Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 606 of 770
Found at i:189684396 original size:80 final size:81
Alignment explanation
Indices: 189684298--189684476 Score: 227
Period size: 80 Copynumber: 2.2 Consensus size: 81
189684288 GCTCGATTGT
* * * * *
189684298 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAG
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGAATTGA-CCCGGATTTAG
* *
189684362 TAAC-TCGCACAAATGC
65 TAACTTAGCACAAAAGC
* * *
189684378 CTTCGGGACTTAACCCGGTTTTCGTAACTCACACAAATGCCTTCGGGAATTGACCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGAATTGACCCGGATTTAGT
*
189684443 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
*
189684459 CTTCGAGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
189684477 ATACCATTCG
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
80 57 0.68
81 27 0.32
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGAATTGACCCGGATTTAGT
AACTTAGCACAAAAGC
Found at i:189684476 original size:41 final size:41
Alignment explanation
Indices: 189684298--189684478 Score: 176
Period size: 40 Copynumber: 4.5 Consensus size: 41
189684288 GCTCGATTGT
* * *
189684298 CTTCGGGACA-TAGCCCGG-TTATAGTGA-TTCGCACAATTGC
1 CTTCGGGA-ATTAGCCCGGATT-TAGTAACTTAGCACAAATGC
*
189684338 CTTCGGGAATTAGCCCGGATTTAGTAAC-TCGCACAAATGC
1 CTTCGGGAATTAGCCCGGATTTAGTAACTTAGCACAAATGC
* * * * *
189684378 CTTCGGGACTTAACCCGGTTTTCGTAACTCA-CACAAATGC
1 CTTCGGGAATTAGCCCGGATTTAGTAACTTAGCACAAATGC
* *
189684418 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGAATTAG-CCCGGATTTAGTAACTTAGCACAAATGC
* *
189684459 CTTCGAGACTTAGCCCGGAT
1 CTTCGGGAATTAGCCCGGAT
189684479 ACCATTCGAA
Statistics
Matches: 117, Mismatches: 17, Indels: 13
0.80 0.12 0.09
Matches are distributed among these distances:
39 1 0.01
40 89 0.76
41 26 0.22
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CTTCGGGAATTAGCCCGGATTTAGTAACTTAGCACAAATGC
Found at i:189687380 original size:40 final size:40
Alignment explanation
Indices: 189687335--189687501 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
189687325 CGGAATATAA
189687335 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
189687375 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
189687415 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
189687455 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
189687494 CCGGATAT
1 CCGGATAT
189687502 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:189687485 original size:80 final size:79
Alignment explanation
Indices: 189687335--189687501 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
189687325 CGGAATATAA
* *
189687335 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
189687400 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
189687415 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
189687477 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
189687494 CCGGATAT
1 CCGGATAT
189687502 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:189688349 original size:17 final size:19
Alignment explanation
Indices: 189688326--189688371 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
189688316 AAGAAGCATG
189688326 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
189688344 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
189688362 AATCATGCTC
1 AATCATGCTC
189688372 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:189695380 original size:40 final size:40
Alignment explanation
Indices: 189695335--189695501 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
189695325 CGGAATATAA
189695335 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
189695375 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
189695415 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
189695455 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
189695494 CCGGATAT
1 CCGGATAT
189695502 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:189695485 original size:80 final size:79
Alignment explanation
Indices: 189695335--189695501 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
189695325 CGGAATATAA
* *
189695335 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
189695400 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
189695415 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
189695477 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
189695494 CCGGATAT
1 CCGGATAT
189695502 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:189696349 original size:17 final size:19
Alignment explanation
Indices: 189696326--189696371 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
189696316 AAGAAGCATG
189696326 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
189696344 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
189696362 AATCATGCTC
1 AATCATGCTC
189696372 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:189700478 original size:40 final size:39
Alignment explanation
Indices: 189700430--189700530 Score: 105
Period size: 39 Copynumber: 2.5 Consensus size: 39
189700420 AAATTGAATG
**
189700430 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATTT
1 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTAG-AAGCT
* * * * *
189700470 ATATCCGGGTTAAGACCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTAGAAGCT
189700509 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAG-CCCGAAG
189700531 GCATTCGTGC
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
39 30 0.60
40 20 0.40
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTAGAAGCT
Found at i:189700595 original size:40 final size:39
Alignment explanation
Indices: 189700428--189700606 Score: 152
Period size: 40 Copynumber: 4.5 Consensus size: 39
189700418 AGAAATTGAA
* *
189700428 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
189700468 TTATATCCGGGTTAAGA-CCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
189700507 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
189700547 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
*
189700587 TGATATCCGGG-TAAGTCCCG
1 TGATATCCGGGCTAAGACCCG
189700607 TTGGCCTTGG
Statistics
Matches: 113, Mismatches: 18, Indels: 17
0.76 0.12 0.11
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 31 0.27
40 73 0.65
41 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:189708531 original size:40 final size:39
Alignment explanation
Indices: 189708363--189708533 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
189708353 AGAAATTGAA
* *
189708363 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
189708403 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
189708443 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
189708483 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
189708523 TGATATCCGGG
1 TGATATCCGGG
189708534 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:189714268 original size:40 final size:40
Alignment explanation
Indices: 189714223--189714389 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
189714213 CGGAATATAA
189714223 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
189714263 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
189714303 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
189714343 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
189714382 CCGGATAT
1 CCGGATAT
189714390 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:189721602 original size:40 final size:40
Alignment explanation
Indices: 189721557--189721723 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
189721547 CGGAATATAA
189721557 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
189721597 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
189721637 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
189721677 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
189721716 CCGGATAT
1 CCGGATAT
189721724 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:189724110 original size:2 final size:2
Alignment explanation
Indices: 189724103--189724130 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
189724093 ATCGGGTATG
189724103 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
189724131 AGTATGCCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:189724613 original size:24 final size:24
Alignment explanation
Indices: 189724581--189724809 Score: 363
Period size: 24 Copynumber: 9.6 Consensus size: 24
189724571 TATCTCAAAT
189724581 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTCACTATG
189724605 GCACTATGTGTGCGATT-ACTATG
1 GCACTATGTGTGCGATTCACTATG
189724628 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTCACTATG
189724652 GCACTATGTGTGCGATT-ACTATG
1 GCACTATGTGTGCGATTCACTATG
189724675 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTCACTATG
189724699 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTCACTATG
*
189724723 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTCACTATG
* * *
189724747 GCACTAAGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTCACTATG
* ** *
189724771 GCACTACGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTCACTATG
*
189724795 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
189724810 ACATAATAAG
Statistics
Matches: 196, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
23 46 0.23
24 150 0.77
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTCACTATG
Found at i:189724745 original size:48 final size:47
Alignment explanation
Indices: 189724581--189724809 Score: 368
Period size: 47 Copynumber: 4.8 Consensus size: 47
189724571 TATCTCAAAT
189724581 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTACTATG
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTACTATG
189724628 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTACTATG
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTACTATG
189724675 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATT-ACTATG
* * *
189724723 GCACTATGTGTGCGATTTACTATGGCACTAAGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGA-TTACTATG
* ** * *
189724771 GCACTACGTGTGCGATTTGCTATAGCTCTATGTGTGCGA
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGA
189724810 ACATAATAAG
Statistics
Matches: 172, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
47 88 0.51
48 82 0.48
49 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.34
Consensus pattern (47 bp):
GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTACTATG
Found at i:189731881 original size:2 final size:2
Alignment explanation
Indices: 189731874--189731901 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
189731864 ATCGGGTATG
189731874 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
189731902 AGTATGCCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:189732383 original size:24 final size:24
Alignment explanation
Indices: 189732351--189732577 Score: 329
Period size: 24 Copynumber: 9.6 Consensus size: 24
189732341 TATCTCAAAT
189732351 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTCACTATG
189732375 GCACTATGTGTGCGATT-ACTATG
1 GCACTATGTGTGCGATTCACTATG
189732398 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTCACTATG
189732422 GCACTATGTGTGCGACTT-ACTATG
1 GCACTATGTGTGCGA-TTCACTATG
189732446 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTCACTATG
189732470 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTCACTATG
*
189732494 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTCACTATG
* * *
189732518 GCACTAAGTGT---ATTTACTATA
1 GCACTATGTGTGCGATTCACTATG
* ** *
189732539 GCACTACGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTCACTATG
*
189732563 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
189732578 ACATAATAAG
Statistics
Matches: 190, Mismatches: 7, Indels: 12
0.91 0.03 0.06
Matches are distributed among these distances:
21 19 0.10
23 25 0.13
24 144 0.76
25 2 0.01
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTCACTATG
Found at i:189741752 original size:39 final size:40
Alignment explanation
Indices: 189741651--189741802 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
189741641 CGAATGGTAT
* * * *
189741651 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
189741692 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
189741732 CCGGGTTAAGTCCC-AAGGCATTTGTGCGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
189741771 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
189741803 CGCTATATCC
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 33 0.36
40 34 0.37
41 25 0.27
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:189741801 original size:40 final size:38
Alignment explanation
Indices: 189741651--189741802 Score: 137
Period size: 39 Copynumber: 3.8 Consensus size: 38
189741641 CGAATGGTAT
* *
189741651 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTAAA
* *
189741691 TCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 -CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAG-TA-CTAAA
* *
189741732 CCGGGTTAAGTCCC-AAGGCATTTGTGCGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTA-AA
* * *
189741771 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
189741803 CGCTATATCC
Statistics
Matches: 93, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 1 0.01
39 33 0.35
40 29 0.31
41 30 0.32
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (38 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
Found at i:189750023 original size:27 final size:28
Alignment explanation
Indices: 189749966--189750035 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
189749956 AAATTTGTAC
**
189749966 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
189749994 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
189750021 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
189750036 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:189750044 original size:27 final size:27
Alignment explanation
Indices: 189749966--189750047 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
189749956 AAATTTGTAC
* *
189749966 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
189749994 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
189750021 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
189750048 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:189757938 original size:27 final size:28
Alignment explanation
Indices: 189757881--189757950 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
189757871 AAATTTGTAC
**
189757881 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
189757909 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
189757936 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
189757951 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:189757959 original size:27 final size:27
Alignment explanation
Indices: 189757881--189757962 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
189757871 AAATTTGTAC
* *
189757881 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
189757909 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
189757936 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
189757963 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:189760423 original size:44 final size:44
Alignment explanation
Indices: 189760369--189760462 Score: 143
Period size: 44 Copynumber: 2.1 Consensus size: 44
189760359 GAAAAGAAAC
* * * *
189760369 AAGTCAAAAGAGAGGCTCGGGTTTCTGGTAAAAGAACTATTAGT
1 AAGTTAAAAGAGAGGCTCGAGTTTCTGGAAAAAGAACTATGAGT
*
189760413 AAGTTAAAAGAGAGGCTCGAGTTTTTGGAAAAAGAACTATGAGT
1 AAGTTAAAAGAGAGGCTCGAGTTTCTGGAAAAAGAACTATGAGT
189760457 AAGTTA
1 AAGTTA
189760463 CAATCATTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.39, C:0.09, G:0.27, T:0.26
Consensus pattern (44 bp):
AAGTTAAAAGAGAGGCTCGAGTTTCTGGAAAAAGAACTATGAGT
Found at i:189765042 original size:24 final size:24
Alignment explanation
Indices: 189765010--189765072 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
189765000 AATCTCAAAT
189765010 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
189765034 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
189765058 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
189765073 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:189783707 original size:41 final size:41
Alignment explanation
Indices: 189783662--189783779 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
189783652 TGAAAGATAA
189783662 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
189783703 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
189783733 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
189783774 ATGTAG
1 ATGTAG
189783780 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:189783718 original size:71 final size:71
Alignment explanation
Indices: 189783630--189783793 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
189783620 GAGATGTATC
189783630 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
189783695 AGGACA
66 AGGACA
189783701 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
189783766 AGGACA
66 AGGACA
189783772 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
189783794 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:189791283 original size:41 final size:41
Alignment explanation
Indices: 189791238--189791355 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
189791228 TGAAAGATAA
189791238 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
189791279 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
189791309 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
189791350 ATGTAG
1 ATGTAG
189791356 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:189791294 original size:71 final size:71
Alignment explanation
Indices: 189791206--189791369 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
189791196 GAGATGTATC
189791206 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
189791271 AGGACA
66 AGGACA
189791277 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
189791342 AGGACA
66 AGGACA
189791348 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
189791370 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:189795856 original size:40 final size:40
Alignment explanation
Indices: 189795801--189796010 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
189795791 AACATTGGAA
189795801 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
189795841 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
189795881 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
189795921 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
189795960 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
189796001 CTATATCCGG
1 ATATATCCGG
189796011 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:189803383 original size:40 final size:40
Alignment explanation
Indices: 189803338--189803467 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
189803328 CGGAATACAA
189803338 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
189803378 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
189803418 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
189803458 CCGGATATAA
1 CCGGATATAA
189803468 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:189815201 original size:19 final size:19
Alignment explanation
Indices: 189815150--189815218 Score: 63
Period size: 19 Copynumber: 3.6 Consensus size: 19
189815140 TATTAATATT
* *
189815150 AAAATTAATATAAACTTAAA
1 AAAATT-ATAAAAACTTATA
189815170 AAAATTA-AGAAAACTTATA
1 AAAATTATA-AAAACTTATA
*
189815189 AATATTATAAAAA--TATA
1 AAAATTATAAAAACTTATA
189815206 ATAAATTATAAAA
1 A-AAATTATAAAA
189815219 TTAACAAACC
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
17 5 0.12
18 11 0.26
19 19 0.45
20 7 0.17
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.30
Consensus pattern (19 bp):
AAAATTATAAAAACTTATA
Found at i:189820600 original size:16 final size:16
Alignment explanation
Indices: 189820568--189820600 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
189820558 AAGTTATAAG
189820568 TAAAAATATTTACAAT
1 TAAAAATATTTACAAT
189820584 TAAATAATATTTA-AAT
1 TAAA-AATATTTACAAT
189820600 T
1 T
189820601 GGTAATGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TAAAAATATTTACAAT
Found at i:189822380 original size:75 final size:75
Alignment explanation
Indices: 189822263--189822433 Score: 212
Period size: 75 Copynumber: 2.4 Consensus size: 75
189822253 CATGGCAAAG
** *
189822263 TATGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TATGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
189822322 CCATACTGAGC
65 CCATACCGAGC
*
189822333 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TATGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
189822398 CATACCGAGT
66 CATACCGAGC
**
189822408 TAAAAAATGTAGGTATGGTATT-TCAA
1 TATGAAATGTAGGTATGGTATTATCAA
189822434 TGAGGAAAAC
Statistics
Matches: 86, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
70 17 0.20
73 4 0.05
74 5 0.06
75 60 0.70
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TATGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:189822401 original size:35 final size:35
Alignment explanation
Indices: 189822266--189822431 Score: 174
Period size: 35 Copynumber: 4.6 Consensus size: 35
189822256 GGCAAAGTAT
* **
189822266 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
189822301 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
189822336 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
