Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 607 of 770
Found at i:190053373 original size:80 final size:80
Alignment explanation
Indices: 190053233--190053437 Score: 245
Period size: 79 Copynumber: 2.6 Consensus size: 80
190053223 CGGAATACAA
* * *
190053233 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCAC-AAT
*
190053297 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* *
190053313 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAT
*
190053376 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
190053392 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
190053438 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 55 0.51
80 49 0.45
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAATG
CCTTCGGGTATTAAC
Found at i:190062981 original size:93 final size:93
Alignment explanation
Indices: 190062874--190063044 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
190062864 GCCCCTAAGT
* *
190062874 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
190062939 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
190062967 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
190063032 CGAGTTCGGATGC
66 CGAGTTCGGATGC
190063045 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:190063041 original size:46 final size:46
Alignment explanation
Indices: 190062869--190063041 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
190062859 AACCCGCCCC
* * *
190062869 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
190062915 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
190062963 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
190063008 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
190063042 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:190084121 original size:68 final size:66
Alignment explanation
Indices: 190084049--190084220 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
190084039 CATCATGTGT
* * * *
190084049 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
190084112 TGTAG
62 TGTAG
** * *
190084117 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
190084182 AG
65 AG
* * * *
190084184 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
190084221 GGTCGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:190087228 original size:40 final size:40
Alignment explanation
Indices: 190087143--190087293 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
190087133 AATTGAATGA
* * *
190087143 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
190087183 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
190087224 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
190087263 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
190087294 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:190087307 original size:40 final size:40
Alignment explanation
Indices: 190087180--190087309 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
190087170 ATGCTGGAAA
* * * *
190087180 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
190087220 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
190087260 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
190087300 TTATATCCGG
1 TTATATCCGG
190087310 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:190096193 original size:25 final size:25
Alignment explanation
Indices: 190096165--190096212 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
190096155 CCTTATAATG
* * *
190096165 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
190096190 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
190096213 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:190096281 original size:20 final size:20
Alignment explanation
Indices: 190096256--190096314 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
190096246 TAAATATGGT
190096256 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
190096276 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
190096296 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
190096315 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:190096296 original size:11 final size:11
Alignment explanation
Indices: 190096260--190096314 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
190096250 TATGGTATGT
190096260 ATGATATGCAC
1 ATGATATGCAC
* *
190096271 ATGAAATG--T
1 ATGATATGCAC
190096280 ATGATATGCAC
1 ATGATATGCAC
*
190096291 ATGATATG--T
1 ATGATATGCAC
190096300 ATGATATGCAC
1 ATGATATGCAC
190096311 ATGA
1 ATGA
190096315 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:190096419 original size:23 final size:23
Alignment explanation
Indices: 190096365--190096507 Score: 207
Period size: 24 Copynumber: 6.0 Consensus size: 23
190096355 GAGGAAGTGA
190096365 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
190096388 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
190096412 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
190096435 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
190096459 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
190096483 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
190096507 A
1 A
190096508 TGATAAAGCA
Statistics
Matches: 111, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
23 45 0.41
24 56 0.50
25 10 0.09
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:190096434 original size:47 final size:46
Alignment explanation
Indices: 190096365--190096507 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 46
190096355 GAGGAAGTGA
190096365 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTAT
190096412 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTA-T
* * *
190096459 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
190096507 A
1 A
190096508 TGATAAAGCA
Statistics
Matches: 88, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
46 22 0.25
47 44 0.50
48 12 0.14
49 10 0.11
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
Found at i:190096733 original size:31 final size:31
Alignment explanation
Indices: 190096698--190096761 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
190096688 CGTTTACAGT
190096698 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
190096729 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
190096760 AA
1 AA
190096762 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:190104294 original size:25 final size:25
Alignment explanation
Indices: 190104266--190104313 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
190104256 CCTTATAATG
* * *
190104266 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
190104291 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
190104314 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:190104394 original size:11 final size:11
Alignment explanation
Indices: 190104361--190104414 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
190104351 TATGGTATGT
190104361 ATGATATGCAC
1 ATGATATGCAC
*
190104372 ATGA-ATG--T
1 ATGATATGCAC
190104380 ATGATATGCAC
1 ATGATATGCAC
*
190104391 ATGATATG--T
1 ATGATATGCAC
190104400 ATGATATGCAC
1 ATGATATGCAC
190104411 ATGA
1 ATGA
190104415 GGTAATCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 4 0.12
9 11 0.32
10 3 0.09
11 16 0.47
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:190104401 original size:20 final size:20
Alignment explanation
Indices: 190104356--190104414 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
190104346 ATAAATATGG
190104356 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
190104376 -ATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
190104395 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
190104415 GGTAATCATA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:190104519 original size:23 final size:23
Alignment explanation
Indices: 190104465--190104606 Score: 198
Period size: 23 Copynumber: 6.0 Consensus size: 23
190104455 GAGGAAGTGA
190104465 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
190104488 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
190104512 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
190104535 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
190104558 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
190104582 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
190104606 A
1 A
190104607 TGATAAAGCA
Statistics
Matches: 109, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
22 8 0.07
23 48 0.44
24 43 0.39
25 10 0.09
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:190104831 original size:31 final size:31
Alignment explanation
Indices: 190104796--190104859 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
190104786 CGTTTACAGT
190104796 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
190104827 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
190104858 AA
1 AA
190104860 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:190105791 original size:12 final size:13
Alignment explanation
Indices: 190105774--190105804 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
190105764 CCGTGCGTTC
190105774 TTTCTTC-TTTCT
1 TTTCTTCTTTTCT
190105786 TTTCTTCTTTTCT
1 TTTCTTCTTTTCT
190105799 TTTCTT
1 TTTCTT
190105805 TAATTTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTCTTCTTTTCT
Found at i:190108882 original size:25 final size:26
Alignment explanation
Indices: 190108842--190108894 Score: 99
Period size: 25 Copynumber: 2.1 Consensus size: 26
190108832 CATCACAATT
190108842 CTTATCAAAATTTTAATACGACCTTA
1 CTTATCAAAATTTTAATACGACCTTA
190108868 CTTATC-AAATTTTAATACGACCTTA
1 CTTATCAAAATTTTAATACGACCTTA
190108893 CT
1 CT
190108895 AACATCCCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.78
26 6 0.22
ACGTcount: A:0.36, C:0.21, G:0.04, T:0.40
Consensus pattern (26 bp):
CTTATCAAAATTTTAATACGACCTTA
Found at i:190110877 original size:40 final size:39
Alignment explanation
Indices: 190110712--190110895 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
190110702 AAATTGAATG
* * *
190110712 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
190110752 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
190110792 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
190110832 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
190110871 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
190110896 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:190110920 original size:80 final size:81
Alignment explanation
Indices: 190110752--190110940 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
190110742 GCTGGAAATT
* * * *
190110752 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
190110817 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
190110833 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
190110896 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
190110912 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
190110941 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:190118993 original size:40 final size:39
Alignment explanation
Indices: 190118828--190119011 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
190118818 AAATTGAATG
* * *
190118828 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
190118868 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
190118908 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
190118948 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
190118987 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
190119012 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:190119036 original size:80 final size:81
Alignment explanation
Indices: 190118868--190119056 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
190118858 GCTGGAAATT
* * * *
190118868 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
190118933 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
190118949 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
190119012 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
190119028 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
190119057 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:190127105 original size:40 final size:39
Alignment explanation
Indices: 190126940--190127123 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
