGAAAGTATGA
130 TCGATTTAGAGTTATAAAGGTAAATTCCACAAGAAAAGACCTAGTAGTAAACTTTGAAAGTATGA
*
188423798 TAGGGAAATGTGTGATGACTAATTAAAGCATGCATGC-AAAATAATGGACTTGCATGTCAAATTC
195 TAGGGAAATGTGTGATGACTAATT-AAGCATGCATGCAAAAATAAAGGACTTGCATGTCAAATTC
188423862 CCCC
259 CCCC
188423866 TTTTATAGGT
Statistics
Matches: 239, Mismatches: 21, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
295 222 0.93
296 17 0.07
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.30
Consensus pattern (295 bp):
TGTGACAGCCCAAAATTGACCCTAGTCGGAATGTGGTCTCGGGACCACAAAACCGAGGCATAAAA
ATAATTAAAAATTTATTTTGATGCCTATAATATGTGTGTGCTCATGTATGACATTTTTGATGATT
CGATTTAGAGTTATAAAGGTAAATTCCACAAGAAAAGACCTAGTAGTAAACTTTGAAAGTATGAT
AGGGAAATGTGTGATGACTAATTAAGCATGCATGCAAAAATAAAGGACTTGCATGTCAAATTCCC
CCAAAGGAAGCTTAGTGGCCGGCCATGACATGGTT
Found at i:188425438 original size:40 final size:40
Alignment explanation
Indices: 188425332--188425515 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 40
188425322 TGCTGGAAAT
* * * * * **
188425332 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
188425372 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
188425412 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
188425450 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
188425491 CATAACCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
188425516 GATTGAACGA
Statistics
Matches: 114, Mismatches: 27, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 84 0.74
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:188425501 original size:79 final size:81
Alignment explanation
Indices: 188425333--188425515 Score: 185
Period size: 79 Copynumber: 2.3 Consensus size: 81
188425323 GCTGGAAATT
* * *
188425333 ATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATGGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCA
*
188425398 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
188425414 -TATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATGGTGCTAATCGCT-ATATCCGGGCTAAGACCCGAAGGC
* * * *
188425476 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* *
188425492 ATAACCGGGCTATGTCCCGAAGGC
1 ATAACCGGGCTAAGACCCGAAGGC
188425516 GATTGAACGA
Statistics
Matches: 83, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
78 2 0.02
79 54 0.65
80 27 0.33
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.22
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATGGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:188428829 original size:22 final size:22
Alignment explanation
Indices: 188428786--188428827 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
188428776 TGGCGTACAT
188428786 ATAAAAACATATACGTGATATA
1 ATAAAAACATATACGTGATATA
*
188428808 ATAAAAATATATA-GT-ATATA
1 ATAAAAACATATACGTGATATA
188428828 TATATACATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 2 0.11
22 12 0.63
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.31
Consensus pattern (22 bp):
ATAAAAACATATACGTGATATA
Found at i:188431221 original size:86 final size:88
Alignment explanation
Indices: 188431102--188431339 Score: 340
Period size: 86 Copynumber: 2.7 Consensus size: 88
188431092 ATCTATTTCC
** * *
188431102 CTACTGCTTAGGG-TTTTAGATCTGTAAAC-TCAACCTGTTACCCTACTGCTTGGGGGTTTAAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAAACTTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG
*
188431165 TTCTTCGTCTTCGGTCTGCTCCA
66 TTCTTCGTCTTCGATCTGCTCCA
* *
188431188 CTACTGCTTAGGGAGATCAGATCTG-CAA-TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAAACTTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG
*
188431251 TTCTTCGTCTTCGATCTGGTCCA
66 TTCTTCGTCTTCGATCTGCTCCA
* * *
188431274 CTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
1 CTACTGCTTAGGGAGATAAGATCTGTAAA-CTTCAACCTGTTACCCTACTGCTTAGGGGTTTAAG
188431339 G
65 G
188431340 CTTGTAAATT
Statistics
Matches: 135, Mismatches: 12, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
86 91 0.67
87 10 0.07
89 34 0.25
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (88 bp):
CTACTGCTTAGGGAGATAAGATCTGTAAACTTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG
TTCTTCGTCTTCGATCTGCTCCA
Found at i:188431293 original size:44 final size:44
Alignment explanation
Indices: 188431144--188431293 Score: 137
Period size: 44 Copynumber: 3.5 Consensus size: 44
188431134 ACCTGTTACC
*
188431144 CTACTGCTT-GGGGGTTTAAGGTTCTTCGTCTTCGGTCTGCTCCA
1 CTACTGCTTAGGGGG-TTAAGGTTCTTCGTCTTCGATCTGCTCCA
* * * * * ** * * *
188431188 CTACTGCTTAGGGAGATCA-GATCTGC-AATTCAACCTGTTACC-
1 CTACTGCTTAGGGGGTTAAGGTTCTTCGTCTTCGATCTGCT-CCA
* *
188431230 CTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGGTCCA
1 CTACTGCTTAGGGGGTTAAGGTTCTTCGTCTTCGATCTGCTCCA
188431274 CTACTGCTTAGGGGGTTAAG
1 CTACTGCTTAGGGGGTTAAG
188431294 ATCTGTAAAT
Statistics
Matches: 78, Mismatches: 23, Indels: 10
0.70 0.21 0.09
Matches are distributed among these distances:
42 22 0.28
43 14 0.18
44 38 0.49
45 4 0.05
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.35
Consensus pattern (44 bp):
CTACTGCTTAGGGGGTTAAGGTTCTTCGTCTTCGATCTGCTCCA
Found at i:188431373 original size:43 final size:45
Alignment explanation
Indices: 188431100--188431380 Score: 173
Period size: 43 Copynumber: 6.5 Consensus size: 45
188431090 TGATCTATTT
* * *
188431100 CCCTACTGCTTA-GGGTTTTAGATCTGTAAA-C-TCAACCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTA
* ** * * *
188431142 CCCTACTGCTT-GGGGGTTTAAGGTTCT-T-CGTCTTCGGTCTGCT-
1 CCCTACTGCTTAGGGGG-TTAA-GATCTGTAAATCTTCAGCCTGTTA
* * * * *
188431185 CCACTACTGCTTAGGGAGATCAGATCTG-CAA--TTCAACCTGTTA
1 CC-CTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTA
* * ** * *
188431228 CCCTACTGCTTAGGGGTTTAAGGTTCT-T-CGTCTTC-GATCTGGT-
1 CCCTACTGCTTAGGGGGTTAA-GATCTGTAAATCTTCAG-CCTGTTA
188431271 CCACTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTA
1 CC-CTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTA
* * *
188431317 CCCTACTGCTTAGGGGTTTAAG-GCTTGTAAAT-TT-AGCTTGTTA
1 CCCTACTGCTTAGGGGGTTAAGATC-TGTAAATCTTCAGCCTGTTA
188431360 CCCTACTGCTTAGGGGGTTAA
1 CCCTACTGCTTAGGGGGTTAA
188431381 AGCCCATCAT
Statistics
Matches: 179, Mismatches: 39, Indels: 41
0.69 0.15 0.16
Matches are distributed among these distances:
42 36 0.20
43 51 0.28
44 50 0.28
45 39 0.22
46 3 0.02
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (45 bp):
CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTA
Found at i:188431399 original size:132 final size:133
Alignment explanation
Indices: 188431223--188431475 Score: 298
Period size: 132 Copynumber: 1.9 Consensus size: 133
188431213 CAATTCAACC
* * ** * *
188431223 TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTG-GTCCACTACTG-CT-TAG
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTGTCC-CTACTGACTCTAG
* * * *
188431285 -GGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAAT
65 AGAGG-TAAGATCTGT-AATCTTCAACCTATTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAAT
188431349 TTAGCT
128 TTAGCT
* *
188431355 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATCTGTTTCCCTACTGCAACTCTA
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTGTCCCTACTG--ACTCTA
* * *
188431420 GAGAGGTGAGATCTGTGATTTTCAACCTATTACCCTACTGCTTAGGGGGTTAAGGC
64 GAGAGGTAAGATCTGTAATCTTCAACCTATTACCCTACTGCTTAGGGGGTTAAGGC
188431476 CCATCTTCTT
Statistics
Matches: 100, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
132 45 0.45
133 3 0.03
135 37 0.37
136 12 0.12
137 3 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (133 bp):
TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTGTCCCTACTGACTCTAGA
GAGGTAAGATCTGTAATCTTCAACCTATTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTA
GCT
Found at i:188431409 original size:44 final size:44
Alignment explanation
Indices: 188431355--188431510 Score: 118
Period size: 44 Copynumber: 3.5 Consensus size: 44
188431345 AAATTTAGCT
188431355 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATC
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATC
* * * * * ** * * *
188431399 TGTTTCCCTACTGCAACTCTAGAGAGGTGAGA-TCTGTGAT-TTTCAACC
1 TGTTACCCTACTG---CT-TAG-GGGGTTAAAGCCCATCATCTTT-GATC
* * *
188431447 TATTACCCTACTGCTTAGGGGGTTAAGGCCCATCTTCTTTGATC
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATC
*
188431491 TGTTTCCCTACTGCTTAGGG
1 TGTTACCCTACTGCTTAGGG
188431511 TGATGAGATC
Statistics
Matches: 79, Mismatches: 25, Indels: 16
0.66 0.21 0.13
Matches are distributed among these distances:
43 5 0.06
44 38 0.48
45 5 0.06
47 5 0.06
48 20 0.25
49 6 0.08
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (44 bp):
TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATC
Found at i:188448432 original size:17 final size:18
Alignment explanation
Indices: 188448410--188448444 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
188448400 GATATGATAC
*
188448410 TAAAAT-TATCAAAAAAT
1 TAAAATATATAAAAAAAT
188448427 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
188448445 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:188448745 original size:17 final size:19
Alignment explanation
Indices: 188448730--188448800 Score: 105
Period size: 17 Copynumber: 3.9 Consensus size: 19
188448720 AATCATATCT
*
188448730 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
188448749 TCTAAG-TTGCA-ATCATA
1 TCTAAGATTGCATATCATA
188448766 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
188448783 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
188448801 TGAAGATTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
17 27 0.57
18 8 0.17
19 12 0.26
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:188448764 original size:39 final size:35
Alignment explanation
Indices: 188448730--188448800 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 35
188448720 AATCATATCT
188448730 TCTAAGATTGCATATCACATCTAAG-TTGCAATCATA
1 TCTAAGATTG--TATCACATCTAAGATTGCAATCATA
*
188448766 TCTAAGATTGTATCATATCTAAGATTGCATATCAT
1 TCTAAGATTGTATCACATCTAAGATTGCA-ATCAT
188448801 TGAAGATTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 12 0.38
35 5 0.16
36 15 0.47
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCACATCTAAGATTGCAATCATA
Found at i:188448807 original size:34 final size:35
Alignment explanation
Indices: 188448733--188448812 Score: 87
Period size: 34 Copynumber: 2.3 Consensus size: 35
188448723 CATATCTTCT
*
188448733 AAGATTGCATATCACATCTAAGTTGCAATCATATCT
1 AAGATTG-ATATCACATCTAAGTTGCAATCATATCG
*
188448769 AAGATTG-TATCATATCTAAGATTGCATATCAT-T-G
1 AAGATTGATATCACATCTAAG-TTGCA-ATCATATCG
188448803 AAGATT-ATAT
1 AAGATTGATAT
188448813 TTCCATATGA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
34 21 0.54
35 6 0.15
36 12 0.31
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (35 bp):
AAGATTGATATCACATCTAAGTTGCAATCATATCG
Found at i:188448955 original size:21 final size:20
Alignment explanation
Indices: 188448917--188448956 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
188448907 TTGGACTTCG
**
188448917 TTTTTTTTTTGGGTTTATTA
1 TTTTTTTTTTGGACTTATTA
188448937 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGGACTTATT
188448957 TCTGGGCCCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTTGGACTTATTA
Found at i:188449179 original size:43 final size:44
Alignment explanation
Indices: 188449114--188449331 Score: 160
Period size: 45 Copynumber: 4.9 Consensus size: 44
188449104 CTCTTGACGG
* **
188449114 CTTCAATCTGCTCCCATCTAATACAGAGACACCAAATCTGCT-T
1 CTTCAATCTGCTCCCGTCTAATACAGAGATGCCAAATCTGCTAT
*
188449157 CTTCAATCTGCTCTCCGT-TAATACAGAGATGCCAAATCTGTTAT
1 CTTCAATCTGCTC-CCGTCTAATACAGAGATGCCAAATCTGCTAT
* * * *
188449201 CTCCGATTTGCTCCCCGTCTAATATAGAGATGCCAAATCTG-TCAT
1 CTTCAATCTGCT-CCCGTCTAATACAGAGATGCCAAATCTGCT-AT
* * * * * * *
188449246 TTTGC-ATCTGCT-TCGATGTAA-ACACATGAAGGTCAGATCTGCTATGT
1 CTT-CAATCTGCTCCCG-TCTAATACAGA-G-ATGCCAAATCTGCTA--T
*
188449293 CTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
1 CTTCAATCTGCT-CCCGTCTAATACAGAGATGCCAAATC
188449332 ATCTTGGATC
Statistics
Matches: 134, Mismatches: 25, Indels: 28
0.72 0.13 0.15
Matches are distributed among these distances:
43 39 0.29
44 23 0.17
45 41 0.31
46 3 0.02
47 17 0.13
48 5 0.04
49 6 0.04
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.31
Consensus pattern (44 bp):
CTTCAATCTGCTCCCGTCTAATACAGAGATGCCAAATCTGCTAT
Found at i:188449400 original size:78 final size:78
Alignment explanation
Indices: 188449271--188449561 Score: 457
Period size: 78 Copynumber: 3.8 Consensus size: 78
188449261 ATGTAAACAC
*
188449271 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCT
188449336 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * *
188449349 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCTCCGTCTAATATAGAGATGCCAAATAATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATC
188449413 TT-GATCTGCTTCA
65 TTGGATCTGCTTCA
*
188449426 ATGAAGGTCAGATCTACTATGTCTTC-AT-TGCTC-CCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCT
188449488 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* **
188449501 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATC
188449562 TGTTTCTTCG
Statistics
Matches: 193, Mismatches: 14, Indels: 12
0.88 0.06 0.05
Matches are distributed among these distances:
74 28 0.15
75 41 0.21
76 6 0.03
77 36 0.19
78 80 0.41
79 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:188449553 original size:152 final size:155
Alignment explanation
Indices: 188449271--188449560 Score: 498
Period size: 152 Copynumber: 1.9 Consensus size: 155
188449261 ATGTAAACAC
*
188449271 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
* * *
188449336 TGGATCTGCTTCAATGAAGGTCCAATCTGTTATGTCTTTGATCTGCTCTCCGTCTAATATAGAGA
66 TGGATCTGCTTCAATGAAGGTCCAATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGA
188449401 TGCCAAATAATCTTGATCTGCTTCA
131 TGCCAAATAATCTTGATCTGCTTCA
188449426 ATGAAGGTCAGATCTACTATGTCTTC-AT-TGCT-CCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
188449488 TGGATCTGCTTCAATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAG
66 TGGATCTGCTTCAATGAAGGTCCA-ATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAG
188449552 ATGCCAAAT
130 ATGCCAAAT
188449561 CTGTTTCTTC
Statistics
Matches: 129, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
151 2 0.02
152 96 0.74
153 4 0.03
154 2 0.02
155 25 0.19
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (155 bp):
ATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCAATGAAGGTCCAATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGA
TGCCAAATAATCTTGATCTGCTTCA
Found at i:188449693 original size:87 final size:88
Alignment explanation
Indices: 188449594--188449760 Score: 205
Period size: 89 Copynumber: 1.9 Consensus size: 88
188449584 ACAGTACAGA
* * * *
188449594 GATGCCAAATCATCTTAGATCTGC-TTCA-GTGTAAACA-CGTGAATGCCAAATCTGCTATGTCT
1 GATGCCAAATCATCTTAGATCTACATTCATGTGGAAACATC-CGAAGGCCAAATCTGCTATGTCT
188449656 TCGATCTGCTCCTTGTCAACGCAAG
65 TCGATCTGCT-CTTGTCAACGCAAG
* * * ** *
188449681 GATGCTAAATCATCTTGGATCTACATTGATGTGGAAACATCCGAAGGTTAGATCTGCTATGTCTT
1 GATGCCAAATCATCTTAGATCTACATTCATGTGGAAACATCCGAAGGCCAAATCTGCTATGTCTT
188449746 CGATCTGCTCTTGTC
66 CGATCTGCTCTTGTC
188449761 GAATATGGAG
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
87 21 0.31
88 9 0.13
89 36 0.54
90 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (88 bp):
GATGCCAAATCATCTTAGATCTACATTCATGTGGAAACATCCGAAGGCCAAATCTGCTATGTCTT
CGATCTGCTCTTGTCAACGCAAG
Found at i:188457845 original size:17 final size:18
Alignment explanation
Indices: 188457823--188457857 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
188457813 GATATGATAC
*
188457823 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
188457840 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
188457858 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:188458153 original size:23 final size:22
Alignment explanation
Indices: 188458110--188458167 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
188458100 AAAAGGTATC
* *
188458110 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
188458131 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
188458154 TGCATATCATATCT
1 TACAAATCATATCT
188458168 AAGATTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:188458170 original size:19 final size:19
Alignment explanation
Indices: 188458146--188458198 Score: 85
Period size: 16 Copynumber: 2.9 Consensus size: 19
188458136 AATCATATCT
188458146 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
188458165 TCTAAGATTG--TAT-ATA
1 TCTAAGATTGCATATCATA
188458181 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
188458199 TGAAGATTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
16 13 0.42
17 3 0.10
18 3 0.10
19 12 0.39
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:188459914 original size:44 final size:46
Alignment explanation
Indices: 188459751--188459923 Score: 180
Period size: 44 Copynumber: 3.8 Consensus size: 46
188459741 TATTTGGGCA
* * *
188459751 TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
* * *
188459796 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC---G
*
188459841 CATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