189822376 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
*
189822411 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
189822432 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
35 85 0.73
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:189829074 original size:52 final size:52
Alignment explanation
Indices: 189828878--189829077 Score: 197
Period size: 52 Copynumber: 3.8 Consensus size: 52
189828868 ACACACCGAA
** * * * * * *
189828878 GCCATAGCCCTACCATGGTCTTACACGG-ACCACATATGATATCATACCAAT
1 GCCATAGCCCGGCTATGGTCTTATACGGAATCACGTATCACATCATACCAAT
* * * * *
189828929 GCCATATCCCGGATATGGTCTTATACGGAATCACATAATCACATCACACCGAT
1 GCCATAGCCCGGCTATGGTCTTATACGGAATCACGT-ATCACATCATACCAAT
* * **
189828982 GCCATAGCCCAGCTATGGTCTTATACGGGAAT-ACGAATCACATGGTACCAAT
1 GCCATAGCCCGGCTATGGTCTTATAC-GGAATCACGTATCACATCATACCAAT
* *
189829034 GCCATAGCCCGGCTATGTTCTTATACGGAATCATGTATCACATC
1 GCCATAGCCCGGCTATGGTCTTATACGGAATCACGTATCACATC
189829078 TTTTCCGTCA
Statistics
Matches: 120, Mismatches: 25, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
51 27 0.22
52 51 0.43
53 37 0.31
54 5 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (52 bp):
GCCATAGCCCGGCTATGGTCTTATACGGAATCACGTATCACATCATACCAAT
Found at i:189832923 original size:47 final size:47
Alignment explanation
Indices: 189832854--189832953 Score: 141
Period size: 47 Copynumber: 2.1 Consensus size: 47
189832844 CTTCAATACA
*
189832854 GTTACATACAATATCTTTACCTGATTCAAAC-AACCTAATCAAGCTTT
1 GTTACATACAATATCTCTACCTGATTC-AACTAACCTAATCAAGCTTT
* * *
189832901 GTTACATACAATATCTCTACCTGATTCAGCTTATCTAATCAAGCTTT
1 GTTACATACAATATCTCTACCTGATTCAACTAACCTAATCAAGCTTT
189832948 G-TACAT
1 GTTACAT
189832954 TAGGTCTCTA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
46 7 0.15
47 41 0.85
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.36
Consensus pattern (47 bp):
GTTACATACAATATCTCTACCTGATTCAACTAACCTAATCAAGCTTT
Found at i:189834017 original size:2 final size:2
Alignment explanation
Indices: 189834012--189834036 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
189834002 AAAAAAAAAA
189834012 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
189834037 ATGAGCATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:189834581 original size:1 final size:1
Alignment explanation
Indices: 189834575--189834604 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
189834565 GGAAGCATTT
189834575 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
189834605 GGGAATCGAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:189835673 original size:12 final size:13
Alignment explanation
Indices: 189835658--189835710 Score: 53
Period size: 12 Copynumber: 4.5 Consensus size: 13
189835648 AATAGGGGTG
189835658 ATAATAATA-ATA
1 ATAATAATACATA
189835670 ATAATAATACA-A
1 ATAATAATACATA
*
189835682 ACAATAATACAT-
1 ATAATAATACATA
*
189835694 AT-AT-ATATATA
1 ATAATAATACATA
189835705 ATAATA
1 ATAATA
189835711 GTAGTCAGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
10 5 0.15
11 4 0.12
12 23 0.70
13 1 0.03
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (13 bp):
ATAATAATACATA
Found at i:189835798 original size:3 final size:3
Alignment explanation
Indices: 189835785--189835855 Score: 51
Period size: 3 Copynumber: 23.3 Consensus size: 3
189835775 GAGGGCATAT
189835785 ATA AT- ATA ATA ATA ATA TATA CATGA GA-A ATA ATA ATA ATA AT- ATAA
1 ATA ATA ATA ATA ATA ATA -ATA -AT-A -ATA ATA ATA ATA ATA ATA AT-A
* *
189835832 ATA ATA GTA AAA ATA ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
189835856 AAAAATAAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
2 7 0.13
3 39 0.71
4 7 0.13
5 2 0.04
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:189835804 original size:18 final size:18
Alignment explanation
Indices: 189835781--189835837 Score: 62
Period size: 18 Copynumber: 3.0 Consensus size: 18
189835771 TAGAGAGGGC
189835781 ATATATAATATAATAATA
1 ATATATAATATAATAATA
*
189835799 ATATATACATGAGAAATAATA
1 ATATATA-AT-A-TAATAATA
189835820 ATA-ATAATATAAATAATA
1 ATATATAATAT-AATAATA
189835838 GTAAAAATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
18 15 0.45
19 4 0.12
20 4 0.12
21 10 0.30
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (18 bp):
ATATATAATATAATAATA
Found at i:189835846 original size:27 final size:27
Alignment explanation
Indices: 189835790--189835862 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 27
189835780 CATATATAAT
189835790 ATAATAATAATAT--ATACATGAGAAATA
1 ATAATAATAATATAAATA-AT-AGAAATA
189835817 ATAATAATAATATAAATAATAGTAAA-A
1 ATAATAATAATATAAATAATAG-AAATA
*
189835844 ATAATAA-AATA-AAAAAATA
1 ATAATAATAATATAAATAATA
189835863 AAACAAAGCT
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
25 7 0.17
26 4 0.10
27 23 0.55
28 5 0.12
29 3 0.07
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.27
Consensus pattern (27 bp):
ATAATAATAATATAAATAATAGAAATA
Found at i:189836282 original size:13 final size:13
Alignment explanation
Indices: 189836264--189836357 Score: 79
Period size: 13 Copynumber: 8.2 Consensus size: 13
189836254 AGTGGTCGGG
189836264 GTGGTTTAGTGGA
1 GTGGTTTAGTGGA
189836277 GTGGTTTAGTAGG-
1 GTGGTTTAGT-GGA
189836290 GTGG-TT-G-GG-
1 GTGGTTTAGTGGA
*
189836299 GTGGTTTAGTGTA
1 GTGGTTTAGTGGA
189836312 GTGG--T--TGGA
1 GTGGTTTAGTGGA
189836321 GTGGTTTAGTGGA
1 GTGGTTTAGTGGA
189836334 GTGG--T--TGGA
1 GTGGTTTAGTGGA
189836343 GTGGTTTAGTGGA
1 GTGGTTTAGTGGA
189836356 GT
1 GT
189836358 AAAGATATTT
Statistics
Matches: 66, Mismatches: 2, Indels: 26
0.70 0.02 0.28
Matches are distributed among these distances:
9 21 0.32
10 2 0.03
11 6 0.09
12 3 0.05
13 32 0.48
14 2 0.03
ACGTcount: A:0.13, C:0.00, G:0.49, T:0.38
Consensus pattern (13 bp):
GTGGTTTAGTGGA
Found at i:189836355 original size:22 final size:22
Alignment explanation
Indices: 189836273--189836357 Score: 136
Period size: 22 Copynumber: 3.9 Consensus size: 22
189836263 GGTGGTTTAG
189836273 TGGAGTGGTTTAGTAGG-GTGGT
1 TGGAGTGGTTTAGT-GGAGTGGT
* *
189836295 TGGGGTGGTTTAGTGTAGTGGT
1 TGGAGTGGTTTAGTGGAGTGGT
189836317 TGGAGTGGTTTAGTGGAGTGGT
1 TGGAGTGGTTTAGTGGAGTGGT
189836339 TGGAGTGGTTTAGTGGAGT
1 TGGAGTGGTTTAGTGGAGT
189836358 AAAGATATTT
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
21 1 0.02
22 57 0.98
ACGTcount: A:0.13, C:0.00, G:0.49, T:0.38
Consensus pattern (22 bp):
TGGAGTGGTTTAGTGGAGTGGT
Found at i:189836677 original size:44 final size:44
Alignment explanation
Indices: 189836613--189837330 Score: 614
Period size: 44 Copynumber: 16.4 Consensus size: 44
189836603 TGAGTTCTTG
* *
189836613 ATCTGCT-TCTTCGATCTGTTCCCCATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* *
189836656 ATCTGCTATCTTC-AACTTGTTCCCTATAAGCACAGGGATTCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * *
189836698 ATGCTGAAATCTTCGATCTGCTTCACC-GTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTC-CCTATAAGCACAGGGATGCCAA
* * *
189836744 ATCTGCTATCTTCGATCTGTTTCTTATAAGCACATGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * *
189836788 ATCTGCTGT-TGTC-AACTTGTTTCCTATAAGCACAGGGATGCCAT
1 ATCTGCTATCT-TCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
* ** * * * *
189836832 GT-TGAAATCTTCGATCTGCTTCACTATAAGCACAGGAATGTCAG
1 ATCTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
189836876 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * * *
189836920 ATCTGCTGTTTTC-AACTTGTTCCCTATAAGTACAAGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * *
189836962 ATGCTGAAATCTTCGAT-TGTTCACC-GTAAGCACAGGAATGTCAA
1 AT-CTGCTATCTTCGATCTGTTC-CCTATAAGCACAGGGATGCCAA
*
189837006 ATCTGCTATTCTTCGATCT-TTCCCTATAAGCATAGGGATGCCAA
1 ATCTGCTA-TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* *
189837050 ATCTGCTGT-TTC-AACTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
189837091 ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
*
189837137 ATATGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * *
189837181 ATCTGCTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
189837223 ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
* *
189837269 ATCTACTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
*
189837313 ATCTGCAATCTTCGATCT
1 ATCTGCTATCTTCGATCT
189837331 CTCTCCGCCG
Statistics
Matches: 531, Mismatches: 106, Indels: 75
0.75 0.15 0.11
Matches are distributed among these distances:
41 4 0.01
42 31 0.06
43 87 0.16
44 343 0.65
45 60 0.11
46 6 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
Found at i:189836862 original size:132 final size:131
Alignment explanation
Indices: 189836612--189837318 Score: 1170
Period size: 132 Copynumber: 5.4 Consensus size: 131
189836602 TTGAGTTCTT
* * *
189836612 GATCTGCT-TCTTCGATCTGTTCCCCATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGT-TTCAACTTGT
* *
189836676 TCCCTATAAGCACAGGGATTCCATGCTGAAATCTTCGATCTGCTTCACCGTAAGCACAGGAATGT
65 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
189836741 CA
130 CA
* * *
189836743 GATCTGCTATCTTCGATCTGTTTCTTATAAGCACATGGATGCCAAATCTGCTGTTGTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTT-TCAACTTGT
* * *
189836808 TTCCTATAAGCACAGGGATGCCATGTTGAAATCTTCGATCTGCTTCACTATAAGCACAGGAATGT
65 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
189836873 CA
130 CA
189836875 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTG-TTTCAACTTGT
* * *
189836940 TCCCTATAAGTACAAGGATGCCATGCTGAAATCTTCGAT-TG-TTCACCGTAAGCACAGGAATGT
65 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
189837003 CA
130 CA
* *
189837005 AATCTGCTATTCTTCGATCT-TTCCCTATAAGCATAGGGATGCCAAATCTGCTGTTTCAACTTGT
1 GATCTGCTA-TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTCAACTTGT
189837069 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
65 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
189837134 CA
130 CA
*
189837136 GATATGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTG-TTTCAACTTGT
189837201 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
65 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
189837266 CA
130 CA
* *
189837268 GATCTACTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGC
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGC
189837319 AATCTTCGAT
Statistics
Matches: 537, Mismatches: 31, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
129 48 0.09
130 74 0.14
131 83 0.15
132 330 0.61
133 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.31
Consensus pattern (131 bp):
GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTCAACTTGTT
CCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTC
A
Found at i:189837760 original size:205 final size:203
Alignment explanation
Indices: 189837342--189837827 Score: 699
Period size: 204 Copynumber: 2.4 Consensus size: 203
189837332 TCTCCGCCGT
* * * * * * *
189837342 TACAGAGACGTCAAATTATCTTGGATTTGCTTCAATGTAAACACGTAAAAGCCAAATCAGCTATG
1 TACAGAGATGCCAAATCATCTTAGATTTACTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
* *
189837407 TCTTCGATTTGCTCCTTGTAAGCACAAGGATAGAAAACTATCTTGGATCTGCTTCAGTATAAAAT
66 T-TTCGATTTGCTCCTTGTAAGCACAAGGATAGAAAACCATCTTGGATCTACTTCAGTATAAAAT
* *
189837472 TTGAAGGTTGGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGTT
130 CTGAAGGTTAGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGTT
189837537 CTCTGACAA
195 CTCTGACAA
* *
189837546 TACAGAGATGCCAAATCATCTTAGATTTACTTTAACGTAAGCACGTGAAAGCCAAATCAGCTATG
1 TACAGAGATGCCAAATCATCTTAGATTTACTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
189837611 TATTCGATTTGCTCCTTGTAAGCACAAGGAT-GCCAAAACCATCTTGGATCTACTTCAGTATAAA
66 T-TTCGATTTGCTCCTTGTAAGCACAAGGATAG--AAAACCATCTTGGATCTACTTCAGTATAAA
* * * * *
189837675 CATCTGAAGGTTAGATCTGCTATGTGTCTGCCTTCCGTCGAAGTGGAGATGCTAGAC-TCGATTT
128 -ATCTGAAGGTTAGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTT
*
189837739 GTTTTCTGACAA
192 GTTCTCTGACAA
* * *
189837751 TACAGAGATGCCAAATCATCATAGA-TTACTTCAACGTAAACACGTGAAAGCTAAATCAACTATG
1 TACAGAGATGCCAAATCATCTTAGATTTACTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
*
189837815 TTTCGATCTGCTC
66 TTTCGATTTGCTC
189837828 TCCACCTGAT
Statistics
Matches: 253, Mismatches: 26, Indels: 7
0.88 0.09 0.02
Matches are distributed among these distances:
203 12 0.05
204 122 0.48
205 69 0.27
206 50 0.20
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (203 bp):
TACAGAGATGCCAAATCATCTTAGATTTACTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
TTTCGATTTGCTCCTTGTAAGCACAAGGATAGAAAACCATCTTGGATCTACTTCAGTATAAAATC
TGAAGGTTAGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGTTC
TCTGACAA
Found at i:189838009 original size:23 final size:23
Alignment explanation
Indices: 189837990--189838044 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
189837980 GCCAAATAAT
189837990 TAGAATGCTATGATTGAAATGAA
1 TAGAATGCTATGATTGAAATGAA
*
189838013 TCGAATGCTATGATTGAAATGAA
1 TAGAATGCTATGATTGAAATGAA
189838036 TCA-AATGCT
1 T-AGAATGCT
189838045 CCTAACTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.31
Consensus pattern (23 bp):
TAGAATGCTATGATTGAAATGAA
Found at i:189840632 original size:7 final size:7
Alignment explanation
Indices: 189840620--189841196 Score: 981
Period size: 7 Copynumber: 84.0 Consensus size: 7
189840610 CAATTATTTG
189840620 TAGGGTT
1 TAGGGTT
189840627 TAGGGTT
1 TAGGGTT
189840634 TAGGGTT
1 TAGGGTT
189840641 TAGGGTT
1 TAGGGTT
189840648 TAGGGTT
1 TAGGGTT
189840655 TAGGGTT
1 TAGGGTT
189840662 TAGGGTT
1 TAGGGTT
189840669 TAGGGTT
1 TAGGGTT
189840676 TAGGGTT
1 TAGGGTT
189840683 TAGGGTT
1 TAGGGTT
189840690 TAGGGTT
1 TAGGGTT
189840697 TAGGGTT
1 TAGGGTT
189840704 TAGGGTT
1 TAGGGTT
189840711 TAGGGTT
1 TAGGGTT
189840718 TAGGGTT
1 TAGGGTT
189840725 T-GGGTT
1 TAGGGTT
189840731 TAGGGTT
1 TAGGGTT
189840738 TAGGGTT
1 TAGGGTT
189840745 TA-GGTT
1 TAGGGTT
189840751 TAGGGTT
1 TAGGGTT
189840758 TA-GGTT
1 TAGGGTT
189840764 TAGGGTT
1 TAGGGTT
189840771 TAGGG--
1 TAGGGTT
189840776 TAGGGTT
1 TAGGGTT
189840783 TAGGGTT
1 TAGGGTT
189840790 TAGGGTT
1 TAGGGTT
189840797 TA-GGTT
1 TAGGGTT
189840803 TAGGGTT
1 TAGGGTT
189840810 TAGGGTT
1 TAGGGTT
189840817 TAGGGTT
1 TAGGGTT
189840824 TAGGGTT
1 TAGGGTT
189840831 TAGGGTTT
1 TAGGG-TT
189840839 TAGGGTT
1 TAGGGTT
189840846 TAGGGTT
1 TAGGGTT
189840853 TAGGGTT
1 TAGGGTT
189840860 TAGGGTT
1 TAGGGTT
189840867 TAGGGTT
1 TAGGGTT
189840874 TAGGGTGGGT
1 TAGGGT---T
189840884 TAGGGTT
1 TAGGGTT
189840891 TAGGGTT
1 TAGGGTT
189840898 TAGGGTT
1 TAGGGTT
189840905 TAGGG-T
1 TAGGGTT
189840911 TAGGGTT
1 TAGGGTT
189840918 TAGGGTT
1 TAGGGTT
189840925 TAGGG-T
1 TAGGGTT
189840931 TAGGG-T
1 TAGGGTT
189840937 TAGGGTTT
1 TAGGG-TT
189840945 TAGGGTT
1 TAGGGTT
189840952 TAGGGTT
1 TAGGGTT
189840959 TAGGGTT
1 TAGGGTT
189840966 TAGGGTT
1 TAGGGTT
189840973 TAGGG-T
1 TAGGGTT
189840979 TAGGGTT
1 TAGGGTT
189840986 TA-GGTT
1 TAGGGTT
189840992 TAGGG-T
1 TAGGGTT
189840998 TA-GGTT
1 TAGGGTT
189841004 TAGGGTT
1 TAGGGTT
189841011 TAGGGTT
1 TAGGGTT
189841018 TAGGGTT
1 TAGGGTT
189841025 TAGGG-T
1 TAGGGTT
189841031 TAGGGTT
1 TAGGGTT
189841038 TAGGGTT
1 TAGGGTT
189841045 TAGGGTT
1 TAGGGTT
189841052 TAGGGTT
1 TAGGGTT
189841059 TAGGGTT
1 TAGGGTT
189841066 TAGGGTT
1 TAGGGTT
189841073 TAGGGTT
1 TAGGGTT
189841080 TAGGGTT
1 TAGGGTT
189841087 TAGGGTT
1 TAGGGTT
189841094 TAGGGTT
1 TAGGGTT
189841101 TA-GGTT
1 TAGGGTT
189841107 TAGGGTT
1 TAGGGTT
189841114 TAGGGTT
1 TAGGGTT
189841121 TAGGG-T
1 TAGGGTT
189841127 TAGGGTT
1 TAGGGTT
189841134 TAGGGTTT
1 TAGGG-TT
189841142 TAGGGTT
1 TAGGGTT
189841149 TAGGGTT
1 TAGGGTT
189841156 TA-GGTT
1 TAGGGTT
189841162 TAGGGTT
1 TAGGGTT
189841169 TAGGGTT
1 TAGGGTT
189841176 TAGGGTT
1 TAGGGTT
189841183 TAGGGTT
1 TAGGGTT
189841190 TAGGGTT
1 TAGGGTT
189841197 NNNNNNNNNN
Statistics
Matches: 548, Mismatches: 0, Indels: 44
0.93 0.00 0.07
Matches are distributed among these distances:
5 7 0.01
6 84 0.15
7 430 0.78
8 20 0.04
10 7 0.01
ACGTcount: A:0.14, C:0.00, G:0.43, T:0.43
Consensus pattern (7 bp):
TAGGGTT
Found at i:189843567 original size:68 final size:66
Alignment explanation
Indices: 189843495--189843666 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
189843485 CATCATGTGT
* * * *
189843495 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
189843558 TGTAG
62 TGTAG
** * *
189843563 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
189843628 AG
65 AG
* * * *
189843630 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
189843667 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:189843600 original size:64 final size:64
Alignment explanation
Indices: 189843519--189843702 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
189843509 AGACATTATG
* * *
189843519 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
189843583 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
189843648 AA
63 AA
* * *
189843650 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
189843703 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:189847998 original size:68 final size:66
Alignment explanation
Indices: 189847926--189848097 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
189847916 CATCATGTGT
* * * *
189847926 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
189847989 TGTAG
62 TGTAG
** * *
189847994 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
189848059 AG
65 AG
* * * *
189848061 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
189848098 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:189848031 original size:64 final size:64
Alignment explanation
Indices: 189847950--189848133 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
189847940 AGACATTATG
* * *
189847950 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
189848014 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
189848079 AA
63 AA
* * *
189848081 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
189848134 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:189851603 original size:30 final size:30
Alignment explanation
Indices: 189851569--189851629 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
189851559 TTCCCGAGCC
189851569 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * *
189851599 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
189851629 T
1 T
189851630 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.41, C:0.05, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:189853953 original size:29 final size:29
Alignment explanation
Indices: 189853920--189854051 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
189853910 GTGACGAGAT
189853920 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
189853949 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
189853978 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
189854007 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
189854036 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
189854052 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:189861895 original size:29 final size:29
Alignment explanation
Indices: 189861862--189861993 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
189861852 GTGACGAGAT
189861862 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
189861891 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
189861920 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
189861949 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
189861978 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
189861994 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:189864568 original size:40 final size:40
Alignment explanation
Indices: 189864524--189864650 Score: 191
Period size: 40 Copynumber: 3.2 Consensus size: 40
189864514 CTAGTGACTT
* *
189864524 TATCCGGGCTAATACCCGAAGGCATTCGTGCAAGTTGTTA
1 TATCCGGGCTAATACCCGAAGGCATTCGTGCGAGTCGTTA
*
189864564 TATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCGTTA
1 TATCCGGGCTAATACCCGAAGGCATTCGTGCGAGTCGTTA
* * * *
189864604 TATCCGGGCTAAGACTCGAAGGCATTCGTGCGTGTGGTTA
1 TATCCGGGCTAATACCCGAAGGCATTCGTGCGAGTCGTTA
189864644 TATCCGG
1 TATCCGG
189864651 TTGTATTCTG
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 79 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAATACCCGAAGGCATTCGTGCGAGTCGTTA
Found at i:189864624 original size:80 final size:79
Alignment explanation
Indices: 189864483--189864650 Score: 212
Period size: 80 Copynumber: 2.1 Consensus size: 79
189864473 CAATTGAATG
* * * *
189864483 ATATCTGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
189864548 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* * *
189864563 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACTCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
189864627 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
189864643 ATATCCGG
1 ATATCCGG
189864651 TTGTATTCTG
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
79 2 0.03
80 73 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:189867410 original size:40 final size:40
Alignment explanation
Indices: 189867365--189867531 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
189867355 CGGAATATAA
189867365 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
189867405 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
189867445 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
189867485 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
189867524 CCGGATAT
1 CCGGATAT
189867532 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:189875424 original size:40 final size:40
