Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 604 of 770
Found at i:189026055 original size:40 final size:40
Alignment explanation
Indices: 189025996--189026164 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
189025986 CGGGACTTTA
* * *
189025996 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
189026036 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
189026076 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
189026116 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
189026156 CCCGGATAT
1 CCCGGATAT
189026165 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:189033347 original size:29 final size:29
Alignment explanation
Indices: 189033308--189033386 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
189033298 CTTAATAATC
*
189033308 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
189033338 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
189033367 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
189033387 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:189035868 original size:29 final size:29
Alignment explanation
Indices: 189035836--189035967 Score: 228
Period size: 29 Copynumber: 4.5 Consensus size: 29
189035826 ATAGTGAATC
189035836 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
189035865 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
189035895 CGCACACTTAGTGCTATATATTTTCAGGT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* *
189035924 TGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
189035953 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
189035968 GTACAAATTT
Statistics
Matches: 98, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
29 69 0.70
30 29 0.30
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:189035929 original size:59 final size:58
Alignment explanation
Indices: 189035836--189035967 Score: 228
Period size: 59 Copynumber: 2.3 Consensus size: 58
189035826 ATAGTGAATC
189035836 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGCT
* * *
189035895 CGCACACTTAGTGCTATATATTTTCAGGTTGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATATTTTCAGCT
189035953 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
189035968 GTACAAATTT
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
58 24 0.34
59 46 0.66
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (58 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATATTTTCAGCT
Found at i:189037290 original size:19 final size:18
Alignment explanation
Indices: 189037266--189037301 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
189037256 CCCCCTTTTT
*
189037266 CTTTTCTTATTTTATTCCC
1 CTTTTCTT-TTTAATTCCC
189037285 CTTTTCTTTTTAATTCC
1 CTTTTCTTTTTAATTCC
189037302 TTTCTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.11, C:0.25, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTTTCTTTTTAATTCCC
Found at i:189043524 original size:29 final size:29
Alignment explanation
Indices: 189043492--189043623 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
189043482 ATAGTGAATC
189043492 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
189043521 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
189043551 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
189043580 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
189043609 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
189043624 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:189043633 original size:59 final size:59
Alignment explanation
Indices: 189043492--189043623 Score: 248
Period size: 59 Copynumber: 2.3 Consensus size: 59
189043482 ATAGTGAATC
189043492 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
*
189043551 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
189043609 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
189043624 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 24 0.33
59 48 0.67
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:189043726 original size:72 final size:71
Alignment explanation
Indices: 189043609--189043763 Score: 278
Period size: 72 Copynumber: 2.2 Consensus size: 71
189043599 ATTTTCAGTT
*
189043609 CGCACACTTAGTGCTGTACAATTTTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 CGCACACTTAGTGCCGTACAATTTTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
189043674 TTTATA
66 TTTATA
189043680 CCGCACACTTAGTGCCGTACAATTTTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCC
1 -CGCACACTTAGTGCCGTACAATTTTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCC
189043745 ATTTATA
65 ATTTATA
189043752 --CACACTTAGTGC
1 CGCACACTTAGTGC
189043764 AGACAATACC
Statistics
Matches: 82, Mismatches: 1, Indels: 3
0.95 0.01 0.03
Matches are distributed among these distances:
69 12 0.15
72 70 0.85
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.31
Consensus pattern (71 bp):
CGCACACTTAGTGCCGTACAATTTTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
TTTATA
Found at i:189045006 original size:19 final size:18
Alignment explanation
Indices: 189044982--189045017 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
189044972 CCCCCTTTTT
*
189044982 CTTTTCTTATTTTATTCCC
1 CTTTTCTT-TTTAATTCCC
189045001 CTTTTCTTTTTAATTCC
1 CTTTTCTTTTTAATTCC
189045018 TTTCTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.11, C:0.25, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTTTCTTTTTAATTCCC
Found at i:189051797 original size:66 final size:68
Alignment explanation
Indices: 189051721--189051907 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
189051711 TAGTACCACT
*
189051721 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
189051783 CACG
65 CACG
189051787 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
189051852 ATCACG
63 ATCACG
189051858 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
189051908 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:189051832 original size:71 final size:71
Alignment explanation
Indices: 189051744--189051907 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
189051734 CGATTTGTCT
189051744 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
189051809 CTTTCA
66 CTTTCA
189051815 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
189051880 CTTTCA
66 CTTTCA
189051886 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
189051908 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:189051945 original size:71 final size:70
Alignment explanation
Indices: 189051744--189051941 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
189051734 CGATTTGTCT
* * *
189051744 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
189051809 CTTTCA
65 CTTTCA
* * *
189051815 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
189051880 CTTTCA
65 CTTTCA
* *
189051886 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
189051942 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:189054548 original size:26 final size:24
Alignment explanation
Indices: 189054488--189054547 Score: 111
Period size: 24 Copynumber: 2.5 Consensus size: 24
189054478 TATCTCAAAT
189054488 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
189054512 GCACTATGTGTGCGATTTGCTATG
1 GCACTATGTGTGCGATTTACTATG
189054536 GCACTATGTGTG
1 GCACTATGTGTG
189054548 TGAACATAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.18, C:0.17, G:0.28, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:189056470 original size:17 final size:19
Alignment explanation
Indices: 189056448--189056484 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
189056438 CACAACAAAT
189056448 ATATCTCA-ACCA-AATAA
1 ATATCTCATACCATAATAA
189056465 ATATCTCATACCATAATAA
1 ATATCTCATACCATAATAA
189056484 A
1 A
189056485 CATTTGAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 4 0.22
19 6 0.33
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (19 bp):
ATATCTCATACCATAATAA
Found at i:189059484 original size:55 final size:54
Alignment explanation
Indices: 189059349--189059486 Score: 150
Period size: 55 Copynumber: 2.5 Consensus size: 54
189059339 GTTTAAGGAT
* * * ** *
189059349 ACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGGAA
1 ACCATGTAAGACCATGCCAAGGCATGGCATTGATAACTACTACAAGGCAAAGAA
* * * * * *
189059403 ATCATGTAAGACCATGTCTAGACATGGCATTGATAAACTACTATAAGGCAAAGAT
1 ACCATGTAAGACCATGCCAAGGCATGGCATTGAT-AACTACTACAAGGCAAAGAA
*
189059458 CCCATGTAAGACCATGCCAAGGCATGGCA
1 ACCATGTAAGACCATGCCAAGGCATGGCA
189059487 ATGGTGAGTT
Statistics
Matches: 66, Mismatches: 17, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
54 28 0.42
55 38 0.58
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (54 bp):
ACCATGTAAGACCATGCCAAGGCATGGCATTGATAACTACTACAAGGCAAAGAA
Found at i:189059525 original size:53 final size:53
Alignment explanation
Indices: 189059343--189059549 Score: 198
Period size: 53 Copynumber: 3.8 Consensus size: 53
189059333 CTTAGGGTTT
* * * * *
189059343 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * *
189059397 AAGGAAATCATGTAAGACCATGTCTAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * * *
189059452 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* **
189059505 AAGGATACCACGTAAGACCATATCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
189059550 TAAAAAGGAA
Statistics
Matches: 120, Mismatches: 31, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
53 44 0.37
54 37 0.31
55 39 0.32
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:189062059 original size:31 final size:31
Alignment explanation
Indices: 189062016--189062076 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
189062006 ATGGCATCGA
*
189062016 CGATGTTGTGAGAGCCAGTGTAAGACCATGG
1 CGATATTGTGAGAGCCAGTGTAAGACCATGG
189062047 CGATATTGTGAGAGCCAGTGTAAGACCATG
1 CGATATTGTGAGAGCCAGTGTAAGACCATG
189062077 TCTAGGACAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.28, C:0.16, G:0.33, T:0.23
Consensus pattern (31 bp):
CGATATTGTGAGAGCCAGTGTAAGACCATGG
Found at i:189062122 original size:48 final size:47
Alignment explanation
Indices: 189062055--189062285 Score: 196
Period size: 48 Copynumber: 4.8 Consensus size: 47
189062045 GGCGATATTG
* *
189062055 TGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATA
1 TGAG-GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATA
* * * * * *
189062103 TGTACGCTAGTGTAAGACCATGTTTGGAACATGGCATCAGCCA--CATCA
1 TG-AGGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACATTGAT-A
* * *
189062151 TGAGGGCCAGTGTAAGACCGTGTCTGGGACATGGCATCGACAATGAGA