*
188459889 -CC-AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
188459924 GCGGTTACAT
Statistics
Matches: 108, Mismatches: 10, Indels: 21
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 31 0.29
45 26 0.24
46 7 0.06
47 27 0.25
48 3 0.03
50 5 0.05
51 3 0.03
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
Found at i:188462894 original size:30 final size:30
Alignment explanation
Indices: 188462820--188462895 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 30
188462810 TATCGTATCT
* *
188462820 TGGGTTTCTTTATCCTGGATCTTTTTATTC
1 TGGGTTTTTTTATCTTGGATCTTTTTATTC
*
188462850 TGGGTTTTTCTATCTTGGAT-TTCTTTATTC
1 TGGGTTTTTTTATCTTGGATCTT-TTTATTC
*
188462880 -GGTTTTTTGTTATCTT
1 TGGGTTTTT-TTATCTT
188462896 TTCCATAATT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
29 9 0.23
30 30 0.77
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (30 bp):
TGGGTTTTTTTATCTTGGATCTTTTTATTC
Found at i:188471870 original size:40 final size:40
Alignment explanation
Indices: 188471811--188472018 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
188471801 CAATTGAATG
* * * *
188471811 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
188471851 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
188471891 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
188471931 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
188471971 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
188472011 ATATCCGG
1 ATATCCGG
188472019 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:188471949 original size:80 final size:80
Alignment explanation
Indices: 188471813--188472018 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
188471803 ATTGAATGAT
* * ** * * *
188471813 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
188471877 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
188471893 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
188471958 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
188471973 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
188472019 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:188474486 original size:47 final size:47
Alignment explanation
Indices: 188474415--188474827 Score: 612
Period size: 47 Copynumber: 8.7 Consensus size: 47
188474405 GCCCTTCGGA
* * * * *
188474415 CTTATCACAT-TCATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATAT-ATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
188474462 CCTATCACATATATACACTTTCACATTTATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
188474509 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
188474556 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
188474603 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
188474652 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
188474699 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
188474748 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
188474797 CTTATCTCATATATATACATTCACATTCATC
1 CTTATCACATATATACACTTTCACATTCATC
188474828 GCATAAATCC
Statistics
Matches: 346, Mismatches: 15, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
47 205 0.59
48 1 0.00
49 140 0.40
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:188474516 original size:22 final size:22
Alignment explanation
Indices: 188474488--188474565 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
188474478 ACTTTCACAT
188474488 TTATCACATTGGCCATTCGGCC
1 TTATCACATTGGCCATTCGGCC
** * * *
188474510 TTATCACATATATACACTTTC-ACA
1 TTATCACAT-T-GGC-CATTCGGCC
188474534 TTCATCACATTGGCCATTCGGCC
1 TT-ATCACATTGGCCATTCGGCC
188474557 TTATCACAT
1 TTATCACAT
188474566 ATATACACTT
Statistics
Matches: 41, Mismatches: 10, Indels: 10
0.67 0.16 0.16
Matches are distributed among these distances:
22 20 0.49
23 5 0.12
24 5 0.12
25 11 0.27
ACGTcount: A:0.26, C:0.29, G:0.10, T:0.35
Consensus pattern (22 bp):
TTATCACATTGGCCATTCGGCC
Found at i:188474645 original size:96 final size:96
Alignment explanation
Indices: 188474415--188474827 Score: 631
Period size: 96 Copynumber: 4.3 Consensus size: 96
188474405 GCCCTTCGGA
* * * * * * *
188474415 CTTATCACAT-T-CATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* * *
188474478 ACTTTCACATTTATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
188474509 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
188474572 ACTTTCACATTCATCACATCGGCCATTAGGT
66 ACTTTCACATTCATCACATCGGCCATTAGGC
188474603 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
188474668 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
188474699 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
188474764 ACACTTTCACATTCATCACATCGGCCATTCGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
188474797 CTTATCTCATATATATACA--TTCACATTCATC
1 CTTATCACATATATATACACTTTCACATTCATC
188474828 GCATAAATCC
Statistics
Matches: 299, Mismatches: 14, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
93 1 0.00
94 90 0.30
96 152 0.51
98 56 0.19
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:188477842 original size:40 final size:40
Alignment explanation
Indices: 188477810--188478001 Score: 330
Period size: 40 Copynumber: 4.8 Consensus size: 40
188477800 CCAGCATGAT
* * *
188477810 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
188477850 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
188477890 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
188477930 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
188477970 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
188478002 CTCAATTCTC
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 145 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:188479684 original size:49 final size:47
Alignment explanation
Indices: 188479416--188479971 Score: 871
Period size: 47 Copynumber: 11.7 Consensus size: 47
188479406 CCCTTCGGGA
* * * * * *
188479416 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
188479463 CCTATCACATATATACACTTTCACATTGATCACATTGGCCATTGGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
188479510 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
188479557 CTTATCACATATATACACTTTCACATTAATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
188479604 CTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
188479651 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
188479700 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
188479747 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
188479796 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
188479843 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
188479892 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCA-GC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
* *
188479941 CTTATCTCATATATACACATTCACATTCATC
1 CTTATCACATATATACACTTTCACATTCATC
188479972 GCATAAAATC
Statistics
Matches: 482, Mismatches: 20, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
47 296 0.61
49 185 0.38
50 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:188479693 original size:96 final size:94
Alignment explanation
Indices: 188479416--188479971 Score: 871
Period size: 96 Copynumber: 5.8 Consensus size: 94
188479406 CCCTTCGGGA
* * * * * * *
188479416 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
188479481 TTTCACATTGATCACATTGGCCATTGGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
188479510 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
188479575 TTTCACATTAATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
188479604 CTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
188479669 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
188479700 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
188479765 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
188479796 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
188479861 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
188479892 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCA-GCCTTATCTCATATATA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT-AGGCCTTATCACATATATA
*
188479956 CACATTCACATTCATC
63 CACTTTCACATTCATC
188479972 GCATAAAATC
Statistics
Matches: 440, Mismatches: 17, Indels: 8
0.95 0.04 0.02
Matches are distributed among these distances:
94 137 0.31
96 258 0.59
98 44 0.10
99 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:188483184 original size:29 final size:29
Alignment explanation
Indices: 188483082--188483183 Score: 125
Period size: 29 Copynumber: 3.5 Consensus size: 29
188483072 GTGACGAGAT