Alignment explanation
Indices: 189875379--189875545 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
189875369 CGGAATATAA
189875379 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
189875419 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
189875459 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
189875499 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
189875538 CCGGATAT
1 CCGGATAT
189875546 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:189884294 original size:27 final size:26
Alignment explanation
Indices: 189884238--189884294 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
189884228 CAACCTTAAC
*
189884238 CCTAGGGGTAAATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTTTACA
* *
189884264 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTACA
189884291 CCTA
1 CCTA
189884295 TAAAGGTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 16 0.59
27 11 0.41
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTACA
Found at i:189887023 original size:295 final size:294
Alignment explanation
Indices: 189885941--189887309 Score: 1811
Period size: 295 Copynumber: 4.6 Consensus size: 294
189885931 GGGCGTTACA
*
189885941 CAAATAGCGTTTCAAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAA
1 CAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAA
* * ** *
189886006 AAGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACTAAAACTTCCCATGAGGTCA
66 ATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCA
* *
189886071 CCCATCCTAGTACTACTCTAGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCAT
131 CCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCAT
* * ** * * *
189886136 TAGTGCTGGTATGATCGCACTCGTCAATTCTTGCTTATTCTATTTATATAA-AAGCTACCACTAA
196 TAGTCCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAGGA-CAACC-CTTA
* * *
189886200 TTGCACTTTG-GGCTCGAATTTGAATTTAATTATGAC
259 TTGCAC-TTGAGCCTCGAATTTGAATTTAAATACGAC
* * * * *
189886236 AAAATAGCGTTTTGAGTGATTTATTTCGTAAATAACTAATTAGTGAAACTATGACATATTAAAAA
1 CAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATA-T-AAAA
* * * * * * *
189886301 AAATTGAAAAAAAATTAAATAAGGTATAAAATTGGAGGGGTGCAACAAGAGAACTTCCAATGAGG
64 AAA-TGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGG
* * * * *
189886366 TCACCCATCCTAGAACTACTCTCACCCAAGCACGCTTAACTGCAGAGTTCTAATAGGATCCGGTG
128 TCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTG
* * ** * * *
189886431 CATTAGTGCTGGTATGATCACACCCGTCAATTCTTGCTTATTCTATTTATGTGAAGGTTGCCA-C
193 CATTAGTCCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATAT-AAGG--ACAACC
* * * * *
189886495 C--GTCGCAATTGAGCCTCGACTTTGAATTTCAATACGAC
255 CTTATTGCACTTGAGCCTCGAATTTGAATTTAAATACGAC
* * *
189886533 CAAATAGCGTTTCAAGTGATTTATTTCATAAATAACTAATTAGCTAAACGATGAGATATAAAAAA
1 CAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATAT-AAAAA
*
189886598 AATGG-AAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTC
65 AATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTC
* * * *
189886662 ACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGTGGATTTCTGATGGGATCCAGTGCA
130 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCA
*
189886727 TTAGTCCTGGTATGATCGCACCCGTCAAGTCTTTGCGCATTCTATTTATATAAGGACAACCCTTA
195 TTAGTCCTGGTATGATCGCACCCGTCAATTC-TTGCGCATTCTATTTATATAAGGACAACCCTTA
*
189886792 -TGCACTTGAGCCTCGAGTTTGAATTTAAATACGAC
259 TTGCACTTGAGCCTCGAATTTGAATTTAAATACGAC
* ** *
189886827 GAAATAGCGTTTCGAGTGATTTATTTCACAAATAACAAATTAGTTAAACGATGAGATATAAAAAA
1 CAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAA
* *
189886892 ATGGAAAAAAATTAAATGAGAATATATAATTGGAGGGGTGCAACATGAGGACTTCCCAGGAGGTC
66 ATGGAAAAAAATTAAATGAG-ATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTC
* * * *
189886957 AGCCATCCTAGTACTACTCTCGCCCAAGGACGCTTAACTGTGGAGTTCTGATGGGATCTGGTGCA
130 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCA
* * * * *
189887022 TTAGTCCAGGTATGATCGCA-CCGTCAACTCTTGCGCATTTTATTTATATAAAGACGATCCCTTA
195 TTAGTCCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAGGAC-AACCCTTA
**
189887086 TTTTACTTGAGCCTCGAATTTGAATTTAAATACGAC
259 TTGCACTTGAGCCTCGAATTTGAATTTAAATACGAC
* *
189887122 CAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACAACGAGATATAAAAAA
1 CAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAA
* * * * ** *
189887187 AAGGAAAAAAATTAAATGAGATACAAAATAGGA-GGGTGCAACACGAGGACTTCTCACCAAGTCA
66 ATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCA
189887251 CCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCG
131 CCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCG
189887310 ATTCTTGCAC
Statistics
Matches: 946, Mismatches: 112, Indels: 34
0.87 0.10 0.03
Matches are distributed among these distances:
292 2 0.00
293 116 0.12
294 268 0.28
295 299 0.32
296 13 0.01
297 82 0.09
298 160 0.17
299 3 0.00
300 1 0.00
301 2 0.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.28
Consensus pattern (294 bp):
CAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAA
ATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCA
CCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCAT
TAGTCCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAGGACAACCCTTATT
GCACTTGAGCCTCGAATTTGAATTTAAATACGAC
Found at i:189887861 original size:296 final size:294
Alignment explanation
Indices: 189887312--189888460 Score: 1642
Period size: 296 Copynumber: 3.9 Consensus size: 294
189887302 GGGATCCGAT
* * * *
189887312 TCTTGCACATTCTATTTATATAAAGGCTACCCATGATCGCACTTGAGCCTCAAATTTGAATTTAA
1 TCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGAGCCTCGAATTTGAATTTAA
* * *
189887377 ATACGACCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATAAGATA
66 ATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAAATAATTAGTTAAACGATGAGATA
* * * *
189887442 TAAAAATACGGACAAAAATTAAATGAGATACAAAATAGGAGGGGTGCAACACGAGGACTTCTCAC
131 TAAAAAAATGGAAAAAAATTAAATGAGATACAAAATAGGAGGGGTGCAACACGAGGACTTCCCAC
*
189887507 CAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAACTACGGAGTTCTGATGGGATC
196 CAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT-AACTGCGGAGTTCTGATGGGATC
* * *
189887572 CAGCGCATTAGTGCTGGTATAATCGCACCCGTCAG
260 CAGTGCATTAGTCCTGGTATGATCGCACCCGTCAG
* * * *
189887607 TTCTTGGGCATTTTATTTATATAAAGGCTACCCCTAATCGCGCTTGAGCCTCGAATTTGAATTTA
1 -TCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGAGCCTCGAATTTGAATTTA
* *
189887672 AATACGACCAAATAGCG-TTCGGAGTGATTTATTCCGTAAATAAATAATTAGTTAAATGATGAGA
65 AATACGACCAAATAGCGTTTC-GAGTGATTTATTTCGTAAATAAATAATTAGTTAAACGATGAGA
*
189887736 TATAAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCC
129 TAT-AAAAAAATGGAAAAAAATTAAATGAGATACAAAATAGGAGGGGTGCAACACGAGGACTTCC
** * * * *
189887801 CAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGTGGATTTCTGATGGGA
193 CACCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
*
189887866 TCCAGTGCATTAGTCCTGGTATGATCGCACCTGTCAAG
258 TCCAGTGCATTAGTCCTGGTATGATCGCACCCGTC-AG
*
189887904 TCTTGCGCATTCTATTTATAT-AAGGAC-AACCCTTATCGCACTTGAGCCTCGAATTTGAATTTA
1 TCTTGCGCATTCTATTTATATAAAGG-CTACCCCTTATCGCACTTGAGCCTCGAATTTGAATTTA
* *
189887967 AATACGACGAAATAGCGTTTCGAGTGATTTATTTCGCAAAT-AATAAATTAGTTAAACGATGAGA
65 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAAAT-AATTAGTTAAACGATGAGA
* * * * *
189888031 TAT-AAAAAATGGAAAAAAAAATTAAATGAGAATATATAATTGGAAGGGCGCAACACGAGGACTT
129 TATAAAAAAATGG--AAAAAAATTAAATGAG-ATACAAAATAGGAGGGGTGCAACACGAGGACTT
** * * * *
189888095 CCCAGGAGGTCAGCCATCCTAGTACTACTCTCGCCCAAGGACGCTTAACTGTGGAGTTCTGATGG
191 CCCACCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
** * *
189888160 GATCTGGTGCATTAGTCCAGGTATGATCGCACCCGTCAAC
256 GATCCAGTGCATTAGTCCTGGTATGATCGCACCCGTC-AG
* * * ***
189888200 TCTTGCGCATTTTATTTATATAAAGACGACCCCTTATTTTACTTGAGCCTCGAATTTGAATTTAA
1 TCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGAGCCTCGAATTTGAATTTAA
* *
189888265 ATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGACGAGATA
66 ATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAAATAATTAGTTAAACGATGAGATA
* *
189888330 TAAAAAAAAAGGAAAAAAATTAAATGAGATACAAAATAGGAGGGGTGCAACACGAGGACTTCTCA
131 T-AAAAAAATGGAAAAAAATTAAATGAGATACAAAATAGGAGGGGTGCAACACGAGGACTTCCCA
189888395 CCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
195 CCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
189888460 C
260 C
189888461 GATTCTTGCA
Statistics
Matches: 765, Mismatches: 74, Indels: 28
0.88 0.09 0.03
Matches are distributed among these distances:
293 9 0.01
294 3 0.00
295 111 0.15
296 423 0.55
297 209 0.27
298 2 0.00
299 8 0.01
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (294 bp):
TCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGAGCCTCGAATTTGAATTTAA
ATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAAATAATTAGTTAAACGATGAGATA
TAAAAAAATGGAAAAAAATTAAATGAGATACAAAATAGGAGGGGTGCAACACGAGGACTTCCCAC
CAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC
AGTGCATTAGTCCTGGTATGATCGCACCCGTCAG
Found at i:189889018 original size:296 final size:296
Alignment explanation
Indices: 189888471--189889020 Score: 868
Period size: 296 Copynumber: 1.9 Consensus size: 296
189888461 GATTCTTGCA
*
189888471 CATTCTATTTATATAAAGGCTACCCATGATCGCACTTGAGCCTCAAATTTGAATTTAAATACGAC
1 CATTCTATTTATATAAAAGCTACCCATGATCGCACTTGAGCCTCAAATTTGAATTTAAATACGAC
* *
189888536 CAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACAATAAGATATAAAAAT
66 CAAATAACATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACAATAAGATATAAAAAA
* * *
189888601 ACGGACAAAAATTAAATGAGATACAAAATAGGAGGGGTGCAACACGAGGACTTCTCACCAAGTCA
131 ACGGAAAAAAATTAAATGAGATACAAAATAGGAGGGATGCAACACGAGGACATCTCACCAAGTCA
* * * * *
189888666 CCCCTCCTAGTACTACTCTCGCCCAAGCACGCTTAAACTGCGGAGTTCTGATGGGATCCAGCGCA
196 CCCATCCTAGTACTACTCTCACCCAAGCACGCTTAAACTACAGAGTTCTAATGGGATCCAGCGCA
189888731 TTAGAGCTGGTATGATCGCACCCGTCAGTTCTTGGG
261 TTAGAGCTGGTATGATCGCACCCGTCAGTTCTTGGG
* * * *
189888767 CATTTTATTTATATAAAAGCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGAC
1 CATTCTATTTATATAAAAGCTACCCATGATCGCACTTGAGCCTCAAATTTGAATTTAAATACGAC
* * * * *
189888832 CAAATAGCATTTGGAGTGATTTATTTTGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAA
66 CAAATAACATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACAATAAGATAT-AAAAA
* *
189888897 AATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGATGCAACACGAGGACATCTCACCAAGTC
130 AACGGAAAAAAATTAAATGAGATACAAAATAGGAGGGATGCAACACGAGGACATCTCACCAAGTC
* *
189888962 ACCCATCCTAGTACTACTCTTACCCAAGCACGCTT-AACTACAGATTTCTAATGGGATCC
195 ACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAAACTACAGAGTTCTAATGGGATCC
189889021 GGTTCTTCCG
Statistics
Matches: 229, Mismatches: 24, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
296 133 0.58
297 96 0.42
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (296 bp):
CATTCTATTTATATAAAAGCTACCCATGATCGCACTTGAGCCTCAAATTTGAATTTAAATACGAC
CAAATAACATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACAATAAGATATAAAAAA
ACGGAAAAAAATTAAATGAGATACAAAATAGGAGGGATGCAACACGAGGACATCTCACCAAGTCA
CCCATCCTAGTACTACTCTCACCCAAGCACGCTTAAACTACAGAGTTCTAATGGGATCCAGCGCA
TTAGAGCTGGTATGATCGCACCCGTCAGTTCTTGGG
Found at i:189889826 original size:295 final size:294
Alignment explanation
Indices: 189889023--189891049 Score: 2834
Period size: 295 Copynumber: 6.9 Consensus size: 294
189889013 TGGGATCCGG
*
189889023 TTCTTCCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
1 TTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
* * * *
189889088 CATACGACCAAATAGAGTTTCAAGTGATTTATTTCGTAAATAACTAATTAGTTAAATGATGAGAT
66 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
* *
189889153 A-AAAAAAATGG-AAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGAACTTCCTA
131 ATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCA
* * * ** * * *
189889216 GAAGGTCACCCACCCTAGCACTACTCTCAACCAAGCACGATTAATTGCGGAGTTCTAATGGGATC
196 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
* *
189889281 CGATGCATTAGTGCTGGTATGATCGCACCAGTCAA
261 CG-TGCATTAGTCCTGGTATGATCGCACCCGTCAA
* * * * *
189889316 TTCTTGCGCAATCTATTTATAT-AAGCCTACCCTTGATTGAACTTGAGCCTCGAATTTGAATTTA
1 TTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
* * * * *
189889380 AATATGACCAAATAGCGTTT-GAGTGATTTATTTCATAAATAAATAATTAGTTAAACTATGACAT
66 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
* * * * **
189889444 ATAAAAAAAGGGAAAAAAATGAAATGAGATATAAAAATGCAGGGGTGCAACTTGAGGACTTCCCA
131 ATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCA
* * * *
189889509 AGAGGTCACCTATCCCAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGACGGGATC
196 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
** *
189889574 CGTTGCATTAGTGTTGGTATGATCGCACCTGTCAA
261 CG-TGCATTAGTCCTGGTATGATCGCACCCGTCAA
** * * *
189889609 TTCTTGCTTATTCTATTTATGTAAAGGCTACCACTGATCGCACTTGAGCCTCGAATTTCAATTTA
1 TTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
* * *
189889674 AATATGACCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAATGATGAGAT
66 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
* *
189889739 ATAAAAAAATGGAAAAAAATTAAATGAAATATAAAGTTGGAGGGGTGCAACACGAGGACTTCCCA
131 ATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCA
* * * * * *
189889804 GGAAGTCACCCATCCTAGTACTACTCTCGCCTAAGAACGCTTAACCGCGAAGTTTTGATGGGATC
196 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
* * * *
189889869 CGGTTCATTAATCCTGGGATGATCGCACCCGTTAA
261 C-GTGCATTAGTCCTGGTATGATCGCACCCGTCAA
* * ** * * *
189889904 TTTTTACTTATTCTATTTATATAAAGACTACCACTGATCTCACTTGAGCCTCGAATTTGAATTTA
1 TTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
* *
189889969 AATACGACCAAATAGCATTTCGAGCGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
66 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
*
189890034 ATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGAGGTGCAACACGAGGACTTCCCA
131 ATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCA
* * *
189890099 GGAGGTCACCCATCCTAGTACTATTCTCGACAAAGCGA-GCTTAACTGCGGAGTTCTGATGGGAT
196 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC-ACGCTTAACTGCGGAGTTCTGATGGGAT
* * *
189890163 CCAGCGCATTAGTGCTGGTATGATCGCACCCGTCAG
260 CC-GTGCATTAGTCCTGGTATGATCGCACCCGTCAA
* * *
189890199 TTCTTGGGCATTTTATTTATATAAAGGCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTA
1 TTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
* *
189890264 AATACGAACAAATAGCGTTTGGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
66 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
*
189890329 ATAAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCC
131 AT-AAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCC
* * *
189890394 AGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGTGGATTTCTGATGGGAT
195 AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
189890459 CCAGTGCATTAGTCCTGGTATGATCGCACCCGTCAA
260 CC-GTGCATTAGTCCTGGTATGATCGCACCCGTCAA
* * *
189890495 GTCTTGCGCATTCTATTTATAT-AAGGAC-AACCCTTATCGCACTTGAGCCTCGAATTTGAATTT
1 TTCTTGCGCATTCTATTTATATAAAGG-CTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT
* * *
189890558 AAATACGACGAAATAGCGTTTCGAGTGATTTATTTTGCAAATAAC-AATTAGTTAAACGATGAGA
65 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
*
189890622 TATAAAAAAATGGAAAAAAATTAAATGAGAATATATAATTGGAGGGGTGCAACACGAGGACTTCC
130 TATAAAAAAATGGAAAAAAATTAAATGAG-ATATAAAATTGGAGGGGTGCAACACGAGGACTTCC
* * * * *
189890687 CAGGAGGTCAGCTATCCTAGTACTACTCTCGCCCAAGGATGCTTAACTGTGGAGTTCTGATGGGA
194 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
* *
189890752 TCTGGTGCATTAGTCCAGGTATGATCGCACCCGTCAA
259 TC-CGTGCATTAGTCCTGGTATGATCGCACCCGTCAA
* * * * **
189890789 CTCTTGCACATT-TATTTATATAAA-GATGACCCCTTA-CTTTACTTGAGCCTCGAATTTGAATT
1 TTCTTGCGCATTCTATTTATATAAAGGCT-ACCCCTGATC-GCACTTGAGCCTCGAATTTGAATT
* *
189890851 TAAATACGACCAAATAGCGTTTCGAGTGATTTATTTAGTAAATAACTAATTAGTTAAACGACGAG
64 TAAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAG
* ** * *
189890916 ATATAAAAAAAAGGAAAAAAATTAAATGAGATACGAAATAGGAGGGGTGCAACACGAGGACTTCT
129 ATATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCC
** *
189890981 CACCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
194 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
189891046 TCCG
259 TCCG
189891050 ATTCTTGCAC
Statistics
Matches: 1538, Mismatches: 180, Indels: 32
0.88 0.10 0.02
Matches are distributed among these distances:
291 39 0.03
292 64 0.04
293 206 0.13
294 376 0.24
295 681 0.44
296 172 0.11
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (294 bp):
TTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
ATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCA
GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
CGTGCATTAGTCCTGGTATGATCGCACCCGTCAA
Found at i:189893077 original size:292 final size:293
Alignment explanation
Indices: 189892207--189893341 Score: 1610
Period size: 292 Copynumber: 3.9 Consensus size: 293
189892197 GGGATCCGAT
* * *
189892207 TCTTGCTCATTCTATTTATATAAAGGCTACCCATGATCGCACTTGAGCCTCAAATTTGAATTTAA
1 TCTTGCGCATTCTATTTATAT-AAGGCAACCC-TGATCGCACTTGAGCCTCGAATTTGAATTTAA
* *
189892272 ATACGACCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATAAGATA
64 ATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATA
* * * * *
189892337 T-AAAATACGGACAAAAATTAAATGAGATACAAAATAGGAGGGGTGCAACACGAGGACTTCTCAC
129 TAAAAAAAAGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCTCAG
189892401 CAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAACTGCGGAGTTCTGATGGGATC
194 CAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT-AACTGCGGAGTTCTGATGGGATC
* *
189892466 CAGCGCATTAGTGCTGGTATGATCGCACCCGTC-AG
258 CAGTGCATTAGTCCTGGTATGATCGCACCCGTCAAG
* * * *
189892501 TTCTTGGGCATT-TTTTTATATAAGGCTACCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAA
1 -TCTTGCGCATTCTATTTATATAAGGCAACCCTGATCGCACTTGAGCCTCGAATTTGAATTTAAA
* *
189892565 TACGAACAAATAGCGTTTGGAGTGATTTA-TTCGTAAATAACTAATTAGTTAAACGATGAGATAT
65 TACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATAT
* *
189892629 AAAAAAAAGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGG
130 AAAAAAAAGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCTCAGC
* * * * *
189892694 AGGTCACCCATCCTAGTACTACTCTCACCCAAGCACTCTTAACTGTGGATTTCTGATGGGATCCA
195 AAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCA
189892759 GTGCATTAGTCCTGGTATGATCGCACCCGTCAAG
260 GTGCATTAGTCCTGGTATGATCGCACCCGTCAAG
*
189892793 TCTTGCGCA-TCTATTTATATAAGGACAACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAAA
1 TCTTGCGCATTCTATTTATATAAGG-CAACCCTGATCGCACTTGAGCCTCGAATTTGAATTTAAA
* * * * *
189892857 TATGACGAAATAGCGTTTCGAGTGATTTATTTTGCAAATAACAAATTAGTTAAACGATGAGATAT
65 TACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATAT
* * *
189892922 AAAAAAATGGAAAAAAAATTAAATGAGAATATATAATTGGAGGGGTGCAACACGAGGACTTC-CA
130 AAAAAAAAGG-AAAAAAATTAAATGAG-ATATAAAATAGGAGGGGTGCAACACGAGGACTTCTCA
* * * * * *
189892986 GGAGGTCAGCCATCCTAGTACTACTCTCGCCCAAGGATGCTTAACTGTGGAGTTCTGATGGGAT-
193 GCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
** * *
189893050 TGGTGCATTAGT-CAGGTATGATCGCACCCGTCAAC
258 CAGTGCATTAGTCCTGGTATGATCGCACCCGTCAAG
* * * * **
189893085 TCTTGCACATTTTATTTATATAA-ACATGACCCTTA-CTTTACTTGAGCCTCGAATTTGAATTTA
1 TCTTGCGCATTCTATTTATATAAGGCA--ACCCTGATC-GCACTTGAGCCTCGAATTTGAATTTA
* *
189893148 AATACGACCAAATAGCATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGACGAGAT
63 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
**
189893213 ATAAAAAAAAGGAAAAAAATTAAATGAGATACGAAATAGGA-GGGTGCAACACGAGGACTTCTCA
128 ATAAAAAAAAGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCTCA
189893277 -CAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
193 GCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
189893341 C
258 C
189893342 GATTCTCATT
Statistics
Matches: 755, Mismatches: 72, Indels: 30
0.88 0.08 0.04
Matches are distributed among these distances:
290 78 0.10
291 119 0.16
292 260 0.34
293 173 0.23
294 84 0.11
295 41 0.05
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (293 bp):
TCTTGCGCATTCTATTTATATAAGGCAACCCTGATCGCACTTGAGCCTCGAATTTGAATTTAAAT
ACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATA
AAAAAAAGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCTCAGCA
AGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCAG
TGCATTAGTCCTGGTATGATCGCACCCGTCAAG
Found at i:189895671 original size:296 final size:294
Alignment explanation
Indices: 189893348--189896207 Score: 4058
Period size: 287 Copynumber: 9.9 Consensus size: 294
189893338 ATCCGATTCT
* * *
189893348 CATTCTATTTATATAAAGGCTACCCTGATCGCACTTGAGCCTCAAATTTGAATTTAAATACGACC
1 CATTCTATTTATATAAAGGCTACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAAATACGAAC
* *
189893413 AAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGAT-AGATATAAAAATA
66 AAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAA
* * * ** *
189893477 CGG-AAAAAATTAAATGAGATACAAAATAGGAGGGGTGCAACACGAGGACTTCTCACCAAGTCAC
131 TGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAC
* *
189893541 CCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAACTGCGGAGTTCTGATGGGATCCAGCGCAT
196 CCATCCTAGTACTACTCTCGCCCAAGCACGCTT-AACTGTGGAGTTCTGATGGGATCCAGTGCAT
* *
189893606 TAGTGCTGGTATGATCGCACCCGTC-AGTTCTTGGG
260 TAGTCCTGGTATGATCGCACCCGTCAAG-TCTTGCG
* *
189893641 CATTTTATTTATATAAAGGCTACCCTGATCG--CTTGAGCCTC-AATTTGAATTTAAATACGAAC
1 CATTCTATTTATATAAAGGCTACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAAATACGAAC
*
189893703 -AATAGCGTTTGGAGTGATTTATTTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAA
66 AAATAGCGTTTCGAGTGATTTA-TTTCGTAAATAACTAATTAGTTAAACGATGAGATAT-AAAAA
189893767 AATGGAAAAAAATTAAATGAGATATAAAATAGGA-GGGTGCAACACGAGGACTTCCCAGGAGGTC
129 AATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTC
* *
189893831 A-CCATCCTAGTACTA-TCTC-ACCAAGCACGCTTAACTGTGGATTTCTGAT-GGATCCAGTGCA
194 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGAGTTCTGATGGGATCCAGTGCA
189893892 TTAGTCCTGGTATGATCGCACCCGTCAAGTCTTGCG
259 TTAGTCCTGGTATGATCGCACCCGTCAAGTCTTGCG
* *
189893928 CATTCTATTTATAT-AAGGACAACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAAATATG-A
1 CATTCTATTTATATAAAGG-CTACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAAATACGAA
* *
189893991 CGAAATAGCGTTTCGAGTGATTTATTTTGCAAATAAC-AATTAGTTAAACGATGAGATAT-AAAA
65 C-AAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAA
189894054 AA-GGAAAAAAAATT-AATGAGAATATAATAAT-GGAGGGGTGCAACACGAGGACTTCCCAGGAG
129 AATGG-AAAAAAATTAAATGAG-ATATAA-AATAGGAGGGGTGCAACACGAGGACTTCCCAGGAG
* * * **
189894116 GTCAGCCATCCTAGTACTACTCTCGCCCAAGGATGCTTAACTGTGGAGTTCTGATGGGATCTGGT
191 GTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGAGTTCTGATGGGATCCAGT
* * *
189894181 GCATTAGTCCAGGTATGATCGCACCCGTCAACTCTTGCA
256 GCATTAGTCCTGGTATGATCGCACCCGTCAAGTCTTGCG
**
189894220 CATT-TATTTATATAAA--CATGACCCTTA-CTTTACTTGAGCCTCGAATTTGAATTTAAATACG
1 CATTCTATTTATATAAAGGC-T-ACCCTTATC-GCACTTGAGCCTCGAATTTGAATTTAAATACG
* *
189894281 -AC-CA-AGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGACGAGATATAAAA
63 AACAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAA
** * **
189894343 AAA-GGAAAAAAATTAAATGAGATACGAAATAGGAGGGGTGCAACACGAGGACTTCTCACCA-GT
128 AAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGT
* *
189894406 CACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTTCTGATGGGATCCAGCG
193 CACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGAG-TTCTGATGGGATCCAGTG
* *
189894471 CATTAGTGCTGGTATGATCGCA--CGTC-AGTTCTTGGG
257 CATTAGTCCTGGTATGATCGCACCCGTCAAG-TCTTGCG
* * *
189894507 CATTTTA-TT-TATAAAGGCTACCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGAAC
1 CATTCTATTTATATAAAGGCTACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAAATACGAAC
189894570 -AATAGCGTTT-GAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAA
66 AAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAA
189894633 TGG-AAAAAATTAAATGAGATAT-AAATAGGAGGGGTGCAA-AC-AGGACTT-CCAGGAGGTCAC
131 TGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAC
189894693 CCATCCTAGTACTACTCTCG-CCAAGCACGCTTAACTGTGGA-TTCTGATGGGATCCAGTGCATT
196 CCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGAGTTCTGATGGGATCCAGTGCATT
189894756 AGT-CTGGTATGATCGCACCCGTCAA-TCTTGCG
261 AGTCCTGGTATGATCGCACCCGTCAAGTCTTGCG
*
189894788 CATTCTATTTATAT-AAGGAC-ACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAAATACGAC
1 CATTCTATTTATATAAAGG-CTACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAAATACGAA
* *
189894851 CAAATAGCGTTTCGAGTGATTTATTTTGCAAATAA--AATTAGTTAAACGATGAGATAT-AAAAA
65 CAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAA
*
189894913 ATGGAAAAAAATTAAATGAGAATATAATAATTGGAGGGGTGCAACACGAGGACTT-CCAGGAGGT
130 ATGGAAAAAAATTAAATGAG-ATATAA-AATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGT
* * *
189894977 CA-CCATCCTAGTACTACTCTCGCCCAAGGATGCTTAACTGTGGAGTTCTGATGGGATCCGGTGC
193 CACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGAGTTCTGATGGGATCCAGTGC
* *
189895041 ATTAGTCCAGGTATGATCGCACCCGTCAA-TCTTGCA
258 ATTAGTCCTGGTATGATCGCACCCGTCAAGTCTTGCG
189895077 CATT-TATTTATATAAA--CATGACCC-T-TCGCACTTGAGCCTCGAATTTGAATTTAAATAC--
1 CATTCTATTTATATAAAGGC-T-ACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAAATACGA
189895135 -CAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAA
64 ACAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAA
* * ** *
189895199 AA-GGAAAAAAATTAAATGAGATA-CAAATAGGAGGGGTGCAACACGAGGACTTCTCACCAAGTC
129 AATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTC
* *
189895262 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAACTGCGGAGTTCTGATGGGATCCAGCGC
194 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT-AACTGTGGAGTTCTGATGGGATCCAGTGC
* *
189895327 ATTAGTGCTGGTATGATCGCACCCGTC-AGTTCTTGGG
258 ATTAGTCCTGGTATGATCGCACCCGTCAAG-TCTTGCG
* * *
189895364 CATTTTATTTATATAAAGGCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGAA
1 CATTCTATTTATATAAAGGCTA-CCCTTATCGCACTTGAGCCTCGAATTTGAATTTAAATACGAA
*
189895429 CAAATAGCGTTTGGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAA
65 CAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATAT-AAAAA
189895494 AATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTC
129 AATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTC
* *
189895559 ACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGTGGATTTCTGATGGGATCCAGTGCA
194 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGAGTTCTGATGGGATCCAGTGCA
189895624 TTAGTCCTGGTATGATCGCACCCGTCAAGTCTTGCG
259 TTAGTCCTGGTATGATCGCACCCGTCAAGTCTTGCG
* *
189895660 CATTCTATTTATAT-AAGGACAACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAAATATG-A
1 CATTCTATTTATATAAAGG-CTACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAAATACGAA
* * *
189895723 CGAAATAGCGTTTCGAGTGATTTATTTTGCAAATAACAAATTAGTTAAACGATGAGATATAAAAA
65 C-AAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAA
* *
189895788 AATGGAAAAAAAATTAAATGAGAATATATAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGG
129 AATGG-AAAAAAATTAAATGAG-ATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGG
* * * **
189895853 TCAGCCATCCTAGTACTACTCTCGCCCAAGGATGCTTAACTGTGGAGTTCTGATGGGATCTGGTG
192 TCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGAGTTCTGATGGGATCCAGTG
* * *
189895918 CATTAGTCCAGGTATGATCGCACCCGTCAACTCTTGCA
257 CATTAGTCCTGGTATGATCGCACCCGTCAAGTCTTGCG
* **
189895956 CATTTTATTTATATAAA--CATGACCCCTTA-CTTTACTTGAGCCTCGAATTTGAATTTAAATAC
1 CATTCTATTTATATAAAGGC-T-A-CCCTTATC-GCACTTGAGCCTCGAATTTGAATTTAAATAC
* * *
189896018 GACCAAATAGCATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGACGAGATATAAA
62 GAACAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAA
* ** * * *
189896083 AAAAAGGAAAAAAATTAAATGAGATACGAAATAGGAGGGGTGCAACACGAGGACTTCTCA-CAAG
127 AAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGG
*
189896147 TCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC
192 TCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGAGTTCTGATGGGATCC
189896208 GATTCTTGCT
Statistics
Matches: 2319, Mismatches: 159, Indels: 177
0.87 0.06 0.07
Matches are distributed among these distances:
280 14 0.01
281 45 0.02
282 88 0.04
283 68 0.03
284 94 0.04
285 52 0.02
286 185 0.08
287 264 0.11
288 186 0.08
289 218 0.09
290 101 0.04
291 155 0.07
292 84 0.04
293 57 0.02
294 129 0.06
295 150 0.06
296 258 0.11
297 170 0.07
298 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (294 bp):
CATTCTATTTATATAAAGGCTACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAAATACGAAC
AAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAA
TGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAC
CCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGAGTTCTGATGGGATCCAGTGCATT
AGTCCTGGTATGATCGCACCCGTCAAGTCTTGCG
Found at i:189897146 original size:295 final size:294
Alignment explanation
Indices: 189896211--189898236 Score: 2971
Period size: 295 Copynumber: 6.9 Consensus size: 294
189896201 GGGATCCGAT
* * *
189896211 TCTTGCTCATTCTATTTATATAAAGG-CTACCCATGATCGCACTTGAGCCTC-AATTTGAATTTA
1 TCTTGCGCATTTTATTTATATAAAGGAC-ACCC-TTATCGCACTTGAGCCTCGAATTTGAATTTA
* *
189896274 AATACGACCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATAAGAT
64 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
* * * * *
189896339 ATAAAAATACGGACAAAAATTAAATGAGATACAAAATAGGAGGGGTGCAACACGAGGACTTCTCA
129 ATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCA
** * *
189896404 CCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAACTGCGGAGTTCTGATGGGAT
194 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT-AACTGTGGAGTTCTGATGGGAT
* * **
189896469 CCAGCGCATTAGTGCTGGTATGATCGCACCCGTCAGT
258 CCAGTGCATTAGTCCTGGTATGATCGCACCCGTCAAC
* * *
189896506 TCTTGGGCATTTTATTTATATAAAGG-CTACCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAA
1 TCTTGCGCATTTTATTTATATAAAGGAC-ACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAA
* *
189896570 ATACGAACAAATAGCGTTTGGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATA
65 ATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATA
189896635 TAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAG
130 TAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAG
** *
189896700 GAGGTCACCCATCCTAGTACTACTCTCAACCAAGCACGCTTAACTGTGGATTTCTGAT-GGATCC
195 GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGAGTTCTGATGGGATCC
*
189896764 AGTGCATTAGTCCTGGTATGATCGCACCCGTCAAG
260 AGTGCATTAGTCCTGGTATGATCGCACCCGTCAAC
*
189896799 TCTTGCGCATTCTATTTATAT-AAGGACAACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAA
1 TCTTGCGCATTTTATTTATATAAAGGAC-ACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAA
* * * * * *
189896863 ATATGACGAAATAGCGTTTCGAGTGATTTATTTTGCAAATGACAAATTAGTTAAACGATGAGATA
65 ATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATA
* *
189896928 TAAAAAAATGGAAAAAAAATTAAATGAGAATATATAATTGGAGGGGTGCAACACGAGGACTTCCC
130 TAAAAAAATGG-AAAAAAATTAAATGAG-ATATAAAATAGGAGGGGTGCAACACGAGGACTTCCC
* * *
189896993 AGGAGGTCAGCCATCCTAGTACTACTCTCGCCCAAGGATGCTTAACTGTGGAGTTCTGATGGGAT
193 AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGAGTTCTGATGGGAT
** *
189897058 CTGGTGCATTAGTCCAGGTATGATCGCACCCGTCAAC
258 CCAGTGCATTAGTCCTGGTATGATCGCACCCGTCAAC
* * **
189897095 TCTTGCACATTTTATTTATATAAATGAC-CCCTTA-CTTTACTTGAGCCTCGAATTTGAATTTAA
1 TCTTGCGCATTTTATTTATATAAAGGACACCCTTATC-GCACTTGAGCCTCGAATTTGAATTTAA
*
189897158 ATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGACGAGATA
65 ATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATA
* ** * *
189897223 TAAAAAAAAGGAAAAAAATTAAATGAGATACGAAATAGGAGGGGTGCAACACGAGGACTTCTCAC
130 TAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAG
* * *
189897288 CAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAACTGCGGAGTTCTGATGGGATC
195 GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT-AACTGTGGAGTTCTGATGGGATC
* * **
189897353 CAGCGCATTAGTGCTGGTATGATCGCACCCGTCAGT
259 CAGTGCATTAGTCCTGGTATGATCGCACCCGTCAAC
* * *
189897389 TCTTGGGCATTTTATTTATATAAAGG-CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTA
1 TCTTGCGCATTTTATTTATATAAAGGAC-A-CCCTTATCGCACTTGAGCCTCGAATTTGAATTTA
* *
189897453 AATACGAACAAATAGCGTTTGGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
64 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
189897518 ATAAAAAAATGG-AAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCA
129 ATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCA
* *
189897582 GGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGTGGATTTCTGATGGGATC
194 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGAGTTCTGATGGGATC
*
189897647 CAGTGCATTAGTCCTGGTATGATCGCACCCGTCAAG
259 CAGTGCATTAGTCCTGGTATGATCGCACCCGTCAAC
*
189897683 TCTTGCGCATTCTATTTATAT-AAGGACAACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAA
1 TCTTGCGCATTTTATTTATATAAAGGAC-ACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAA
* * * * *
189897747 ATATGACGAAATAGCGTTTCGAGTGATTTATTTTGCAAATAACAAATTAGTTAAACGATGAGATA
65 ATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATA
* *
189897812 TAAAAAAATGGAAAAAAATTAAATGAGAATATATAATTGGAGGGGTGCAACACGAGGACTTCCCA
130 TAAAAAAATGGAAAAAAATTAAATGAG-ATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCA
* *
189897877 GGAGGTCA-CCATCCTAGTACTACTCTCGCCCAAGGATGCTTAACTGTGGAGTTCTGATGGGATC
194 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGAGTTCTGATGGGATC
** *
189897941 TGGTGCATTAGTCCAGGTATGATCGCACCCGTCAAC
259 CAGTGCATTAGTCCTGGTATGATCGCACCCGTCAAC
* * **
189897977 TCTTGCACATTTTATTTATATAAACATGAC-CCCTTA-CTTTACTTGAGCCTCGAATTTGAATTT
1 TCTTGCGCATTTTATTTATAT-AA-AGGACACCCTTATC-GCACTTGAGCCTCGAATTTGAATTT
* *
189898040 AAATACGACCAAATAGCATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGACGAGA
63 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
* ** *
189898105 TATAAAAAAAAGGAAAAAAATTAAATGAGATACGAAATAGGAGGGGTGCAACACGAGGACTTCTC
128 TATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCC
** * *
189898170 ACCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
193 AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGAGTTCTGATGGGAT
189898235 CC
258 CC
189898237 GATTCTTGCT
Statistics
Matches: 1559, Mismatches: 152, Indels: 40
0.89 0.09 0.02
Matches are distributed among these distances:
292 4 0.00
293 334 0.21
294 369 0.24
295 684 0.44
296 158 0.10
297 10 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (294 bp):
TCTTGCGCATTTTATTTATATAAAGGACACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAAA
TACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATAT
AAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGG
AGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGAGTTCTGATGGGATCCA
GTGCATTAGTCCTGGTATGATCGCACCCGTCAAC
Found at i:189897570 original size:588 final size:586
Alignment explanation
Indices: 189896211--189898236 Score: 2924
Period size: 588 Copynumber: 3.4 Consensus size: 586
189896201 GGGATCCGAT
* * * *
189896211 TCTTGCTCATTCTATTTATATAAAGGCTACCCATGATCGCACTTGAGCCTC-AATTTGAATTTAA
1 TCTTGCGCATTTTATTTATATAAAGGCTACCCCTTATCGCACTTGAGCCTCGAATTTGAATTTAA
* *
189896275 ATACGACCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATAAGATA
66 ATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATA
* * * * *
189896340 TAAAAATACGGACAAAAATTAAATGAGATACAAAATAGGAGGGGTGCAACACGAGGACTTCTCAC
131 TAAAAAAATGGA-AAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAG
* * *
189896405 CAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAACTGCGGAGTTCTGATGGGATC
195 GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT-AACTGTGGAGTTCTGATGGGATC
* * ** **
189896470 CAGCGCATTAGTGCTGGTATGATCGCACCCGTCAGTTCTTGGGCATTTTATTTATATAAAGG-CT
259 CAGTGCATTAGTCCTGGTATGATCGCACCCGTCAACTCTTGCACATTTTATTTATATAAAGGAC-
* * * * *
189896534 ACCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGAACAAATAGCGTTTGGAGTGATTT
323 -CCCTTATCTCACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCGTTTCGAGTGATTT
*
189896599 ATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATGGAAAAAAATTAAATGAGAT
387 ATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAAAGGAAAAAAATTAAATGAGAT
**
189896664 ATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCAA
452 AT-AAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGC
* *
189896729 CCAAGCACGCTTAACTGTGGATTTCTGAT-GGATCCAGTGCATTAGTCCTGGTATGATCGCACCC
516 CCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCAGTGCATTAGTCCTGGTATGATCGCACCC
189896793 GTCAAG-
581 GTC-AGC
* *
189896799 TCTTGCGCATTCTATTTATAT-AAGGAC-AACCCTTATCGCACTTGAGCCTCGAATTTGAATTTA
1 TCTTGCGCATTTTATTTATATAAAGG-CTACCCCTTATCGCACTTGAGCCTCGAATTTGAATTTA
* * * * * *
189896862 AATATGACGAAATAGCGTTTCGAGTGATTTATTTTGCAAATGACAAATTAGTTAAACGATGAGAT
65 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
* *
189896927 ATAAAAAAATGGAAAAAAAATTAAATGAGAATATATAATTGGAGGGGTGCAACACGAGGACTTCC
130 ATAAAAAAATGG--AAAAAATTAAATGAG-ATATAAAATAGGAGGGGTGCAACACGAGGACTTCC
* * *
189896992 CAGGAGGTCAGCCATCCTAGTACTACTCTCGCCCAAGGATGCTTAACTGTGGAGTTCTGATGGGA
192 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGAGTTCTGATGGGA
** * *
189897057 TCTGGTGCATTAGTCCAGGTATGATCGCACCCGTCAACTCTTGCACATTTTATTTATATAAATGA
257 TCCAGTGCATTAGTCCTGGTATGATCGCACCCGTCAACTCTTGCACATTTTATTTATATAAAGGA
*
189897122 CCCCTTA-CTTTACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCGTTTCGAGTGATT
322 CCCCTTATC-TCACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCGTTTCGAGTGATT
*
189897186 TATTTCGTAAATAACTAATTAGTTAAACGACGAGATATAAAAAAAAGGAAAAAAATTAAATGAGA
386 TATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAAAGGAAAAAAATTAAATGAGA
* * ** *
189897251 TACGAAATAGGAGGGGTGCAACACGAGGACTTCTCACCAAGTCACCCATCCTAGTACTACTCTCG
451 TA-TAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCG
* *
189897316 CCCAAGCACGCTTAAACTGCGGAGTTCTGATGGGATCCAGCGCATTAGTGCTGGTATGATCGCAC
515 CCCAAGCACGCTT-AACTGCGGAGTTCTGATGGGATCCAGTGCATTAGTCCTGGTATGATCGCAC
*
189897381 CCGTCAGT
579 CCGTCAGC
* * *
189897389 TCTTGGGCATTTTATTTATATAAAGGCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAA
1 TCTTGCGCATTTTATTTATATAAAGGCTACCCCTTATCGCACTTGAGCCTCGAATTTGAATTTAA
* *
189897454 ATACGAACAAATAGCGTTTGGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATA
66 ATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATA
189897519 TAAAAAAATGGAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGG
131 TAAAAAAATGGAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGG
* *
189897584 AGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGTGGATTTCTGATGGGATCCA
196 AGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGAGTTCTGATGGGATCCA
* * *
189897649 GTGCATTAGTCCTGGTATGATCGCACCCGTCAAGTCTTGCGCATTCTATTTATAT-AAGGACAAC
261 GTGCATTAGTCCTGGTATGATCGCACCCGTCAACTCTTGCACATTTTATTTATATAAAGGAC--C
* * *
189897713 CCTTATCGCACTTGAGCCTCGAATTTGAATTTAAATATGACGAAATAGCGTTTCGAGTGATTTAT
324 CCTTATCTCACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCGTTTCGAGTGATTTAT
* * * *
189897778 TTTGCAAATAACAAATTAGTTAAACGATGAGATATAAAAAAATGGAAAAAAATTAAATGAGAATA
389 TTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAAAGGAAAAAAATTAAATGAG-ATA
*
189897843 TATAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCA-CCATCCTAGTACTACTCTCGCC
453 TA-AATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * * ** *
189897907 CAAGGATGCTTAACTGTGGAGTTCTGATGGGATCTGGTGCATTAGTCCAGGTATGATCGCACCCG
517 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCAGTGCATTAGTCCTGGTATGATCGCACCCG
*
189897972 TCAAC
582 TCAGC
* **
189897977 TCTTGCACATTTTATTTATATAAA--CATGACCCCTTA-CTTTACTTGAGCCTCGAATTTGAATT
1 TCTTGCGCATTTTATTTATATAAAGGC-T-ACCCCTTATC-GCACTTGAGCCTCGAATTTGAATT
* *
189898039 TAAATACGACCAAATAGCATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGACGAG
63 TAAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAG
* ** *
189898104 ATATAAAAAAAAGGAAAAAAATTAAATGAGATACGAAATAGGAGGGGTGCAACACGAGGACTTCT
128 ATATAAAAAAATGG-AAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCC
** * *
189898169 CACCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
192 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGAGTTCTGATGGGA
189898234 TCC
257 TCC
189898237 GATTCTTGCT
Statistics
Matches: 1290, Mismatches: 126, Indels: 43
0.88 0.09 0.03
Matches are distributed among these distances:
586 1 0.00
587 32 0.02
588 609 0.47
589 377 0.29
590 165 0.13
591 106 0.08
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (586 bp):
TCTTGCGCATTTTATTTATATAAAGGCTACCCCTTATCGCACTTGAGCCTCGAATTTGAATTTAA
ATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATA
TAAAAAAATGGAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGG
AGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGAGTTCTGATGGGATCCA
GTGCATTAGTCCTGGTATGATCGCACCCGTCAACTCTTGCACATTTTATTTATATAAAGGACCCC
TTATCTCACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCGTTTCGAGTGATTTATTT
CGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAAAGGAAAAAAATTAAATGAGATATAA
ATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
CACGCTTAACTGCGGAGTTCTGATGGGATCCAGTGCATTAGTCCTGGTATGATCGCACCCGTCAG
C
Found at i:189899144 original size:296 final size:294
Alignment explanation
Indices: 189898251--189899382 Score: 1603
Period size: 295 Copynumber: 3.8 Consensus size: 294
189898241 CTTGCTCATC
*
189898251 TATTTATATAAAGGCTACCCATGATCGCACTTGAGCCTCAAATTTGAATTTAAATACGACCAAAT
1 TATTTATATAAAGGCAACCC-TGATCGCACTTGAGCCTCAAATTTGAATTTAAATACGACCAAAT
* * * *
189898316 AACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATAAGATATAAAAATACGGA
65 AGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATGGA
* * *
189898381 CAAAAATTAAATGAGATACAAAATAGGAGGGGTGCAACACGAGGACTTCTCACCAAGTCACCCAT
130 AAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCACCAAGTCACCCAT
* *
189898446 CCTAGTACTACTCTCGCCCAAGCACGCTTAAACTACGGAGTTCTGATGGGATCCAGCGCATTAGT
195 CCTAGTACTACTCTCGCCCAAGCACGCTT-AACTGCGGAGTTCTGATGGGATCCAGTGCATTAGT
* ** *
189898511 GCTGGTATGATCGCACCCGTCAGTTCTTGGGCATTT
259 CCTGGTATGATCGCACCCGTCAACTCTTGCGCATTT
* * *
189898547 TATTTATATAAAGGCTACCCTGATCGCGCTTGAGCCTCAAATTTGAATTTAAATACGAACAAATA
1 TATTTATATAAAGGCAACCCTGATCGCACTTGAGCCTCAAATTTGAATTTAAATACGACCAAATA
*
189898612 GCGTTTGGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAAATGGA
66 GCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATAT-AAAAAAATGGA
** *
189898677 AAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
130 AAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCACCAAGTCACCCAT
** * * *
189898742 CCTAGTACTACTCTCAACCAAGCACGCTTAACTGTGGATTTCTGATTGGATCCAGTGCATTAGTC
195 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCAGTGCATTAGTC
* *
189898807 CTGGTATGATCGCACCCGTCAAGTCTTGCGCATTC
260 CTGGTATGATCGCACCCGTCAACTCTTGCGCATTT
* * * *
189898842 TATTTATAT-AAGGACAACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAAATATGACGAAAT
1 TATTTATATAAAGG-CAACCCTGATCGCACTTGAGCCTCAAATTTGAATTTAAATACGACCAAAT
* * * *
189898906 AGCGTTTCGAGTGATTTATTTTGCAAATGACAAATTAGTTAAACGATGAGATATAAAAAAATGGA