190126930 AAATTGAATG
* * *
190126940 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
190126980 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
190127020 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
190127060 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
190127099 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
190127124 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:190127148 original size:80 final size:81
Alignment explanation
Indices: 190126980--190127168 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
190126970 GCTGGAAATT
* * * *
190126980 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
190127045 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
190127061 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
190127124 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
190127140 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
190127169 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:190131347 original size:27 final size:27
Alignment explanation
Indices: 190131318--190131894 Score: 728
Period size: 27 Copynumber: 21.6 Consensus size: 27
190131308 GGGTATTTTA
* *
190131318 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
190131345 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
190131372 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
190131399 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
190131426 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
190131453 ATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
190131480 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* *
190131507 GTAATTC-ATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
190131533 GTAATT-TGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
190131559 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
190131586 GTAATTTTACAAATCGA--GTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
190131611 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
190131638 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
190131665 ATAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
**
190131692 GTAA-TCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
190131718 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
190131745 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
190131772 GTAATT-T-TACAATCGAGGGTAAAACG
1 GTAATTCTGTA-AATCGAGGGTAAAACG
*
190131798 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* ** *
190131825 GTAATTTTACAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
190131852 GTAATTCTATAAA-CTGAGGGTAAAATG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
190131879 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
190131895 GGAGTACTTT
Statistics
Matches: 484, Mismatches: 48, Indels: 36
0.85 0.08 0.06
Matches are distributed among these distances:
25 25 0.05
26 89 0.18
27 365 0.75
28 5 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:190131603 original size:80 final size:81
Alignment explanation
Indices: 190131318--190131894 Score: 701
Period size: 80 Copynumber: 7.2 Consensus size: 81
190131308 GGGTATTTTA
* * * * * *
190131318 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATA
190131383 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * * * *
190131399 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATA
*
190131464 AATCGGGGGTAAAATG
66 AATCGAGGGTAAAATG
* * * * *
190131480 GTAATTATGTAAAT-TAGGGGTAAAACGGTAA-TTCATAAATCGAGGGTAAAATGGTAATT-TGT
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTAT
*
190131542 AAA-CTGAGGGTAAAACG
65 AAATC-GAGGGTAAAATG
* *
190131559 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTACAAATCGA--GTAAAACGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATA
**
190131622 AATCGAGGGTAAAACA
66 AATCGAGGGTAAAATG
* ** * * *
190131638 GTAATTCTGTAAATCAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAACGGTAA-TCTGT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATC-GAGGGTAAAACGGTAATTCTAT
*
190131701 AAATCGAGGGTAAAATA
65 AAATCGAGGGTAAAATG
* *
190131718 GTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATT-T-T
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTAT
*
190131780 ACAATCGAGGGTAAAACG
65 A-AATCGAGGGTAAAATG
* * *
190131798 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATA
190131863 AA-CTGAGGGTAAAATG
66 AATC-GAGGGTAAAATG
190131879 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
190131895 GGAGTACTTT
Statistics
Matches: 433, Mismatches: 46, Indels: 34
0.84 0.09 0.07
Matches are distributed among these distances:
78 15 0.03
79 96 0.22
80 176 0.41
81 144 0.33
82 2 0.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATA
AATCGAGGGTAAAATG
Found at i:190135037 original size:24 final size:24
Alignment explanation
Indices: 190134986--190135174 Score: 296
Period size: 24 Copynumber: 8.0 Consensus size: 24
190134976 GCTTTATCAT
*
190134986 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
190135011 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
190135035 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
190135058 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
190135081 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
190135105 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
190135129 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
190135152 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
190135175 GCACTTCCTC
Statistics
Matches: 156, Mismatches: 5, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
23 68 0.44
24 76 0.49
25 12 0.08
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:190135061 original size:23 final size:23
Alignment explanation
Indices: 190135007--190135173 Score: 280
Period size: 23 Copynumber: 7.1 Consensus size: 23
190134997 CCTAGCCTCT
*
190135007 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
190135030 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
190135054 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
190135077 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
190135100 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
190135124 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
190135148 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
190135171 TTT
1 TTT
190135174 TGCACTTCCT
Statistics
Matches: 139, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
23 71 0.51
24 68 0.49
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:190135175 original size:47 final size:47
Alignment explanation
Indices: 190135007--190135174 Score: 293
Period size: 47 Copynumber: 3.6 Consensus size: 47
190134997 CCTAGCCTCT
*
190135007 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
190135054 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
190135100 TTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
190135148 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
190135175 GCACTTCCTC
Statistics
Matches: 115, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
46 23 0.20
47 70 0.61
48 22 0.19
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:190135244 original size:9 final size:9
Alignment explanation
Indices: 190135230--190135286 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
190135220 ATCTCATGTG
190135230 CATATCATA
1 CATATCATA
*
190135239 CATATCATGTG
1 CATATCA--TA
190135250 CATATCATA
1 CATATCATA
* *
190135259 CATGTCATGTG
1 CATATCA--TA
190135270 CATATCATA
1 CATATCATA
190135279 CATATCAT
1 CATATCAT
190135287 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:190135246 original size:20 final size:20
Alignment explanation
Indices: 190135218--190135288 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
190135208 GCATTTATGA
*
190135218 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
190135238 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
190135258 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
190135278 ACATATCATGT
1 ACATATCATGT
190135289 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:190135253 original size:11 final size:11
Alignment explanation
Indices: 190135223--190135277 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
190135213 TATGAACATC
190135223 TCATGTGCATA
1 TCATGTGCATA
*
190135234 TCA--TACATA
1 TCATGTGCATA
190135243 TCATGTGCATA
1 TCATGTGCATA
* *
190135254 TCA--TACATG
1 TCATGTGCATA
190135263 TCATGTGCATA
1 TCATGTGCATA
190135274 TCAT
1 TCAT
190135278 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:190136620 original size:27 final size:27
Alignment explanation
Indices: 190136600--190137179 Score: 674
Period size: 27 Copynumber: 21.6 Consensus size: 27
190136590 AGGGTATTTT
*
190136600 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
190136627 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
190136654 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
190136681 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
190136708 GGTAATTCTGTAAATCAAGGGT-AAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
190136734 -GATAATTATGTAAATCG-GGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * * *
190136760 GGTAATTATGTAAGT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
190136787 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
190136814 AGTAATT-TGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
190136840 GGTAATTCTGTAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
190136867 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
190136894 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
190136921 AGTAATT-TGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
190136947 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
190136974 GGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
190137001 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
190137028 GGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
190137055 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
190137082 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
190137109 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
190137136 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
190137163 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
190137180 GGAGTACTTT
Statistics
Matches: 482, Mismatches: 57, Indels: 28
0.85 0.10 0.05
Matches are distributed among these distances:
25 6 0.01
26 77 0.16
27 396 0.82
28 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:190137196 original size:54 final size:54
Alignment explanation
Indices: 190136601--190137179 Score: 751
Period size: 54 Copynumber: 10.8 Consensus size: 54
190136591 GGGTATTTTA
* * * *
190136601 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* *
190136655 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * * *
190136709 GTAATTCTGTAAATCAAGGGT-AAACGATAATTATGTAAATCG-GGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * * * **
190136761 GTAATTATGTAAGT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
*
190136815 GTAATT-TGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* ** * **
190136868 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* *
190136922 GTAATT-TGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
***
190136975 GTAATTCTGTAAATCGAGGGTAAAATAATAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACG
**
190137029 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACG
* **
190137083 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* *
190137137 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCG
190137180 GGAGTACTTT
Statistics
Matches: 463, Mismatches: 52, Indels: 20
0.87 0.10 0.04
Matches are distributed among these distances:
51 1 0.00
52 25 0.05
53 129 0.28
54 306 0.66
55 2 0.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:190137202 original size:81 final size:81
Alignment explanation
Indices: 190136601--190137179 Score: 787
Period size: 81 Copynumber: 7.2 Consensus size: 81
190136591 GGGTATTTTA
* * * * * *
190136601 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
190136666 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * * *
190136682 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGT-AAACGATAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