188483082 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
188483111 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
188483140 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
188483169 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
188483184 GGGTTTAAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 61 0.98
30 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:188483240 original size:28 final size:28
Alignment explanation
Indices: 188483171--188483270 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
188483161 GAAGGGTATG
* * * *
188483171 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
188483201 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
188483229 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
188483258 GCACTAAGTGTGC
1 GCACTAAGTGTGC
188483271 AGATTCACTA
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 18 0.29
30 18 0.29
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:188486292 original size:40 final size:40
Alignment explanation
Indices: 188486190--188486373 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
188486180 AAATTGAATG
* * * * *
188486190 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
188486230 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
188486270 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
188486310 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
188486350 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
188486374 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:188492935 original size:40 final size:40
Alignment explanation
Indices: 188492835--188492981 Score: 174
Period size: 40 Copynumber: 3.7 Consensus size: 40
188492825 TTCGAATGAT
* * * *
188492835 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
*
188492876 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* *
188492916 ATCCGGGTTAAGTCTCGAAGGCATTTGTGCGA-TTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
188492956 A-CCGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGGCTAAGTCCCGAAGGCATTTG
188492982 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 29 0.32
40 36 0.39
41 26 0.28
42 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:188492999 original size:79 final size:81
Alignment explanation
Indices: 188492833--188493014 Score: 194
Period size: 79 Copynumber: 2.3 Consensus size: 81
188492823 TATTCGAATG
* * *
188492833 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGC
**
188492898 ATTTGTGCGAGTTACT
66 ATTTGAACGAGTTACT
* * * * * *
188492914 AAATCCGGGTTAAGTCTCGAAGGCATTTGTGC-GA-TTACTATAACCGGGCTATG-TCCCGAAGG
1 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATAACCGGACTAAGAT-CCGAAGG
188492976 CATTTGAACGAG-TAGCT
65 CATTTGAACGAGTTA-CT
* *
188492993 ATATCC-GGTTAAATTCCGAAGG
1 ATATCCGGGTTAAGTCCCGAAGG
188493015 TACGTGATTC
Statistics
Matches: 84, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
78 16 0.19
79 39 0.46
80 1 0.01
81 28 0.33
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (81 bp):
ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGC
ATTTGAACGAGTTACT
Found at i:188502171 original size:30 final size:29
Alignment explanation
Indices: 188502111--188502213 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
188502101 AAAATTGTAC
*
188502111 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
188502140 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
188502170 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
188502199 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
188502214 GATTATATAC
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:188502177 original size:59 final size:60
Alignment explanation
Indices: 188502081--188502213 Score: 205
Period size: 59 Copynumber: 2.2 Consensus size: 60
188502071 GACAAGATTG
* * *
188502081 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
* * *
188502141 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
188502200 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
188502214 GATTATATAC
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 52 0.78
60 15 0.22
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:188509703 original size:59 final size:60
Alignment explanation
Indices: 188509607--188509739 Score: 205
Period size: 59 Copynumber: 2.2 Consensus size: 60
188509597 GACAAGATTG
* * *
188509607 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
* * *
188509667 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
188509726 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
188509740 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 52 0.78
60 15 0.22
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:188509752 original size:29 final size:29
Alignment explanation
Indices: 188509637--188509739 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
188509627 AAAATTGTAC
*
188509637 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
188509666 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
188509696 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
188509725 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
188509740 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:188517237 original size:59 final size:60
Alignment explanation
Indices: 188517141--188517273 Score: 205
Period size: 59 Copynumber: 2.2 Consensus size: 60
188517131 GACAAGATTG
* * *
188517141 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
* * *
188517201 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
188517260 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
188517274 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 52 0.78
60 15 0.22
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:188517286 original size:29 final size:29
Alignment explanation
Indices: 188517171--188517273 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
188517161 AAAATTGTAC
*
188517171 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
188517200 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
188517230 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
188517259 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
188517274 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:188524491 original size:39 final size:40
Alignment explanation
Indices: 188524391--188524572 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
188524381 TCGAATGATG
* * *
188524391 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
188524431 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
188524471 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
188524509 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
188524550 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
188524573 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:188524536 original size:78 final size:80
Alignment explanation
Indices: 188524391--188524572 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
188524381 TCGAATGATG
* * * *
188524391 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
188524456 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
188524471 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
188524533 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
188524550 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
188524573 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:188533102 original size:27 final size:28
Alignment explanation
Indices: 188533041--188533110 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
188533031 AAATTTGTAC
* *
188533041 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
188533069 AGCACTAAGTGTGCGAG-CTGAATATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
*
188533096 GGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
188533111 TGATCGAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:188533149 original size:55 final size:55
Alignment explanation
Indices: 188533042--188533150 Score: 130
Period size: 55 Copynumber: 2.0 Consensus size: 55
188533032 AATTTGTACA
* * * * *
188533042 GCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTGAATATATG
1 GCACTAAGTGTGCGAGATCGAGTATATAGCACTAAGTGTGCGAACTCAATATATG
* * *
188533097 GCACTAAGTGTGCGTGATCGAGTAT-TAAGCACTATGTGTGCGAACTCTATATAT
1 GCACTAAGTGTGCGAGATCGAGTATAT-AGCACTAAGTGTGCGAACTCAATATAT
188533151 ATATTTCCGA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
54 1 0.02
55 44 0.98
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (55 bp):
GCACTAAGTGTGCGAGATCGAGTATATAGCACTAAGTGTGCGAACTCAATATATG