1 TGA-GGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATA
* * * * * *
189062199 CGAGAGCTAGAGTAAGACCATGTCTGGGACATGGCATCGACCTCGACA
1 TGAG-GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATA
* * * *
189062247 TGTGAGCCAGTGTAAGACCATGTTTGGAACATAGCATCG
1 TGAG-GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
189062286 GCAATTCACC
Statistics
Matches: 146, Mismatches: 30, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
47 7 0.05
48 134 0.92
49 5 0.03
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.22
Consensus pattern (47 bp):
TGAGGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATA
Found at i:189062160 original size:127 final size:125
Alignment explanation
Indices: 189061936--189062169 Score: 321
Period size: 127 Copynumber: 1.9 Consensus size: 125
189061926 GATATGTGTA
* *
189061936 CCAGTGTAAGACCATGTTTGGGACATGACATCGGCCATGACTAGAGCTAGTGTAAGACCATGTTT
1 CCAGTGTAAGACCATGTCTAGGACATGACATCGGCCATGACTAGAGCTAGTGTAAGACCATGTTT
* ** **
189062001 GGAACATGGCATCGACGATGTTGTGAGAGCCAGTGTAAGACCATGGCGATATTGTGAGAG
66 GGAACATGGCATCGACCACATCATGAGAGCCAGTGTAAGACCATGGCGATATTGTGAGAG
*
189062061 CCAGTGTAAGACCATGTCTAGGACATGGCATCGG-CATTGA-TATGTACGCTAGTGTAAGACCAT
1 CCAGTGTAAGACCATGTCTAGGACATGACATCGGCCA-TGACTA-G-A-GCTAGTGTAAGACCAT
*
189062124 GTTTGGAACATGGCATC-AGCCACATCATGAGGGCCAGTGTAAGACC
62 GTTTGGAACATGGCATCGA-CCACATCATGAGAGCCAGTGTAAGACC
189062170 GTGTCTGGGA
Statistics
Matches: 95, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
124 4 0.04
125 35 0.37
126 2 0.02
127 54 0.57
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (125 bp):
CCAGTGTAAGACCATGTCTAGGACATGACATCGGCCATGACTAGAGCTAGTGTAAGACCATGTTT
GGAACATGGCATCGACCACATCATGAGAGCCAGTGTAAGACCATGGCGATATTGTGAGAG
Found at i:189062231 original size:96 final size:96
Alignment explanation
Indices: 189062055--189062290 Score: 280
Period size: 96 Copynumber: 2.5 Consensus size: 96
189062045 GGCGATATTG
* * * * * *
189062055 TGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTACGCTAGTGTAAGA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAGACGTAAGCTAGAGTAAGA
*
189062120 CCATGTTTGGAACATGGCATC-AGCCAC-ATCA
66 CCATGTCTGGAACATGGCATCGA-CCACGA-CA
* * *
189062151 TGAGGGCCAGTGTAAGACCGTGTCTGGGACATGGCATCGACAATGAGACG-AGAGCTAGAGTAAG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAGACGTA-AGCTAGAGTAAG
* *
189062215 ACCATGTCTGGGACATGGCATCGACCTCGACA
65 ACCATGTCTGGAACATGGCATCGACCACGACA
* * * *
189062247 TGTGAGCCAGTGTAAGACCATGTTTGGAACATAGCATCGGCAAT
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAAT
189062291 TCACCCTTTT
Statistics
Matches: 118, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
95 1 0.01
96 115 0.97
97 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.22
Consensus pattern (96 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAGACGTAAGCTAGAGTAAGA
CCATGTCTGGAACATGGCATCGACCACGACA
Found at i:189066548 original size:46 final size:45
Alignment explanation
Indices: 189066481--189066655 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
189066471 TGTAACCCGC
*
189066481 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * *
189066527 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCG-CAT
*** * **
189066575 --ATCTCTCGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
*
189066620 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
189066656 ATGCCCAAAC
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
45 3 0.03
46 67 0.64
47 31 0.30
48 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:189066617 original size:93 final size:93
Alignment explanation
Indices: 189066489--189066660 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
189066479 GCCCATAAGT
* ** *
189066489 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
189066554 CGAGCTCGGATGCCTAGTTATATCTCTC
66 CGAGCTCGGATGCCTAGTTATATCTCTC
*
189066582 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
189066647 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
189066661 CAAACATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTATATCTCTC
Found at i:189066675 original size:46 final size:46
Alignment explanation
Indices: 189066532--189066675 Score: 125
Period size: 46 Copynumber: 3.1 Consensus size: 46
189066522 CGCATCCATA
* * *
189066532 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTATATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * * *
189066581 --CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCG--GATGCCCATACATCCT
*
189066625 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
189066671 AGTGA
1 AGTGA
189066676 CATGTCACTT
Statistics
Matches: 73, Mismatches: 16, Indels: 15
0.70 0.15 0.14
Matches are distributed among these distances:
44 8 0.11
46 32 0.44
47 29 0.40
49 4 0.05
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:189072582 original size:48 final size:48
Alignment explanation
Indices: 189072511--189072793 Score: 280
Period size: 48 Copynumber: 5.9 Consensus size: 48
189072501 ACATTTGGGT
* * *
189072511 GATATGTGTGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCCAC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * * * * *
189072559 GATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATTGGCAAT
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * * *
189072607 GTTGTGAGAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGACCAC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
** * * *
189072655 -ATCATGAGAGCCAGTGTAAGACTGTGTCTGGGACATGGCATCAGCAAT
1 GAT-ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * * * * *
189072703 GAGACGAGAGCTAGTGTAAGACCATGTCTAGGACATAGCATCGGCCTC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * * * * *
189072751 GACATGTGAGCCAGTGTAAAACCATGTTTGGAACATAGCATCG
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
189072794 ACAATTCACC
Statistics
Matches: 186, Mismatches: 47, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
47 1 0.01
48 184 0.99
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
Found at i:189072691 original size:96 final size:97
Alignment explanation
Indices: 189072520--189072792 Score: 329
Period size: 96 Copynumber: 2.8 Consensus size: 97
189072510 TGATATGTGT
* *
189072520 GCCAGTGTAAGACCATATCTGGGACATGGCATCGGCCACGAT-ATGAGAGCTAGTGTAAGACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATCATGAGAGCCAGTGTAAGACCAT
* ** * *
189072584 GTTTGGAACATGGCATTGGCAATGTTG-TGAGA
66 GTCTGGAACATGGCATCAGCAATG-AGACGAGA
* * **
189072616 GCCAGTGTAAGACCATGTCTGGGATATGGCATCGACCAC-ATCATGAGAGCCAGTGTAAGACTGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATCATGAGAGCCAGTGTAAGACCAT
*
189072680 GTCTGGGACATGGCATCAGCAATGAGACGAGA
66 GTCTGGAACATGGCATCAGCAATGAGACGAGA
* * * * * *
189072712 GCTAGTGTAAGACCATGTCTAGGACATAGCATCGGCCTCGA-CATGTGAGCCAGTGTAAAACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATCATGAGAGCCAGTGTAAGACCAT
* *
189072776 GTTTGGAACATAGCATC
66 GTCTGGAACATGGCATC
189072793 GACAATTCAC
Statistics
Matches: 149, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
95 3 0.02
96 145 0.97
97 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (97 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATCATGAGAGCCAGTGTAAGACCAT
GTCTGGAACATGGCATCAGCAATGAGACGAGA
Found at i:189072792 original size:144 final size:144
Alignment explanation
Indices: 189072520--189072795 Score: 331
Period size: 144 Copynumber: 1.9 Consensus size: 144
189072510 TGATATGTGT
* * * *
189072520 GCCAGTGTAAGACCATATCTGGGACATGGCATCGGCCACGATATGAGAGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATATCTGGGACATGGCATCAGCAACGAGACGAGAGCTAGTGTAAGACCATG
* * * *** * * * *
189072585 TTTGGAACATGGCATTGGCAATGTTGTGAGAGCCAGTGTAAGACCATGTCTGGGATATGGCATCG
66 TTAGGAACATAGCATCGGCAATGACATGAGAGCCAGTGTAAAACCATGTCTGGAACATAGCATCG
189072650 ACCACATCATGAGA
131 ACCACATCATGAGA
** * *
189072664 GCCAGTGTAAGACTGTGTCTGGGACATGGCATCAGCAATGAGACGAGAGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATATCTGGGACATGGCATCAGCAACGAGACGAGAGCTAGTGTAAGACCATG
* * *
189072729 TCTAGG-ACATAGCATCGGC-CTCGACATGTGAGCCAGTGTAAAACCATGTTTGGAACATAGCAT
66 T-TAGGAACATAGCATCGGCAAT-GACATGAGAGCCAGTGTAAAACCATGTCTGGAACATAGCAT
189072792 CGAC
129 CGAC
189072796 AATTCACCCT
Statistics
Matches: 109, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
143 1 0.01
144 105 0.96
145 3 0.03
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (144 bp):
GCCAGTGTAAGACCATATCTGGGACATGGCATCAGCAACGAGACGAGAGCTAGTGTAAGACCATG
TTAGGAACATAGCATCGGCAATGACATGAGAGCCAGTGTAAAACCATGTCTGGAACATAGCATCG
ACCACATCATGAGA
Found at i:189076286 original size:17 final size:18
Alignment explanation
Indices: 189076244--189076292 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
189076234 AGTTGAAAAG
189076244 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
189076263 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
189076280 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
189076293 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:189077180 original size:40 final size:39
Alignment explanation
Indices: 189077114--189077279 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
189077104 AAATTGAATG
* * *
189077114 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGG-TATT
* * **
189077153 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
*
189077192 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-G-TATT
* * **
189077232 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT-ATT
189077272 ATATCCGG
1 ATATCCGG
189077280 TTATATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
Found at i:189089098 original size:28 final size:29
Alignment explanation
Indices: 189089055--189089126 Score: 137
Period size: 28 Copynumber: 2.5 Consensus size: 29
189089045 GTGACGAGAT
189089055 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
189089084 TGGCACT-AGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
189089112 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
189089127 GAGCTCGAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
28 28 0.67
29 14 0.33
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:189089142 original size:29 final size:29
Alignment explanation
Indices: 189089110--189089186 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 29
189089100 GCTGGAAATA
* *
189089110 TATGGCACTAAGTGTGCGAGCTCGAAGGG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
** * * *
189089139 TATGGCACTGTGTGTGCGGGCTTAAATCG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
*
189089168 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