190136746 AATCG-GGGTAAAATG
66 AATCGAGGGTAAAATG
* * * **
190136761 GTAATTATGTAAGT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATT-TGT
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
*
190136824 AAA-CTGAGGGTAAAACG
65 AAATC-GAGGGTAAAATG
* * * *
190136841 GTAATTCTGTAAATTGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
*
190136906 AATCGAGGGTAAAATA
66 AATCGAGGGTAAAATG
*
190136922 GTAATT-TGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
*
190136986 AATCGAGGGTAAAATA
66 AATCGAGGGTAAAATG
* * **
190137002 ATAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGT
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
*
190137066 AAA-CTGAGGGTAAAACG
65 AAATC-GAGGGTAAAATG
* * *
190137083 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
190137148 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
190137164 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
190137180 GGAGTACTTT
Statistics
Matches: 441, Mismatches: 45, Indels: 24
0.86 0.09 0.05
Matches are distributed among these distances:
78 2 0.00
79 58 0.13
80 161 0.37
81 217 0.49
82 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
AATCGAGGGTAAAATG
Found at i:190140506 original size:93 final size:93
Alignment explanation
Indices: 190140394--190140564 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
190140384 GCCCATAAGT
* *
190140394 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
190140459 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
190140487 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
190140552 CGAGTTCGGATGC
66 CGAGTTCGGATGC
190140565 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:190140561 original size:46 final size:46
Alignment explanation
Indices: 190140386--190140561 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
190140376 TGTAACCCGC
* * *
190140386 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
190140432 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
190140482 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
190140525 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
190140562 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:190142977 original size:29 final size:29
Alignment explanation
Indices: 190142938--190143025 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
190142928 CAAAGATAAC
*
190142938 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
190142967 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
190142996 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
190143026 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:190142996 original size:15 final size:15
Alignment explanation
Indices: 190142938--190143016 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
190142928 CAAAGATAAC
*
190142938 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
190142952 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
190142967 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
190142981 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
190142996 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
190143011 AAGAAA
1 AAGAAA
190143017 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:190143025 original size:15 final size:15
Alignment explanation
Indices: 190142949--190143025 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
190142939 AGAAAACCGA
190142949 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
190142964 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
190142978 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
190142992 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
190143008 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
190143023 ATA
1 ATA
190143026 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:190146011 original size:46 final size:46
Alignment explanation
Indices: 190145944--190146117 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
190145934 TGTAACCCGC
*
190145944 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
190145990 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
190146040 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
190146082 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
190146118 ATGCTCAACC
Statistics
Matches: 110, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 1 0.01
44 3 0.03
45 28 0.25
46 35 0.32
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:190146110 original size:92 final size:93
Alignment explanation
Indices: 190145952--190146121 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
190145942 GCCCATAAGT
* *
190145952 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
190146017 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
190146045 GAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
190146109 CGAGTTCGGATGC
66 CGAGTTCGGATGC
190146122 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 46 0.62
93 28 0.38
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:190148413 original size:541 final size:541
Alignment explanation
Indices: 190147391--190149519 Score: 3625
Period size: 541 Copynumber: 3.9 Consensus size: 541
190147381 GGATATTACA
190147391 TAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTAT
1 TAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTAT
190147456 GGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGACTAACTTGTGAA
66 GGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGACTAACTTGTGAA
*
190147521 AGTTGTAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGT
131 AGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGT
* *
190147586 GGTTTGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTACAAGCCTAGGGGTAAAAG
196 GGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTACAAGCCTAGGGATAAAAG
* * *
190147651 TGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTCTGCCATAGTATGATAAATTTTAGTAA
261 TGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGATAAAATTTAGTAA
* * *
190147716 TTAAATGTTTAAATAAACAAAATAAAAGCCTAATTTTTGTCATCTTCAACCCCTCGGCCGAAAGT
326 TTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATT
* **
190147781 TTGAAGACCACCATGGCTAGGGTTTTATTTAAGCTTTCCAAGCTCCATAGTAAGTTTGTTCTTGC
391 TTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGC
* * * *
190147846 CCCGTTTTTAATGATATTAACGTTTTTGAAATCCTTGTAGCATGATCTACCTATTTCTACCATTT
456 CCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTCTAACATGATCTACCTATTTCTACCATTT
*
190147911 ATTTGAGTTATGATGACGGTC
521 ATTTGAGTTATGATGAAGGTC
190147932 TAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTAT
1 TAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTAT
*
190147997 GGTTAGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGACTAACTTGTGAA
66 GGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGACTAACTTGTGAA
*
190148062 AGTTGTAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGT
131 AGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGT
190148127 GGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTACAAGCCTAGGGATAAAAG
196 GGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTACAAGCCTAGGGATAAAAG
* * *
190148192 TGTAAATATAATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTGTGATAAAATTTAGCAA
261 TGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGATAAAATTTAGTAA
* *
190148257 TTAAATGTTTAAATAAACAAAATAAAGGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATT
326 TTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATT
* * *
190148322 TTGAAGACCACCATTGCTAGGGTTTTGTTTAAGTTTTCTAAGCTCCATAGTAAGTCCGTTCTTGC
391 TTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGC
* *
190148387 TCTGTTTTTAATGATTTTCACGTTTTTGAAATCCTTCTAACATGATCTACCTATTTCTACCATTT
456 CCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTCTAACATGATCTACCTATTTCTACCATTT
190148452 ATTTGAGTTATGATGAAGGTC
521 ATTTGAGTTATGATGAAGGTC
*
190148473 TAGGGTTTGAACTATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTAT
1 TAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTAT
190148538 GGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGACTAACTTGTGAA
66 GGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGACTAACTTGTGAA
*
190148603 AGTTATAAAATTTTTCATAAAGGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGT
131 AGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGT
*
190148668 GGTTTC-GCTAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTGTACAAGCCTAGGGATAAAA
196 GG-TTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTACAAGCCTAGGGATAAAA
*
190148732 GTGTAAATATGATAAAATTTAGGGGTAAAAATGTAATTTTTGACATAGTATGATAAAATTTAGTA
260 GTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGATAAAATTTAGTA
190148797 ATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAAT
325 ATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAAT
190148862 TTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTG
390 TTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTG
* * * * *
190148927 CTCTGGTTTTAATGATTTTCACGTTTTTGAAATCCTTCTAACATGATCGACCTAATTCTACCATT
455 CCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTCTAACATGATCTACCTATTTCTACCATT
*
190148992 TATTTGAGTTGTGATGAAGGTC
520 TATTTGAGTTATGATGAAGGTC
* * * *
190149014 TAGAGTTTGAACTATGTTATAAATTTGTGCATTTTGATGTTTTATGGTAGATTATGCATGTTTAT
1 TAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTAT
* * * * *
190149079 GGCTCGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAA
66 GGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGACTAACTTGTGAA
* * * * **
190149144 AATTATCAAATTTGTCATTAAAGAATGATTTAGTGGAAATTGTGGG-TTTTATAGTTATGAAAGT
131 AGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGT
* * *
190149208 GGTTCTGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTGCAAGCCTAGGGGTAAAA
196 GGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATG-AAATTATTTTACAAGCCTAGGGATAAAA
* *
190149273 GTCTAAATATGATAAAATTTAGGGGTAAAAATGTAATTTTT-ACCATAGTATGATAAAATTTAGT
260 GTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGA-CATAGTATGATAAAATTTAGT
* * * *
190149337 AGTTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCACCTTCAACCCCTTGGCAGAAA
324 AATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAA
*
190149402 TTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTTCAAGCTCCATAGTAAGTCCGTTCTT
389 TTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTT
*
190149467 GCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACC
454 GCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTCTAACATGATCTACC
190149520 GTTTTTAATG
Statistics
Matches: 1510, Mismatches: 74, Indels: 8
0.95 0.05 0.01
Matches are distributed among these distances:
539 3 0.00
540 51 0.03
541 1453 0.96
542 3 0.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (541 bp):
TAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTAT
GGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGACTAACTTGTGAA
AGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGT
GGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTACAAGCCTAGGGATAAAAG
TGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGATAAAATTTAGTAA
TTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATT
TTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGC
CCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTCTAACATGATCTACCTATTTCTACCATTT
ATTTGAGTTATGATGAAGGTC
Found at i:190149934 original size:466 final size:466
Alignment explanation
Indices: 190149063--190149985 Score: 1548
Period size: 466 Copynumber: 2.0 Consensus size: 466
190149053 TTTTATGGTA
*
190149063 GATTATGCATGTTTATGGCTCGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAA
1 GATTATGCATGTTTATGGCTCGAGAAACAACTTTTGCTAAGTGATTTTCAATAAAAATGCTAAAA
* * * *
190149128 AGGACTAATTTGTAAAAATTATCAAATTTGTCATTAAAGAATGATTTAGTGGAAATTGTGGGTTT
66 AAGACTAACTTGTAAAAATTATAAAATTTGTCATAAAAGAATGATTTAGTGGAAATTGTGGGTTT
*
190149193 TATAGTTATGAAAGTGGTTCTGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTGCA
131 TATAGTTATGAAAGTGGTTCTGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACA
* *
190149258 AGCCTAGGGGTAAAAGTCTAAATATGATAAAATTTAGGGGTAAAAATGTAATTTTTACCATAGTA
196 AGCCTAGGGATAAAAGTCTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTACCATAGTA
*
190149323 TGATAAAATTTAGTAGTTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCACCTTCAA
261 TGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCACCTTCAA
*
190149388 CCCCTTGGCAGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTTCAAGCTCCATA
326 CACCTTGGCAGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTTCAAGCTCCATA
*
190149453 GTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTA
391 GTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTCTAACATGATCTA
190149518 CCGTTTTTAAT
456 CCGTTTTTAAT
* *
190149529 GATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATAAAAATGCTAAAA
1 GATTATGCATGTTTATGGCTCGAGAAACAACTTTTGCTAAGTGATTTTCAATAAAAATGCTAAAA
* * * **
190149594 AAGACTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTT
66 AAGACTAACTTGTAAAAATTATAAAATTTGTCATAAAAGAATGATTTAGTGGAAATTGTGGG-TT
190149659 TTATAGTTATGAAAGTGGTT-TCGCTAGGCTTAAGGTGAAAATAAATTGAATG-AAATTATTTTA
130 TTATAGTTATGAAAGTGGTTCT-GCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
* *
190149722 CAAGCCTAGGGATAAAAGTGTAAATATGATAAAATTTAGGGGCGAAAATGTAATTTTTGA-CATA
194 CAAGCCTAGGGATAAAAGTCTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTT-ACCATA
* *
190149786 GTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATTAAAGCCAAATTTTGGTCATCTT
258 GTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCACCTT
* *
190149851 CAACACCTTGGCCGAAATTTTGAAGACCACCATTGCTAGGGTTTTGTTTAAG-TTTTCTAAGCTC
323 CAACACCTTGGCAGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTTC-AAGCTC
* *
190149915 CATAGTAAGTCCGTTCTTGCTCTGTTTTTAATGATTTTCACGTTTTTGAAATCCTTCTAACATGA
387 CATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTCTAACATGA
190149980 TCTACC
452 TCTACC
190149986 TATTTCTACC
Statistics
Matches: 427, Mismatches: 26, Indels: 8
0.93 0.06 0.02
Matches are distributed among these distances:
465 5 0.01
466 369 0.86
467 53 0.12
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (466 bp):
GATTATGCATGTTTATGGCTCGAGAAACAACTTTTGCTAAGTGATTTTCAATAAAAATGCTAAAA
AAGACTAACTTGTAAAAATTATAAAATTTGTCATAAAAGAATGATTTAGTGGAAATTGTGGGTTT
TATAGTTATGAAAGTGGTTCTGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACA
AGCCTAGGGATAAAAGTCTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTACCATAGTA
TGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCACCTTCAA
CACCTTGGCAGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTTCAAGCTCCATA
GTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTCTAACATGATCTA
CCGTTTTTAAT
Found at i:190151553 original size:542 final size:540
Alignment explanation
Indices: 190149529--190151599 Score: 3565
Period size: 541 Copynumber: 3.8 Consensus size: 540
190149519 CGTTTTTAAT
*
190149529 GATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATAAAAATGCTAAAA
1 GATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAA
* *
190149594 AAGACTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTT
66 AAGACTAACTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTT
190149659 TTATAGTTATGAAAGTGGTTTCGCTAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTACA
131 TTATAGTTATGAAAGTGG-TTCGCTAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTACA
* *
190149724 AGCCTAGGGATAAAAGTGTAAATATGATAAAATTTAGGGGCGAAAATGTAATTTTTGACATAGTA
195 AGCCTAGGGATAAAAGTCTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTA
* *
190149789 TGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATTAAAGCCAAATTTTGGTCATCTTCAA
260 TGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCACCTTCAA
* * *
190149854 CACCTTGGCCGAAATTTTGAAGACCACCATTGCTAGGGTTTTGTTTAAG-TTTTCTAAGCTCCAT
325 CCCCTTGGCAGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTTC-AAGCTCCAT
*
190149918 AGTAAGTCCGTTCTTGCTCTGTTTTTAATGATTTTCACGTTTTTGAAATCCTTCTAACATGATCT
389 AGTAAGTCCGTTCTTGCTCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTCTAACATGATCT
190149983 ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACTATGTTATAAATTTG
454 ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACTATGTTATAAATTTG
190150048 TGTATTTTGATGTTTAATGGTA
519 TGTATTTTGATGTTTAATGGTA
190150070 GATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAA
1 GATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAA
* *
190150135 AAGACTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTT
66 AAGACTAACTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTT
*
190150200 TTATAGTTATGAAAGTGATTTCGCTAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTACA
131 TTATAGTTATGAAAGTG-GTTCGCTAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTACA
* *
190150265 AGCATAGGGATAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTA
195 AGCCTAGGGATAAAAGTCTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTA
*
190150330 TGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAA
260 TGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCACCTTCAA
* * *
190150395 CCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGAGTTTTGTTTAAGCTTTCCAAGCTCCATA
325 CCCCTTGGCAGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTTCAAGCTCCATA
* *
190150460 GTAAGTCCATTCTTGCTCTGTTTTTAATGATTTTCACGTTTTTGAAATCCTTCTAACATGATCTA
390 GTAAGTCCGTTCTTGCTCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTCTAACATGATCTA
*
190150525 CCTATTTCTACCATTTATTTGAGTTATGATGAAAGTCTAGGGTTTGAACTATGTTATAAATTTGT
455 CCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACTATGTTATAAATTTGT
* *
190150590 GCATTTTGATGTTTTATGGTA
520 GTATTTTGATGTTTAATGGTA
* * *
190150611 GATTATGCATGTTTATGGCTCGAGAAACAACTTTTGCTAAGTGATTTTTAATGAAAATGCTAAAA
1 GATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAA
* * * **
190150676 AGGACTAATTTGTAAAAGTTATCAAATTTGTCATAAAAGAATGATTTAGTGGAAATTGTGGG-TT
66 AAGACTAACTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTT
*
190150740 TTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTGC
131 TTATAGTTATGAAAGTGGTTC-GCTAGGCTTAAGGTGAAAATAAATTGAATG-AAATTATTTTAC
* *
190150805 AAGCCTAGGGGTAAAAGTCTAAATATGATAAAATTTAGGGGTAAAAATGTAATTTTT-ACCATAG
194 AAGCCTAGGGATAAAAGTCTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGA-CATAG
*
190150869 TATGATAAAATTTAGTAGTTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCACCTTC
258 TATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCACCTTC
*
190150934 AACCCCTTGGCAGAAATTTTGAAGACCACCAAGGCTAGGGTTTTGTTTAAGCTTTTCAAGCTCCA
323 AACCCCTTGGCAGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTTCAAGCTCCA
* *
190150999 TAGTAAGTCCGTTCTTGCACCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
388 TAGTAAGTCCGTTCTTGCTCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTCTAACATGATC
*
190151064 TACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACTATGTTATAAATTT
453 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACTATGTTATAAATTT
190151129 GTGTATTTTGATGTTTAATGGTA
518 GTGTATTTTGATGTTTAATGGTA
*
190151152 GATTATGCATGTTTATGGTTGGAGAAACAGCTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAA
1 GATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAA
* *
190151217 AGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTT
66 AAGACTAACTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTT
* *
190151282 TTATAGTTATGAAAGTGGTTCAGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTGC
131 TTATAGTTATGAAAGTGGTTC-GCTAGGCTTAAGGTGAAAATAAATTGAATG-AAATTATTTTAC
* *
190151347 AAGCCTAGGGGTAAAAGTCTAAATATGATAAAATTTAGGGGTAAAAATGTAATTTTT-ACCATAG
194 AAGCCTAGGGATAAAAGTCTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGA-CATAG
*
190151411 TATGATAAAATTTAGTAGTTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCACCTTC
258 TATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCACCTTC
190151476 AACCCCTTGGCAGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTTCAAGCTCCA
323 AACCCCTTGGCAGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTTCAAGCTCCA
* * *
190151541 TAGTATGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAAC
388 TAGTAAGTCCGTTCTTGCTCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTCTAAC
190151600 GCCCCAATTT
Statistics
Matches: 1469, Mismatches: 55, Indels: 11
0.96 0.04 0.01
Matches are distributed among these distances:
539 3 0.00
540 50 0.03
541 1097 0.75
542 319 0.22
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (540 bp):
GATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAA
AAGACTAACTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTT
TTATAGTTATGAAAGTGGTTCGCTAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTACAA
GCCTAGGGATAAAAGTCTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTAT
GATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCACCTTCAAC
CCCTTGGCAGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTTCAAGCTCCATAG
TAAGTCCGTTCTTGCTCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTCTAACATGATCTAC
CTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACTATGTTATAAATTTGTG
TATTTTGATGTTTAATGGTA
Found at i:190152733 original size:26 final size:26
Alignment explanation
Indices: 190152704--190152813 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
190152694 TGGTACAAAT
190152704 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
190152730 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
190152756 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
190152782 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
190152808 TGATAA
1 TGATAA
190152814 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:190154460 original size:27 final size:27
Alignment explanation
Indices: 190154419--190154531 Score: 122
Period size: 27 Copynumber: 4.2 Consensus size: 27
190154409 GAGGAAGCGT
*
190154419 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
190154446 TCTGGTGGCTCTGCCACATATATCT-A
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
190154472 TTCTGGTGGCTCTGCCACGATTATCTGTA
1 -TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
190154501 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
190154527 TCTGG
1 TCTGG
190154532 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.71
28 15 0.20
29 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:190154524 original size:54 final size:54
Alignment explanation
Indices: 190154418--190154531 Score: 158
Period size: 54 Copynumber: 2.1 Consensus size: 54
190154408 GGAGGAAGCG
*
190154418 TTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTA
1 TTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTA
* * * * *
190154472 TTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTG
1 TTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCTA
190154526 TTCTGG
1 TTCTGG
190154532 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.37
Consensus pattern (54 bp):
TTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTA
Found at i:190156687 original size:27 final size:27
Alignment explanation
Indices: 190156647--190156812 Score: 199
Period size: 27 Copynumber: 6.1 Consensus size: 27
190156637 AGGAAGCGTC
*
190156647 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
190156674 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
190156701 CTGGTGGCTCTGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
190156728 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
190156755 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTG-AT
* * * *
190156783 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
190156809 CTGG
1 CTGG
190156813 CAGCCATGCT
Statistics
Matches: 120, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
26 5 0.04
27 100 0.83
28 15 0.12
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:190156729 original size:54 final size:54
Alignment explanation
Indices: 190156647--190156812 Score: 271
Period size: 54 Copynumber: 3.1 Consensus size: 54
190156637 AGGAAGCGTC
* * *
190156647 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
190156701 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
190156755 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGTT
190156809 CTGG
1 CTGG
190156813 CAGCCATGCT
Statistics
Matches: 106, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
54 88 0.83
55 18 0.17
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:190156803 original size:81 final size:81
Alignment explanation
Indices: 190156647--190156812 Score: 246
Period size: 81 Copynumber: 2.0 Consensus size: 81