65 AGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATGG-
* * ** * *
189898971 AAAAAAATTAAATGAGAATATATAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAGCC
129 AAAAAAATTAAATGAG-ATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCACCAAGTCACCC
* * * **
189899036 ATCCTAGTACTACTCTCGCCCAAGGATGCTTAACTGTGGAGTTCTGATGGGATCTGGTGCATTAG
193 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCAGTGCATTAG
* *
189899101 TCCAGGTATGATCGCACCCGTCAACTCTTGCACATTT
258 TCCTGGTATGATCGCACCCGTCAACTCTTGCGCATTT
* ** *
189899138 TATTTATATAAA--CATGACCCCTTA-CTTTACTTGAGCCTCGAATTTGAATTTAAATACGACCA
1 TATTTATATAAAGGCA--A-CCCTGATC-GCACTTGAGCCTCAAATTTGAATTTAAATACGACCA
* *
189899200 AATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGACGAGATATAAAAAAAA
62 AATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAAT
** *
189899265 GG-AAAAAATTAAATGAGATACGAAATAGGAGGGGTGCAACACGAGGACTTCTCACCAAGTCA-C
127 GGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCACCAAGTCACC
189899328 CATCCTAGTACTACTCTCG-CCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC
192 CATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC
189899383 GATTCTTGCC
Statistics
Matches: 753, Mismatches: 74, Indels: 22
0.89 0.09 0.03
Matches are distributed among these distances:
292 32 0.04
293 20 0.03
294 53 0.07
295 286 0.38
296 261 0.35
297 101 0.13
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (294 bp):
TATTTATATAAAGGCAACCCTGATCGCACTTGAGCCTCAAATTTGAATTTAAATACGACCAAATA
GCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATGGAA
AAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCACCAAGTCACCCATC
CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCAGTGCATTAGTCC
TGGTATGATCGCACCCGTCAACTCTTGCGCATTT
Found at i:189900451 original size:295 final size:292
Alignment explanation
Indices: 189899907--189901046 Score: 1587
Period size: 295 Copynumber: 3.9 Consensus size: 292
189899897 GGGATCCGAT
* * * *
189899907 TCTTGCACATTCTATTTATATAAAGGCTACCCATGATCGCACTTGAGCCT-TAATTTGAATTTAA
1 TCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGAGCCTCGAATTTGAATTTAA
* * *
189899971 ATACGACCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATAAGATA
66 ATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAAATAATTAGTTAAACGATGAGATA
* * * * *
189900036 TAAAATACGGACAAAAATTAAATGAGATACAAATAGGAGGGGTGCAACACGAGGACTTCTCACCA
131 TAAAAAATGGAAAAAAATTAAATGAGATAAAAATAGGAGGGGTGCAACACGAGGACTTCCCACCA
*
189900101 AGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTACGGAGTTCTGATGGGATCCAG
196 AGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCAG
* *
189900166 CGCATTAGTGCTGGTAAT-ATCGCACCCGTCAG
261 TGCATTAGTCCTGGT-ATGATCGCACCCGTCAG
* * * *
189900198 TTCTTGGGCATTTTATTTATATAAAGGCTACCCCTAATCGCGCTTGAGCCTCGAATTTGAATTTA
1 -TCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGAGCCTCGAATTTGAATTTA
* *
189900263 AATACGACCAAATAGCGTTTTGGAGTGATTTA-TTCGTAAATAAATAATTAGTTAAATGATGAGA
65 AATACGACCAAATAGCG-TTTCGAGTGATTTATTTCGTAAATAAATAATTAGTTAAACGATGAGA
189900327 TATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCC
129 TAT-AAAAAATGGAAAAAAATTAAATGAGATA-AAAATAGGAGGGGTGCAACACGAGGACTTCCC
** * * * * *
189900392 AGGAGGTCACCTATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGTGGATTTCTGATGGGAT
192 ACCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
*
189900457 CCAGTGCATTAGTCCTGGTATGATCGCACCTGTCAAG
257 CCAGTGCATTAGTCCTGGTATGATCGCACCCGTC-AG
*
189900494 TCTTGCGCATTCTATTTATAT-AAGGAC-AACCCTTATCGCACTTGAGCCTCGAATTTGAATTTA
1 TCTTGCGCATTCTATTTATATAAAGG-CTACCCCTTATCGCACTTGAGCCTCGAATTTGAATTTA
* *
189900557 AATACGACGAAATAGCGTTTCGAGTGATTTATTTCGCAAATAAA-AATTAGTTAAACGATGAGAT
65 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAAATAATTAGTTAAACGATGAGAT
* * *
189900621 ATAAAAAATGGAAAAAAAAAATTAAATGAGAATATATAATTGGA-GGGCGCAACACGAGGACTTC
130 ATAAAAAATGG---AAAAAAATTAAATGAG-ATA-AAAATAGGAGGGGTGCAACACGAGGACTTC
** * * * *
189900685 CCAGGAGGTCAGCCATCCTAGTACTACTCTCGCCCAAGGACGCTTAACTGTGGAGTTCTGATGGG
190 CCACCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
** * *
189900750 ATCTGGTGCATTAGTCCAGGTATGATCGCACCCGTCAAC
255 ATCCAGTGCATTAGTCCTGGTATGATCGCACCCGTC-AG
* * * **
189900789 TCTTGCGCATTTTATTTATATAAAGACGACCCCTTAT-TTACTTGAGCCTCGAATTTGAATTTAA
1 TCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGAGCCTCGAATTTGAATTTAA
* *
189900853 ATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGACGAGATA
66 ATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAAATAATTAGTTAAACGATGAGATA
* * *
189900918 TAAAAAAAAGG-AAAAAATTAAATGAGATACAAATAGGAGGGGTGCAACACGAGGACTTCTCACC
131 T-AAAAAATGGAAAAAAATTAAATGAGATAAAAATAGGAGGGGTGCAACACGAGGACTTCCCACC
189900982 AAGTCACCCATCCTAGTACTACTTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC
195 AAGTCACCCATCCTAGTACTAC-TCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC
189901047 GATTCTTGCA
Statistics
Matches: 758, Mismatches: 72, Indels: 35
0.88 0.08 0.04
Matches are distributed among these distances:
291 6 0.01
292 97 0.13
293 148 0.20
294 104 0.14
295 350 0.46
296 45 0.06
297 8 0.01
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (292 bp):
TCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGAGCCTCGAATTTGAATTTAA
ATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAAATAATTAGTTAAACGATGAGATA
TAAAAAATGGAAAAAAATTAAATGAGATAAAAATAGGAGGGGTGCAACACGAGGACTTCCCACCA
AGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCAG
TGCATTAGTCCTGGTATGATCGCACCCGTCAG
Found at i:189902571 original size:287 final size:294
Alignment explanation
Indices: 189901615--189904276 Score: 2059
Period size: 295 Copynumber: 8.9 Consensus size: 294
189901605 TCTTCCGCAT
* *
189901615 TCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT-AATACGACCAA
1 TCTATTTATATAAAGACTACCACTGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCAA
*
189901679 ATAG-AGTTTCAAGTGATTTATTTCGTAAATAACTAATTAGTTAAATGATGAGATA-AAAAAAAT
66 ATAGCA-TTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAATGATGAGATATAAAAAAAT
* *
189901742 GG-AAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACA-GAGGAACTTCCTAGAAGGTCAC
130 GGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGG-ACTTCCCAGGAGGTCAC
* * * * *
189901805 CCA-CCTAGCACTACTCTCACCCAAGCACGATTAATTGCGGAG-T-TAATGGGATCCGATGCATT
194 CCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCG-TGCATT
* ***
189901867 AGTGCTGGTATGATCGCACCAGTCAATTCTTGCGCAA
258 AGTGCTGGTATGATCGCACCCGTCAATTCTTGCTTTA
* *
189901904 TCTATTTATATAAAG-CTACC-CTTGATTG-ACTTGAGCCTCGAATTTGAATTTAAATATGACCA
1 TCTATTTATATAAAGACTACCAC-TGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCA
* * * * *
189901966 AATAGCGTTTCGAGTGATTTATTTCATAAATAAATAATCAGTTAAACT-ATGACATAT-AAAAAA
65 AATAGCATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAA-TGATGAGATATAAAAAAA
* * * * *
189902029 GGGAAAAAAA-TGAATGAGATATAAAATTGCAGGGGTGCAACATGAGGACTTCCCCAAGAGGTCA
129 TGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTT-CCCAGGAGGTCA
* * *
189902093 CCCATCCCAGGACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGACGGGATCCGTTGCAT
193 CCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCG-TGCAT
* *
189902158 TAGTGTTGGTATGATCGCACCTGTCAATTCTTGCTTTTA
257 TAGTGCTGGTATGATCGCACCCGTCAATTCTTGC-TTTA
* * *
189902197 TTCTATTTATGTAAAGGCTACCACTGATCGCACTTGAGCCTCGAATTTGAATTTAAATATGACCA
1 -TCTATTTATATAAAGACTACCACTGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCA
* *
189902262 AATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAATGATGAGATATAAAAAAAT
65 AATAGCATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAATGATGAGATATAAAAAAAT
*
189902327 GGAAAAAAATTAAATGA-ATATAAAGTTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACC
130 GGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACC
* * * * *
189902391 CATCCTAGTACTACTCTCGCCTAAG-ACGCTTAACCGCGAAGTTTTGATGGGATCCG-GCATTAA
195 CATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGTGCATTAG
* * * * *
189902454 TCCTGGGATGATCGCACCCGTTAATTTTTAC-TTA
260 TGCTGGTATGATCGCACCCGTCAATTCTTGCTTTA
* *
189902488 T-T-TTTATAT-AAGACTACCACTTATCTCACTTGAGCCTCGAATTTGAATTTAAATACGACCAA
1 TCTATTTATATAAAGACTACCACTGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCAA
* *
189902550 ATAGCATTTCGAGCGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATG
66 ATAGCATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAATGATGAGATATAAAAAAATG
*
189902615 GAAAAAAATTAAATGAGATAT-AAATTGGAGAGGTGCAACACGAGGACTTCCCAGGAGGTCA-CC
131 GAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
* * * *
189902678 ATCCTAGTACTATTCTCGACAAAGCGA-GCTTAACTGCGGAGTTCTGATGGGATCCAGCGCATTA
196 ATCCTAGTACTACTCTCGCCCAAGC-ACGCTTAACTGCGGAGTTCTGATGGGATCC-GTGCATTA
* *
189902742 GTGCTGGTATGATCGCACCCGTCAGTTCTTGGGCATT-
259 GTGCTGGTATGATCGCACCCGTCAATTCTT--GCTTTA
** * * **
189902779 T-TATTTATATAAGGCTAGTACTACTCTCCCAAGGAT-GCTTAACTGTGGAG-TTTG-ATGGGAA
1 TCTATTTATATAA----AG-ACTA-----CCACTGATCGC---ACT-T-GAGCCTCGAATTTGAA
** * * * ** * * ** * *
189902840 TGGTGCATTA-GTCCAGGTATGATCGCACCCTCAACTCTTGCACTTTATTTATATAAACATGACC
51 T--TTAAATACGACCA---A--ATAGCA-TTTCGA---GTG-A-TTTATTT-CGT-AA-ATAACT
** * ** * ** * *
189902904 CCTTACTTTACTTGAGCCTCGA-ATTTGAATTTAAATACGACCAAATAGCATTTCGAGTGATTTA
100 AATTA-GTTAAATGA---T-GAGATAT-AA-AAAAAT-GGA--AAA-A--AATT--A---A---A
* * * * * ** * ** * ** * *
189902968 TTTCGTAAATAACTAATTAGTTAAACGACGAGATATAAAAAAAAGGAAAAAAATT-AAATGAGAT
144 --T-G-AGAT-A-TAA--AATT---GGA-GGGGT-GCAACACGAGG-----ACTTCCCAGGAGGT
** ** ** * * * * * * * * * *
189903032 -ACGAAATAGGGGGTGCAACACGAGGACTTCTC-ACCAAGTCACCCAT-CCT-AGTACTACT-CT
191 CAC-CCAT----CCT--AGTAC---TAC-TCTCGCCCAAG-CACGCTTAACTGCGGAGTTCTGAT
* * ** * * * * * * **
189903092 -AG-CCCAAGCACGCTTAACTGCGGAGTTCTGATGGTATCCG---ATTCTTGC-ACA
244 GGGATCCGTGCA---TT-AGTGCTG-G-TATGATCGCACCCGTCAATTCTTGCTTTA
* *
189903143 TTCTATTTATATAAAGGCTACC-CATGATCG-ACTTGAGCCTCAAATTTGAATTTAAATACGACC
1 -TCTATTTATATAAAGACTACCAC-TGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACC
* * * * * *
189903206 AAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATAAGGTATAAAAATA
64 AAATAGCATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAATGATGAGATATAAAAAAA
* * * * * ** *
189903271 CGGACAAAAATTAAATGAGATACAAAATAGGAGGGGTGCAACACGAGGACTTCTCACCAAGTCAC
129 TGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAC
*
189903336 CCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAACTGCGGAGTTCTGATGGGATCCAGCGCAT
194 CCATCCTAGTACTACTCTCGCCCAAGCACGCTT-AACTGCGGAGTTCTGATGGGATCC-GTGCAT
* ***
189903401 TAGTGCTGGTATGATCGCACCCGTCAGTTCTTG-GGCA
257 TAGTGCTGGTATGATCGCACCCGTCAATTCTTGCTTTA
* * * * *
189903438 TTTATTTATATAAAGGCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGAACAA
1 TCTATTTATATAAAGACTACCACTGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCAA
* *
189903503 ATAGCGTTTGGAGTGATTTATTTCGTAAATAACTAATTAGTTAAATGATGAGATATAAAAAAATG
66 ATAGCATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAATGATGAGATATAAAAAAATG
*
189903568 GAAAAAAATTAAATGAGATATAAAA-AGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
131 GAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
* * *
189903632 ATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGTGGATTTCTGAT-GGATCCAGTGCATTAG
196 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC-GTGCATTAG
* * **
189903696 TCCTGGTATGATCGCACCCGTCAAGTCTTGC-GCA
260 TGCTGGTATGATCGCACCCGTCAATTCTTGCTTTA
* * * * *
189903730 TTCTATTTATATAAGGACAACC-CTTATCGCACTTGAGCCTCGAATTTGAATTTAAATATGACGA
1 -TCTATTTATATAAAGACTACCACTGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCA
* * * * * *
189903794 AATAGCGTTTCGAGTGATTTATTTTGCAAATGACAAATTAGTTAAACGATGAGATAT-AAAAAAT
65 AATAGCATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAATGATGAGATATAAAAAAAT
* *
189903858 GGAAAAAAAATTAAATGAGAATATATAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTTA
130 GG-AAAAAAATTAAATGAG-ATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCA
* * * * *
189903923 GCCATCCTAGTACTACTCTCGCCCAAGGATGCTTAACTGTGGAGTTCTGATGGGATCTGGTGCAT
193 CCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC-CGTGCAT
* ** * * *
189903988 TAGTCCAAGTATGATCGCACCCCTCAACTCTTGCACATT-
257 TAGTGCTGGTATGATCGCACCCGTCAATTCTTG--CTTTA
* * * **
189904027 T-TATTTATATAAACA-TGACCCCTTA-CTTTACTTGAGCCTCGAATTTGAATTTAAATACGACC
1 TCTATTTATATAAAGACT-ACCACTGATC-GCACTTGAGCCTCGAATTTGAATTTAAATACGACC
* * *
189904089 AAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGACGAGATATAAAAAAA
64 AAATAGCATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAATGATGAGATATAAAAAAA
* ** * * ** *
189904154 AGGAAAAAAATTAAATGAGATACGAAATAGGAGGGGTGCAACACGAGGACTTCTCACCAAGTCAC
129 TGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAC
189904219 CCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCG
194 CCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCG
189904277 ATTCTTGCCC
Statistics
Matches: 1891, Mismatches: 323, Indels: 313
0.75 0.13 0.12
Matches are distributed among these distances:
286 23 0.01
287 213 0.11
288 120 0.06
289 70 0.04
290 35 0.02
291 25 0.01
292 222 0.12
293 74 0.04
294 196 0.10
295 311 0.16
296 226 0.12
297 59 0.03
298 13 0.01
300 3 0.00
301 5 0.00
302 3 0.00
303 5 0.00
305 15 0.01
306 10 0.01
307 9 0.00
309 1 0.00
310 2 0.00
311 5 0.00
312 5 0.00
313 1 0.00
314 3 0.00
315 2 0.00
316 2 0.00
317 7 0.00
318 2 0.00
319 2 0.00
320 7 0.00
321 6 0.00
324 5 0.00
325 4 0.00
326 7 0.00
327 2 0.00
328 1 0.00
329 5 0.00
330 1 0.00
331 2 0.00
332 5 0.00
333 3 0.00
334 4 0.00
337 6 0.00
338 7 0.00
339 2 0.00
340 2 0.00
341 7 0.00
342 2 0.00
343 3 0.00
344 3 0.00
345 1 0.00
346 4 0.00
347 4 0.00
349 4 0.00
351 7 0.00
352 8 0.00
353 13 0.01
354 6 0.00
356 5 0.00
357 2 0.00
358 5 0.00
359 5 0.00
361 3 0.00
362 2 0.00
363 4 0.00
364 4 0.00
365 5 0.00
366 19 0.01
367 10 0.01
368 10 0.01
369 17 0.01
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (294 bp):
TCTATTTATATAAAGACTACCACTGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCAA
ATAGCATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAATGATGAGATATAAAAAAATG
GAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGTGCATTAGT
GCTGGTATGATCGCACCCGTCAATTCTTGCTTTA
Found at i:189906152 original size:294 final size:294
Alignment explanation
Indices: 189904836--189906865 Score: 2825
Period size: 295 Copynumber: 6.9 Consensus size: 294
189904826 TGGGATTCGG
* *
189904836 TTCTTTCGCATTCTATTTATATAAAGGCTACCCCTAATCGCACTTGAGCCTCGAATTTGAATTTA
1 TTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
* * *
189904901 CATACGACCAAATAGCGTTTCAAGTGATTTATTTCGTAAATAACTAATTAGTTAAATGATGAGAT
66 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
* * *
189904966 A-AAAAAAATGGGAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGAACTTCCTA
131 ATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCA
* * * ** * * *
189905030 GAAGGTCACCCACCCTAGCACTACTCTCAACCAAGCACGATTAATTGCGGAGTTCTAATGGGATC
196 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
* * *
189905095 CGATGCATTAGTGCTGGTGTGATCGCACCAGTCAA
261 CG-TGCATTAGTCCTGGTATGATCGCACCCGTCAA
* * * * *
189905130 TTCTTGCGCAATCTATTTATATAAAGCCTACCCTTGATTGAACTTGAGCCTCGAATTTGAATTTA
1 TTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
* * * * * * *
189905195 AATATGACCAAATAGCGTTTTGAGTGATTTATTTCATAAATAAATAATCAGTTAAACTATGACAT
66 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
* * * **
189905260 ATAAAAAAAGGGAAAAAAATGAAATGAGATATAAAATTGCAGGGGTGCAACTTGAGGACTTCCCA
131 ATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCA
* * * *
189905325 AGAGGTCACCTATCCCAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGACGGGATC
196 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
** *
189905390 CGTTGCATTAGTGTTGGTATGATCGCACCTGTCAA
261 CG-TGCATTAGTCCTGGTATGATCGCACCCGTCAA
** * *
189905425 TTCTTGCTTATTCTATTTATGTAAAGGCTACCACTGATCGCACTTGAGCCTCGAATTTGAATTTA
1 TTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
* * * *
189905490 AATATGACCAAATAACGTTTCGAGTGATTTATTTTGTAAATAACTAATTAGTTAAATGATGAGAT
66 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
* *
189905555 ATAAAAAAATGGAAAAAAATTAAATGAAATATAAAGTTGGAGGGGTGCAACACGAGGACTTCCCA
131 ATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCA
* * * * * *
189905620 GGAAGTCACCCATCCTAGTACTACTCTCGCCTAAGAACGCTTAACCGCGAAGTTTTGATGGGATC
196 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
* * * *
189905685 CGGTTCATTAATCCTGGGATGATCGCACCCGTTAA
261 C-GTGCATTAGTCCTGGTATGATCGCACCCGTCAA
* * ** * * *
189905720 TTTTTACTTATTCTATTTATATAAAGACTACCACTGATCTCACTTGAGCCTCGAATTTGAATTTA
1 TTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
* *
189905785 AATACGACCAAATAGCATTTCGAGCGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
66 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
*
189905850 AT-AAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGAGGTGCAACACGAGGACTTCCCA
131 ATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCA
* * *
189905914 GGAGGTCACCCATCCTAGTACTATTCTCGACAAAGCGA-GCTTAACTGCGGAGTTCTGATGGGAT
196 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC-ACGCTTAACTGCGGAGTTCTGATGGGAT
* * *
189905978 CCAGCGCATTAGTGCTGGTATGATCGCACCCGTCAG
260 CC-GTGCATTAGTCCTGGTATGATCGCACCCGTCAA
*
189906014 TTCTTG-GCATT-TATTTATATAAAGGCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTA
1 TTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
* *
189906077 AATACGAACAAATAGCGTTTGGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
66 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
*
189906142 ATAAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCC
131 AT-AAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCC
* * *
189906207 AGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGTGGATTTCTGATGGGAT
195 AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
189906272 CCAGTGCATTAGTCCTGGTATGATCGCACCCGTCAA
260 CC-GTGCATTAGTCCTGGTATGATCGCACCCGTCAA
* * *
189906308 GTCTTGCGCATTCTATTTATAT-AAGGAC-AACCCTTATCGCACTTGAGCCTCGAATTTGAATTT
1 TTCTTGCGCATTCTATTTATATAAAGG-CTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT
* * * *
189906371 AAATACGACGAAATAGCGTTTCGAGTGATTTATTTTGCAAATAACAAATTAGTTAAACGATGAGA
65 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
* *
189906436 TTTAAAAAAATGGAAAAAAAATTAAATGAGAATATATAATTGGAGGGGTGCAACACGAGGACTTC
130 TATAAAAAAATGG-AAAAAAATTAAATGAG-ATATAAAATTGGAGGGGTGCAACACGAGGACTTC
* * * * *
189906501 CCAGGAGGTCAGCTATCCTAGTACTACTCTCGCCCAAGGATGCTTAACTGTGGAGTTCTGATGGG
193 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
* *
189906566 ATCTGGTGCATTAGTCCAGGTATGATCGCACCCGTCAA
258 ATC-CGTGCATTAGTCCTGGTATGATCGCACCCGTCAA
* * * * * ***
189906604 CTCTTGCACATTTTATTTATATAAA-GATGACCCCTTATTTTACTTGAGCCTCGAATTTGAATTT
1 TTCTTGCGCATTCTATTTATATAAAGGCT-ACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT
*
189906668 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGACGAGA
65 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
* ** * *
189906733 TATAAAAAAAAGGAAAAAAATTAAATGAGATACGAAATAGGAGGGGTGCAACACGAGGACTTCTC
130 TATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCC
** *
189906798 ACCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
195 AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
189906863 CCG
260 CCG
189906866 ATTCTTGCAC
Statistics
Matches: 1535, Mismatches: 186, Indels: 30
0.88 0.11 0.02
Matches are distributed among these distances:
292 111 0.07
293 4 0.00
294 424 0.28
295 719 0.47
296 173 0.11
297 104 0.07
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (294 bp):
TTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
ATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCA
GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
CGTGCATTAGTCCTGGTATGATCGCACCCGTCAA
Found at i:189906299 original size:588 final size:589
Alignment explanation
Indices: 189904836--189912928 Score: 7618
Period size: 588 Copynumber: 13.9 Consensus size: 589
189904826 TGGGATTCGG
* *
189904836 TTCTTTCGCATTCTATTTATATAAAGGCTACCCCTAATCGCACTTGAGCCTCGAATTTGAATTTA
1 TTCTTGCGCATT-TATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
* * *
189904901 CATACGACCAAATAGCGTTTCAAGTGATTTATTTCGTAAATAACTAATTAGTTAAATGATGAG--
65 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
* * * *
189904964 ATAAAAAAAATGGGAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGAACTTCCT
130 ATAAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCC
* * * * * * *
189905029 AGAAGGTCACCCACCCTAGCACTACTCTCAACCAAGCACGATTAATTGCGGAGTTCTAATGGGAT
195 AGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
* * * *
189905094 CC-GATGCATTAGTGCTGGTGTGATCGCACCAGTCAATTCTTGCGCAATCTATTTATATAAAGCC
260 CCAG-TGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAGAC
* * * *
189905158 TACCCTTGATTGAACTTGAGCCTCGAATTTGAATTTAAATATGACCAAATAGCGTTTTGAGTGAT
324 TACCC-TGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCGTTTCGAGTGAT
* * * * * * *
189905223 TTATTTCATAAATAAATAATCAGTTAAACTATGACATATAAAAAAAGGGAAAAAAATGAAATGAG
388 TTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATGGAAAAAAATTAAATGAG
* ** * * *
189905288 ATATAAAATTGCAGGGGTGCAACTTGAGGACTTCCCAAGAGGTCACCTATCCCAGTACTACTCTC
453 ATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTC
* * *
189905353 GCCCAAGCACGCTTAACTGCGGAGTTCTGACGGGATCCGTTGCATTAGTGTTGGTATGATCGCAC
518 GCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCAC
*
189905418 CTGTCAA
583 CCGTCAA