Found at i:188538176 original size:26 final size:27
Alignment explanation
Indices: 188538059--188538169 Score: 138
Period size: 26 Copynumber: 4.2 Consensus size: 27
188538049 ACAGGGTATA
* *
188538059 GTAATTTT-CAAACCATGGGTATTTTG
1 GTAATTTTATAAACCAAGGGTATTTTG
* *
188538085 GTAATTTTATAAACAAAGGGTATTTTA
1 GTAATTTTATAAACCAAGGGTATTTTG
* *
188538112 GTAA-TTTACAAACCAGGGGTATTTTG
1 GTAATTTTATAAACCAAGGGTATTTTG
*
188538138 GTGATTTTATAAACCAAGGGTA-TTTG
1 GTAATTTTATAAACCAAGGGTATTTTG
188538164 GTAATT
1 GTAATT
188538170 CTGTAAATTG
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
26 38 0.54
27 33 0.46
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
GTAATTTTATAAACCAAGGGTATTTTG
Found at i:188538185 original size:53 final size:53
Alignment explanation
Indices: 188538057--188538162 Score: 176
Period size: 53 Copynumber: 2.0 Consensus size: 53
188538047 CTACAGGGTA
* *
188538057 TAGTAATTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAAGGGTATTT
1 TAGTAATTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTT
* *
188538110 TAGTAATTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTT
1 TAGTAATTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTT
188538163 GGTAATTCTG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (53 bp):
TAGTAATTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTT
Found at i:188541474 original size:28 final size:28
Alignment explanation
Indices: 188541427--188541523 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
188541417 ATTTAAACCC
*
188541427 TAGGGGT-ATATT-GGTAATTTTGCTATT
1 TAGGGGTAAT-TTCGGTAATTTTGCTCTT
188541454 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
*
188541482 TAGGGGTAATTTCAGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
188541510 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
188541524 TGATCTACGC
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
27 9 0.14
28 56 0.86
ACGTcount: A:0.21, C:0.08, G:0.26, T:0.45
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:188542174 original size:27 final size:27
Alignment explanation
Indices: 188542144--188542205 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
188542134 GGGCAAAATG
188542144 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
188542171 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
188542198 GTAATTTT
1 GTAATTTT
188542206 CAAACCATGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:188542222 original size:26 final size:27
Alignment explanation
Indices: 188542188--188542310 Score: 167
Period size: 27 Copynumber: 4.6 Consensus size: 27
188542178 TACCCTACAG
*
188542188 GGGTATTTTAGTAATTTT-CAAACCAT
1 GGGTATTTTGGTAATTTTACAAACCAT
* *
188542214 GGGTATTTTGGTAATTTTATAAACAAT
1 GGGTATTTTGGTAATTTTACAAACCAT
* *
188542241 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAT
* * *
188542268 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAT
188542295 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
188542311 CTGTAAATTG
Statistics
Matches: 84, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 17 0.20
27 67 0.80
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAT
Found at i:188542324 original size:27 final size:27
Alignment explanation
Indices: 188542294--188542364 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
188542284 TTATAAACCA
* *
188542294 AGGGTATTTTGGTAATTCTGTAAATTG
1 AGGGTAATTTGGTAATTCTGTAAATCG
***
188542321 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAATTTGGTAATTCTGTAAATCG
*
188542348 -GGAGTACTTTGGTAATT
1 AGG-GTAATTTGGTAATT
188542365 TTACAAGTCG
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (27 bp):
AGGGTAATTTGGTAATTCTGTAAATCG
Found at i:188542326 original size:54 final size:54
Alignment explanation
Indices: 188542188--188542310 Score: 196
Period size: 54 Copynumber: 2.3 Consensus size: 54
188542178 TACCCTACAG
*
188542188 GGGTATTTTAGTAATTTT-CAAACCATGGGTATTTTGGTAATTTTATAAACAAT
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAT
*
188542241 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA-
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAA-CAAT
*
188542295 GGGTATTTTGGTAATT
1 GGGTATTTTAGTAATT
188542311 CTGTAAATTG
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
53 18 0.28
54 44 0.68
55 3 0.05
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAT
Found at i:188557332 original size:47 final size:47
Alignment explanation
Indices: 188557274--188557433 Score: 186
Period size: 47 Copynumber: 3.4 Consensus size: 47
188557264 AGTGAACTTG
* *
188557274 GACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCAGGAACTCG
1 GACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAGGAACTCA
* * *
188557321 GACTCAACTCAACGAGTTTGGA---C--GTTCGCATCCATAAGTGAACTCA
1 GACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCAG-GAACTCA
* *
188557367 GACTCAAGTCAACGAGTTCGGATGCCTAGTTACATCTCACGAACTCA
1 GACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAGGAACTCA
188557414 GACTCAACTCAACGAGTTCG
1 GACTCAACTCAACGAGTTCG
188557434 AACGTTCGCA
Statistics
Matches: 93, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 3 0.03
46 26 0.28
47 46 0.49
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (47 bp):
GACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAGGAACTCA
Found at i:188557349 original size:93 final size:93
Alignment explanation
Indices: 188557223--188557484 Score: 398
Period size: 93 Copynumber: 2.8 Consensus size: 93
188557213 CCATAAGCGT
** * * *
188557223 ACTCGGACTCAACTCAATAAGTTCGGGCATTCGCATCCATAAGTGAACTTGGACTCAACTCAATG
1 ACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAATG
*
188557288 AGTTCGGATGCCTAGTTACATCTCAGGA
66 AGTTCGGATGCCTAGTTACATCTCACGA
* * * *
188557316 ACTCGGACTCAACTCAACGAGTTTGGACGTTCGCATCCATAAGTGAACTCAGACTCAAGTCAACG
1 ACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAATG
188557381 AGTTCGGATGCCTAGTTACATCTCACGA
66 AGTTCGGATGCCTAGTTACATCTCACGA
* *
188557409 ACTCAGACTCAACTCAACGAGTTCGAACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAATG
1 ACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAATG
* *
188557474 GGTTCAGATGC
66 AGTTCGGATGC
188557485 TCAAATATCT
Statistics
Matches: 151, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 151 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.24
Consensus pattern (93 bp):
ACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAATG
AGTTCGGATGCCTAGTTACATCTCACGA
Found at i:188557379 original size:46 final size:46
Alignment explanation
Indices: 188557213--188557471 Score: 192
Period size: 46 Copynumber: 5.6 Consensus size: 46
188557203 TGTAACCCAC
* * * ** * *
188557213 CCATAAGCGTACTCGGACTCAACTCAATAAGTTCGGGCATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
** * *
188557259 CCATAAGTGAACTTGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* * *
188557309 -C-TCAG-GAACTCGGACTCAACTCAACGAGTTTGGACGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
188557352 CCATAAGTGAACTCAGACTCAAGTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* * *
188557402 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGAACGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
188557445 CCATAAGTGAACTCGGACTCAACTCAA
1 CCATAAGTGAACTCAGACTCAACTCAA
188557472 TGGGTTCAGA
Statistics
Matches: 170, Mismatches: 25, Indels: 36
0.74 0.11 0.16
Matches are distributed among these distances:
42 6 0.04
43 6 0.04
44 4 0.02
45 5 0.03
46 76 0.45
47 53 0.31
48 5 0.03
49 4 0.02
50 6 0.04
51 5 0.03
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:188563590 original size:40 final size:40
Alignment explanation
Indices: 188563524--188563674 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
188563514 GAATTGAATG
* *
188563524 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
188563563 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
188563603 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
188563643 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
188563675 ACATGGTTAT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 16 0.18
40 72 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:188563658 original size:80 final size:79
Alignment explanation
Indices: 188563526--188563674 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
188563516 ATTGAATGAT
*
188563526 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATT
1 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
188563591 GTGCTAGTGGCTAC
66 GTGCTAGTGGCTAC
* * * *
188563605 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
188563668 TTTGTGC
63 ATTGTGC