190156637 AGGAAGCGTC
*
190156647 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGACTCT
190156712 GCCACGATTATCTGAT
66 GCCACGATTATCTGAT
* * *
190156728 CTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGAT-TATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCAC-ATATATCTGT-TCTGGTGACT
* *
190156792 CTGTCAC-ATTATCTGTT
64 CTGCCACGATTATCTGAT
190156809 CTGG
1 CTGG
190156813 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
81 60 0.78
82 17 0.22
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGACTCT
GCCACGATTATCTGAT
Found at i:190159198 original size:27 final size:27
Alignment explanation
Indices: 190159163--190159351 Score: 265
Period size: 27 Copynumber: 7.0 Consensus size: 27
190159153 AGCATGGCTG
* * *
190159163 CCAGAACAGATAAT-GTGACAGAGTCA
1 CCAGATCAGATAATCGTGGCAGAGCCA
*
190159189 CTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAT-CAGATAATCGTGGCAGAGCCA
*
190159217 CCAGAACAGATATAT-GTGGCAGAGCCA
1 CCAGATCAGATA-ATCGTGGCAGAGCCA
*
190159244 TCAGATCAGATAATCGTGGCAGAGCCA
1 CCAGATCAGATAATCGTGGCAGAGCCA
190159271 CCAGATCAGATAATCGTGGCAGAGCCA
1 CCAGATCAGATAATCGTGGCAGAGCCA
190159298 CCAGATCAGATAATCGTGGCAGAGCCA
1 CCAGATCAGATAATCGTGGCAGAGCCA
* * *
190159325 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGATCAGATAATCGTGGCAGAGCCA
190159352 TCAGGACGCT
Statistics
Matches: 147, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
26 6 0.04
27 125 0.85
28 16 0.11
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (27 bp):
CCAGATCAGATAATCGTGGCAGAGCCA
Found at i:190161645 original size:40 final size:40
Alignment explanation
Indices: 190161551--190161695 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
190161541 TACTCGAATG
*
190161551 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
190161592 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
190161632 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
*
190161672 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
190161696 CTTGTGCGAG
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 63 0.68
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:190166470 original size:26 final size:26
Alignment explanation
Indices: 190166408--190166516 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
190166398 TGATACAAAT
190166408 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
190166433 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
190166459 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
190166485 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
190166511 TGATAA
1 TGATAA
190166517 GAATTCATGT
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 21 0.26
26 59 0.74
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:190168542 original size:136 final size:137
Alignment explanation
Indices: 190168297--190168582 Score: 538
Period size: 136 Copynumber: 2.1 Consensus size: 137
190168287 GAGTAGTCTC
190168297 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
190168362 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
190168427 ACTGTTA
131 ACTGTTA
*
190168434 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
190168498 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
190168563 ACTGTTA
131 ACTGTTA
**
190168570 CCTGAATGGGCTT
1 CCCAAATGGGCTT
190168583 AGGCCCAATG
Statistics
Matches: 146, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
136 126 0.86
137 20 0.14
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:190172390 original size:26 final size:26
Alignment explanation
Indices: 190172336--190172436 Score: 177
Period size: 26 Copynumber: 3.9 Consensus size: 26
190172326 GATACATTGA
*
190172336 GGTTAGGTAAATG-TTCATGATAATA
1 GGTTAGGTAAATGTTTCATGATAATG
*
190172361 GGTTAGGTAAATGTTCCATGATAATG
1 GGTTAGGTAAATGTTTCATGATAATG
190172387 GGTTAGGTAAATGTTTCATGATAATG
1 GGTTAGGTAAATGTTTCATGATAATG
190172413 GGTTAGGTAAATGTTTCATGATAA
1 GGTTAGGTAAATGTTTCATGATAA
190172437 GAATTTCATG
Statistics
Matches: 72, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 13 0.18
26 59 0.82
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.37
Consensus pattern (26 bp):
GGTTAGGTAAATGTTTCATGATAATG
Found at i:190174461 original size:135 final size:137
Alignment explanation
Indices: 190174217--190174501 Score: 538
Period size: 135 Copynumber: 2.1 Consensus size: 137
190174207 GAGTAGTCTC
190174217 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
190174282 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
190174347 ACTGTTA
131 ACTGTTA
190174354 CCCAAATGGGCTTGCATATG-TTA-TGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
190174417 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
190174482 ACTGTTA
131 ACTGTTA
**
190174489 CCTGAATGGGCTT
1 CCCAAATGGGCTT
190174502 AGGCCCAATG
Statistics
Matches: 146, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
135 123 0.84
136 3 0.02
137 20 0.14
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:190174506 original size:64 final size:64
Alignment explanation
Indices: 190174297--190174508 Score: 157
Period size: 64 Copynumber: 3.2 Consensus size: 64
190174287 TCTGAATAAG
**
190174297 GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTGTTACCCAAAT
1 GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTGTTACCTGAAT
* ** * * * * *
190174361 GGGCT--TGCATATGTTATGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCA-T---ACTGT
1 GGGCTAAGGCCCA-GTT-T-A---T---TGTAATCTGAAAAGGG-CTCTGGCCCAGTACCACTGT
*
190174420 TATCTGAAT
56 TACCTGAAT
190174429 AAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTGTTACCTGA
1 ---GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTGTTACCTGA
190174494 AT
63 AT
*
190174496 GGGCTTAGGCCCA
1 GGGCTAAGGCCCA
190174509 ATGGCTTGAG
Statistics
Matches: 108, Mismatches: 21, Indels: 38
0.65 0.13 0.23
Matches are distributed among these distances:
62 3 0.03
63 11 0.10
64 32 0.30
65 1 0.01
67 14 0.13
68 12 0.11
70 1 0.01
71 20 0.19
72 11 0.10
73 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.29
Consensus pattern (64 bp):
GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTGTTACCTGAAT
Found at i:190178301 original size:26 final size:26
Alignment explanation
Indices: 190178240--190178347 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
190178230 TGGTACAAAT
190178240 TGATAAT-GGTTAGGTAAATG-TTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
190178264 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
190178290 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
190178316 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
190178342 TGATAA
1 TGATAA
190178348 GAATTTCATG
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
24 7 0.09
25 13 0.16
26 59 0.75
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:190179854 original size:25 final size:26
Alignment explanation
Indices: 190179826--190179877 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
190179816 TTTACAGTTT
190179826 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
190179851 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
190179877 T
1 T
190179878 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:190180370 original size:136 final size:137
Alignment explanation
Indices: 190180125--190180410 Score: 538
Period size: 136 Copynumber: 2.1 Consensus size: 137
190180115 GAGTAGTCTC
190180125 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
190180190 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
190180255 ACTGTTA
131 ACTGTTA
*
190180262 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
190180326 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
190180391 ACTGTTA
131 ACTGTTA
**
190180398 CCTGAATGGGCTT
1 CCCAAATGGGCTT
190180411 AGGCCCAATA
Statistics
Matches: 146, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
136 126 0.86
137 20 0.14
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:190184189 original size:25 final size:26
Alignment explanation
Indices: 190184148--190184255 Score: 184
Period size: 25 Copynumber: 4.2 Consensus size: 26
190184138 TGATACAAAT
190184148 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
190184174 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
190184199 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
190184225 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
190184250 TGATAA
1 TGATAA
190184256 GAATTCATGT
Statistics
Matches: 80, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
25 49 0.61
26 31 0.39
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:190184203 original size:51 final size:51
Alignment explanation
Indices: 190184148--190184255 Score: 198
Period size: 51 Copynumber: 2.1 Consensus size: 51
190184138 TGATACAAAT
190184148 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
* *
190184199 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
190184250 TGATAA
1 TGATAA
190184256 GAATTCATGT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.37
Consensus pattern (51 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
Found at i:190185775 original size:25 final size:27
Alignment explanation
Indices: 190185733--190185785 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
190185723 AATTACTGTT
190185733 TACCCCTAGGTGCAAAATT-ACCGAAA
1 TACCCCTAGGTGCAAAATTGACCGAAA
** *
190185759 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGTGCAAAATTGACCGAAA
190185785 T
1 T
190185786 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.25
Consensus pattern (27 bp):
TACCCCTAGGTGCAAAATTGACCGAAA
Found at i:190186278 original size:137 final size:136
Alignment explanation
Indices: 190186033--190186318 Score: 527
Period size: 137 Copynumber: 2.1 Consensus size: 136
190186023 GAGTAGTCTC
*
190186033 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
190186098 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
190186163 CTGTTA
131 CTGTTA
190186169 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
190186234 TGTTATCTGAATAAGGGGCTAAGGCCTAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
190186299 ACTGTTA
130 ACTGTTA
**
190186306 CCTGAATGGGCTT
1 CCCAAATGGGCTT
190186319 AGGCCCAATA
Statistics
Matches: 145, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
136 20 0.14
137 125 0.86
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:190189134 original size:12 final size:12
Alignment explanation
Indices: 190189117--190189147 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
190189107 TTACTGCCAA
190189117 TCTTGAAAATCT
1 TCTTGAAAATCT
190189129 TCTTGAAAATCT
1 TCTTGAAAATCT
190189141 TCTTGAA
1 TCTTGAA
190189148 TCTCCACGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.42
Consensus pattern (12 bp):
TCTTGAAAATCT
Found at i:190191832 original size:15 final size:16
Alignment explanation
Indices: 190191812--190191844 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
190191802 GACTATCAGT
*
190191812 TTTTTCTATTAA-TCC
1 TTTTTCTAATAATTCC
190191827 TTTTTCTAATAATTCC
1 TTTTTCTAATAATTCC
190191843 TT
1 TT
190191845 GATTTGTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.21, C:0.18, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTTTCTAATAATTCC
Found at i:190193342 original size:22 final size:21
Alignment explanation
Indices: 190193312--190193413 Score: 85
Period size: 19 Copynumber: 5.2 Consensus size: 21
190193302 TATAAATTAA
*
190193312 ATCTCCAAGATTTCAAGATCAT
1 ATCTCCAAGATTGC-AGATCAT
* *
190193334 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTGCAGATCAT
*
190193355 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTGCAGATCAT
*
190193374 ATCT--AAGATTG--TATCAT
1 ATCTCCAAGATTGCAGATCAT
*
190193391 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTGCAGATCAT
190193410 ATCT
1 ATCT
190193414 AAGACTGCAT
Statistics
Matches: 75, Mismatches: 3, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
17 17 0.23
19 36 0.48
21 10 0.13
22 12 0.16
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (21 bp):
ATCTCCAAGATTGCAGATCAT
Found at i:190193364 original size:19 final size:19
Alignment explanation
Indices: 190193329--190193426 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
190193319 AGATTTCAAG
190193329 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