** * *
189905425 TTCTTGCTTATTCTATTTATGTAAAGGCTACCACTGATCGCACTTGAGCCTCGAATTTGAATTTA
1 TTCTTGCGCATT-TATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
* * * *
189905490 AATATGACCAAATAACGTTTCGAGTGATTTATTTTGTAAATAACTAATTAGTTAAATGATGAGAT
65 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
* * *
189905555 AT-AAAAAAATGGAAAAAAATTAAATGAAATATAAAGTTGGAGGGGTGCAACACGAGGACTTCCC
130 ATAAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCC
* * * * * * *
189905619 AGGAAGTCACCCATCCTAGTACTACTCTCGCCTAAGAACGCTTAACCGCGAAGTTTTGATGGGAT
195 AGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
* * * * * * * * **
189905684 CCGGTTCATTAATCCTGGGATGATCGCACCCGTTAATTTTTACTTATTCTATTTATATAAAGACT
260 CCAGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAGACT
* * *
189905749 ACCACTGATCTCACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCATTTCGAGCGATT
325 ACC-CTGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCGTTTCGAGTGATT
189905814 TATTTCGTAAATAACTAATTAGTTAAACGATGAGATAT-AAAAAATGGAAAAAAATTAAATGAGA
389 TATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATGGAAAAAAATTAAATGAGA
* *
189905878 TATAAAATTGGAGAGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTATTCTCG
454 TATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCG
* * * *
189905943 ACAAAGCGA-GCTTAACTGCGGAGTTCTGATGGGATCCAGCGCATTAGTGCTGGTATGATCGCAC
519 CCCAAGC-ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCAC
*
189906007 CCGTCAG
583 CCGTCAA
*
189906014 TTCTTG-GCATTTATTTATATAAAGGCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAA
1 TTCTTGCGCATTTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTAA
* *
189906078 ATACGAACAAATAGCGTTTGGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATA
66 ATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATA
189906143 TAAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCA
131 TAAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCA
* *
189906208 GGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGTGGATTTCTGATGGGATC
196 GGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
* * * *
189906273 CAGTGCATTAGTCCTGGTATGATCGCACCCGTCAAGTCTTGCGCATTCTATTTATATAAGGACAA
261 CAGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAGACTA
* *
189906338 CCCTTATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACGAAATAGCGTTTCGAGTGATTTA
326 CCCTGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCGTTTCGAGTGATTTA
* * * *
189906403 TTTTGCAAATAACAAATTAGTTAAACGATGAGATTTAAAAAAATGGAAAAAAAATTAAATGAGAA
391 TTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATGG-AAAAAAATTAAATGAG-A
* * *
189906468 TATATAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAGCTATCCTAGTACTACTCTCG
454 TATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCG
* * * * * *
189906533 CCCAAGGATGCTTAACTGTGGAGTTCTGATGGGATCTGGTGCATTAGTCCAGGTATGATCGCACC
519 CCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACC
189906598 CGTCAA
584 CGTCAA
* * * * ***
189906604 CTCTTGCACATTTTATTTATATAAA-GATGACCCCTTATTTTACTTGAGCCTCGAATTTGAATTT
1 TTCTTGCGCA-TTTATTTATATAAAGGCT-ACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT
*
189906668 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGACGAGA
64 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
** *
189906733 TATAAAAAAAA-GGAAAAAAATTAAATGAGATACGAAATAGGAGGGGTGCAACACGAGGACTTCT
129 TATAAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCC
** * *
189906797 CACCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
194 CAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
* * ** * ** * * * *
189906862 TCCGATTCTTGCACATCTA-T-TTTATATAAAGGCTACCCATGATCGCA--CTTGAGC-CTCAAA
259 TCC-A---GTG--CAT-TAGTGCTGGTATGATCGC-ACCC--G-TC-AATTCTTGCGCATTC-TA
* * * ** * * * *
189906922 TTTGAATTTAAATACGACAAAT-AACG--TTTCGAG--T-G-ATTT-ATTTCGTAAATA--A-CT
311 TTT--ATATAAAGACTAC-CCTGATCGCACTT-GAGCCTCGAATTTGAATT--TAAATACGACCA
* ** ** * ** * * *
189906976 AAT----TTT-AAACGATAAGATAT-AAAAATACGGAC-AA-AAATT-AA--ATGAGATA-CAAA
370 AATAGCGTTTCGAGTGAT-TTATTTCGTAAATA---ACTAATTAGTTAAACGATGAGATATAAAA
* **** * * * * * * **** * ** * ** *
189907029 ATA-GG--AGGGGTGCAACACGAGGACTTCTCACCAAGT-CACCCATCCTAGTACTA-CTCTCGC
431 AAATGGAAAAAAAT-TAA-ATGA-GA--TAT-A-AAATTGGAGGGGTGC-AACACGAGGACT-TC
* * * ** ** * ** * * * *
189907089 CCAAGCACGCTTAAAC-TGCGGAGTTCTGA-T-GGGATCC-AG--CGCATT-AGTGCTG-G-TAT
487 CC-AGGA-GGTCACCCAT-CCTAGTACT-ACTCTCG-CCCAAGCACGC-TTAACTGCGGAGTTCT
* * * * * ** * * *
189907145 GATCGCA-CCCGT-CAGTTCTTGGGCATTTTATTTATATAAAGGCTACCCCTGATC-G
546 GATGGGATCCGGTGCA--T-TAGTGC-TGGTA--T-GAT---CGC-A-CCC-G-TCAA
** * * ** * ** ** * ** *
189907200 CGCTTGAGCCTCGAATTTGAATTTAAA---TACGAACAAATAGCGTTTGGAG--T-G-ATTT-AT
1 TTCTTGCGCAT-TTATTT--ATATAAAGGCTAC-CCCTGATCGCACTT-GAGCCTCGAATTTGAA
* * *** * *
189907257 TTCGTAAATA--ACTAATTA--G-TT--A---AACGA--T-G-AGAT-A-TAA--A---AAA-AA
61 TT--TAAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGA
*
189907300 TG-GA-A-AAAAATTAAAT-G----AGA-T--AT-A-A-----AATAGGAGGGGTGCAACACGAG
124 TGAGATATAAAAA--AAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAG
* *
189907347 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGTGGATTTCT
187 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGGAGTTCT
* *
189907412 GATGGGATCCAGTGCATTAGTCCT-GTATGATCGCACCCGTCAAGTCTTGCGCATTCTATTTATA
252 GATGGGATCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATA
* * * * *
189907476 TAAGGACAACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAAATATGACGAAATAGCGTTTCG
317 TAAAGACTACCCTGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCGTTTCG
* * *
189907541 AGTGATTTATTTTGCAAATAACAAATTAGTTAAACGATGAGATATAAAAAAATGGAAAAAAATTA
382 AGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATGGAAAAAAATTA
* *
189907606 AATGAGA-AT-ATATATGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAGCCATCCTAGTAC
447 AATGAGATATAAAAT-TGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
* * * * * *
189907669 TACTCTCGCCCAAGGATGCTTAACTGTGGAGTTCTGATGGGATCTGGTGCATTAGTCCAGGTATG
511 TACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATG
189907734 ATCGCACCCGTCAA
576 ATCGCACCCGTCAA
* * * **
189907748 CT-TTGCACATTTTATTTATATAAA--CATGACCCCTTA-CTTTACTTGAGCCTCGAATTTGAAT
1 TTCTTGCGCA-TTTATTTATATAAAGGC-T-ACCCCTGATC-GCACTTGAGCCTCGAATTTGAAT
* *
189907809 TTAAATACGACCAAATAGCATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGACGA
62 TTAAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGA
**
189907874 GATATAAAAAAAA-GGAAAAAAATTAAATGAGATACGAAATAGGAGGGGTGCAACACGAGGACTT
127 GATATAAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTT
* ** * *
189907938 CTCACCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
192 CCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGGAGTTCTGATGG
* * ** ** * ** * * * *
189908003 GATCCGATTCTTGCTCATT-CTATTTATATAAAGGCTACCCATGATCGCA--CTTGAGC-CTCAA
257 GATCC-A---GTG--CATTAGTGCTGGTATGATCGC-ACCC--G-TC-AATTCTTGCGCATTC-T
* * * ** ** ** * *
189908064 ATTTGAATTTAAATACGA-CCAAATAACGTTTCGAG--T-G-ATTT-ATTTCGTAAATA--ACTA
310 ATTT--ATATAAAGACTACCCTGATCGCACTT-GAGCCTCGAATTTGAATT--TAAATACGACCA
* * ** * ** * * *
189908121 ATTA--GTTAAACGA-T-A-AGATAT-AAAAATACGGAC-AA-AAATT-AA--ATGAGATA-CAA
370 AATAGCGTT--TCGAGTGATTTATTTCGTAAATA---ACTAATTAGTTAAACGATGAGATATAAA
* **** * * * * * * **** * ** * ** *
189908174 AATA-GG--AGGGGTGCAACACGAGGACTTCTCACCAAGT-CACCCATCCTAGTACTA-CTCTCG
430 AAAATGGAAAAAAAT-TAA-ATGA-GA--TAT-A-AAATTGGAGGGGTGC-AACACGAGGACT-T
* * * ** ** * ** * * * *
189908234 CCCAAGCACGCTTAAAC-TGCGGAGTTCTGA-T-GGGATCC-AG--CGCATT-AGTGCTG-G-TA
486 CCC-AGGA-GGTCACCCAT-CCTAGTACT-ACTCTCG-CCCAAGCACGC-TTAACTGCGGAGTTC
* * * * * ** * * *
189908290 TGATCGCA-CCCGT-CAGTTTGGGCATTTTATTTATATAAAGGCTACCCCTGATC-G
545 TGATGGGATCCGGTGCA-TTAGTGC-TGGTA--T-GAT---CGC-A-CCC-G-TCAA
** * * ** * ** ** * ** *
189908344 CGCTTGAGCCTCAAATTTGAATTTAAA---TACGAACAAATAGCGTTTGGAG--T-G-ATTT-AT
1 TTCTTGCGCAT-TTATTT--ATATAAAGGCTAC-CCCTGATCGCACTT-GAGCCTCGAATTTGAA
* * *** *
189908401 TTCGTAAATA--ACTAATTA--G-TT--A---AACGA--T-G-AGAT-A-TAA--A---AAA--A
61 TT--TAAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGA
* *
189908443 TG-GA-A-AAAAATTAAAT-G----AGA-T--AT-A-AAA-----TAGGAGGGGTGCAACACGAG
124 TGAGATATAAAAA--AAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAG
* * *
189908490 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCAACCAAGCACGCTTAACTGTGGATTTCT
187 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGGAGTTCT
* *
189908555 GAT-GGATCCAGTGCATTAGTCCTGGTATGATCGCACCCGTCAAGTCTTGCGCATTCTATTTATA
252 GATGGGATCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATA
* * * * *
189908619 TAAGGACAACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAAATATGACGAAATAGCGTTTCG
317 TAAAGACTACCCTGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCGTTTCG
* * * *
189908684 AGTGATTTATTTTGCAAATGACAAATTAGTTAAACGATGAGATAT-AAAAAATGGAAAAAAAATT
382 AGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATGG-AAAAAAATT
* *
189908748 AAATGAGAATATATAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAGCCATCCTAGTA
446 AAATGAG-ATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTA
* * * * * *
189908813 CTACTCTCGCCCAAGGATGCTTAACTGTGGAGTTCTGATGGGATCTGGTGCATTAGTCCAGGTAT
510 CTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTAT
189908878 GATCGCACCCGTCAA
575 GATCGCACCCGTCAA
* * * **
189908893 CTCTTGCACATTTTATTTATATAAA--CATGACCCCTTA-CTTTACTTGAGCCTCGAATTTGAAT
1 TTCTTGCGCA-TTTATTTATATAAAGGC-T-ACCCCTGATC-GCACTTGAGCCTCGAATTTGAAT
* *
189908955 TTACATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGACGA
62 TTAAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGA
**
189909020 GATATAAAAAAAA-GGAAAAAAATTAAATGAGATACGAAATAGGAGGGGTGCAACACGAGGACTT
127 GATATAAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTT
* ** * *
189909084 CTCACCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAACTGCGGAGTTCTGATG
192 CCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTT-AACTGCGGAGTTCTGATG
* * * *
189909149 GGATCCAGCGCATTAGTGCTGGTATGATCGCACCCGTCAGTTCTTGGGCATTTTATTTATATAAA
256 GGATCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAA
* * * *
189909214 GGCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGAACAAATAGCGTTTGGAGT
321 GACTA-CCCTGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCGTTTCGAGT
189909279 GATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATAT-AAAAAATGGAAAAAAATTAAAT
385 GATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATGGAAAAAAATTAAAT
* * ** *
189909343 GAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCTCACCAAGTCACCCATCCTAGTACTACT
450 GAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACT
* *
189909408 CTCGCCCAAGCACGCTTAAACTGCGGAGTTCTGATGGGATCCAGCGCATTAGTGCTGGTATGATC
515 CTCGCCCAAGCACGCTT-AACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC
*
189909473 GCACCCGTCAG
579 GCACCCGTCAA
* * *
189909484 TTCTTGGGCATTTTATTTATATAAAGGCTACCCCTGATCGCGCTTGAGCCTCAAATTTGAATTTA
1 TTCTTGCGCA-TTTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
* *
189909549 AATACGACCAAATAGCATTTGGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
65 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
189909614 ATAAAAAAAATGG-AAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCC
130 ATAAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCC
* *
189909678 AGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGTGGATTTCTGATGGGAT
195 AGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
* * * * *
189909743 CCA-TGCATTAGTCCTGGTATGATCGCACCCGTCAAGTCTTGAGCATTCTATTTATATAAGGACA
260 CCAGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAGACT
* *
189909807 ACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACGAAATAGCGTTTCGAGTGATTT
325 ACCCTGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCGTTTCGAGTGATTT
* *
189909872 ATTTCGCAAATAACAAATTAGTTAAACGATGAGATATAAAAAAATGGAAAAAAAAATTAAATGAG
390 ATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATGG--AAAAAAATTAAATGAG
* * *
189909937 AATATATAATTGGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCAGCCATCCTAGTACTACTCT
453 -ATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCT
* * * * *
189910002 CGCCCAAGGACGCTTAACTGTGGAGTTCTGATGGGATCTGGTGCATTAGTCCAGGTATGATCGCA
517 CGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCA
189910067 CCCGTCAA
582 CCCGTCAA
* * * * * **
189910075 CTCTTGCGTATTTTATTTATATAAAGACGACCCCTTAT-TTACTTGAGCCTCGAATTTGAATTTA
1 TTCTTGCGCA-TTTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
*
189910139 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGACGAGAT
65 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
* * * * *
189910204 ATAAAAAAAAAGG-AAAAAATTAAATGAGATACAAAATAGGA-GGGTGCAACATGAGAACTTTCC
130 ATAAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCC
* * * * * * *
189910267 AGGAGGTCAACCATCCTAGTACTACACTCACCCAAGCACACTTAATTGCGGAGTTATAATAGGAT
195 AGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
* * *
189910332 CC-GATACATTAGTGCTGGTATGATCGGACCCGTCAATTCTTGCGCATTCTATTTATATAAAGGC
260 CCAG-TGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAGAC
* *
189910396 TAACCTGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCGTTTTGAGTGATT
324 TACCCTGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCGTTTCGAGTGATT
* * * *
189910461 TATTTTGTAAATAACTAATTAGTTAAACTATGACATATAAAAAAATAGAAAAAAATTAAATGAGA
389 TATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATGGAAAAAAATTAAATGAGA
* * * *
189910526 TATAAAATTGGAGGGGTGCAACACGAGAACTTTCCAGGAGGTCAACCATCCTAGTACTACTCTCA
454 TATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCG
* ** * * ** *
189910591 CCCAAGCACGCTTAATTGCGGAGTTCAAATAGGATCCGATGCATTAGTGCCCGTATGATCGCATC
519 CCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACC
189910656 CGTCAA
584 CGTCAA
* * *
189910662 TTCTTGCGCATTCTATTTATATAAAGG-TAACCTTGATCGCACTTGAG-CTTGAATTTGAATTTA
1 TTCTTGCGCATT-TATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
* * * * *
189910725 AATACGACCAAATAGTGTTTTGAGTGATTTATTTTCGTAAATAACTAATTAGTTAAACTAGGACA
65 AATACGACCAAATAGCGTTTCGAGTGATTTA-TTTCGTAAATAACTAATTAGTTAAACGATGAGA
* * * *
189910790 TAT-AAAAAAATAGAAAAATATTAAATGAGATATAAAATTGGAGCGGTGCAACACGAGGACTTCC
129 TATAAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCC
* * * * * * *
189910854 GAGGAGGTCACCTATCCCAGTACTATTCTCTCCCACGCACGCTTAACTGCGGAGTACTGATGGGA
194 CAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
* ** * * *
189910919 TCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCTTATCCTATTTAAATAAAGGC
259 TCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAGAC
* *
189910984 TACACTGATCGCACTTGAGCCTCGAATTTGAATTTAAATATGACCAAATAGCGTTTCGAGTGATT
324 TACCCTGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCGTTTCGAGTGATT
** *
189911049 TATTTCGTAAATAACTAATTAGTTAAATTATGAGATATAAAAAAATGG-AAAAAATTAAATGAAA
389 TATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATGGAAAAAAATTAAATGAGA
*
189911113 TATAAAATTGGAGGGGAGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCG
454 TATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCG
* * * * *
189911178 CCCAAGAACGCTTAACCGCGGAGTTCTGATGGGATCCGGTGCATTAGTCCTGGGATGATTGCACC
519 CCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACC
*
189911243 CGTTAA
584 CGTCAA
* ** * * *
189911249 TTTTTGCTTATTCTATTTATATAAAGACTACCACTAATCGCACTTGAGCCTCGAATTTGAATTTA
1 TTCTTGCGCATT-TATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
* * *
189911314 AATACGACCAAATAGAGTTTCGAGTGATTTATTTCGTAAATAATTAATTAGTTAAACAATGAGAT
65 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
* * * *
189911379 ATAAAAAAAATGGAAAAAAATTAAATGAGATATTAAATTGTAGGGGTACAACACGA-GACTTCCC
130 ATAAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCC
* *
189911443 AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGTACGCTTAACTGCGGAGTTCTGATGGGAT
195 AGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
* * * * * * *
189911508 CCAGTGCATTAGTACTGGTATGATCGCACCTGTCACTTTTTGCACATTCTTTTTATATAAAGGCT
260 CCAGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAGACT
* * * * * * *
189911573 ACCCCTTATCGCATTTGAGCCTCGAATTTGAGTTAAAATATGGCCAAATAGCGTTCCGAGTGATT
325 A-CCCTGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCGTTTCGAGTGATT
* * * *
189911638 TATATCGTAAATAACTAATTAGTTGAATGATAAGATAT--AAAAATGGAAAAAAATTAAATGAGA
389 TATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATGGAAAAAAATTAAATGAGA
* * *
189911701 TATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCA
454 TATAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCG
* * * * *
189911766 CCCAAGAATGCTTAACTGTGAAGTTCTGATGGGATCCGGTGCATTAGTACTGGTATGATCGCACC
519 CCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACC
189911831 CGTCAA
584 CGTCAA
* *
189911837 TTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTCAGCCTCGAATTTGAATTTA
1 TTCTTGCGCATT-TATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
*
189911902 AATACGACCAAATAGTGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
65 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
* * *
189911967 AT-AAAAAAATGAAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAATACGAGGACTTCTC
130 ATAAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCC
** * * * * * ** *
189912031 ACCAAGTCACCCATCCTAGTACTACTTTCCCCCAAACACGCTTCACTGTAGAGTTCTGATAGGAT
195 AGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
* * * * *
189912096 CCGGAGAATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCTTTCTATTTATATAAAGGCT
260 CCAGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAGACT
* * ** * * *
189912161 ACCCCTTATTGCTTTTGAGCCTCGAATTAGAATTTGAATGCGACCAAATAGCGTTTCGAGTGATT
325 A-CCCTGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCGTTTCGAGTGATT
* * * *
189912226 TATTTCGTAAATAACTAATTAGTTAAACGATGGGATATGAAAAAATAGAAACAAATTAAATGAGA
389 TATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATGGAAAAAAATTAAATGAGA
* * * * * * * ** *
189912291 AATATAATTGTAGGGGGCGCAACAAGAGTACTTCTCACCAAGTCACCCATCCTAGTACTACTCTC
454 TATAAAATTGGA-GGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTC
* *
189912356 GCCCAAGCACGCATAACTGCGGAGTTCTGATGGGATCCGGCGCATTAGTGCTGGTATGATCGCAC
518 GCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCAC
189912421 CCGTCAA
583 CCGTCAA
* * *
189912428 TTCTTGTGCATTCTATTTATATAAAGGCTACCCCTAATTGCACTTGAGCCTCGAATTTGAATTTA
1 TTCTTGCGCATT-TATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
** ** * * * *
189912493 AATGTGACCAAATATTGTTTCCAGTGATTTATTTCATAAAAAACTAATTAGTTAAACGATGACAT
65 AATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
* * *
189912558 AT-AAAAAAAT-GAAAAAAATTTAAATGAGATATAAAATTGGAGGGCTGCAACGCGAGGACTTCC
130 ATAAAAAAAATGGAAAAAAA-TTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCC
* *
189912621 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCC-AGCACGCTTAACCGCGGAGTTCTGATGGGA
194 CAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
*
189912685 TCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAGGC
259 TCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAGAC
* * *
189912750 TACCCCTGATCGCACTTAAGCCTCGAATTTGAATTTAAATACCACTAAATAGCGTTTCGAGTGAT
324 TA-CCCTGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCGTTTCGAGTGAT
* * *
189912815 TTATTTCGTACATAACAAATTAGTTAAATGATGAGATATAAAAAAATGGAAAAAAATTAAATGAG
388 TTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATGGAAAAAAATTAAATGAG
189912880 ATATAAAATTGGAGGGGTGCAACACGAGGACTTCCCTA-GAGGTCACCCA
453 ATATAAAATTGGAGGGGTGCAACACGAGGACTTCCC-AGGAGGTCACCCA
189912929 AAAGGTATGA
Statistics
Matches: 6094, Mismatches: 1050, Indels: 720
0.77 0.13 0.09
Matches are distributed among these distances:
545 7 0.00
546 28 0.00
547 35 0.01
548 36 0.01
549 38 0.01
550 37 0.01
551 52 0.01
552 17 0.00
553 34 0.01
554 30 0.00
555 33 0.01
556 35 0.01
557 208 0.03
558 29 0.00
559 21 0.00
560 15 0.00
561 14 0.00
562 9 0.00
563 8 0.00
564 8 0.00
565 6 0.00
566 3 0.00
567 8 0.00
569 11 0.00
570 5 0.00
571 14 0.00
572 13 0.00
573 4 0.00
574 10 0.00
575 6 0.00
576 4 0.00
577 7 0.00
578 3 0.00
579 8 0.00
580 6 0.00
581 5 0.00
582 8 0.00
583 8 0.00
584 16 0.00
585 22 0.00
586 176 0.03
587 647 0.11
588 1179 0.19
589 734 0.12
590 1052 0.17
591 878 0.14
592 338 0.06
593 27 0.00
594 25 0.00
595 35 0.01
596 43 0.01
597 47 0.01
598 14 0.00
599 19 0.00
600 5 0.00
601 13 0.00
602 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (589 bp):
TTCTTGCGCATTTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTTAA
ATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATA
TAAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCA
GGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
CAGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAGACTA
CCCTGATCGCACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAGCGTTTCGAGTGATTTA
TTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATGGAAAAAAATTAAATGAGATA
TAAAATTGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
TCAA
Found at i:189907562 original size:294 final size:292
Alignment explanation
Indices: 189906868--189908007 Score: 1591
Period size: 294 Copynumber: 3.9 Consensus size: 292
189906858 GGGATCCGAT
* *
189906868 TCTTGCACA-TCTATTTTATATAAAGGCTACCCATGATCGCACTTGAGCCTCAAATTTGAATTTA
1 TCTTGCACATTCTA-TTTATATAAAGGCAACCC-TGATCGCACTTGAGCCTCGAATTTGAATTTA
* *
189906932 AATACGACAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATT--TTAAACGATAAGATA
64 AATACGACAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATA
* * * *