189089187 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.18, G:0.35, T:0.25
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAGCTCAAAGCG
Found at i:189096985 original size:29 final size:29
Alignment explanation
Indices: 189096952--189097111 Score: 162
Period size: 29 Copynumber: 5.6 Consensus size: 29
189096942 GTGACGAGAT
189096952 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
189096981 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
189097010 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
189097039 CGGCACTGGGTGT-CGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
189097067 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
189097096 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
189097112 AAATCGAGTA
Statistics
Matches: 110, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
28 21 0.19
29 89 0.81
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:189100203 original size:28 final size:29
Alignment explanation
Indices: 189100134--189100230 Score: 97
Period size: 28 Copynumber: 3.3 Consensus size: 29
189100124 GACAAGATTG
*
189100134 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-AAATTGTACA
* * *
189100164 GCACTAAGTGTGCGAGTTT-GATTTTATA
1 GCACTAAGTGTGCGAGTTTAAATTGTACA
* * * * *
189100192 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTTTAAATTGTACA
189100221 GCACTAAGTG
1 GCACTAAGTG
189100231 CGCGGATTCA
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
28 23 0.40
29 16 0.28
30 18 0.32
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTAAATTGTACA
Found at i:189107993 original size:29 final size:29
Alignment explanation
Indices: 189107951--189108080 Score: 219
Period size: 29 Copynumber: 4.5 Consensus size: 29
189107941 AAAATTGTAC
189107951 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
189107980 AGCACTAAGTGTGCGAACTG-AAA-ATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
189108007 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATAT
*
189108037 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
189108066 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
189108081 GATTCACTAT
Statistics
Matches: 97, Mismatches: 1, Indels: 6
0.93 0.01 0.06
Matches are distributed among these distances:
27 23 0.24
28 6 0.06
29 40 0.41
30 28 0.29
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:189108058 original size:57 final size:58
Alignment explanation
Indices: 189107951--189108080 Score: 219
Period size: 57 Copynumber: 2.3 Consensus size: 58
189107941 AAAATTGTAC
189107951 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTG-AAA-ATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
* *
189108007 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAACTGAAAATATAT
189108066 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
189108081 GATTCACTAT
Statistics
Matches: 69, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
56 23 0.33
57 24 0.35
58 3 0.04
59 19 0.28
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:189108067 original size:86 final size:87
Alignment explanation
Indices: 189107921--189108080 Score: 259
Period size: 86 Copynumber: 1.9 Consensus size: 87
189107911 GACAAGATTG
* * *
189107921 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
189107986 AAGTGTGCGAACTGAAAATATA
66 AAGTGTGCGAACTGAAAATATA
* * *
189108008 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
189108072 AAGTGTGCG
66 AAGTGTGCG
189108081 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
86 52 0.78
87 15 0.22
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.25
Consensus pattern (87 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAACTGAAAATATA
Found at i:189115922 original size:29 final size:29
Alignment explanation
Indices: 189115866--189115957 Score: 152
Period size: 29 Copynumber: 3.2 Consensus size: 29
189115856 GTGACGAGAT
189115866 TGGCACTAAGTGTG--TGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
189115893 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
189115922 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
189115951 CGGCACT
1 TGGCACT
189115958 GGTGTGCGAG
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 13 0.22
29 47 0.78
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:189115992 original size:57 final size:57
Alignment explanation
Indices: 189115862--189115993 Score: 164
Period size: 57 Copynumber: 2.4 Consensus size: 57
189115852 TACGGTGACG
* *
189115862 AGAT-TGGCACTAAGTGTG-TGCTGGAAATATATGGCACTGAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCTGCTGGAAATATACGGCACTGAGTGTGCATGCTCGAA
*
189115917 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTG-GTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGC-TGCTGGAAATATACGGCACTGAGTGTGC-ATGCTCGAA
* * *
189115974 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
189115994 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
55 3 0.05
56 14 0.21
57 28 0.42
58 21 0.32
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.27
Consensus pattern (57 bp):
AGATATGGCACTAAGTGTGCTGCTGGAAATATACGGCACTGAGTGTGCATGCTCGAA
Found at i:189126682 original size:20 final size:20
Alignment explanation
Indices: 189126657--189126694 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
189126647 GTTTATTCGC
*
189126657 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
189126677 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
189126695 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:189129952 original size:18 final size:18
Alignment explanation
Indices: 189129931--189129965 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
189129921 ACTGCTACTT
189129931 CTACATCTACCTCTATGG
1 CTACATCTACCTCTATGG
* *
189129949 CTACGTCTATCTCTATG
1 CTACATCTACCTCTATG
189129966 TTAATTGGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.31, G:0.11, T:0.37
Consensus pattern (18 bp):
CTACATCTACCTCTATGG
Found at i:189131615 original size:40 final size:40
Alignment explanation
Indices: 189131507--189131716 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
189131497 CGGGATTTAA
* * * * *
189131507 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
189131547 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
189131587 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
189131627 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
189131667 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
189131707 CCGGATATAT
1 CCGGATATAT
189131717 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:189139751 original size:40 final size:40
Alignment explanation
Indices: 189139643--189139852 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
189139633 CGGGATTTAA
* * * * *
189139643 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
189139683 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
189139723 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
189139763 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
189139803 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
189139843 CCGGATATAT
1 CCGGATATAT
189139853 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:189148400 original size:30 final size:30
Alignment explanation
Indices: 189148364--189148429 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
189148354 AATCGTAAAT
*
189148364 TTTGGCATTAAGTGT-ACGATTTAAACTAGC
1 TTTGGCACTAAGTGTGA-GATTTAAACTAGC
*
189148394 TTTGGCACTAAGTGTGAGATTTAAATTAGC
1 TTTGGCACTAAGTGTGAGATTTAAACTAGC
189148424 TTTGGC
1 TTTGGC
189148430 TACTTGAGGC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
30 32 0.97
31 1 0.03
ACGTcount: A:0.27, C:0.12, G:0.23, T:0.38
Consensus pattern (30 bp):
TTTGGCACTAAGTGTGAGATTTAAACTAGC
Found at i:189151699 original size:28 final size:29
Alignment explanation
Indices: 189151643--189151735 Score: 143
Period size: 29 Copynumber: 3.2 Consensus size: 29
189151633 GTGACGAGAT
189151643 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
189151672 TGGCACTAAGTGT-CGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* *
189151700 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
189151729 CGGCACT
1 TGGCACT
189151736 GGGTGTGCGA
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
28 27 0.47
29 31 0.53
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:189151748 original size:29 final size:29
Alignment explanation
Indices: 189151643--189151748 Score: 135
Period size: 29 Copynumber: 3.7 Consensus size: 29
189151633 GTGACGAGAT
189151643 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTGGAAATATA
*
189151672 TGGCACTAAGTGT-CGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
189151700 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* **
189151729 CGGCACTGGGTGTGCGAGCT
1 TGGCACTAAGTGTGCGAGCT
189151749 CGGAGGGTAT
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
28 26 0.39
29 41 0.61
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:189155590 original size:46 final size:46
Alignment explanation
Indices: 189155427--189155600 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
189155417 TATTGGGCAT
* *
189155427 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
189155473 CCGAAC-CGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
189155517 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
189155565 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
189155601 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 9, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
44 3 0.03
45 21 0.19
46 47 0.43
47 21 0.19
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:189158574 original size:15 final size:15
Alignment explanation
Indices: 189158535--189158614 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
189158525 GTATCTTGGG
*
189158535 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
189158550 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
189158565 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
189158580 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
189158595 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
189158609 TTTCTT
1 TTTCTT
189158615 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:189158604 original size:30 final size:30
Alignment explanation
Indices: 189158526--189158613 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
189158516 CATAGTATCG
* * *
189158526 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
189158556 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