188563675 ACATGGTTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 16 0.26
80 45 0.74
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (79 bp):
ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
GTGCTAGTGGCTAC
Found at i:188563689 original size:80 final size:79
Alignment explanation
Indices: 188563524--188563690 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
188563514 GAATTGAATG
*
188563524 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
188563589 TTGTGCTAGTGGCT
66 TTGTGCTAATGGCT
* * * * *
188563603 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
188563666 CATTTGTGC-ACATGGTT
63 CAATTGTGCTA-ATGGCT
188563683 ATATCCGG
1 ATATCCGG
188563691 TTATATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 18 0.24
80 56 0.76
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAATGGCT
Found at i:188571612 original size:38 final size:38
Alignment explanation
Indices: 188571481--188571628 Score: 149
Period size: 40 Copynumber: 3.8 Consensus size: 38
188571471 AATTGAATGA
* * * *
188571481 TATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGATTC
* * *
188571520 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-TC
188571558 TACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATTC
1 T--ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATTC
*
188571598 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
188571629 ACGTGTTATA
Statistics
Matches: 91, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
37 1 0.01
38 28 0.31
39 17 0.19
40 44 0.48
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATTC
Found at i:188575704 original size:39 final size:40
Alignment explanation
Indices: 188575646--188575746 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
188575636 AAATTGAATG
* *
188575646 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
188575685 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
188575725 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
188575747 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:188575739 original size:40 final size:40
Alignment explanation
Indices: 188575646--188575828 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
188575636 AAATTGAATG
* * * * *
188575646 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
188575685 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
188575725 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
188575765 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
188575805 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
188575829 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.26
40 87 0.72
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:188583702 original size:39 final size:40
Alignment explanation
Indices: 188583644--188583744 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
188583634 AAATTGAATG
* *
188583644 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
188583683 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
188583723 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
188583745 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:188583737 original size:40 final size:40
Alignment explanation
Indices: 188583644--188583826 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
188583634 AAATTGAATG
* * * * *
188583644 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
188583683 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
188583723 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
188583763 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
188583803 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
188583827 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.26
40 87 0.72
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:188587398 original size:21 final size:20
Alignment explanation
Indices: 188587364--188587403 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
188587354 GTCGTTGCAA
*
188587364 ATTGATGCACATTTTAATGC
1 ATTGATGCACATTTCAATGC
*
188587384 ATTGACTGCCCATTTCAATG
1 ATTGA-TGCACATTTCAATG
188587404 GTCATTATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.38
Consensus pattern (20 bp):
ATTGATGCACATTTCAATGC
Found at i:188590701 original size:56 final size:56
Alignment explanation
Indices: 188590641--188590777 Score: 193
Period size: 56 Copynumber: 2.4 Consensus size: 56
188590631 TCCCAAACAG
* * * * *
188590641 GGTCTTACTTGCACACATATATCGGAGTCACATATCGATGCCCATGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCAATGCCAACGTATAAAACGT
* *
188590697 GGTCTTACTCGCACACAAATATCGAAGTCACATATCAATGCCAACGTATAAAATGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCAATGCCAACGTATAAAACGT
* *
188590753 GGTTTTACTCGTACACATATATCGA
1 GGTCTTACTCGCACACATATATCGA
188590778 TGCCATGGTC
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 71 1.00
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTCACATATCAATGCCAACGTATAAAACGT
Found at i:188595102 original size:29 final size:29
Alignment explanation
Indices: 188595061--188595192 Score: 192
Period size: 29 Copynumber: 4.6 Consensus size: 29
188595051 CCTCCGAACT
** * * *
188595061 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* * *
188595090 TGCACACTTAGTGCCAAATATTTCTAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
188595119 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
188595148 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
188595177 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
188595193 ATCTCGTCAC
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 92 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:188601418 original size:48 final size:48
Alignment explanation
Indices: 188601332--188601820 Score: 725
Period size: 48 Copynumber: 10.2 Consensus size: 48
188601322 CAAGATAAAT
* * * * *
188601332 ATATATATGTGTGGTAAAG-CAAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
188601379 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
* *
188601427 ATA-ATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
*
188601474 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
* * *
188601522 ATATATATATATGTGGTAAATCCGAATGGCTAACATGAAATATGTATGAG
1 --ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
* *
188601572 ATATGTATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
*
188601620 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
*
188601668 ATATATATATGTGGTAAAGCCGAATGGCTAA-ATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
* * * *
188601715 ATATATATATGCGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
* * *
188601763 ATATGTATATGTGGTAAAGCCGTATGGCTAATGTAAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
188601811 A-AGTGTATAT
1 ATA-TGTATAT
188601821 ATTGTGGCCG
Statistics
Matches: 409, Mismatches: 27, Indels: 11
0.91 0.06 0.02
Matches are distributed among these distances:
47 108 0.26
48 255 0.62
50 46 0.11
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
Found at i:188601486 original size:95 final size:96
Alignment explanation
Indices: 188601332--188601811 Score: 759
Period size: 95 Copynumber: 5.0 Consensus size: 96
188601322 CAAGATAAAT
* * *
188601332 ATATATATGTGTGGTAAAG-CAAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
188601396 AGCCGAATGGCTAATATGAAATATGTATGAG
66 AGCCGAATGGCTAATATGAAATATGTATGAG
188601427 ATA-ATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
188601491 AGCCGAATGGCTAACATGAAATATGTATGAG
66 AGCCGAATGGCTAATATGAAATATGTATGAG
* **
188601522 ATATATATATATGTGGTAAATCCGAATGGCTAACATGAAATATGTATGAGATATGTATATGTGGT
1 --ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
* *
188601587 AAATCCGAATGGCTAATGTGAAATATGTATGAG
64 AAAGCCGAATGGCTAATATGAAATATGTATGAG
* ** *
188601620 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
188601685 AGCCGAATGGCTAA-ATGAAATATGTATGAG
66 AGCCGAATGGCTAATATGAAATATGTATGAG
* *
188601715 ATATATATATGCGGTAAATCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* * *
188601780 AGCCGTATGGCTAATGTAAAATATGTATGAG
66 AGCCGAATGGCTAATATGAAATATGTATGAG
188601811 A
1 A
188601812 AGTGTATATA
Statistics
Matches: 356, Mismatches: 24, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
94 14 0.04
95 163 0.46
96 90 0.25
97 3 0.01
98 86 0.24
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (96 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATATGAAATATGTATGAG
Found at i:188602003 original size:37 final size:37
Alignment explanation
Indices: 188601953--188602023 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
188601943 GGAAATATAT
*