189906995 TAAAAATACGGACAAAAATTAAATGAGATACAAAATAGGAGGGGTGCAACACGAGGACTTCTCAC
129 TAAAAAAATGGAAAAAAATTAAATGAGATACAAAATAGGAGGGGTGCAACACGAGGACTTCCCAC
189907060 CAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAACTGCGGAGTTCTGATGGGATC
194 CAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT-AACTGCGGAGTTCTGATGGGATC
* *
189907125 CAGCGCATTAGTGCTGGTATGATCGCACCCGTC-AG
258 CAGTGCATTAGTCCT-GTATGATCGCACCCGTCAAG
** * * *
189907160 TTCTTGGGCATTTTATTTATATAAAGGCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTA
1 -TCTTGCACATTCTATTTATATAAAGGC-AACCCTGATCGCACTTGAGCCTCGAATTTGAATTTA
*
189907225 AATACGAACAAATAGCGTTTGGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
64 AATACG-ACAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGAT
*
189907290 ATAAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCC
128 AT-AAAAAAATGGAAAAAAATTAAATGAGATACAAAATAGGAGGGGTGCAACACGAGGACTTCCC
** * * * *
189907355 AGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGTGGATTTCTGATGGGAT
192 ACCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
189907420 CCAGTGCATTAGTCCTGTATGATCGCACCCGTCAAG
257 CCAGTGCATTAGTCCTGTATGATCGCACCCGTCAAG
* *
189907456 TCTTGCGCATTCTATTTATAT-AAGGACAACCCTTATCGCACTTGAGCCTCGAATTTGAATTTAA
1 TCTTGCACATTCTATTTATATAAAGG-CAACCCTGATCGCACTTGAGCCTCGAATTTGAATTTAA
* * * *
189907520 ATATGACGAAATAGCGTTTCGAGTGATTTATTTTGCAAATAACAAATTAGTTAAACGATGAGATA
65 ATACGAC-AAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATA
* *
189907585 TAAAAAAATGGAAAAAAATTAAATGAGA-A-TATATATGGAGGGGTGCAACACGAGGACTTCCCA
129 TAAAAAAATGGAAAAAAATTAAATGAGATACAAAATA-GGAGGGGTGCAACACGAGGACTTCCCA
** * * * * *
189907648 GGAGGTCAGCCATCCTAGTACTACTCTCGCCCAAGGATGCTTAACTGTGGAGTTCTGATGGGATC
193 CCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
** * *
189907713 TGGTGCATTAGTCCAGGTATGATCGCACCCGTCAAC
258 CAGTGCATTAGTCC-TGTATGATCGCACCCGTCAAG
* * **
189907749 T-TTGCACATTTTATTTATATAAA--CATGACCCCTTA-CTTTACTTGAGCCTCGAATTTGAATT
1 TCTTGCACATTCTATTTATATAAAGGCA--A-CCCTGATC-GCACTTGAGCCTCGAATTTGAATT
* *
189907810 TAAATACGACCAAATAGCATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGACGAG
62 TAAATACGA-CAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAG
* * *
189907875 ATATAAAAAAAAGGAAAAAAATTAAATGAGATACGAAATAGGAGGGGTGCAACACGAGGACTTCT
126 ATATAAAAAAATGGAAAAAAATTAAATGAGATACAAAATAGGAGGGGTGCAACACGAGGACTTCC
189907940 CACCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
191 CACCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
189908005 TCC
256 TCC
189908008 GATTCTTGCT
Statistics
Matches: 762, Mismatches: 66, Indels: 37
0.88 0.08 0.04
Matches are distributed among these distances:
290 2 0.00
291 4 0.01
292 119 0.16
293 221 0.29
294 228 0.30
295 41 0.05
296 51 0.07
297 96 0.13
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (292 bp):
TCTTGCACATTCTATTTATATAAAGGCAACCCTGATCGCACTTGAGCCTCGAATTTGAATTTAAA
TACGACAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATA
AAAAAATGGAAAAAAATTAAATGAGATACAAAATAGGAGGGGTGCAACACGAGGACTTCCCACCA
AGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCAG
TGCATTAGTCCTGTATGATCGCACCCGTCAAG
Found at i:189908617 original size:294 final size:295
Alignment explanation
Indices: 189908009--189912928 Score: 6867
Period size: 294 Copynumber: 16.7 Consensus size: 295
189907999 ATGGGATCCG
* * *
189908009 ATTCTTGCTCATTCTATTTATATAAAGGCTACCCATGATCGCACTTGAGCCTCAAATTTGAATTT
1 ATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT
* *
189908074 AAATACGACCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATAAGA
66 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
* * * * * *
189908139 TATAAAAATACGGACAAAAATTAAATGAGATACAAAATAGGAGGGGTGCAACACGAGGACTTCTC
131 TATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCC
** *
189908204 ACCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAACTGCGGAGTTCTGATGGGA
196 AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT-AACTGCGGAGTTCTGATGGGA
*
189908269 TCCAGCGCATTAGTGCTGGTATGATCGCACCCGTC-
260 TCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* * * * *
189908304 AGT-TTGGGCATTTTATTTATATAAAGGCTACCCCTGATCGCGCTTGAGCCTCAAATTTGAATTT
1 ATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT
* *
189908368 AAATACGAACAAATAGCGTTTGGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
66 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
*
189908433 TATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCC
131 TATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCC
** * *
189908498 AGGAGGTCACCCATCCTAGTACTACTCTCAACCAAGCACGCTTAACTGTGGATTTCTGAT-GGAT
196 AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
*
189908562 CCAGTGCATTAGTCCTGGTATGATCGCACCCGTCA
261 CCAGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* * *
189908597 AGTCTTGCGCATTCTATTTATAT-AAGGAC-AACCCTTATCGCACTTGAGCCTCGAATTTGAATT
1 ATTCTTGCGCATTCTATTTATATAAAGG-CTACCCCTGATCGCACTTGAGCCTCGAATTTGAATT
* * * * * *
189908660 TAAATATGACGAAATAGCGTTTCGAGTGATTTATTTTGCAAATGACAAATTAGTTAAACGATGAG
65 TAAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAG
*
189908725 ATAT-AAAAAATGGAAAAAAAATTAAATGAGAATATATAATTGGAGGGGTGCAACACGAGGACTT
130 ATATAAAAAAATGG-AAAAAAATTAAATGAG-ATATAAAATTGGAGGGGTGCAACACGAGGACTT
* * * *
189908789 CCCAGGAGGTCAGCCATCCTAGTACTACTCTCGCCCAAGGATGCTTAACTGTGGAGTTCTGATGG
193 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
** * *
189908854 GATCTGGTGCATTAGTCCAGGTATGATCGCACCCGTCA
258 GATCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* * * * **
189908892 ACTCTTGCACATTTTATTTATATAAA--CATGACCCCTTA-CTTTACTTGAGCCTCGAATTTGAA
1 ATTCTTGCGCATTCTATTTATATAAAGGC-T-ACCCCTGATC-GCACTTGAGCCTCGAATTTGAA
* *
189908954 TTTACATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGACG
63 TTTAAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATG
* ** *
189909019 AGATATAAAAAAAAGGAAAAAAATTAAATGAGATACGAAATAGGAGGGGTGCAACACGAGGACTT
128 AGATATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTT
* ** *
189909084 CTCACCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAACTGCGGAGTTCTGATG
193 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT-AACTGCGGAGTTCTGATG
*
189909149 GGATCCAGCGCATTAGTGCTGGTATGATCGCACCCGTCA
257 GGATCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* * * *
189909188 GTTCTTGGGCATTTTATTTATATAAAGGCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTT
1 ATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT
* *
189909253 AAATACGAACAAATAGCGTTTGGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
66 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
* *
189909318 TAT-AAAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCTC
131 TATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCC
** *
189909382 ACCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAACTGCGGAGTTCTGATGGGA
196 AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT-AACTGCGGAGTTCTGATGGGA
*
189909447 TCCAGCGCATTAGTGCTGGTATGATCGCACCCGTCA
260 TCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* * * * *
189909483 GTTCTTGGGCATTTTATTTATATAAAGGCTACCCCTGATCGCGCTTGAGCCTCAAATTTGAATTT
1 ATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT
* *
189909548 AAATACGACCAAATAGCATTTGGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
66 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
*
189909613 TATAAAAAAAATGG-AAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCC
131 TAT-AAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCC
* * *
189909677 CAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGTGGATTTCTGATGGGA
195 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
*
189909742 TCCA-TGCATTAGTCCTGGTATGATCGCACCCGTCA
260 TCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* * * *
189909777 AGTCTTGAGCATTCTATTTATAT-AAGGAC-AACCCTTATCGCACTTGAGCCTCGAATTTGAATT
1 ATTCTTGCGCATTCTATTTATATAAAGG-CTACCCCTGATCGCACTTGAGCCTCGAATTTGAATT
* * *
189909840 TAAATACGACGAAATAGCGTTTCGAGTGATTTATTTCGCAAATAACAAATTAGTTAAACGATGAG
65 TAAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAG
*
189909905 ATATAAAAAAATGGAAAAAAAAATTAAATGAGAATATATAATTGGAGGGGTGCAACACGAGGACT
130 ATATAAAAAAATGG--AAAAAAATTAAATGAG-ATATAAAATTGGAGGGGTGCAACACGAGGACT
* * * *
189909970 TCCTAGGAGGTCAGCCATCCTAGTACTACTCTCGCCCAAGGACGCTTAACTGTGGAGTTCTGATG
192 TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
** * *
189910035 GGATCTGGTGCATTAGTCCAGGTATGATCGCACCCGTCA
257 GGATCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* * * * * * **
189910074 ACTCTTGCGTATTTTATTTATATAAAGACGACCCCTTAT-TTACTTGAGCCTCGAATTTGAATTT
1 ATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT
*
189910138 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGACGAGA
66 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
* * * * * *
189910203 TATAAAAAAAAAGG-AAAAAATTAAATGAGATACAAAATAGGA-GGGTGCAACATGAGAACTTTC
131 TAT-AAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCC
* * * * * * * *
189910266 CAGGAGGTCAACCATCCTAGTACTACACTCACCCAAGCACACTTAATTGCGGAGTTATAATAGGA
195 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
* *
189910331 TCC-GATACATTAGTGCTGGTATGATCGGACCCGTCA
260 TCCAG-TGCATTAGTGCTGGTATGATCGCACCCGTCA
*
189910367 ATTCTTGCGCATTCTATTTATATAAAGGCTA-ACCTGATCGCACTTGAGCCTCGAATTTGAATTT
1 ATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT
* * * *
189910431 AAATACGACCAAATAGCGTTTTGAGTGATTTATTTTGTAAATAACTAATTAGTTAAACTATGACA
66 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
* * *
189910496 TATAAAAAAATAGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGAACTTTCC
131 TATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCC
* * * ** *
189910561 AGGAGGTCAACCATCCTAGTACTACTCTCACCCAAGCACGCTTAATTGCGGAGTTCAAATAGGAT
196 AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
** *
189910626 CC-GATGCATTAGTGCCCGTATGATCGCATCCGTCA
261 CCAG-TGCATTAGTGCTGGTATGATCGCACCCGTCA
* * *
189910661 ATTCTTGCGCATTCTATTTATATAAAGG-TAACCTTGATCGCACTTGAG-CTTGAATTTGAATTT
1 ATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT
* * * * *
189910724 AAATACGACCAAATAGTGTTTTGAGTGATTTATTTTCGTAAATAACTAATTAGTTAAACTAGGAC
66 AAATACGACCAAATAGCGTTTCGAGTGATTTA-TTTCGTAAATAACTAATTAGTTAAACGATGAG
* * *
189910789 ATATAAAAAAATAGAAAAATATTAAATGAGATATAAAATTGGAGCGGTGCAACACGAGGACTTCC
130 ATATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCC
* * * * * * *
189910854 GAGGAGGTCACCTATCCCAGTACTATTCTCTCCCACGCACGCTTAACTGCGGAGTACTGATGGGA
195 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
*
189910919 TCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
260 TCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCA
** * * *
189910955 ATTCTTGCTTATCCTATTTAAATAAAGGCTA-CACTGATCGCACTTGAGCCTCGAATTTGAATTT
1 ATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT
* **
189911019 AAATATGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAATTATGAGA
66 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
* *
189911084 TATAAAAAAATGG-AAAAAATTAAATGAAATATAAAATTGGAGGGGAGCAACACGAGGACTTCCC
131 TATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCC
* *
189911148 AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGAACGCTTAACCGCGGAGTTCTGATGGGAT
196 AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
* * * * *
189911213 CCGGTGCATTAGTCCTGGGATGATTGCACCCGTTA
261 CCAGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* ** * * *
189911248 ATTTTTGCTTATTCTATTTATATAAAGACTACCACTAATCGCACTTGAGCCTCGAATTTGAATTT
1 ATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT
* * *
189911313 AAATACGACCAAATAGAGTTTCGAGTGATTTATTTCGTAAATAATTAATTAGTTAAACAATGAGA
66 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
* * *
189911378 TATAAAAAAAATGGAAAAAAATTAAATGAGATATTAAATTGTAGGGGTACAACACGA-GACTTCC
131 TAT-AAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCC
*
189911442 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGTACGCTTAACTGCGGAGTTCTGATGGGA
195 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
* *
189911507 TCCAGTGCATTAGTACTGGTATGATCGCACCTGTCA
260 TCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* * * * * * * *
189911543 CTTTTTGCACATTCTTTTTATATAAAGGCTACCCCTTATCGCATTTGAGCCTCGAATTTGAGTTA
1 ATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT
* * * * * * *
189911608 AAATATGGCCAAATAGCGTTCCGAGTGATTTATATCGTAAATAACTAATTAGTTGAATGATAAGA
66 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
*
189911673 TAT--AAAAATGGAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCC
131 TATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCC
* * * * * *
189911736 AAGAGGTCACCCATCCTAGTACTACTCTCACCCAAGAATGCTTAACTGTGAAGTTCTGATGGGAT
196 AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
* *
189911801 CCGGTGCATTAGTACTGGTATGATCGCACCCGTCA
261 CCAGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* *
189911836 ATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTCAGCCTCGAATTTGAATTT
1 ATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT
*
189911901 AAATACGACCAAATAGTGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
66 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
* * * *
189911966 TATAAAAAAATGAAAAAAAATTAAATGAGATATAAAATAGGAGGGGTGCAATACGAGGACTTCTC
131 TATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCC
** * * * * * ** *
189912031 ACCAAGTCACCCATCCTAGTACTACTTTCCCCCAAACACGCTTCACTGTAGAGTTCTGATAGGAT
196 AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
* * *
189912096 CCGGAGAATTAGTGCTGGTATGATCGCACCCGTCA
261 CCAGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* * * ** *
189912131 ATTCTTGCGCTTTCTATTTATATAAAGGCTACCCCTTATTGCTTTTGAGCCTCGAATTAGAATTT
1 ATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT
* * *
189912196 GAATGCGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGGGA
66 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
* * * * * * * * * *
189912261 TATGAAAAAATAGAAACAAATTAAATGAGAAATATAATTGTAGGGGGCGCAACAAGAGTACTTCT
131 TATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGA-GGGGTGCAACACGAGGACTTCC
** * *
189912326 CACCAAGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCATAACTGCGGAGTTCTGATGGGA
195 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
* *
189912391 TCCGGCGCATTAGTGCTGGTATGATCGCACCCGTCA
260 TCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* * *
189912427 ATTCTTGTGCATTCTATTTATATAAAGGCTACCCCTAATTGCACTTGAGCCTCGAATTTGAATTT
1 ATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT
** ** * * * *
189912492 AAATGTGACCAAATATTGTTTCCAGTGATTTATTTCATAAAAAACTAATTAGTTAAACGATGACA
66 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
* *
189912557 TATAAAAAAAT-GAAAAAAATTTAAATGAGATATAAAATTGGAGGGCTGCAACGCGAGGACTTCC
131 TATAAAAAAATGGAAAAAAA-TTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCC
*
189912621 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCC-AGCACGCTTAACCGCGGAGTTCTGATGGGA
195 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
189912685 TCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCA
260 TCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCA
*
189912721 ATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTAAGCCTCGAATTTGAATTT
1 ATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT
* * * * *
189912786 AAATACCACTAAATAGCGTTTCGAGTGATTTATTTCGTACATAACAAATTAGTTAAATGATGAGA
66 AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
189912851 TATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCC
131 TATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCC
189912916 TA-GAGGTCACCCA
196 -AGGAGGTCACCCA
189912929 AAAGGTATGA
Statistics
Matches: 4156, Mismatches: 423, Indels: 93
0.89 0.09 0.02
Matches are distributed among these distances:
292 116 0.03
293 892 0.21
294 1126 0.27
295 1097 0.26
296 748 0.18
297 156 0.04
298 21 0.01
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (295 bp):
ATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTGATCGCACTTGAGCCTCGAATTTGAATTT
AAATACGACCAAATAGCGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGA
TATAAAAAAATGGAAAAAAATTAAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTTCCC
AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
CCAGTGCATTAGTGCTGGTATGATCGCACCCGTCA
Found at i:189916476 original size:47 final size:47
Alignment explanation
Indices: 189916358--189916526 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 47
189916348 GGATGGTTGA
*
189916358 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
189916406 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
*
189916449 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
*
189916498 -C--CCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
189916527 GCTTATGGGC
Statistics
Matches: 105, Mismatches: 7, Indels: 22
0.78 0.05 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 27 0.26
45 3 0.03
46 30 0.29
47 29 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
Found at i:189916523 original size:44 final size:44
Alignment explanation
Indices: 189916360--189916534 Score: 210
Period size: 44 Copynumber: 3.9 Consensus size: 44
189916350 ATGGTTGAGC
189916360 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * *
189916404 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGA
189916453 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * *
189916497 ACCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
189916535 GCGGTTACAT
Statistics
Matches: 111, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
43 1 0.01
44 38 0.34
45 2 0.02
46 32 0.29
47 32 0.29
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:189917867 original size:29 final size:29
Alignment explanation
Indices: 189917825--189918302 Score: 845
Period size: 29 Copynumber: 16.5 Consensus size: 29
189917815 GGGGGCGTTA
189917825 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
*
189917854 CACACACAGTGCCTCGATTACTGATCTCA
1 CACACACAGTGCCTCGATTACTGATCTCG
189917883 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
189917912 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
189917941 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
189917970 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
189917999 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
189918028 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
189918057 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
189918086 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
189918115 C-CACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
189918143 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
189918172 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
*
189918201 CACACATAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
* *
189918230 CACACATAGTGCCTCGATTACTGGTCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
* * * *
189918259 CACACATAGTG-CTCGGTTAACGGAAT-TTG
1 CACACACAGTGCCTCGATT-ACTG-ATCTCG
189918288 CACACACAGTGCCTC
1 CACACACAGTGCCTC
189918303 TAATCATTCG
Statistics
Matches: 436, Mismatches: 9, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
28 34 0.08
29 398 0.91
30 4 0.01
ACGTcount: A:0.24, C:0.34, G:0.18, T:0.24
Consensus pattern (29 bp):
CACACACAGTGCCTCGATTACTGATCTCG
Found at i:189920685 original size:49 final size:49
Alignment explanation
Indices: 189920617--189920739 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
189920607 TACATATATG
*
189920617 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
189920666 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
189920715 TGTGATGAGGCCTAATGGCCAATGT
1 TGTGATGAGGCCTAATGGCCGATGT
189920740 AAAATATATG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.27, C:0.11, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
Found at i:189926576 original size:29 final size:29
Alignment explanation
Indices: 189926543--189926616 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 29
189926533 CCTTCGAGCT
* *
189926543 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCA
* **
189926572 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCA
**
189926601 CGCACACTTAGTGCCA
1 CGCACACCCAGTGCCA
189926617 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACCCAGTGCCATATATTTCCAGCA
Found at i:189931608 original size:2 final size:2
Alignment explanation
Indices: 189931601--189931661 Score: 104
Period size: 2 Copynumber: 30.5 Consensus size: 2
189931591 TACTCATGAA
* *
189931601 TC TC TC TC TC TC TA TC TC TC TC AC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
189931643 TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC T
189931662 TTATCTCTGG
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.03, C:0.48, G:0.00, T:0.49
Consensus pattern (2 bp):
TC
Found at i:189931620 original size:10 final size:10
Alignment explanation
Indices: 189931605--189931669 Score: 78
Period size: 10 Copynumber: 6.5 Consensus size: 10
189931595 CATGAATCTC
189931605 TCTCTCTCTA
1 TCTCTCTCTA
189931615 TCTCTCTC-A
1 TCTCTCTCTA
*
189931624 CTCTCTCTCTC
1 -TCTCTCTCTA
*
189931635 TCTCTCTCTC
1 TCTCTCTCTA
*
189931645 TCTCTCTCTC
1 TCTCTCTCTA
*
189931655 TCTCTCTTTA
1 TCTCTCTCTA
189931665 TCTCT
1 TCTCT
189931670 GGTTCTTTCT
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
9 1 0.02
10 49 0.98
ACGTcount: A:0.05, C:0.45, G:0.00, T:0.51
Consensus pattern (10 bp):
TCTCTCTCTA
Found at i:189934817 original size:27 final size:27
Alignment explanation
Indices: 189934787--189934841 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
189934777 GTTTCGAATG