189158586 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
189158614 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:189161051 original size:46 final size:46
Alignment explanation
Indices: 189160998--189161173 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
189160988 TATTTGGGCA
189160998 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
189161044 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
189161091 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
189161137 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
189161174 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:189161153 original size:93 final size:93
Alignment explanation
Indices: 189160994--189161165 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
189160984 GGGATATTTG
* *
189160994 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
189161059 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
189161087 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
189161152 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
189161166 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:189164867 original size:29 final size:29
Alignment explanation
Indices: 189164839--189164940 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
189164829 CCTCCGAGCT
** * * *
189164839 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
189164868 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
189164897 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
189164926 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
189164941 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:189172730 original size:29 final size:29
Alignment explanation
Indices: 189172702--189172803 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
189172692 CCTCCGAGCT
** * * *
189172702 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
189172731 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
189172760 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
189172789 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
189172804 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:189177601 original size:21 final size:20
Alignment explanation
Indices: 189177562--189177601 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
189177552 TGGTCCGTAA
*
189177562 GCCCATTGGGCCCAGTTTTG
1 GCCCATTGGGCCCACTTTTG
*
189177582 GCCCATTGAGGCCCTCTTTT
1 GCCCATTG-GGCCCACTTTT
189177602 TCTAAAGTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.10, C:0.33, G:0.25, T:0.33
Consensus pattern (20 bp):
GCCCATTGGGCCCACTTTTG
Found at i:189181008 original size:40 final size:40
Alignment explanation
Indices: 189180964--189181190 Score: 336
Period size: 40 Copynumber: 5.7 Consensus size: 40
189180954 GCTACTTGAT
*
189180964 CAAATGCCTTCGGGACTTAGCTCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
189181004 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
189181044 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
189181084 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCAG-A
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTC-GCA
** * *
189181124 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
189181163 CAAATGCCTTCGGGA-ATAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
189181191 CATCCGAATA
Statistics
Matches: 172, Mismatches: 10, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
38 4 0.02
39 36 0.21
40 131 0.76
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:189187368 original size:27 final size:27
Alignment explanation
Indices: 189187337--189187388 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
189187327 TGTATTAGTC
189187337 GGAATGGAGGTTGTGGAACAGCCGTCG
1 GGAATGGAGGTTGTGGAACAGCCGTCG
189187364 GGAATGGAGGTTGTGGAACAGCCGT
1 GGAATGGAGGTTGTGGAACAGCCGT
189187389 ATTAGTTCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.13, G:0.44, T:0.19
Consensus pattern (27 bp):
GGAATGGAGGTTGTGGAACAGCCGTCG
Found at i:189189139 original size:40 final size:40
Alignment explanation
Indices: 189189066--189189289 Score: 361
Period size: 40 Copynumber: 5.7 Consensus size: 40
189189056 GCTACTTGCT
189189066 CAAATGCCTTCGGGAC-TA-CCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
189189104 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
189189144 CAAATGCCTTCGGGACTTAGCCCGG--ATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
189189182 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
189189222 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
189189261 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
189189290 CATCCGAATA
Statistics
Matches: 175, Mismatches: 4, Indels: 12
0.92 0.02 0.06
Matches are distributed among these distances:
38 55 0.31
39 36 0.21
40 83 0.47
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:189189173 original size:78 final size:79
Alignment explanation
Indices: 189189066--189189289 Score: 366
Period size: 78 Copynumber: 2.9 Consensus size: 79
189189056 GCTACTTGCT
189189066 CAAATGCCTTCGGGAC-TA-CCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
189189129 TTATAGTAACTCGCA
65 TTATAGTAACTCGCA
*
189189144 CAAATGCCTTCGGGACTTAGCCCGG-ATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
189189208 TATAGTAACTCGCA
66 TATAGTAACTCGCA
* * *
189189222 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
189189286 TTAT
65 TTAT
189189290 CATCCGAATA
Statistics
Matches: 138, Mismatches: 4, Indels: 7
0.93 0.03 0.05
Matches are distributed among these distances:
77 10 0.07
78 83 0.60
79 40 0.29
80 5 0.04
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
TATAGTAACTCGCA
Found at i:189193554 original size:12 final size:12
Alignment explanation
Indices: 189193470--189193555 Score: 59
Period size: 12 Copynumber: 6.8 Consensus size: 12
189193460 TGATACACAA
*
189193470 AAATAATATAAGG
1 AAAT-ATATAATG
189193483 AAATATATAATG
1 AAATATATAATG
189193495 AAATATATAAAAT-
1 AAATATAT--AATG
* *
189193508 ATAATTTATAGATA
1 A-AATATATA-ATG
*
189193522 AAATATACAAAT-
1 AAATATA-TAATG
189193534 AAATAATATAATG
1 AAAT-ATATAATG
189193547 AAATATATA
1 AAATATATA
189193556 TAAACAAAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
12 28 0.47
13 21 0.35
14 11 0.18
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.31
Consensus pattern (12 bp):
AAATATATAATG
Found at i:189193571 original size:27 final size:26
Alignment explanation
Indices: 189193483--189193571 Score: 76
Period size: 27 Copynumber: 3.3 Consensus size: 26
189193473 TAATATAAGG
*
189193483 AAATATATAATGAAATATATAAAATAT
1 AAATA-ATAATGAAATATATAAAATAA
* *
189193510 AATTTATAGAT-AAA-ATATACAAATAA
1 AAATAATA-ATGAAATATATA-AAATAA
*
189193536 ATAAT-ATAATGAAATATATATAAACAA
1 A-AATAATAATGAAATATATA-AAATAA
189193563 AAATAATAA
1 AAATAATAA
189193572 CTAATAAAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
25 7 0.14
26 21 0.42
27 22 0.44
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.30
Consensus pattern (26 bp):
AAATAATAATGAAATATATAAAATAA
Found at i:189195294 original size:131 final size:131
Alignment explanation
Indices: 189195060--189195354 Score: 464
Period size: 131 Copynumber: 2.3 Consensus size: 131
189195050 AGTATTTTTG
*
189195060 ATCTGCTCTCTGCTAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAA
1 ATCTGCTCTCTGCCAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAA
* *
189195125 AGCCAAATCAGCTATGGCTTCGATCTGCTCTCCGCCAATACAAAGATGCCAAATATGTTATCTTC
66 AGCCAAATCAGCTATGGCTTCGATCTGCTCTCCACCAATACAAAGATGCCAAATATGGTATCTTC
189195190 A
131 A
* * * * *
189195191 ATCTGCTCTCCGCCAATACAGAGACGCCAAATTATCTTAGATTTGCTTTAATGTAAACACGTGAA
1 ATCTGCTCTCTGCCAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAA
* * * *
189195256 AGCCAAATCAGCTATGTCTTCGATCTGCTCTCCACCAATACAGAGATGTCAAATTTGGTATCTTC
66 AGCCAAATCAGCTATGGCTTCGATCTGCTCTCCACCAATACAAAGATGCCAAATATGGTATCTTC
*
189195321 G
131 A
*
189195322 ATCTGCTCTCTGACAATACAGAGATGCCAAATC
1 ATCTGCTCTCTGCCAATACAGAGATGCCAAATC
189195355 TACTATCTTC
Statistics
Matches: 147, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
131 147 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (131 bp):
ATCTGCTCTCTGCCAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAA
AGCCAAATCAGCTATGGCTTCGATCTGCTCTCCACCAATACAAAGATGCCAAATATGGTATCTTC
A
Found at i:189195362 original size:44 final size:44
Alignment explanation
Indices: 189195142--189195364 Score: 138
Period size: 44 Copynumber: 5.1 Consensus size: 44
189195132 TCAGCTATGG
* * * **
189195142 CTTCGATCTGCTCTCCGCCAATACAAAGATGCCAAATATGTTAT
1 CTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTACTAT
* * *
189195186 CTTCAATCTGCTCTCCGCCAATACAGAGACGCCAAA--T--TAT
1 CTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTACTAT
* * * ** * * *
189195226 CTTAGATTTGCTTTAATG-TAA-ACACGTGAAAGCCAAATC-AGCTATGT
1 CTTCGATCTGCTCT-CCGACAATACA-GAG-ATGCCAAATCTA-CTA--T
* * **
189195273 CTTCGATCTGCTCTCC-ACCAATACAGAGATGTCAAATTTGGTAT
1 CTTCGATCTGCTCTCCGA-CAATACAGAGATGCCAAATCTACTAT
*
189195317 CTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTACTAT
1 CTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTACTAT
189195361 CTTC
1 CTTC
189195365 AACTTGTTCC
Statistics
Matches: 135, Mismatches: 29, Indels: 30
0.70 0.15 0.15
Matches are distributed among these distances:
39 3 0.02
40 17 0.13
41 8 0.06
42 1 0.01
44 75 0.56
45 3 0.02
46 9 0.07
47 16 0.12
48 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (44 bp):
CTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTACTAT
Found at i:189195413 original size:131 final size:128
Alignment explanation
Indices: 189195295--189195745 Score: 519
Period size: 132 Copynumber: 3.4 Consensus size: 128
189195285 CTCCACCAAT
* * * * * * *
189195295 ACAGAGATGTCAAATTTGGTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTACTA
1 ACAG-GATGTCAGATCTGCTATCTTCGATCTGTTCCCT-A-AAAACAGGGATGCCAAATCTACTA
*
189195360 TCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCCTCAATCTGCTT-CATTGTA
63 TCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTGCTTCCA--GTA
189195424 AGC
126 AGC
* * *
189195427 ACAGGAGTGTCAGATCTGTTATCTTCAATCTGTTCCCTATAAACATAGGGATGCCAAATCTACTA
1 ACAGGA-TGTCAGATCTGCTATCTTCGATCTGTTCCCTA-AAA-ACAGGGATGCCAAATCTACTA
* * *
189195492 TCTTCAACTTGTTCCCTATAAACACAAGGATGCCATGCTGAAATCTTTAATCTGCTTCGCTGTAA
63 TCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTGCTTC-CAGTAA
189195557 GC
127 GC
* *
189195559 ACAGGAATGTCAGATCTGCTAT-TTTGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTA
1 ACAGG-ATGTCAGATCTGCTATCTTCGATCTGTTCCCTA-AAA-ACAGGGATGCCAAATCTACTA
* * * * *
189195623 TCTTCAACTTGTTCCCTATAAACTCAGGGATGCCATGCTAAAATCTTCGATCTGCTTTGCTGTAA
63 TCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTGC-TTCCAGTAA
189195688 GC
127 GC
** * *
189195690 ACATAAATGTCAGATCTGCTATCTTTGATCTGTTCCCTATAAACATAGGGATGCCA
1 ACA-GGATGTCAGATCTGCTATCTTCGATCTGTTCCCTA-AAA-ACAGGGATGCCA
189195746 TGCTGAAATC
Statistics
Matches: 283, Mismatches: 28, Indels: 16
0.87 0.09 0.05
Matches are distributed among these distances:
131 120 0.42
132 161 0.57
133 1 0.00
134 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (128 bp):
ACAGGATGTCAGATCTGCTATCTTCGATCTGTTCCCTAAAAACAGGGATGCCAAATCTACTATCT
TCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTGCTTCCAGTAAGC
Found at i:189195544 original size:132 final size:132
Alignment explanation
Indices: 189195344--189195745 Score: 644
Period size: 132 Copynumber: 3.1 Consensus size: 132
189195334 ACAATACAGA
*
189195344 GATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCCTCA
1 GATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCA
** * * **
189195409 ATCTGCTTCATTGTAAGCACAGGAGTGTCAGATCTGTTATCTTCAATCTGTTCCCTATAAACATA
66 ATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTTGATCTGTTCCCTATAAACATA
189195474 GG
131 GG
* *
189195476 GATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAACACAAGGATGCCATGCTGAAATCTTTA
1 GATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCA
*
189195541 ATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTAT-TTTGATCTGTTCCCTATAAACACA
66 ATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTTGATCTGTTCCCTATAAACATA
189195605 GG
131 GG
* * * *
189195607 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACTCAGGGATGCCATGCTAAAATCTTCG
1 GATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCA
* **
189195672 ATCTGCTTTGCTGTAAGCACATAAATGTCAGATCTGCTATCTTTGATCTGTTCCCTATAAACATA
66 ATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTTGATCTGTTCCCTATAAACATA
189195737 GG
131 GG
189195739 GATGCCA
1 GATGCCA
189195746 TGCTGAAATC
Statistics
Matches: 249, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
131 119 0.48
132 130 0.52
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (132 bp):
GATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCA
ATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTTGATCTGTTCCCTATAAACATA
GG
Found at i:189195839 original size:132 final size:132
Alignment explanation
Indices: 189195703--189195984 Score: 408
Period size: 132 Copynumber: 2.1 Consensus size: 132
189195693 TAAATGTCAG
*
189195703 ATCTGCTATCTTTGATCTGTTCCCTATAAACATAGGGATGCCATGCTGAAATCTTCGATCTGCTT
1 ATCTGCTATCTTTGATCTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTT
* * * * * * *
189195768 CGCTGTAAGCATAGGAATGTCAGATCTGTTATCTTTGATTTGTTCCCTATAAACATAGGGATGCC
66 CGCTATAAGCACAAGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCC
189195833 AA
131 AA
* *
189195835 ATCTGCTAT-TCTCGA-CTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTTGATCTGC
1 ATCTGCTATCT-TTGATC-TGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGC
*
189195898 TTCGCTATAAGCACAAGAGTGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATG
64 TTCGCTATAAGCACAAGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATG
189195963 CCAA
129 CCAA
*
189195967 ATCTTG-TTTCTTTGATCT
1 ATC-TGCTATCTTTGATCT
189195985 ACATTGTCCC
Statistics
Matches: 132, Mismatches: 13, Indels: 10
0.85 0.08 0.06
Matches are distributed among these distances:
131 2 0.02
132 126 0.95
133 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.34
Consensus pattern (132 bp):
ATCTGCTATCTTTGATCTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTT
CGCTATAAGCACAAGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCC
AA
Found at i:189195897 original size:220 final size:219
Alignment explanation
Indices: 189195484--189195965 Score: 745
Period size: 220 Copynumber: 2.2 Consensus size: 219
189195474 GGGATGCCAA
* * * *
189195484 ATCTACTATCTTC-AACTTGTTCCCTATAAACACAAGGATGCCATGCTGAAATCTTTAATCTGCT
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTGCT
189195548 TCGCTGTAAGCACAGGAATGTCAGATCTGCTATTTTGATCTGTTCCCTATAAACACAGGGATGCC
65 TCGCTGTAAGCACAGGAATGTCAGATCTGCTATTTTGATCTGTTCCCTATAAACACAGGGATGCC
*
189195613 AAATCTGCTATCTTCAACTTGTTCCCTATAAACTCAGGGATGCCATGCTAAAATCTTCGATCTGC
130 AAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGC
* *
189195678 TTTGCTGTAAGCACATA-AATGTCAG
195 TTCGCTATAAGCACA-AGAATGTCAG
* * *
189195703 ATCTGCTATCTTTGATCTGTTCCCTATAAACATAGGGATGCCATGCTGAAATCTTCGATCTGCTT
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTGCTT
* * * *
189195768 CGCTGTAAGCATAGGAATGTCAGATCTGTTATCTTTGATTTGTTCCCTATAAACATAGGGATGCC
66 CGCTGTAAGCACAGGAATGTCAGATCTGCTAT-TTTGATCTGTTCCCTATAAACACAGGGATGCC
* * *
189195833 AAATCTGCTAT-TCTCGACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTTGATCTG
130 AAATCTGCTATCT-TCAACTTGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTG
*
189195897 CTTCGCTATAAGCACAAGAGTGTCAG
194 CTTCGCTATAAGCACAAGAATGTCAG
189195923 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCA
189195966 AATCTTGTTT
Statistics
Matches: 239, Mismatches: 20, Indels: 7
0.90 0.08 0.03
Matches are distributed among these distances:
219 87 0.36
220 152 0.64
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.32
Consensus pattern (219 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTGCTT
CGCTGTAAGCACAGGAATGTCAGATCTGCTATTTTGATCTGTTCCCTATAAACACAGGGATGCCA
AATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCT
TCGCTATAAGCACAAGAATGTCAG
Found at i:189195984 original size:44 final size:43
Alignment explanation
Indices: 189195369--189195984 Score: 340
Period size: 44 Copynumber: 14.0 Consensus size: 43
189195359 ATCTTCAACT
** * **
189195369 TGTTCCCTATAAACACAGGGATGCC-ATGCTGAAATCCTCAATC
1 TGTTCCCTATAAACACAGGGATGCCAAT-CTGCTATCTTTGATC
** * * * * **
189195412 TGCTTCATTGTAAGCACA-GGAGTGTCAGATCTGTTATCTTCAATC
1 TG-TTCCCTATAAACACAGGGA-TGCCA-ATCTGCTATCTTTGATC
* * * *
189195457 TGTTCCCTATAAACATAGGGATGCCAAATCTACTATC-TTCAAC
1 TGTTCCCTATAAACACAGGGATGCC-AATCTGCTATCTTTGATC
* ** *
189195500 TTGTTCCCTATAAACACAAGGATGCC-ATGCTGAAATCTTTAATC
1 -TGTTCCCTATAAACACAGGGATGCCAAT-CTGCTATCTTTGATC
* * * * *
189195544 TGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTAT-TTTGATC
1 TG-TTCCCTATAAACACAGGGATGCCA-ATCTGCTATCTTTGATC
* *
189195588 TGTTCCCTATAAACACAGGGATGCCAAATCTGCTATC-TTCAAC
1 TGTTCCCTATAAACACAGGGATGCC-AATCTGCTATCTTTGATC
* *** *
189195631 TTGTTCCCTATAAACTCAGGGATGCC-ATGCTAAAATCTTCGATC
1 -TGTTCCCTATAAACACAGGGATGCCAAT-CTGCTATCTTTGATC
** * * *** *
189195675 TGCTTTGCTGTAAGCACATAAATGTCAGATCTGCTATCTTTGATC
1 TG-TTCCCTATAAACACAGGGATGCCA-ATCTGCTATCTTTGATC
* ** *
189195720 TGTTCCCTATAAACATAGGGATGCC-ATGCTGAAATCTTCGATC
1 TGTTCCCTATAAACACAGGGATGCCAAT-CTGCTATCTTTGATC
* * * * * * * *
189195763 TGCTTCGCTGTAAGCATAGGAATGTCAGATCTGTTATCTTTGATT
1 TG-TTCCCTATAAACACAGGGATGCCA-ATCTGCTATCTTTGATC
* *
189195808 TGTTCCCTATAAACATAGGGATGCCAAATCTGCTAT-TCTCGA-C
1 TGTTCCCTATAAACACAGGGATGCC-AATCTGCTATCT-TTGATC
**
189195851 TTGTTCCCTATAAACACAGGGATGCC-ATGCTGAAATCTTTGATC
1 -TGTTCCCTATAAACACAGGGATGCCAAT-CTGCTATCTTTGATC
* * * * *
189195895 TGCTTCGCTATAAGCACA-AGAGTGTCAGATCTGCTATCTTCGATC
1 TG-TTCCCTATAAACACAGGGA-TGCCA-ATCTGCTATCTTTGATC
*
189195940 TGTTCCCTATAAACACAGGGATGCCAAATCTTG-TTTCTTTGATC
1 TGTTCCCTATAAACACAGGGATGCC-AATC-TGCTATCTTTGATC
189195984 T
1 T
189195985 ACATTGTCCC
Statistics
Matches: 428, Mismatches: 108, Indels: 73
0.70 0.18 0.12
Matches are distributed among these distances:
42 8 0.02
43 80 0.19
44 261 0.61
45 69 0.16
46 10 0.02
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (43 bp):
TGTTCCCTATAAACACAGGGATGCCAATCTGCTATCTTTGATC
Found at i:189196874 original size:8 final size:8
Alignment explanation
Indices: 189196858--189196941 Score: 59
Period size: 8 Copynumber: 10.4 Consensus size: 8
189196848 GCCTCTCCAG
*
189196858 TTTCCTTT
1 TTTCTTTT
189196866 TTTC-TTT
1 TTTCTTTT
*
189196873 TTTCTCTT
1 TTTCTTTT
189196881 TTTCTTTT
1 TTTCTTTT
189196889 TTT-TTTT
1 TTTCTTTT
*
189196896 TTT-TTTCA
1 TTTCTTT-T
189196904 TTTCTTTT
1 TTTCTTTT
189196912 TCCCTT-TTTCT
1 T---TTCTTT-T
189196923 TTTCTTTT
1 TTTCTTTT
*
189196931 TTCCTTTT
1 TTTCTTTT
189196939 TTT
1 TTT
189196942 TGAAATAGAA
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
7 17 0.27
8 32 0.52
9 6 0.10
10 3 0.05
11 4 0.06
ACGTcount: A:0.01, C:0.18, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTCTTTT
Found at i:189196886 original size:6 final size:6
Alignment explanation
Indices: 189196872--189196931 Score: 52
Period size: 6 Copynumber: 9.8 Consensus size: 6
189196862 CTTTTTTCTT
* * *
189196872 TTTTCTC TTTTTC TTTTTT TTTTTT TTTTTC -ATTTC TTTTTCCC TTTTTC
1 TTTT-TC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTT--C TTTTTC
189196922 -TTTTC TTTTT
1 TTTTTC TTTTT
189196932 TCCTTTTTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
5 9 0.20
6 26 0.58
7 4 0.09
8 6 0.13
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTC
Found at i:189196894 original size:19 final size:20
Alignment explanation
Indices: 189196865--189196939 Score: 95
Period size: 19 Copynumber: 4.0 Consensus size: 20
189196855 CAGTTTCCTT
189196865 TTTTCTTTTTTCTCTTTTTC
1 TTTTCTTTTTTCTCTTTTTC
*
189196885 TTTT-TTTTTT-TTTTTTTC
1 TTTTCTTTTTTCTCTTTTTC
* *
189196903 ATTTC-TTTTTCCCTTTTTC
1 TTTTCTTTTTTCTCTTTTTC
189196922 TTTTCTTTTTTC-CTTTTT
1 TTTTCTTTTTTCTCTTTTT
189196940 TTTGAAATAG
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
18 15 0.32
19 22 0.47
20 10 0.21
ACGTcount: A:0.01, C:0.17, G:0.00, T:0.81
Consensus pattern (20 bp):
TTTTCTTTTTTCTCTTTTTC
Found at i:189196907 original size:23 final size:24
Alignment explanation
Indices: 189196863--189196912 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
189196853 TCCAGTTTCC
*
189196863 TTTTTTCTTTTTTCTCTTTTTCTT
1 TTTTTTCTTTTTTCTCTATTTCTT
* *
189196887 TTTTTTTTTTTTTTTC-ATTTCTT
1 TTTTTTCTTTTTTCTCTATTTCTT
189196910 TTT
1 TTT
189196913 CCCTTTTTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 9 0.39
24 14 0.61
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.86
Consensus pattern (24 bp):
TTTTTTCTTTTTTCTCTATTTCTT
Found at i:189196911 original size:11 final size:10
Alignment explanation
Indices: 189196866--189196931 Score: 52
Period size: 9 Copynumber: 6.9 Consensus size: 10
189196856 AGTTTCCTTT
189196866 TTTCTTTTT-
1 TTTCTTTTTC
*
189196875 TCTCTTTTTC
1 TTTCTTTTTC
189196885 TTT-TTTTT-
1 TTTCTTTTTC
*