188601953 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
188601990 TCCGGGTAAGACCCGATAACTACGTGTGGAGATT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATT
188602024 ATTCGAGCTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:188603536 original size:30 final size:31
Alignment explanation
Indices: 188603493--188603555 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
188603483 CCTGTTCATA
188603493 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
**
188603524 TTTCAT-ATTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
188603554 TT
1 TT
188603556 ACTATAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 24 0.80
31 6 0.20
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:188603795 original size:24 final size:24
Alignment explanation
Indices: 188603748--188603869 Score: 167
Period size: 24 Copynumber: 5.0 Consensus size: 24
188603738 ACTTTATCAT
*
188603748 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
188603773 ATAACTTGGGCA-AAGCCCTTTTTTTA
1 ATAACTGGGGCATAAGCCC---TTTTA
188603799 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
188603823 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
188603847 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
188603870 GCACTTCCTC
Statistics
Matches: 89, Mismatches: 3, Indels: 11
0.86 0.03 0.11
Matches are distributed among these distances:
23 1 0.01
24 59 0.66
25 7 0.08
26 16 0.18
27 6 0.07
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:188603941 original size:9 final size:9
Alignment explanation
Indices: 188603927--188604001 Score: 62
Period size: 9 Copynumber: 7.8 Consensus size: 9
188603917 ATCTCGTGTG
188603927 CATATCATA
1 CATATCATA
*
188603936 CATATCATGTG
1 CATATCA--TA
188603947 CATATCATA
1 CATATCATA
*
188603956 CAT-TCATGTG
1 CATATCA--TA
188603966 CATATCATA
1 CATATCATA
*
188603975 CATATCATGTG
1 CATATCA--TA
188603986 CATATCATA
1 CATATCATA
188603995 CATATCA
1 CATATCA
188604002 GGTTTATCAA
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
8 3 0.06
9 27 0.51
10 4 0.08
11 19 0.36
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:188603946 original size:20 final size:20
Alignment explanation
Indices: 188603923--188604001 Score: 151
Period size: 20 Copynumber: 4.0 Consensus size: 20
188603913 GAACATCTCG
188603923 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
188603943 TGTGCATATCATACAT-TCA
1 TGTGCATATCATACATATCA
188603962 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
188603982 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
188604002 GGTTTATCAA
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
19 19 0.33
20 39 0.67
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.35
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:188603952 original size:11 final size:11
Alignment explanation
Indices: 188603923--188603993 Score: 66
Period size: 9 Copynumber: 7.1 Consensus size: 11
188603913 GAACATCTCG
188603923 TGTGCATATCA
1 TGTGCATATCA
*
188603934 --TACATATCA
1 TGTGCATATCA
188603943 TGTGCATATCA
1 TGTGCATATCA
*
188603954 --TACAT-TCA
1 TGTGCATATCA
188603962 TGTGCATATCA
1 TGTGCATATCA
*
188603973 --TACATATCA
1 TGTGCATATCA
188603982 TGTGCATATCA
1 TGTGCATATCA
188603993 T
1 T
188603994 ACATATCAGG
Statistics
Matches: 47, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
8 3 0.06
9 20 0.43
10 4 0.09
11 20 0.43
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:188603966 original size:39 final size:39
Alignment explanation
Indices: 188603923--188603997 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
188603913 GAACATCTCG
188603923 TGTGCATATCATACATATCATGTGCATATCATACATTCA
1 TGTGCATATCATACATATCATGTGCATATCATACATTCA
188603962 TGTGCATATCATACATATCATGTGCATATCATACAT
1 TGTGCATATCATACATATCATGTGCATATCATACAT
188603998 ATCAGGTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (39 bp):
TGTGCATATCATACATATCATGTGCATATCATACATTCA
Found at i:188604069 original size:25 final size:25
Alignment explanation
Indices: 188604041--188604088 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
188604031 ATATATAAAC
* * *
188604041 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
188604066 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
188604089 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:188614259 original size:68 final size:67
Alignment explanation
Indices: 188614187--188614336 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
188614177 CATCATGTGT
* * * *
188614187 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
188614249 ATGTAG
62 ATGTAG
** * *
188614255 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
188614320 AG
66 AG
188614322 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
188614337 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:188614292 original size:64 final size:64
Alignment explanation
Indices: 188614211--188614394 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
188614201 AGACATTATG
* *
188614211 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
188614275 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
188614340 AA
63 AA
* * * *
188614342 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
188614395 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:188618710 original size:68 final size:67
Alignment explanation
Indices: 188618638--188618787 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
188618628 CATCATGTGT
* * * *
188618638 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
188618700 ATGTAG
62 ATGTAG
** * *
188618706 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
188618771 AG
66 AG
188618773 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
188618788 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:188618743 original size:64 final size:64
Alignment explanation
Indices: 188618662--188618845 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
188618652 AGACATTATG
* *
188618662 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
188618726 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
188618791 AA
63 AA
* * * *
188618793 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
188618846 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:188625630 original size:29 final size:29
Alignment explanation
Indices: 188625584--188625657 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 29
188625574 GTTGAGAGAT
* * * *
188625584 TGGCACTGAGCGTACGAGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
188625613 TGGCACTAAGTGTGCGAGTTTAAAGTATA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
188625642 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
188625658 CGGCTGATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 5 0.13
29 33 0.87
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:188629488 original size:39 final size:39
Alignment explanation
Indices: 188629434--188629588 Score: 247
Period size: 39 Copynumber: 3.9 Consensus size: 39
188629424 TGTGTATGAA
*
188629434 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
188629473 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
188629512 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
188629551 TGTACGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCA
188629589 TTTGCGCGGT
Statistics
Matches: 106, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 96 0.91
40 10 0.09
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:188637491 original size:71 final size:71
Alignment explanation
Indices: 188637407--188637570 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
188637397 CGATTTGTCT
188637407 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
188637472 CTTTCA
66 CTTTCA
188637478 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
188637543 CTTTCA
66 CTTTCA
188637549 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
188637571 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:188637608 original size:71 final size:70
Alignment explanation
Indices: 188637407--188637604 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
188637397 CGATTTGTCT
* * * *
188637407 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
188637472 CTTTCA
65 CTTTCA
* * * *
188637478 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
188637543 CTTTCA
65 CTTTCA
* *
188637549 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
188637605 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:188648599 original size:40 final size:40
Alignment explanation
Indices: 188648407--188648592 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