189934787 GTTCAACGGTGAGAGTTTTAAATTTAA
1 GTTCAACGGTGAGAGTTTTAAATTTAA
189934814 GTTCAACGGTGAGAGTTTTAAATTTAA
1 GTTCAACGGTGAGAGTTTTAAATTTAA
189934841 G
1 G
189934842 CTAATGAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (27 bp):
GTTCAACGGTGAGAGTTTTAAATTTAA
Found at i:189937729 original size:23 final size:24
Alignment explanation
Indices: 189937682--189937737 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 24
189937672 TCAGCTCGGA
189937682 AGAGCTTACCATTTTCAGCTCAAT
1 AGAGCTTACCATTTTCAGCTCAAT
* * *
189937706 AGAGCTTATCGTTTT-AGCTTAAT
1 AGAGCTTACCATTTTCAGCTCAAT
189937729 AGAGCTTAC
1 AGAGCTTAC
189937738 TGTCATCAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 15 0.54
24 13 0.46
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36
Consensus pattern (24 bp):
AGAGCTTACCATTTTCAGCTCAAT
Found at i:189939808 original size:124 final size:123
Alignment explanation
Indices: 189939587--189939810 Score: 304
Period size: 124 Copynumber: 1.8 Consensus size: 123
189939577 GAATTATGTG
* * * * * * * *
189939587 AAATGAAGTATGGATGTGTATTGATTATTGATTATGTGTGTATGAGTATTTGAATGATACCCGGG
1 AAATGAAATATGAATGTCTAATGATTATTGATCATGTGTGCATGAGCAATTGAATGATACCCGGG
* * * **
189939652 CTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACAA
66 CTAAATCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACAA
*
189939710 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGAT-CATGTGTGCATGAGCAATTGAATGATACCCGG
*
189939775 GCTAAATCCCGAAGACGTTTATGCTGGAAATTATAT
65 GCTAAATCCCGAAGACGATTATGCTGGAAATTATAT
189939811 CCGGGTTAAG
Statistics
Matches: 85, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
123 28 0.33
124 57 0.67
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGAATGTCTAATGATTATTGATCATGTGTGCATGAGCAATTGAATGATACCCGGG
CTAAATCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACAA
Found at i:189939850 original size:40 final size:39
Alignment explanation
Indices: 189939805--189939934 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 39
189939795 ATGCTGGAAA
*
189939805 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* **
189939845 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
189939885 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
189939925 TTATATCCGG
1 TTATATCCGG
189939935 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:189947808 original size:40 final size:40
Alignment explanation
Indices: 189947742--189947892 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
189947732 GAATTGAATG
* * *
189947742 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
189947781 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
189947821 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
189947861 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
189947893 ACGTGGTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:189947906 original size:40 final size:40
Alignment explanation
Indices: 189947779--189947908 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
189947769 ATGCTGGAAA
* * *
189947779 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
189947819 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
189947859 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
189947899 TTATATCCGG
1 TTATATCCGG
189947909 TTATATTCCG
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 1 0.01
40 75 0.99
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:189956280 original size:29 final size:28
Alignment explanation
Indices: 189956210--189956284 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
189956200 ATACTCGATT
* *
189956210 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
189956238 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
189956267 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
189956285 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:189956301 original size:29 final size:29
Alignment explanation
Indices: 189956268--189956341 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
189956258 CCTTCGAGCT
189956268 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
189956297 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
189956326 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
189956342 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:189958753 original size:40 final size:38
Alignment explanation
Indices: 189958697--189958849 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 38
189958687 GGATATAGCG
* *
189958697 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTGTAAT
1 ACTCGCACAAAAGCCTTCGGGACATAGCCCGGTT-TAGT
* * * *
189958736 AGCTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGT
1 A-CTCGCACAAAAGCCTTCGGGACATAGCCCGG-TTTAGT
* *
189958776 AACTCGCACAAATGCCTTCGGGA-ATTGACCCGGATTTAGT
1 -ACTCGCACAAAAGCCTTCGGGACATAG-CCCGG-TTTAGT
* *
189958816 CACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 -AC-TCGCACAAAAGCCTTCGGGACATAGCCCGG
189958850 ATACCATTCG
Statistics
Matches: 92, Mismatches: 16, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
39 2 0.02
40 62 0.67
41 26 0.28
42 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (38 bp):
ACTCGCACAAAAGCCTTCGGGACATAGCCCGGTTTAGT
Found at i:189964076 original size:16 final size:16
Alignment explanation
Indices: 189964057--189964087 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
189964047 CTTCTTCACT
189964057 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
189964073 TACTTACTTACTTAA
1 TACTCACTTACTTAA
189964088 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:189964093 original size:20 final size:20
Alignment explanation
Indices: 189964054--189964093 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
189964044 AAACTTCTTC
* *
189964054 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
189964074 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
189964094 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:189964461 original size:54 final size:52
Alignment explanation
Indices: 189964336--189964469 Score: 171
Period size: 54 Copynumber: 2.5 Consensus size: 52
189964326 AACTTACCAT
* *
189964336 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGG-AGCCTTGCCTTATGAACTCACAAA
* * * *
189964389 TGCCATGCCTTGGCATGGTCTTACATGG-GCCTTTGCCTTATAGTAACTTATAAA
1 TGCCATGTCTTGACATGGTCTTACATGGAGCC-TTGCCTTAT-G-AACTCACAAA
189964443 TGCCATGTCTTGACATGGTCTTACATG
1 TGCCATGTCTTGACATGGTCTTACATG
189964470 ATTTCCTTTC
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
51 2 0.03
52 9 0.13
53 27 0.39
54 32 0.46
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (52 bp):
TGCCATGTCTTGACATGGTCTTACATGGAGCCTTGCCTTATGAACTCACAAA
Found at i:189971548 original size:19 final size:19
Alignment explanation
Indices: 189971524--189971566 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
189971514 CTCTATTCCA
189971524 TTTGATATTTAGACATATG
1 TTTGATATTTAGACATATG
189971543 TTTGATATTTAGACATATG
1 TTTGATATTTAGACATATG
189971562 TTTGA
1 TTTGA
189971567 ATACAAACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.49
Consensus pattern (19 bp):
TTTGATATTTAGACATATG
Found at i:189973654 original size:38 final size:38
Alignment explanation
Indices: 189973600--189973673 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 38
189973590 ACACATAACG
189973600 TGCATACTGGCGTACAAAACACATCTTGACGCACAAAA
1 TGCATACTGGCGTACAAAACACATCTTGACGCACAAAA
* * *** *
189973638 TGCATATTGGCTTACAAAGTGCATCTTGGCGCACAA
1 TGCATACTGGCGTACAAAACACATCTTGACGCACAA
189973674 GTGCATAATC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 30 1.00
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (38 bp):
TGCATACTGGCGTACAAAACACATCTTGACGCACAAAA
Found at i:189973677 original size:18 final size:19
Alignment explanation
Indices: 189973621--189973679 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 19
189973611 GTACAAAACA
* *
189973621 CATCTTGACGCACAAAATG
1 CATCTTGGCGCACAAAGTG
* **
189973640 CATATTGGCTTACAAAGTG
1 CATCTTGGCGCACAAAGTG
189973659 CATCTTGGCGCAC-AAGTG
1 CATCTTGGCGCACAAAGTG
189973677 CAT
1 CAT
189973680 AATCCCGTAC
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
18 8 0.25
19 24 0.75
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (19 bp):
CATCTTGGCGCACAAAGTG
Found at i:189976184 original size:71 final size:71
Alignment explanation
Indices: 189976096--189976259 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
189976086 GAGATGTATC
189976096 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
189976161 AGGACA
66 AGGACA
*
189976167 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
189976232 CGGACA
66 AGGACA
189976238 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
189976260 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:189983750 original size:41 final size:41
Alignment explanation
Indices: 189983705--189983822 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
189983695 TGAAAGATAA
189983705 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
189983746 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
189983776 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
189983817 ATGTAG
1 ATGTAG
189983823 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:189983761 original size:71 final size:71
Alignment explanation
Indices: 189983673--189983836 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
189983663 GAGATGTATC
189983673 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
189983738 AGGACA
66 AGGACA
189983744 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
189983809 AGGACA
66 AGGACA
189983815 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
189983837 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:189986636 original size:39 final size:40
Alignment explanation
Indices: 189986510--189986636 Score: 125
Period size: 40 Copynumber: 3.2 Consensus size: 40
189986500 ATGCTGGAAA
* * *
189986510 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
189986550 CTACATCC-GGCTAAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCT-AAGACCCGAAGGCATTTGTGCGAGTGG
*
189986590 TTCTATCCGGGCTAAGA-CCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
189986629 TTATATCC
1 TTATATCC
189986637 CGGTTATATT
Statistics
Matches: 67, Mismatches: 17, Indels: 7
0.74 0.19 0.08
Matches are distributed among these distances:
38 1 0.01
39 26 0.39
40 36 0.54
41 4 0.06
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:190005672 original size:43 final size:42
Alignment explanation
Indices: 190005598--190005748 Score: 144
Period size: 42 Copynumber: 3.6 Consensus size: 42
190005588 ACACCACTGT
* * * *
190005598 CATATCCCAGATATGGTCTTACA-TAGGATCTCGT-TTCGATGC
1 CATAGCCCAGATATGGTCTTACACGA-AATCTCATATT-GATGC
*
190005640 CAATAGCCCAGCTATGGTCTTACACGAAATCTCATATTGATGC
1 C-ATAGCCCAGATATGGTCTTACACGAAATCTCATATTGATGC
** * * *
190005683 CATATTCCAGATAGGGTCTTACACGAAGTCTCATAATGATGC
1 CATAGCCCAGATATGGTCTTACACGAAATCTCATATTGATGC
* * *
190005725 CATATCTCAGATATAGTCTTACAC
1 CATAGCCCAGATATGGTCTTACAC
190005749 ATAGTTTCGG
Statistics
Matches: 91, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
42 56 0.62
43 32 0.35
44 3 0.03
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (42 bp):
CATAGCCCAGATATGGTCTTACACGAAATCTCATATTGATGC
Found at i:190007562 original size:20 final size:20
Alignment explanation
Indices: 190007534--190007583 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
190007524 GGAATCATAG
* *
190007534 AAAAGTTTTCAAAAAATCTC
1 AAAATTTTTCAAAAAATCGC
*
190007554 AAAATTTTTCAAAAAATGGC
1 AAAATTTTTCAAAAAATCGC
190007574 AAAATTTTTC
1 AAAATTTTTC
190007584 TTAGGTGTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.34
Consensus pattern (20 bp):
AAAATTTTTCAAAAAATCGC
Found at i:190009074 original size:11 final size:11
Alignment explanation
Indices: 190009058--190009082 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
190009048 AATATAGGTG
190009058 ACTAAAATGTA
1 ACTAAAATGTA
190009069 ACTAAAATGTA
1 ACTAAAATGTA
190009080 ACT
1 ACT
190009083 TGAAACAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.12, G:0.08, T:0.28
Consensus pattern (11 bp):
ACTAAAATGTA
Found at i:190012494 original size:46 final size:45
Alignment explanation
Indices: 190012434--190012686 Score: 218
Period size: 46 Copynumber: 5.6 Consensus size: 45
190012424 CCTATAAGCG
*
190012434 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGT
1 AACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGT
* *** * * *
190012479 AAACTCGGACTCAACTCAACGAGTGC-CTAGTT-ACAT--TTCACG-
1 -AACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCAT-AAGT
*
190012521 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGT
1 AACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGT
* * * *
190012566 GAAATTGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCACG-
1 -AACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCAT-AAGT
*
190012614 AACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGT
1 AACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGT
*
190012659 GAACTCGGACTCAACTCAATGAGTTCGG
1 -AACTCGGACTCAACTCAACGAGTTCGG
190012687 ATGCCCAAAT
Statistics
Matches: 163, Mismatches: 26, Indels: 36
0.72 0.12 0.16
Matches are distributed among these distances:
41 24 0.15
42 6 0.04
43 8 0.05
44 9 0.06
45 6 0.04
46 74 0.45
47 25 0.15
48 1 0.01
49 4 0.02
50 3 0.02
51 3 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (45 bp):
AACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGT
Found at i:190012630 original size:93 final size:93
Alignment explanation
Indices: 190012432--190012691 Score: 399
Period size: 93 Copynumber: 2.9 Consensus size: 93
190012422 CGCCTATAAG
*
190012432 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGT-AAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAAA-TCGGACTCAACTC
*
190012496 AACGA-----G-TGCCTAGTTACATTTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
190012519 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAAATTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAAATCGGACTCAACTCA
190012584 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
190012612 CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAAATCGGACTCAACTCA
*
190012677 ATGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
190012692 CAAATATCCT
Statistics
Matches: 157, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
87 62 0.39
88 3 0.02
92 1 0.01
93 91 0.58
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAAATCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:190013332 original size:24 final size:24
Alignment explanation
Indices: 190013300--190013348 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
190013290 TTAACGAAAA
190013300 ATCACTTAGCAAAAGTTGTTTAAC
1 ATCACTTAGCAAAAGTTGTTTAAC
190013324 ATCACTTAGCAAAAGTTGTTTAAC
1 ATCACTTAGCAAAAGTTGTTTAAC
190013348 A
1 A
190013349 CAATCTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (24 bp):
ATCACTTAGCAAAAGTTGTTTAAC
Found at i:190015385 original size:40 final size:40
Alignment explanation
Indices: 190015340--190015507 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
190015330 CGGAATATAA
190015340 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
190015380 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
190015420 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
190015460 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
190015500 CCGGATAT
1 CCGGATAT
190015508 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:190023931 original size:27 final size:28
Alignment explanation
Indices: 190023874--190023943 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
190023864 AAACTTGTAC
*
190023874 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
190023902 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
190023929 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
190023944 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:190023954 original size:27 final size:27
Alignment explanation
Indices: 190023874--190023955 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
190023864 AAACTTGTAC
* * *
190023874 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
190023902 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
190023929 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
190023956 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:190029295 original size:40 final size:39
Alignment explanation
Indices: 190029250--190029457 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
190029240 CGGAATACAA
*
190029250 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
190029290 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
190029330 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
190029370 CCGGATGTAGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
190029410 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
190029450 CCGGATAT
1 CCGGATAT
190029458 CATTCAATTG
Statistics
Matches: 143, Mismatches: 22, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
39 4 0.03
40 136 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:190029390 original size:80 final size:81
Alignment explanation
Indices: 190029250--190029455 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 81
190029240 CGGAATACAA
* * *
190029250 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCAC-AAT
*
190029314 -GCCTTCGGGTATTAGC
65 GGCCTTCGGGTATTAAC
* *
190029330 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAT
*
190029393 GGCCTTCGGGTCTTAAC
65 GGCCTTCGGGTATTAAC
** * ** * *
190029410 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
190029456 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
79 3 0.03
80 101 0.94
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAATG
GCCTTCGGGTATTAAC
Found at i:190037298 original size:40 final size:39
Alignment explanation
Indices: 190037253--190037460 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
190037243 CGGAATACAA
*
190037253 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
190037293 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
190037333 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
190037373 CCGGATGTAGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
190037413 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
190037453 CCGGATAT
1 CCGGATAT
190037461 CATTCAATTG
Statistics
Matches: 143, Mismatches: 22, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
39 4 0.03
40 136 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:190037393 original size:80 final size:81
Alignment explanation
Indices: 190037253--190037458 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 81
190037243 CGGAATACAA
* * *
190037253 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCAC-AAT
*
190037317 -GCCTTCGGGTATTAGC
65 GGCCTTCGGGTATTAAC
* *
190037333 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAT
*
190037396 GGCCTTCGGGTCTTAAC
65 GGCCTTCGGGTATTAAC
** * ** * *
190037413 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
190037459 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
79 3 0.03
80 101 0.94
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAATG
GCCTTCGGGTATTAAC
Found at i:190045292 original size:40 final size:39
Alignment explanation
Indices: 190045247--190045453 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
190045237 CGGAATACAA
*
190045247 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
190045287 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
190045327 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
190045367 CCGGATGTAGTCACTAGCAC-AATGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
190045406 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
190045446 CCGGATAT
1 CCGGATAT
190045454 CATTCAATTG
Statistics
Matches: 143, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 35 0.24
40 108 0.76
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:190045387 original size:80 final size:80
Alignment explanation
Indices: 190045247--190045451 Score: 245
Period size: 79 Copynumber: 2.6 Consensus size: 80
190045237 CGGAATACAA
* * *
190045247 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCAC-AAT
*
190045311 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* *
190045327 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAT
*
190045390 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
190045406 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
190045452 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 55 0.51
80 49 0.45
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAATG
CCTTCGGGTATTAAC
Found at i:190053278 original size:40 final size:39
Alignment explanation
Indices: 190053233--190053439 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
190053223 CGGAATACAA
*
190053233 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
190053273 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
190053313 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
190053353 CCGGATGTAGTCACTAGCAC-AATGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
190053392 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
190053432 CCGGATAT
1 CCGGATAT
190053440 CATTCAATTG
Statistics
Matches: 143, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 35 0.24
40 108 0.76
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Done.