189196893 TTTTTTTTTC
1 TTTCTTTTTC
189196903 ATTTCTTTTTC
1 -TTTCTTTTTC
*
189196914 --CCTTTTTC
1 TTTCTTTTTC
189196922 TTTTCTTTTT
1 -TTTCTTTTT
189196932 TCCTTTTTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
8 10 0.22
9 18 0.40
10 2 0.04
11 15 0.33
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTCTTTTTC
Found at i:189199577 original size:16 final size:14
Alignment explanation
Indices: 189199536--189199588 Score: 56
Period size: 14 Copynumber: 3.7 Consensus size: 14
189199526 TTTATAATCT
*
189199536 TGAATGCAAATG-G
1 TGAATGCAAATGCA
189199549 TGCAATG-AAATGCTA
1 TG-AATGCAAATGC-A
189199564 TGAGATGCAAATGCA
1 TGA-ATGCAAATGCA
189199579 TGAATGCAAA
1 TGAATGCAAA
189199589 AAGTATCGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
13 7 0.21
14 12 0.35
15 9 0.26
16 6 0.18
ACGTcount: A:0.42, C:0.11, G:0.25, T:0.23
Consensus pattern (14 bp):
TGAATGCAAATGCA
Found at i:189203562 original size:28 final size:28
Alignment explanation
Indices: 189203501--189203598 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
189203491 TCACAAATTG
** * *
189203501 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
189203530 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
189203558 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
189203586 GCACTAAGTGTGC
1 GCACTAAGTGTGC
189203599 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:189211242 original size:28 final size:28
Alignment explanation
Indices: 189211181--189211278 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
189211171 TCACAAATTG
** * *
189211181 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
189211210 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
189211238 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
189211266 GCACTAAGTGTGC
1 GCACTAAGTGTGC
189211279 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:189215376 original size:15 final size:15
Alignment explanation
Indices: 189215356--189215424 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
189215346 GTATCTTGGG
189215356 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
189215371 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
189215386 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
189215401 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
189215416 TTTCTTTAT
1 TTTCTTTAT
189215425 TCAGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:189215425 original size:30 final size:30
Alignment explanation
Indices: 189215347--189215426 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
189215337 CATAGTATCG
* * *
189215347 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
* *
189215377 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
189215407 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
189215427 AGTTTTCTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 1 0.02
30 41 0.95
31 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:189217409 original size:46 final size:46
Alignment explanation
Indices: 189217356--189217528 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
189217346 TTGGGCATCT
*
189217356 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAGGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * *
189217402 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCC
* * * *
189217449 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * *
189217495 GAGCTCGTTCAGTTGAGTCTGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
189217529 GTGGGTTTCA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.58
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:189217509 original size:93 final size:93
Alignment explanation
Indices: 189217349--189217520 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
189217339 GGGATATTTG
* * * *
189217349 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAGGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAGGCGAACGCCCGAACTCGTTCAG
189217414 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
189217442 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTCAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAGGCGAACGCCCGAACTCGTTCAG
*
189217507 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
189217521 ACTTATGGGT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAGGCGAACGCCCGAACTCGTTCAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:189219475 original size:26 final size:22
Alignment explanation
Indices: 189219423--189219477 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 22
189219413 ATAATTAATT
*
189219423 AATAATAAAATAATGTATATTT
1 AATAATAAAATAATGTATATTG
*
189219445 TATAATAAAATAGATGTAATATATGG
1 AATAATAAAATA-ATGT-ATAT-T-G
189219471 AATAATA
1 AATAATA
189219478 CATGGTAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 11 0.42
23 4 0.15
24 4 0.15
25 1 0.04
26 6 0.23
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (22 bp):
AATAATAAAATAATGTATATTG
Found at i:189219817 original size:27 final size:26
Alignment explanation
Indices: 189219773--189219901 Score: 87
Period size: 25 Copynumber: 5.2 Consensus size: 26
189219763 TAATATAAGG
*
189219773 AAAT-ATATAATGAAATATATAAAAT
1 AAATAATATAATAAAATATATAAAAT
* *
189219798 ATAAT-TTATAGATAAAATATA-CAAAT
1 A-AATAATATA-ATAAAATATATAAAAT
*
189219824 AAATAATATAATGAAATATATATAAAT
1 AAATAATATAATAAAATATATA-AAAT
*
189219851 AAAT-A-A-AAT-AACTA-ATAAAAAT
1 AAATAATATAATAAAATATAT-AAAAT
* * *
189219873 AAATGATATAA-AAAGTATTTAAAAT
1 AAATAATATAATAAAATATATAAAAT
189219898 AAAT
1 AAAT
189219902 TTAAAAAATA
Statistics
Matches: 84, Mismatches: 9, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
22 10 0.12
23 6 0.07
24 4 0.05
25 29 0.35
26 18 0.21
27 17 0.20
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.31
Consensus pattern (26 bp):
AAATAATATAATAAAATATATAAAAT
Found at i:189219844 original size:12 final size:12
Alignment explanation
Indices: 189219760--189219845 Score: 59
Period size: 12 Copynumber: 6.8 Consensus size: 12
189219750 ATGATACACA
*
189219760 AAATAATATAAGG
1 AAAT-ATATAATG
189219773 AAATATATAATG
1 AAATATATAATG
189219785 AAATATATAAAAT-
1 AAATATAT--AATG
* *
189219798 ATAATTTATAGATA
1 A-AATATATA-ATG
*
189219812 AAATATACAAAT-
1 AAATATA-TAATG
189219824 AAATAATATAATG
1 AAAT-ATATAATG
189219837 AAATATATA
1 AAATATATA
189219846 TAAATAAATA
Statistics
Matches: 60, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
12 28 0.47
13 21 0.35
14 11 0.18
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.31
Consensus pattern (12 bp):
AAATATATAATG
Found at i:189219882 original size:64 final size:64
Alignment explanation
Indices: 189219742--189219886 Score: 158
Period size: 64 Copynumber: 2.3 Consensus size: 64
189219732 TTACAAATTC
* * *
189219742 AATAAATGATGATACACAAAATAATATAAGGAAATATATAATGAAATATATAAAATATAATTTAT
1 AATAAATGAT-ATACAAAAAATAATATAAGGAAATATATAATGAAATAAATAAAATATAA-TTAA
189219807 A
64 A
* *
189219808 GATAAA--ATATACAAATAAATAATATAATGAAATATAT-AT-AAATAAATAAAATAACTAA-TA
1 AATAAATGATATACAAA-AAATAATATAAGGAAATATATAATGAAATAAATAAAAT-A-TAATTA
189219868 AA
63 AA
189219870 AATAAATGATATA-AAAA
1 AATAAATGATATACAAAA
189219887 GTATTTAAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
62 21 0.31
63 12 0.18
64 30 0.44
66 5 0.07
ACGTcount: A:0.63, C:0.03, G:0.06, T:0.28
Consensus pattern (64 bp):
AATAAATGATATACAAAAAATAATATAAGGAAATATATAATGAAATAAATAAAATATAATTAAA
Found at i:189223780 original size:2 final size:2
Alignment explanation
Indices: 189223726--189223764 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
189223716 AATTGGTTTT
189223726 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
189223765 GTGTTGTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:189224084 original size:28 final size:28
Alignment explanation
Indices: 189224044--189224100 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
189224034 TTTTCAGAAT
189224044 TAAGACATCTGTCTCCAATCTTGAACAA
1 TAAGACATCTGTCTCCAATCTTGAACAA
189224072 TAAGACATCTGTCTCCAATCTTGAACAA
1 TAAGACATCTGTCTCCAATCTTGAACAA
189224100 T
1 T
189224101 CTTGAACAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.25, G:0.11, T:0.30
Consensus pattern (28 bp):
TAAGACATCTGTCTCCAATCTTGAACAA
Found at i:189225292 original size:19 final size:19
Alignment explanation
Indices: 189225269--189225315 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
189225259 ATTTAATCTA
*
189225269 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
189225287 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
189225307 ATTTTTATT
1 ATTTTTATT
189225316 TTAATATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:189226630 original size:37 final size:38
Alignment explanation
Indices: 189226580--189226656 Score: 129
Period size: 38 Copynumber: 2.1 Consensus size: 38
189226570 TTAAGGCAGA
*
189226580 GAAGAAAAGAGTTAA-GGAAATGGAGAGGATTAGAAAT
1 GAAGAAAAGAGTTAAGGGAAATGGAGAGAATTAGAAAT
*
189226617 GAAGAAAATAGTTAAGGGAAATGGAGAGAATTAGAAAT
1 GAAGAAAAGAGTTAAGGGAAATGGAGAGAATTAGAAAT
189226655 GA
1 GA
189226657 TCCAAACATA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
37 14 0.38
38 23 0.62
ACGTcount: A:0.52, C:0.00, G:0.31, T:0.17
Consensus pattern (38 bp):
GAAGAAAAGAGTTAAGGGAAATGGAGAGAATTAGAAAT
Found at i:189228323 original size:40 final size:41
Alignment explanation
Indices: 189228279--189228376 Score: 114
Period size: 40 Copynumber: 2.4 Consensus size: 41
189228269 TCGATTGTTC
* * **
189228279 TCGGGACATAGCCCGG-TTATAGTGA-TTTGCACAATTGCCT
1 TCGGGACATAGCCCGGATT-TAGTAACTTAGCACAAACGCCT
189228319 TCGGGA-ATTAGCCCGGATTTAGTAACTTAGCACAAACGCCT
1 TCGGGACA-TAGCCCGGATTTAGTAACTTAGCACAAACGCCT
189228360 TCGGGAC-TAGCCCGGAT
1 TCGGGACATAGCCCGGAT
189228377 ACCATTCGAA
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
39 1 0.02
40 29 0.58
41 20 0.40
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (41 bp):
TCGGGACATAGCCCGGATTTAGTAACTTAGCACAAACGCCT
Found at i:189228896 original size:29 final size:29
Alignment explanation
Indices: 189228859--189229339 Score: 835
Period size: 29 Copynumber: 16.7 Consensus size: 29
189228849 TGTTGAAAAA
* *
189228859 CTCGTACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
*
189228888 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
*
189228917 -TCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
189228945 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
189228974 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
189229003 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