190193350 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
190193369 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
190193386 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
190193405 ATCATATCTAAGACTGCAT
1 ATCATATCTAAGATTGCAT
190193424 ATC
1 ATC
190193427 CTTAAAGATT
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:190193371 original size:14 final size:15
Alignment explanation
Indices: 190193351--190193407 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
190193341 AGATTGCATA
190193351 TCATATCTAAGATTG
1 TCATATCTAAGATTG
190193366 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
190193385 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
190193402 -CATATC
1 TCATATC
190193408 ATATCTAAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.16
17 17 0.45
19 15 0.39
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:190193393 original size:36 final size:37
Alignment explanation
Indices: 190193329--190193426 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
190193319 AGATTTCAAG
190193329 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
190193369 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
*
190193405 ATCATATCTAAGACTGCATATC
1 ATCATATCTAAGATTG-ATATC
190193427 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:190194378 original size:84 final size:84
Alignment explanation
Indices: 190194272--190194810 Score: 784
Period size: 84 Copynumber: 6.4 Consensus size: 84
190194262 TCTGCTATAC
* * * *
190194272 TTTAACTTGTTACCCTACTGCTTAGGGGGTTAAGGCGCA-TCTTTGATCTACTCCACTACTGCTT
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG-AGTCTTCGATCTGCTCCACTACTGCTT
* *
190194336 AGGGAGATAAGATCCGCAAT
65 AGGGAGATAAGATCTGCAAA
* *
190194356 TTTGACCTGTTACCCTATTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
190194421 GGGAGATAAGATCTGCAAA
66 GGGAGATAAGATCTGCAAA
* *
190194440 TTTAACCTGTTACCCTACTGCTTAAGGGATTAAGGCGAGTCGTCATCGATCTGCTCCGCTACTGC
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGC
*
190194505 TTAGGGAGATAAGATCTGCGAA
63 TTAGGGAGATAAGATCTGCAAA
* *
190194527 --T---CTGTTACCCTACTGCTTAAGGGATTAAGGCGAGTCTTCGATCTGCTCTACTACTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
190194587 GGGAGATAAGATCTGCAAA
66 GGGAGATAAGATCTGCAAA
* * *
190194606 TTTAACCTGTTACCCTACCGCTTAGGGGATTAAAGCGAGTCTTCGATCTGCTCCACTACTGCTAA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
*
190194671 GGGAGATAAGATCTACAAA
66 GGGAGATAAGATCTGCAAA
* * *
190194690 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGACGAGCCTTCGATCTGCTCCACTACTGCTAA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
190194755 GGGAGATAAGATCTGCAAA
66 GGGAGATAAGATCTGCAAA
* * * *
190194774 ATTAACTTGTTACCCTACTGTTTAGGGGCTTAAGGCG
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
190194811 CTGAATTTTG
Statistics
Matches: 414, Mismatches: 32, Indels: 18
0.89 0.07 0.04
Matches are distributed among these distances:
79 39 0.09
81 2 0.00
82 35 0.08
83 1 0.00
84 295 0.71
85 2 0.00
87 40 0.10
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (84 bp):
TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTGCAAA
Found at i:190194379 original size:43 final size:43
Alignment explanation
Indices: 190194327--190194468 Score: 132
Period size: 43 Copynumber: 3.3 Consensus size: 43
190194317 ATCTACTCCA
190194327 CTACTGCTTAGGGAGATAAGATCCGCAATTTTGACCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCCGCAATTTTGACCTGTTACC
* * * * * *
190194370 CTATTGCTTAGGG-GATTAAG--GCG-AGTCTTCGATCTGCT-CC
1 CTACTGCTTAGGGAGA-TAAGATCCGCAAT-TTTGACCTGTTACC
* * *
190194410 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCCGCAATTTTGACCTGTTACC
190194454 CTACTGCTTAAGGGA
1 CTACTGCTT-AGGGA
190194469 TTAAGGCGAG
Statistics
Matches: 75, Mismatches: 15, Indels: 17
0.70 0.14 0.16
Matches are distributed among these distances:
40 4 0.05
41 26 0.35
42 4 0.05
43 33 0.44
44 8 0.11
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (43 bp):
CTACTGCTTAGGGAGATAAGATCCGCAATTTTGACCTGTTACC
Found at i:190194721 original size:250 final size:247
Alignment explanation
Indices: 190194279--190194811 Score: 780
Period size: 250 Copynumber: 2.1 Consensus size: 247
190194269 TACTTTAACT
* * *
190194279 TGTTACCCTACTGCTTAGGGGGTTAAGGCGCATCTTTGATCTACTCCACTACTGCTTAGGGAGAT
1 TGTTACCCTACTGCTTAAGGGATTAAGGCGCATCTTCGATCTACTCCACTACTGCTTAGGGAGAT
* * ** *
190194344 AAGATCCGCAATTTTGACCTGTTACCCTATTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTC
66 AAGATCCGCAAATTTAACCTGTTACCCTACCGCTTAGGGGATTAAAGCGAGTCTTCGATCTGCTC
* *
190194409 CACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAAGGGATTAAG
131 CACTACTGCTAAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACTGCTTAAGGGATTAAG
* * *
190194474 GCGAGTCGTCATCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGCGAATC
196 ACGAG-C--CATCGATCTGCTCCACTACTGCTAAGGGAGATAAGATCTGCGAATC
* *
190194529 TGTTACCCTACTGCTTAAGGGATTAAGGCG-AGTCTTCGATCTGCTCTACTACTGCTTAGGGAGA
1 TGTTACCCTACTGCTTAAGGGATTAAGGCGCA-TCTTCGATCTACTCCACTACTGCTTAGGGAGA
*
190194593 TAAGATCTGCAAATTTAACCTGTTACCCTACCGCTTAGGGGATTAAAGCGAGTCTTCGATCTGCT
65 TAAGATCCGCAAATTTAACCTGTTACCCTACCGCTTAGGGGATTAAAGCGAGTCTTCGATCTGCT
*
190194658 CCACTACTGCTAAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAA
130 CCACTACTGCTAAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACTGCTTAAGGGATTAA
* *
190194723 GACGAGCCTTCGATCTGCTCCACTACTGCTAAGGGAGATAAGATCTGCAAAATTAAC
195 GACGAGCCATCGATCTGCTCCACTACTGCTAAGGGAGATAAGATCTGC-GAA-T--C
* * *
190194780 TTGTTACCCTACTGTTTAGGGGCTTAAGGCGC
1 -TGTTACCCTACTGCTTAAGGGATTAAGGCGC
190194812 TGAATTTTGT
Statistics
Matches: 254, Mismatches: 22, Indels: 11
0.89 0.08 0.04
Matches are distributed among these distances:
247 38 0.15
248 2 0.01
249 3 0.01
250 183 0.72
251 1 0.00
252 27 0.11
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (247 bp):
TGTTACCCTACTGCTTAAGGGATTAAGGCGCATCTTCGATCTACTCCACTACTGCTTAGGGAGAT
AAGATCCGCAAATTTAACCTGTTACCCTACCGCTTAGGGGATTAAAGCGAGTCTTCGATCTGCTC
CACTACTGCTAAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACTGCTTAAGGGATTAAG
ACGAGCCATCGATCTGCTCCACTACTGCTAAGGGAGATAAGATCTGCGAATC
Found at i:190194724 original size:43 final size:43
Alignment explanation
Indices: 190194577--190194800 Score: 133
Period size: 43 Copynumber: 5.3 Consensus size: 43
190194567 ATCTGCTCTA
*
190194577 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACC
* * * *** ** * *
190194620 CTACCGCTTAGGG-GATTAA-AGCGA-GTCTTCGATCTGCT-CC
1 CTACTGCTTAGGGAGA-TAAGATCTACAAATTTAACCTGTTACC
*
190194660 ACTACTGCTAAGGGAGATAAGATCTACAAATTTAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACC
* * ** * *
190194704 CTACTGCTTAGGG-GATTAAGA-CGAGC--CTTCGATCTGCT-CC
1 CTACTGCTTAGGGAGA-TAAGATCTA-CAAATTTAACCTGTTACC
* * * *
190194744 ACTACTGCTAAGGGAGATAAGATCTGCAAAATTAACTTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACC
*
190194788 CTACTGTTTAGGG
1 CTACTGCTTAGGG
190194801 GCTTAAGGCG
Statistics
Matches: 126, Mismatches: 41, Indels: 28
0.65 0.21 0.14
Matches are distributed among these distances:
40 4 0.03
41 46 0.37
42 16 0.13
43 56 0.44
44 4 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (43 bp):
CTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACC
Found at i:190194765 original size:41 final size:42
Alignment explanation
Indices: 190194485--190194767 Score: 121
Period size: 41 Copynumber: 6.9 Consensus size: 42
190194475 CGAGTCGTCA
* *
190194485 TCGATCTGCTCCGCTACTGCTTAGGGAGATAAGAT-----CT
1 TCGATCTGCTCCACTACTGCTAAGGGAGATAAGATCGAGCCT
* * * * *
190194522 GCGAATCTGTTACC-CTACTGCTTAAGGGA-TTAAG-GCGAGTCT
1 TCG-ATCTGCT-CCACTACTGC-TAAGGGAGATAAGATCGAGCCT
* * **
190194564 TCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGCA-AAT
1 TCGATCTGCTCCACTACTGCTAAGGGAGATAAGATC-G-AGCCT
** * * * * * *
190194607 TTAACCTGTTACC-CTACCGCTTAGGG-GATTAA-AGCGAGTCT
1 TCGATCTGCT-CCACTACTGCTAAGGGAGA-TAAGATCGAGCCT
* *
190194648 TCGATCTGCTCCACTACTGCTAAGGGAGATAAGATCTA-CAAAT
1 TCGATCTGCTCCACTACTGCTAAGGGAGATAAGATCGAGC--CT
** * * *
190194691 TTAACCTGTTACC-CTACTGCTTAGGG-GATTAAGA-CGAGCCT
1 TCGATCTGCT-CCACTACTGCTAAGGGAGA-TAAGATCGAGCCT
190194732 TCGATCTGCTCCACTACTGCTAAGGGAGATAAGATC
1 TCGATCTGCTCCACTACTGCTAAGGGAGATAAGATC
190194768 TGCAAAATTA
Statistics
Matches: 175, Mismatches: 44, Indels: 49
0.65 0.16 0.18
Matches are distributed among these distances:
37 2 0.01
38 17 0.10
39 8 0.05
40 12 0.07
41 63 0.36
42 21 0.12
43 48 0.27
44 4 0.02
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.28
Consensus pattern (42 bp):
TCGATCTGCTCCACTACTGCTAAGGGAGATAAGATCGAGCCT
Found at i:190195763 original size:1 final size:1
Alignment explanation
Indices: 190195757--190195817 Score: 50
Period size: 1 Copynumber: 61.0 Consensus size: 1
190195747 GGCCTCTCCA
* * * * * * **
190195757 TTTTTTTTTTTTTATTTTTATTTTTATTTTTTTATTTTTCTTTTATTTTTCCTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
190195818 GAAATAGAAG
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.08, C:0.05, G:0.00, T:0.87
Consensus pattern (1 bp):
T
Found at i:190195779 original size:20 final size:20
Alignment explanation
Indices: 190195756--190195806 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
190195746 TGGCCTCTCC
190195756 ATTTTTTTTTTTTTATTTTT
1 ATTTTTTTTTTTTTATTTTT
*
190195776 ATTTTTATTTTTTTATTTTT
1 ATTTTTTTTTTTTTATTTTT
*
190195796 CTTTTATTTTT
1 ATTTT-TTTTT
190195807 CCTTTTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 23 0.85
21 4 0.15
ACGTcount: A:0.12, C:0.02, G:0.00, T:0.86
Consensus pattern (20 bp):
ATTTTTTTTTTTTTATTTTT
Found at i:190195786 original size:25 final size:24
Alignment explanation
Indices: 190195758--190195817 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 24
190195748 GCCTCTCCAT
*
190195758 TTTTTTTTTTTTATTTTTATTTTTA
1 TTTTTTTTTTTT-CTTTTATTTTTA
*
190195783 TTTTTTTATTTTTCTTTTATTTTTC
1 TTTTTTT-TTTTTCTTTTATTTTTA
*
190195808 CTTTTTTTTT
1 TTTTTTTTTT
190195818 GAAATAGAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 3 0.10
25 23 0.74
26 5 0.16
ACGTcount: A:0.08, C:0.05, G:0.00, T:0.87
Consensus pattern (24 bp):
TTTTTTTTTTTTCTTTTATTTTTA
Found at i:190195811 original size:12 final size:11
Alignment explanation
Indices: 190195757--190195817 Score: 60
Period size: 11 Copynumber: 5.9 Consensus size: 11
190195747 GGCCTCTCCA
190195757 TTTT-TTTTT-
1 TTTTATTTTTC
*
190195766 TTTTATTTTTA
1 TTTTATTTTTC
*
190195777 TTTT-TATTT-
1 TTTTATTTTTC
190195786 TTTTATTTTTC
1 TTTTATTTTTC
190195797 TTTTATTTTTCC
1 TTTTATTTTT-C
190195809 TTTT-TTTTT
1 TTTTATTTTT
190195818 GAAATAGAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
9 8 0.18
10 13 0.29
11 19 0.42
12 5 0.11
ACGTcount: A:0.08, C:0.05, G:0.00, T:0.87
Consensus pattern (11 bp):
TTTTATTTTTC
Found at i:190203400 original size:40 final size:40
Alignment explanation
Indices: 190203355--190203522 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
190203345 CGGAATATAA
190203355 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
190203395 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
190203435 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
190203475 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
190203515 CCGGATAT
1 CCGGATAT
190203523 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:190211407 original size:40 final size:40
Alignment explanation
Indices: 190211362--190211528 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
190211352 CGGAATATAA
190211362 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
190211402 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
190211442 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
190211482 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
190211521 CCGGATAT
1 CCGGATAT
190211529 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:190217373 original size:32 final size:32
Alignment explanation
Indices: 190217337--190217398 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
190217327 AGCTTTTGGT
190217337 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
1 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
*
190217369 TTTTTCGTGTTGTCAAAGAGTTGAACAATG
1 TTTTTCATGTTGTCAAAGAGTTGAACAATG
190217399 AAAATAGATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (32 bp):
TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
Found at i:190225424 original size:47 final size:47
Alignment explanation
Indices: 190225356--190225485 Score: 133
Period size: 47 Copynumber: 2.8 Consensus size: 47
190225346 TTTGTGTGCT
* * * *
190225356 AGTGTATGACATGTCTAGGACATACATCGGCCACATT-ACGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAACATTAACGAGAGCC
* *
190225402 AGTGTAAGACCATGTCCGGGACATGGCAT---CAACATTGAAACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCAACATT--AACGAGAGCC
*
190225450 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAACAT
190225486 GATGTGTCAG
Statistics
Matches: 68, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
45 6 0.09
46 12 0.18
47 25 0.37
48 20 0.29
49 5 0.07
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCAACATTAACGAGAGCC
Found at i:190227046 original size:40 final size:40
Alignment explanation
Indices: 190226972--190227192 Score: 270
Period size: 40 Copynumber: 5.6 Consensus size: 40
190226962 CCGCACCAAG
* * * * *
190226972 GCCTACGGGACTTAACCCGGATATCACAATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
190227012 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
190227052 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
190227092 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
190227132 GCCTTCGGGTCTTAACCCGGATAT---AATTTGCAGCAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCA-CAAAT
190227170 G-CTTCGGGTCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
190227193 CATTCAATTT
Statistics
Matches: 161, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
37 26 0.16
38 5 0.03
40 130 0.81
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:190238103 original size:28 final size:28
Alignment explanation
Indices: 190238038--190238138 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
190238028 ATAGTGAATC
*
190238038 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
190238067 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
190238095 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
190238125 CGCACACTTAGTGC
1 CGCACACTTAGTGC
190238139 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:190246048 original size:28 final size:28
Alignment explanation
Indices: 190245983--190246083 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
190245973 ATAGTGAATC
*
190245983 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
190246012 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
190246040 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
190246070 CGCACACTTAGTGC
1 CGCACACTTAGTGC
190246084 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:190251276 original size:40 final size:39
Alignment explanation
Indices: 190251232--190251339 Score: 103
Period size: 40 Copynumber: 2.7 Consensus size: 39
190251222 CTCAACCCGA
*
190251232 ATTTAGTAGCTTACTCGAAAGCCTTCGGATCTTAGTCCAG
1 ATTTAGTA-CTTACACGAAAGCCTTCGGATCTTAGTCCAG
** * * *
190251272 ATTTAGTAACTCGCACGTATGCCGTT-GGATCTTAGTCCGG
1 ATTTAGT-ACTTACACGAAAGCC-TTCGGATCTTAGTCCAG
190251312 ATTTAGTCACTTAGCAC-AAAGCCTTCGG
1 ATTTAGT-ACTTA-CACGAAAGCCTTCGG
190251340 GACTTAGCCC
Statistics
Matches: 53, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
39 2 0.04
40 45 0.85
41 6 0.11
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.31
Consensus pattern (39 bp):
ATTTAGTACTTACACGAAAGCCTTCGGATCTTAGTCCAG
Found at i:190255693 original size:31 final size:32
Alignment explanation
Indices: 190255657--190255717 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
190255647 AGTTTTTGGT
190255657 TTTTTCATGTTG-CAAAGAGTTGAACAATGGA
1 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
190255688 TTTTTCATGTTGTCAAAGAGTTGAACAATG
1 TTTTTCATGTTGTCAAAGAGTTGAACAATG
190255718 AAAATAGATG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 12 0.41
32 17 0.59
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (32 bp):
TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
Found at i:190258564 original size:45 final size:45
Alignment explanation
Indices: 190258474--190258587 Score: 146
Period size: 45 Copynumber: 2.6 Consensus size: 45
190258464 CCAGCATTTC
* * *
190258474 GCCTGCTAGGCTCG-AGGCCCG-ATATCATTTCATCGACATTATA
1 GCCTGCTAGGCTCGAAAGCCCGAATATCATCTCACCGACATTATA
*
190258517 GCCTGTTAGGCTCGAAAGCCCGAATAGT-ATCTCACCGACATTATA
1 GCCTGCTAGGCTCGAAAGCCCGAATA-TCATCTCACCGACATTATA
190258562 GCCTGCTAGGCTC-AAAGGCCCGAATA
1 GCCTGCTAGGCTCGAAA-GCCCGAATA
190258588 ATATTTCCCC
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
43 13 0.21
44 9 0.15
45 39 0.63
46 1 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (45 bp):
GCCTGCTAGGCTCGAAAGCCCGAATATCATCTCACCGACATTATA
Found at i:190258816 original size:43 final size:43
Alignment explanation
Indices: 190258755--190258999 Score: 357
Period size: 43 Copynumber: 5.7 Consensus size: 43
190258745 CAACAAACTT
* * * * *
190258755 GCACACTTAGTGCTAATTAATTAACCAAAGTTATAATGGTTTC
1 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
190258798 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
1 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
*
190258841 GCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTATC
1 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
* *
190258884 ACACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTATC
1 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
* * *
190258927 ACACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTATATC
1 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
*
190258970 GCACATTTAGTGCC-ATTACATTAAACCGAA
1 GCACACTTAGTGCCAATTA-ATT-AACCGAA
190259000 CTTATATTTG
Statistics
Matches: 189, Mismatches: 11, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
42 4 0.02
43 179 0.95
44 6 0.03
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (43 bp):
GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
Found at i:190275144 original size:40 final size:40
Alignment explanation
Indices: 190275079--190275243 Score: 201
Period size: 40 Copynumber: 4.2 Consensus size: 40
190275069 TCTTCGGAAT
*
190275079 TTAG-CCGGATATAACCA-TAAGCAC-AATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACT-AGCACGAA-TGCCTTCGGGTC
* * * *** * *
190275118 TTAACCTGGATTTCGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
*
190275158 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
190275198 TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
190275238 TTAGCC
1 TTAGCC
190275244 TATAATCATT
Statistics
Matches: 106, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.03
40 100 0.94
41 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
Found at i:190275257 original size:36 final size:38
Alignment explanation
Indices: 190275098--190275281 Score: 167
Period size: 40 Copynumber: 4.7 Consensus size: 38
190275088 TATAACCATA
* * * * **
190275098 AGCACAATTGCCTTCGGGTCTTAACCTGGATTTCGTAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGTATAAC--AACT
*
190275138 TGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCC-G-TATAACAACT
* *
190275178 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCC-G-TATAACAACT
* *
190275218 AGCACGAATGCCTTCGGGTCTTAG-CC-TATAATC-ATT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGTATAA-CAACT
* *
190275254 AGCATAAATGCCTTCGGGACTTAGCCCG
1 AGCACAAATGCCTTCGGGTCTTAGCCCG
190275282 GGTATCATTC
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
36 28 0.22
37 3 0.02
39 2 0.02
40 88 0.70
41 1 0.01
42 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (38 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGTATAACAACT
Found at i:190291341 original size:40 final size:40
Alignment explanation
Indices: 190291282--190291489 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 40
190291272 CATTGGAATG
* * *
190291282 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
**
190291322 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * **
190291362 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
190291402 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
190291442 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
190291482 ATATCCGG
1 ATATCCGG
190291490 TTAAATTCCG
Statistics
Matches: 141, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.02
40 136 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:190299336 original size:40 final size:40
Alignment explanation
Indices: 190299277--190299484 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 40
190299267 CATTGGAATG
* * *
190299277 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
**
190299317 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * **
190299357 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
190299397 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
190299437 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
190299477 ATATCCGG
1 ATATCCGG
190299485 TTAAATTCCG
Statistics
Matches: 141, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.02
40 136 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:190306473 original size:4 final size:4
Alignment explanation
Indices: 190306457--190306490 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
190306447 ACAAATGATA
* *
190306457 GAAT GAGT GAAT GAAT GGAT GAAT GAAT GAAT GA
1 GAAT GAAT GAAT GAAT GAAT GAAT GAAT GAAT GA
190306491 TTGATTGATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.44, C:0.00, G:0.32, T:0.24
Consensus pattern (4 bp):
GAAT
Found at i:190306943 original size:15 final size:14
Alignment explanation
Indices: 190306923--190306954 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
190306913 TCTTTTGTGA
190306923 CCTCTTTGTTTTGCT
1 CCTCTTTGTTTTG-T
190306938 CCTCTTTGTTTTGT
1 CCTCTTTGTTTTGT
190306952 CCT
1 CCT
190306955 TAATTCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.00, C:0.28, G:0.12, T:0.59
Consensus pattern (14 bp):
CCTCTTTGTTTTGT
Found at i:190318980 original size:19 final size:19
Alignment explanation
Indices: 190318970--190319007 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
190318960 TCCAAGTGTT
*
190318970 GTAAAAGTTTCATAAGTTC
1 GTAAAAGTTTCACAAGTTC
*
190318989 GTAAAAGTTTCATAAGTTC
1 GTAAAAGTTTCACAAGTTC
190319008 TCAGTTTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (19 bp):
GTAAAAGTTTCACAAGTTC
Found at i:190334702 original size:40 final size:39
Alignment explanation
Indices: 190334657--190334786 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
190334647 CGGAATACAA
190334657 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
190334697 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
190334737 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
190334777 CCGGATATAA
1 CCGGATATAA
190334787 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:190342755 original size:40 final size:39
Alignment explanation
Indices: 190342710--190342839 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
190342700 CGGAATACAA
190342710 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
190342750 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
190342790 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
190342830 CCGGATATAA
1 CCGGATATAA
190342840 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:190348863 original size:43 final size:43
Alignment explanation
Indices: 190348815--190348927 Score: 138
Period size: 43 Copynumber: 2.6 Consensus size: 43
190348805 ATTGAGATGA
* * *
190348815 GATTACATGTAAGACCATGTCTGGGACATTGACATTG-TATTGT
1 GATTACATGTAAGACCATGTCTGGGACATTAACATCGTTA-TAT
* *
190348858 GATTACGTGTAAAACCATGTCTGGGACATTAACATCGTTATAT
1 GATTACATGTAAGACCATGTCTGGGACATTAACATCGTTATAT
* * *
190348901 GATTTCATGTAAGACCACGTATGGGAC
1 GATTACATGTAAGACCATGTCTGGGAC
190348928 GTTGGCAATG
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 57 0.97
44 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTAACATCGTTATAT
Found at i:190350837 original size:20 final size:20
Alignment explanation
Indices: 190350812--190350858 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
190350802 ATTTTGATAT
*
190350812 ACATGAT-TGATATGATATGC
1 ACATGATATG-TAGGATATGC
190350832 ACATGATATGTAGGATATGC
1 ACATGATATGTAGGATATGC
190350852 ACATGAT
1 ACATGAT
190350859 GTATTCATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTAGGATATGC
Found at i:190351008 original size:25 final size:26
Alignment explanation
Indices: 190350908--190351056 Score: 232
Period size: 25 Copynumber: 5.8 Consensus size: 26
190350898 GAGGAAGTGC
190350908 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
190350934 AAAAAGGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
*
190350961 AAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
190350987 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
190351012 AAAAGGGCTT-TGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
190351037 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
190351057 ATTAAAGAGG
Statistics
Matches: 117, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
25 56 0.48
26 35 0.30
27 26 0.22
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:190356669 original size:20 final size:20
Alignment explanation
Indices: 190356644--190356690 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
190356634 ATTTTGATAT
190356644 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
190356664 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
190356684 ACATGAT
1 ACATGAT
190356691 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:190356838 original size:25 final size:26
Alignment explanation
Indices: 190356740--190356863 Score: 207
Period size: 26 Copynumber: 4.8 Consensus size: 26
190356730 GAGGAAGTGC
190356740 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
190356766 AAAAAGGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
190356793 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
190356819 AAAAGGGCTT-TGCCCCAGTTTAACG
1 AAAAGGGCTTATGCCCCAGTTTATTG
190356844 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
190356864 ATTAAAGAGG
Statistics
Matches: 95, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
25 33 0.35
26 36 0.38
27 26 0.27
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:190372148 original size:45 final size:46
Alignment explanation
Indices: 190372094--190372208 Score: 144
Period size: 47 Copynumber: 2.5 Consensus size: 46
190372084 TGCACACTTT
* * *
190372094 TCACAATTGGTCATTCGGCCTTATCACATAT-TCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGACCTTATCACATATAACACTTACACAT-TCA
*
190372140 TCACATTGGCCATTCGACCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGACCTTATCACATATA-ACACTTACACATTCA
*
190372187 TCACATTGGCCATTCGATCTTA
1 TCACATTGGCCATTCGACCTTA
190372209 AGCTAGATAT
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
45 24 0.39
46 5 0.08
47 32 0.52
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (46 bp):
TCACATTGGCCATTCGACCTTATCACATATAACACTTACACATTCA
Found at i:190374797 original size:22 final size:20
Alignment explanation
Indices: 190374757--190374797 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
190374747 AGTCCTATTA
*
190374757 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
190374777 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
190374798 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:190377037 original size:31 final size:31
Alignment explanation
Indices: 190376994--190377057 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
190376984 CCTTTTCATA
190376994 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
190377025 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
190377056 TT
1 TT
190377058 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:190377327 original size:23 final size:24
Alignment explanation
Indices: 190377250--190377394 Score: 197
Period size: 24 Copynumber: 6.0 Consensus size: 24
190377240 GCTTTATCAT
*
190377250 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
190377275 ATAACTGGGGCA-AAGCCCTTTTTTTA
1 ATAACTGGGGCATAAGCCC---TTTTA
190377301 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
190377324 ATAACTGAGGCGTAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
190377348 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
190377372 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
190377395 GCACTTCCTC
Statistics
Matches: 109, Mismatches: 5, Indels: 13
0.86 0.04 0.10
Matches are distributed among these distances:
23 22 0.20
24 56 0.51
25 8 0.07
26 17 0.16
27 6 0.06
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:190377389 original size:71 final size:72
Alignment explanation
Indices: 190377250--190377393 Score: 222
Period size: 71 Copynumber: 2.0 Consensus size: 72
190377240 GCTTTATCAT
190377250 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTTTTAATAACTGGGGCATA
1 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCC--TTTTTAATAACTGGGGCATA
190377315 AGCCCTTTA
64 AGCCCTTTA
*
190377324 ATAACT-GAGGCGTAAGCC-CTTTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATA
1 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATA
190377386 AGCCCTTT
64 AGCCCTTT
190377394 TGCACTTCCT
Statistics
Matches: 67, Mismatches: 1, Indels: 7
0.89 0.01 0.09
Matches are distributed among these distances:
71 27 0.40
73 24 0.36
74 16 0.24
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (72 bp):
ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTTAATAACTGGGGCATAAG
CCCTTTA
Found at i:190377466 original size:9 final size:9
Alignment explanation
Indices: 190377452--190377508 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
190377442 ATCTCGTGTG
190377452 CATATCATA
1 CATATCATA
*
190377461 CATATCATGTG
1 CATATCA--TA
190377472 CATATCATA
1 CATATCATA
* *
190377481 CATGTCATGTG
1 CATATCA--TA
190377492 CATATCATA
1 CATATCATA
190377501 CATATCAT
1 CATATCAT
190377509 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:190377471 original size:20 final size:20
Alignment explanation
Indices: 190377448--190377510 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
190377438 GAACATCTCG
190377448 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
190377468 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
190377488 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
190377508 TGT
1 TGT
190377511 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:190378852 original size:27 final size:26
Alignment explanation
Indices: 190378752--190378845 Score: 136
Period size: 27 Copynumber: 3.5 Consensus size: 26
190378742 GGGCATATTC
*
190378752 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACC-TACAGGGGCT-TTACG
190378779 GTCACTTTACCTTACAGGGGCTTTACG
1 GTCACTTTACC-TACAGGGGCTTTACG
190378806 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTA-CCTACAGGGGCTTTACG
190378833 GTCACTTTACCTA
1 GTCACTTTACCTA
190378846 ATAGGGGTAT
Statistics
Matches: 63, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
26 4 0.06
27 56 0.89
28 3 0.05
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (26 bp):
GTCACTTTACCTACAGGGGCTTTACG
Found at i:190379054 original size:108 final size:110
Alignment explanation
Indices: 190378903--190379102 Score: 244
Period size: 108 Copynumber: 1.8 Consensus size: 110
190378893 CTACAAACCA
*** * *
190378903 AGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTT-TA-GAAGTCAAGGGTATT
1 AGGGTATTTCAGTAATTTCACAAACCAATGGTATTTCTATAATTTTAAACGAAATCAAGGGTATT
190378966 TCTGTAACTTTGTAAATCAAGGGTATTTTGGTAATTTTAAAATTG
66 TCTGTAACTTTGTAAATCAAGGGTATTTTGGTAATTTTAAAATTG
* * * * *
190379011 AGGGTATTTCGGTAATTTCACAAACCAGTGGTATTT-TGGTAATTTTACAAACTAAATTAAGGGT
1 AGGGTATTTCAGTAATTTCACAAACCAATGGTATTTCT-ATAATTTT--AAACGAAATCAAGGGT
* *
190379075 ATTTCTGTAATTTTGTAAATCGAGGGTA
63 ATTTCTGTAACTTTGTAAATCAAGGGTA
190379103 AAATAGTAAT
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
107 1 0.01
108 38 0.51
111 1 0.01
112 35 0.47
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.41
Consensus pattern (110 bp):
AGGGTATTTCAGTAATTTCACAAACCAATGGTATTTCTATAATTTTAAACGAAATCAAGGGTATT
TCTGTAACTTTGTAAATCAAGGGTATTTTGGTAATTTTAAAATTG
Found at i:190379101 original size:27 final size:27
Alignment explanation
Indices: 190378901--190379102 Score: 135
Period size: 27 Copynumber: 7.3 Consensus size: 27
190378891 ATCTACAAAC
* *
190378901 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCTGTAATTTTGTAAAT
* *
190378928 CAATGGTATTTCTATAATTTT-TAGAAGT
1 CAAGGGTATTTCTGTAATTTTGTA-AA-T
*
190378956 CAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCTGTAATTTTGTAAAT
*
190378983 CAAGGGTATTT-TGGTAATTTT-AAAAT
1 CAAGGGTATTTCT-GTAATTTTGTAAAT
** * ***
190379009 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTCTGTAATTTTGTAAAT
* *
190379035 CCAGTGGTATTT-TGGTAATTTTACAAACTAAAT
1 CAAG-GGTATTTCT-GTAATTTT-----GTAAAT
*
190379068 TAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCTGTAATTTTGTAAAT
*
190379095 CGAGGGTA
1 CAAGGGTA
190379103 AAATAGTAAT
Statistics
Matches: 135, Mismatches: 25, Indels: 30
0.71 0.13 0.16
Matches are distributed among these distances:
26 25 0.19
27 67 0.50
28 20 0.15
29 2 0.01
32 18 0.13
33 3 0.02
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCTGTAATTTTGTAAAT
Found at i:190379111 original size:27 final size:27
Alignment explanation
Indices: 190379081--190379353 Score: 219
Period size: 27 Copynumber: 9.8 Consensus size: 27
190379071 GGGTATTTCT
* *
190379081 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * *
190379108 GTAATTCTATAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
190379135 GTAATTCTATAAATCGACGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
190379162 --ATTTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
190379187 GTAATTCTGTAAGTCGAGGGTAAAACGAGGGTAAAA
1 GTAATTCTGTAAATCGAGGGTAAAAC---------A
* **
190379223 TGGTAATTATGTAAATCG-GGGTAAAATG
1 --GTAATTCTGTAAATCGAGGGTAAAACA
*
190379251 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * *
190379278 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * * *
190379305 GTACTTCTATAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
190379332 GTAATTATGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
190379354 CTTTGGTAAT
Statistics
Matches: 201, Mismatches: 31, Indels: 28
0.77 0.12 0.11
Matches are distributed among these distances:
25 21 0.10
26 14 0.07
27 143 0.71
36 1 0.00
37 8 0.04
38 14 0.07
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACA
Found at i:190379210 original size:38 final size:37
Alignment explanation
Indices: 190379168--190379248 Score: 108
Period size: 38 Copynumber: 2.2 Consensus size: 37
190379158 AACAATTTTT
* * *
190379168 GTAAATCGAGGGTAAAACAGTAATTCTGTAAGTCGAGG
1 GTAAAACGAGGGTAAAACAGTAATTATGTAAATCG-GG
**
190379206 GTAAAACGAGGGTAAAATGGTAATTATGTAAATCGGG
1 GTAAAACGAGGGTAAAACAGTAATTATGTAAATCGGG
190379243 GTAAAA
1 GTAAAA
190379249 TGGTAATTCT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
37 8 0.21
38 30 0.79
ACGTcount: A:0.41, C:0.07, G:0.28, T:0.23
Consensus pattern (37 bp):
GTAAAACGAGGGTAAAACAGTAATTATGTAAATCGGG
Found at i:190379378 original size:54 final size:51
Alignment explanation
Indices: 190379207--190379380 Score: 159
Period size: 54 Copynumber: 3.3 Consensus size: 51
190379197 AAGTCGAGGG
* *
190379207 TAAAACGAGGGTAAAATGGTAATTATGTAAATCGGGGTAAAATGGTAATTCT
1 TAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGTAAAATGGTAATT-T
* * * * * * *
190379259 GTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACGGTACTTCT
1 -TAAATCGAGGGTAAAACGGTAATTATGTAAATC-GGGGTAAAATGGTAATT-T
* ***
190379313 ATAAATTGAGGGTAAAACGGTAATTATGTAAATCGGGGGTACTTTGGTAATTT
1 -TAAATCGAGGGTAAAACGGTAATTATGTAAATC-GGGGTAAAATGGTAATTT
190379366 TACAAGTCGAGGGTA
1 TA-AA-TCGAGGGTA
190379381 TTTCAATAAT
Statistics
Matches: 95, Mismatches: 23, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
52 2 0.02
53 30 0.32
54 63 0.66
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.29
Consensus pattern (51 bp):
TAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGTAAAATGGTAATTT
Found at i:190381700 original size:28 final size:28
Alignment explanation
Indices: 190381631--190381731 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
190381621 GACAAGATTG
* * * *
190381631 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
190381661 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
190381689 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
190381718 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
190381732 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Done.