188648397 TCGAATGATG
* * *
188648407 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
188648447 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
188648487 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
188648527 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
188648568 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
188648593 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:188648599 original size:80 final size:80
Alignment explanation
Indices: 188648407--188648625 Score: 238
Period size: 80 Copynumber: 2.8 Consensus size: 80
188648397 TCGAATGATG
* * **
188648407 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
188648471 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
* *
188648487 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
188648549 TCTGTGCGAGTTACTATAA
64 TC-GTGCGAGTTACTA-AA
* **
188648568 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
188648626 TACGTGATTC
Statistics
Matches: 119, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
79 19 0.16
80 90 0.76
81 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:188656461 original size:40 final size:40
Alignment explanation
Indices: 188656404--188656589 Score: 166
Period size: 40 Copynumber: 4.7 Consensus size: 40
188656394 TCGAATGATG
* *
188656404 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-AAGTGACTAAA
* * *
188656444 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTGACTAAA
* *
188656484 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTGACTAAA
** * * *
188656524 TCCGGGTTAAG-TCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGTGACTA-AA
* *
188656565 -CCGGGCTATG-TCCCGAAGGCATTTG
1 TCCGGACTAAGAT-CCGAAGGCATTTG
188656590 AATGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTGACTAAA
Found at i:188656541 original size:80 final size:82
Alignment explanation
Indices: 188656404--188656589 Score: 233
Period size: 80 Copynumber: 2.3 Consensus size: 82
188656394 TCGAATGATG
*
188656404 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCAT-
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATC
188656467 TCGTGCGAGTTACTA-AA
66 T-GTGCGAGTTACTATAA
* * * **
188656484 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
188656546 TCTGTGCGAGTTACTATAA
64 TCTGTGCGAGTTACTATAA
*
188656565 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
188656590 AATGAGTAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
79 2 0.02
80 79 0.86
81 11 0.12
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATC
TGTGCGAGTTACTATAA
Found at i:188662871 original size:37 final size:38
Alignment explanation
Indices: 188662777--188662905 Score: 125
Period size: 37 Copynumber: 3.4 Consensus size: 38
188662767 CGAGGTATAA
* * * * * *
188662777 AACCCAAACATAACACCAGCACGAACCCTACGAGACTTT
1 AACCCAGATATAATACCAGCATGAAGCCTACGGGA-TTT
** * *
188662816 AAACTTAGATATAATACCAGCATTAGGCCTACGGGATTT
1 -AACCCAGATATAATACCAGCATGAAGCCTACGGGATTT
**
188662855 AA-CCAGATATAATACCAGCATGAAGCCTGTGGGATTT
1 AACCCAGATATAATACCAGCATGAAGCCTACGGGATTT
188662892 AACCCAGATATAAT
1 AACCCAGATATAAT
188662906 TCTAGCATAT
Statistics
Matches: 72, Mismatches: 16, Indels: 4
0.78 0.17 0.04
Matches are distributed among these distances:
37 31 0.43
38 13 0.18
39 3 0.04
40 25 0.35
ACGTcount: A:0.39, C:0.24, G:0.16, T:0.22
Consensus pattern (38 bp):
AACCCAGATATAATACCAGCATGAAGCCTACGGGATTT
Found at i:188662913 original size:38 final size:37
Alignment explanation
Indices: 188662822--188662921 Score: 123
Period size: 37 Copynumber: 2.7 Consensus size: 37
188662812 CTTTAAACTT
**
188662822 AGATATAATACCAGCAT-TAGGCCTACGGGATTTAACC
1 AGATATAATACCAGCATATA-GCCTGTGGGATTTAACC
188662859 AGATATAATACCAGCATGA-AGCCTGTGGGATTTAACCC
1 AGATATAATACCAGCAT-ATAGCCTGTGGGATTTAA-CC
* *
188662897 AGATATAATTCTAGCATATAGCCTG
1 AGATATAATACCAGCATATAGCCTG
188662922 CGGGTCTTTA
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
37 31 0.56
38 24 0.44
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (37 bp):
AGATATAATACCAGCATATAGCCTGTGGGATTTAACC
Found at i:188664149 original size:2 final size:2
Alignment explanation
Indices: 188664132--188664167 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
188664122 AGCATCACTT
*
188664132 TA TA AA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
188664168 TCGACTTTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:188667061 original size:42 final size:42
Alignment explanation
Indices: 188666984--188667065 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
188666974 ACATGTTATC
* * *
188666984 ACATATCAAGTCAATGCCATGTCCTAGACATGGTCTTACACA
1 ACATATCAAATCAATGCCATCTCCCAGACATGGTCTTACACA
* *
188667026 ACATCTCAAATCAATGCCTTCTCCCAGACGA-GGTCTTACA
1 ACATATCAAATCAATGCCATCTCCCAGAC-ATGGTCTTACA
188667066 TGAATCTCAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 33 0.97
43 1 0.03
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (42 bp):
ACATATCAAATCAATGCCATCTCCCAGACATGGTCTTACACA
Found at i:188667214 original size:58 final size:58
Alignment explanation
Indices: 188667102--188667262 Score: 279
Period size: 58 Copynumber: 2.8 Consensus size: 58
188667092 CCACTGACCT
* *
188667102 ATCTCGCACACATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTCAATTACCG
1 ATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACCG
188667159 ATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACCG
1 ATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACCG
* *
188667217 ATCTCGCACACATAGTGCTCGGTTAAAGAAATTTGCACACACAGTG
1 ATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTG
188667263 GCTCTAATCA
Statistics
Matches: 99, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
57 26 0.26
58 73 0.74
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (58 bp):
ATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACCG
Found at i:188667254 original size:29 final size:28
Alignment explanation
Indices: 188667105--188667262 Score: 122
Period size: 29 Copynumber: 5.5 Consensus size: 28
188667095 CTGACCTATC
* * *
188667105 TCGCACACATAGTGCTCGGTTGAAGAAC
1 TCGCACACACAGTGCTCGGTTAAAGAAT
** **
188667133 TCGCACACACAGTGCCTCAATTACCG-AT
1 TCGCACACACAGTG-CTCGGTTAAAGAAT
*
188667161 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAAA-GAAT
** **
188667191 TCGCACACACAGTGCCTCAATTACCG-AT
1 TCGCACACACAGTG-CTCGGTTAAAGAAT
*
188667219 CTCGCACACATAGTGCTCGGTTAAAGAAAT
1 -TCGCACACACAGTGCTCGGTTAAAG-AAT
*
188667249 TTGCACACACAGTG
1 TCGCACACACAGTG
188667263 GCTCTAATCA
Statistics
Matches: 98, Mismatches: 24, Indels: 15
0.72 0.18 0.11
Matches are distributed among these distances:
28 29 0.30
29 59 0.60
30 10 0.10
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (28 bp):
TCGCACACACAGTGCTCGGTTAAAGAAT
Found at i:188667481 original size:43 final size:43
Alignment explanation
Indices: 188667420--188667578 Score: 230
Period size: 43 Copynumber: 3.7 Consensus size: 43
188667410 CCTTGCTCGA
** * * *
188667420 ATCACTGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACTGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACTC
*
188667463 ATCACTGGCACGAAGCCTGCTAGGCACAAAGGCCCAAATACTC
1 ATCACTGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACTC
*
188667506 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACTC
1 ATCACTGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACTC
*
188667549 ATCA-TCGGCATGAAGCCTGCTAGGCACAAA
1 ATCACT-GGCACGAAGCCTGCTAGGCACAAA
188667579 TGTAACACCC
Statistics
Matches: 105, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
43 105 1.00
ACGTcount: A:0.32, C:0.31, G:0.22, T:0.14
Consensus pattern (43 bp):
ATCACTGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACTC
Found at i:188669074 original size:79 final size:78
Alignment explanation
Indices: 188668963--188669187 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 78
188668953 GCTACTCGTT
* * *
188668963 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAGCTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGCCCGG
188669028 ATTTAGTAACTCACA
64 ATTTAGTAACTCACA
* *
188669043 CCAATGCCTTCGGGCTTAGCCCGGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCC-GGATATAGT-ACTCGCACAAATGCCTTCGGGA-CTTAGCCCG
*
188669106 GATTTAGTAACTCGCA
63 GATTTAGTAACTCACA
* * * *
188669122 CAAATGCCTTTGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCG
188669186 GA
63 GA
188669188 CATCATTCGA
Statistics
Matches: 125, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.02
79 65 0.52
80 46 0.37
81 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
TTAGTAACTCACA
Done.