189229032 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
189229061 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
189229090 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
189229119 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
189229148 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
189229177 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
189229206 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
189229235 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* *
189229264 CTCGCACACATAGTGCCTCGATTACTGGT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* *
189229293 CTCGCACACATAGTG-CTCGGTTAAC-GAAT
1 CTCGCACACACAGTGCCTCGATT-ACTG-AT
*
189229322 -TTGCACACACAGTGCCTC
1 CTCGCACACACAGTGCCTC
189229340 TAATCATTCG
Statistics
Matches: 438, Mismatches: 10, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
28 47 0.11
29 391 0.89
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCGATTACTGAT
Found at i:189231402 original size:36 final size:37
Alignment explanation
Indices: 189231352--189231428 Score: 147
Period size: 36 Copynumber: 2.1 Consensus size: 37
189231342 TATAAAAGAA
189231352 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
189231389 GTCTTA-CCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
189231425 GTCT
1 GTCT
189231429 CGCCCGGAAC
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 34 0.85
37 6 0.15
ACGTcount: A:0.21, C:0.31, G:0.19, T:0.29
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:189231591 original size:49 final size:49
Alignment explanation
Indices: 189231531--189231652 Score: 210
Period size: 49 Copynumber: 2.5 Consensus size: 49
189231521 CATATATTTT
*
189231531 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
189231580 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
189231629 ACATC-GCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
189231653 CATATATGTA
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
48 18 0.26
49 52 0.74
ACGTcount: A:0.30, C:0.34, G:0.10, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:189237452 original size:28 final size:27
Alignment explanation
Indices: 189237385--189237454 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
189237375 TACTCGATCA
* * *
189237385 CGCACACTTAGTGCCATATATTCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
*
189237412 CACACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
189237440 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
189237455 GTACAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 20 0.54
28 17 0.46
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:189238830 original size:19 final size:21
Alignment explanation
Indices: 189238792--189238831 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
189238782 TCCACACCCA
189238792 TTTTTTTTCATCATTATCTTTT
1 TTTTTTTTCA-CATTATCTTTT
189238814 TTTTTTTTC-CATT-TCTTT
1 TTTTTTTTCACATTATCTTT
189238832 ATTCTCCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 4 0.22
22 9 0.50
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTTTTTTCACATTATCTTTT
Found at i:189240647 original size:30 final size:29
Alignment explanation
Indices: 189240612--189240685 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
189240602 CTTCGAGCTC
* *
189240612 GCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACCCAGTGCCATA-TATTTCCAGCAT
**
189240642 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
189240671 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
189240686 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 26 0.65
30 14 0.35
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.28
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:189242458 original size:27 final size:27
Alignment explanation
Indices: 189242437--189242604 Score: 212
Period size: 27 Copynumber: 6.2 Consensus size: 27
189242427 ATAGGCTAAC
*
189242437 ATTACTGAAATACCCTTGTAGGGTAGA
1 ATTACCGAAATACCCTTGTAGGGTAGA
** *
189242464 ATTACTAAAATACCCCTGTAGGGTAGA
1 ATTACCGAAATACCCTTGTAGGGTAGA
*
189242491 ATTACCGAAATACCCTTGTAAGGTAGA
1 ATTACCGAAATACCCTTGTAGGGTAGA
*
189242518 AATACCGAAATACCCTTGTAGGGTAGA
1 ATTACCGAAATACCCTTGTAGGGTAGA
* * *
189242545 ATTACTGAAATACTCC-TGTAAGGTAAA
1 ATTACCGAAATAC-CCTTGTAGGGTAGA
* * *
189242572 ATTACCGAGATACCCTTGTGGGGTAAA
1 ATTACCGAAATACCCTTGTAGGGTAGA
189242599 ATTACC
1 ATTACC
189242605 ATTTTACCCC
Statistics
Matches: 123, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.02
27 119 0.97
28 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
ATTACCGAAATACCCTTGTAGGGTAGA
Found at i:189242940 original size:2 final size:2
Alignment explanation
Indices: 189242933--189242962 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
189242923 GCTTCGCCAC
189242933 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
189242963 CTGTTCTGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:189243011 original size:27 final size:26
Alignment explanation
Indices: 189242959--189243018 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
189242949 ATATATATAT
*
189242959 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
189242985 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
189243012 ATATCTG
1 ATATCTG
189243019 GCAGCTTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:189243172 original size:31 final size:31
Alignment explanation
Indices: 189243137--189243216 Score: 106
Period size: 31 Copynumber: 2.6 Consensus size: 31
189243127 TTGCATTCAC
* * *
189243137 ATTCTGATTTTGATTCTGTTACCTGATAATG
1 ATTCTGATTCTGATTCTGTCACCTGATAATA
* **
189243168 ATTCTGATTCTAATTCTGTCACCTGATTCTA
1 ATTCTGATTCTGATTCTGTCACCTGATAATA
189243199 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
189243217 ATTCTGATTC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATAATA
Found at i:189243175 original size:6 final size:6
Alignment explanation
Indices: 189243166--189243304 Score: 124
Period size: 6 Copynumber: 22.7 Consensus size: 6
189243156 TACCTGATAA
* * *
189243166 TGATTC TGATTC TAATTC TG-TCACC TGATTC TAATTC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC TGATTC
* *
189243215 TGATTC TGATTC TG-TCACC TGATTC TGATTC TGATTC TGATTC TG-TCACC
1 TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC TGATTC TGAT--TC
* *
189243265 TGATTC TGATTC TGATTC TCATTT TGATTC T-AGTTC TGAT
1 TGATTC TGATTC TGATTC TGATTC TGATTC TGA-TTC TGAT
189243305 AATATTTCTT
Statistics
Matches: 108, Mismatches: 14, Indels: 22
0.75 0.10 0.15
Matches are distributed among these distances:
5 4 0.04
6 91 0.84
7 10 0.09
8 3 0.03
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.47
Consensus pattern (6 bp):
TGATTC
Found at i:189243195 original size:19 final size:19
Alignment explanation
Indices: 189243171--189243247 Score: 82
Period size: 19 Copynumber: 3.8 Consensus size: 19
189243161 GATAATGATT
189243171 CTGATTCTAATTCTGTCAC
1 CTGATTCTAATTCTGTCAC
*
189243190 CTGATTCTAATTCTGATTCTGATT
1 CTGATTCTAATTCTG--TC--A-C
*
189243214 CTGATTCTGATTCTGTCAC
1 CTGATTCTAATTCTGTCAC
*
189243233 CTGATTCTGATTCTG
1 CTGATTCTAATTCTG
189243248 ATTCTGATTC
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 30 0.60
20 1 0.02
21 2 0.04
22 2 0.04
23 1 0.02
24 14 0.28
ACGTcount: A:0.18, C:0.22, G:0.14, T:0.45
Consensus pattern (19 bp):
CTGATTCTAATTCTGTCAC
Found at i:189243206 original size:43 final size:43
Alignment explanation
Indices: 189243166--189243259 Score: 170
Period size: 43 Copynumber: 2.2 Consensus size: 43
189243156 TACCTGATAA
189243166 TGATTCTGATTCTAATTCTGTCACCTGATTCTAATTCTGATTC
1 TGATTCTGATTCTAATTCTGTCACCTGATTCTAATTCTGATTC
* *
189243209 TGATTCTGATTCTGATTCTGTCACCTGATTCTGATTCTGATTC
1 TGATTCTGATTCTAATTCTGTCACCTGATTCTAATTCTGATTC
189243252 TGATTCTG
1 TGATTCTG
189243260 TCACCTGATT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.47
Consensus pattern (43 bp):
TGATTCTGATTCTAATTCTGTCACCTGATTCTAATTCTGATTC
Found at i:189243207 original size:37 final size:37
Alignment explanation
Indices: 189243166--189243295 Score: 158
Period size: 37 Copynumber: 3.5 Consensus size: 37
189243156 TACCTGATAA
* *
189243166 TGATTCTGATTCTAATTCTGTCACCTGATTCTAATTC
1 TGATTCTGATTCTGATTCTGTCACCTGATTCTGATTC
* *
189243203 TGATTCTGATTCTGATTCTG--ATTCTG-TCACCTGATTC
1 TGATTCTGATTCTGATTCTGTCA-CCTGAT--TCTGATTC
189243240 TGATTCTGATTCTGATTCTGTCACCTGATTCTGATTC
1 TGATTCTGATTCTGATTCTGTCACCTGATTCTGATTC
* *
189243277 TGATTCTCATTTTGATTCT
1 TGATTCTGATTCTGATTCT
189243296 AGTTCTGATA
Statistics
Matches: 79, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
35 2 0.03
36 3 0.04
37 69 0.87
38 3 0.04
39 2 0.03
ACGTcount: A:0.18, C:0.21, G:0.14, T:0.48
Consensus pattern (37 bp):
TGATTCTGATTCTGATTCTGTCACCTGATTCTGATTC
Found at i:189243237 original size:31 final size:31
Alignment explanation
Indices: 189243202--189243283 Score: 164
Period size: 31 Copynumber: 2.6 Consensus size: 31
189243192 GATTCTAATT
189243202 CTGATTCTGATTCTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGATTCTGTCAC
189243233 CTGATTCTGATTCTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGATTCTGTCAC
189243264 CTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCT
189243284 CATTTTGATT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.16, C:0.22, G:0.16, T:0.46
Consensus pattern (31 bp):
CTGATTCTGATTCTGATTCTGATTCTGTCAC
Found at i:189243252 original size:74 final size:74
Alignment explanation
Indices: 189243131--189243295 Score: 249
Period size: 74 Copynumber: 2.2 Consensus size: 74
189243121 TTGGGATTGC
* * *
189243131 ATTCACATTCTGATTTTGATTCTGTTACCTGATAATGATTCTGATTCTAATTCTGTCACCTGATT
1 ATTCTCATTCTGATTCTGATTCTGTCACCTGATAATGATTCTGATTCTAATTCTGTCACCTGATT
189243196 CTAATTCTG
66 CTAATTCTG
* ** *
189243205 ATTCTGATTCTGATTCTGATTCTGTCACCTGATTCTGATTCTGATTCTGATTCTGTCACCTGATT
1 ATTCTCATTCTGATTCTGATTCTGTCACCTGATAATGATTCTGATTCTAATTCTGTCACCTGATT
*
189243270 CTGATTCTG
66 CTAATTCTG
*
189243279 ATTCTCATTTTGATTCT
1 ATTCTCATTCTGATTCT
189243296 AGTTCTGATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
74 81 1.00
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.47
Consensus pattern (74 bp):
ATTCTCATTCTGATTCTGATTCTGTCACCTGATAATGATTCTGATTCTAATTCTGTCACCTGATT
CTAATTCTG
Found at i:189250519 original size:40 final size:40
Alignment explanation
Indices: 189250482--189250667 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
189250472 GCTACTCGTT
**
189250482 CAAATGCCTTCGGGACATGGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
189250522 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
189250562 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* ** * * *
189250602 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAAC-TCGCA
* *
189250643 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
189250668 CATCATTCGA
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:189251380 original size:2 final size:2
Alignment explanation
Indices: 189251373--189251400 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
189251363 ATGTGCAAAC
189251373 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
189251401 GTGCAAGAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:189258575 original size:40 final size:40
Alignment explanation
Indices: 189258512--189258695 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
189258502 GCTACTCGTT
*
189258512 CAAATG-CTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
189258551 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
189258591 CAAATGCCTTCGGGACTTA-CCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
189258630 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
189258671 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
189258696 CATCATTCGA
Statistics
Matches: 132, Mismatches: 7, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
38 3 0.02
39 41 0.31
40 75 0.57
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:189258614 original size:79 final size:81
Alignment explanation
Indices: 189258512--189258695 Score: 254
Period size: 79 Copynumber: 2.3 Consensus size: 81
189258502 GCTACTCGTT
*
189258512 CAAATG-CTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
189258574 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
**
189258591 CAAATGCCTTCGGGACTTA-CCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
*
189258655 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
189258671 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
189258696 CATCATTCGA
Statistics
Matches: 94, Mismatches: 6, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
78 3 0.03
79 64 0.68
80 27 0.29
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:189260358 original size:12 final size:12
Alignment explanation
Indices: 189260343--189260367 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
189260333 AAACCACTTC
189260343 CGACTAGGGTCA
1 CGACTAGGGTCA
189260355 CGACTAGGGTCA
1 CGACTAGGGTCA
189260367 C
1 C
189260368 TTTAGGACTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.28, G:0.32, T:0.16
Consensus pattern (12 bp):
CGACTAGGGTCA
Found at i:189265811 original size:40 final size:40
Alignment explanation
Indices: 189265745--189265911 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
189265735 AAATTGAATG
* * *
189265745 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
189265784 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
189265824 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
189265864 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
189265904 ATATCCGG
1 ATATCCGG
189265912 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:189273861 original size:80 final size:79
Alignment explanation
Indices: 189273729--189273877 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
189273719 ATTGAATGAT
*
189273729 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATT
1 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
189273794 GTGCTAGTGGCTAC
66 GTGCTAGTGGCTAC
* * * *
189273808 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
189273871 TTTGTGC
63 ATTGTGC
189273878 ACGTGATTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 16 0.26
80 45 0.74
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (79 bp):
ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
GTGCTAGTGGCTAC
Found at i:189273891 original size:40 final size:40
Alignment explanation
Indices: 189273727--189273893 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
189273717 AAATTGAATG
* * *
189273727 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGAGATT
* * * **
189273766 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAGATT
* *
189273806 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGAGATT
* * *
189273846 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GAGATT
189273886 ATATCCGG
1 ATATCCGG
189273894 TTATATTCCG
Statistics
Matches: 102, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 17 0.17
40 83 0.81
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAGATT
Found at i:189273892 original size:80 final size:79
Alignment explanation
Indices: 189273727--189273893 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
189273717 AAATTGAATG
*
189273727 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
189273792 TTGTGCTAGTGGCT
66 TTGTGCTAGTGACT
* * * * *
189273806 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
189273869 CATTTGTGC-ACGTGATT
63 CAATTGTGCTA-GTGACT
189273886 ATATCCGG
1 ATATCCGG
189273894 TTATATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 18 0.24
80 56 0.76
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGACT
Found at i:189281853 original size:80 final size:79
Alignment explanation
Indices: 189281721--189281869 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
189281711 ATTGAATGAT
*
189281721 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATT
1 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
189281786 GTGCTAGTGGCTAC
66 GTGCTAGTGGCTAC
* * * *
189281800 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
189281863 TTTGTGC
63 ATTGTGC
189281870 ACGTGATTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 16 0.26
80 45 0.74
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (79 bp):
ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
GTGCTAGTGGCTAC
Found at i:189281883 original size:40 final size:40
Alignment explanation
Indices: 189281719--189281885 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
189281709 AAATTGAATG
* * *
189281719 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGAGATT
* * * **
189281758 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAGATT
* *
189281798 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGAGATT
* * *
189281838 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GAGATT
189281878 ATATCCGG
1 ATATCCGG
189281886 TTATATTCCG
Statistics
Matches: 102, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 17 0.17
40 83 0.81
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAGATT
Found at i:189281884 original size:80 final size:79
Alignment explanation
Indices: 189281719--189281885 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
189281709 AAATTGAATG
*
189281719 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
189281784 TTGTGCTAGTGGCT
66 TTGTGCTAGTGACT
* * * * *
189281798 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
189281861 CATTTGTGC-ACGTGATT
63 CAATTGTGCTA-GTGACT
189281878 ATATCCGG
1 ATATCCGG
189281886 TTATATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 18 0.24
80 56 0.76
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGACT
Found at i:189289800 original size:40 final size:40
Alignment explanation
Indices: 189289715--189289865 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
189289705 AATTGAATGA
* * *
189289715 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
189289755 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
189289796 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
189289835 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
189289866 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:189289879 original size:40 final size:40
Alignment explanation
Indices: 189289751--189289881 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
189289741 TATGCTGGAA
* * *
189289751 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
189289791 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
189289831 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
189289871 ATTATATCCGG
1 ATTATATCCGG
189289882 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:189297777 original size:40 final size:40
Alignment explanation
Indices: 189297718--189297869 Score: 157
Period size: 40 Copynumber: 3.8 Consensus size: 40
189297708 AAATTGAATG
* *
189297718 ATATCCGGGCTAA-ATCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGA-CCCGAAGGCAATTGTGCTGGAAATT
* * ****
189297758 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
*
189297798 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
189297838 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
189297870 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
39 3 0.03
40 86 0.93
41 3 0.03
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:189297883 original size:40 final size:40
Alignment explanation
Indices: 189297755--189297885 Score: 165
Period size: 40 Copynumber: 3.3 Consensus size: 40
189297745 TATGCTGGAA
* * *
189297755 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * **
189297795 GCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
189297835 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
189297875 ATTATATCCGG
1 ATTATATCCGG
189297886 TTATATTCCG
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:189302300 original size:6 final size:6
Alignment explanation
Indices: 189302270--189302338 Score: 61
Period size: 6 Copynumber: 11.3 Consensus size: 6
189302260 ACGAAACATT
* * * *
189302270 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATTCGGTG A-CAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA A-TCAG-A ATCAGA ATCAGA
189302319 ATCAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
189302339 TAGGTGACAG
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
5 2 0.04
6 43 0.86
7 4 0.08
8 1 0.02
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:189302313 original size:37 final size:36
Alignment explanation
Indices: 189302272--189302372 Score: 121
Period size: 37 Copynumber: 2.7 Consensus size: 36
189302262 GAAACATTAT
* *
189302272 CAGAACTAGAATCAAAATGAGAATCAGAATTCGGTGA
1 CAGAA-TAGAATCAAAATCAGAATCAGAATTAGGTGA
*
189302309 CAGAATCAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAAT-AGAATCAAAATCAGAATCAGAATTAGGTGA
* * *
189302346 CAGAATTTGAATCAGAATCAGTATCAG
1 CAGAA-TAGAATCAAAATCAGAATCAG
189302373 GTAACGAAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
36 1 0.02
37 55 0.96
38 1 0.02
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.21
Consensus pattern (36 bp):
CAGAATAGAATCAAAATCAGAATCAGAATTAGGTGA
Done.